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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0002346,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0000924,UBERON:0006601
|DRA_sample_Accession=CAGE@SAMD00005487
|accession_numbers=CAGE;DRX007966;DRR008838;DRZ000263;DRZ001648;DRZ011613;DRZ012998
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0002346,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0010316,UBERON:0005291,UBERON:0010317
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:171,DOID:3095,DOID:2994
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:171,DOID:3095,DOID:2994
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chrX:25034067..25034088,-!p1@ARX!2.32!210.13!ARX;;chr3:128212033..128212051,-!p1@GATA2!1.87!72.98!GATA2;;chrX:30327504..30327509,-!p1@NR0B1!1.84!67.55!NR0B1;;chr7:19157248..19157268,-!p1@TWIST1!1.78!156.66!TWIST1;;chr20:42574529..42574563,+!p3@TOX2!1.76!56.86!TOX2;;chr14:57277178..57277203,-!p1@OTX2!1.73!52.79!OTX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.72!51.43!TFAP2B;;chr14:76842457..76842494,+!p1@ESRRB!1.60!38.36!ESRRB;;chr1:25256756..25256774,-!p1@RUNX3!1.51!57.20!RUNX3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.45!27.16!ZBED1;;chr2:5832508..5832524,+!p1@SOX11!1.43!26.14!SOX11;;chr15:57511609..57511651,+!p2@TCF12!1.42!42.09!TCF12;;chr6:50789717..50789729,+!p4@TFAP2B!1.42!25.46!TFAP2B;;chr2:176969228..176969260,+!p1@HOXD11!1.39!23.59!HOXD11;;chr13:100634031..100634045,+!p1@ZIC2!1.38!23.25!ZIC2;;chr3:128206762..128206781,-!p2@GATA2!1.37!135.45!GATA2;;chr2:176957443..176957457,+!p1@HOXD13!1.35!21.39!HOXD13;;chr13:100623375..100623425,-!p1@ZIC5!1.33!20.54!ZIC5;;chr7:121944796..121944814,-!p1@FEZF1!1.31!19.52!FEZF1;;chr1:18957333..18957375,+!p1@PAX7!1.27!17.65!PAX7;;chr6:50786571..50786590,+!p2@TFAP2B!1.26!17.31!TFAP2B;;chr3:181429704..181429722,+!p1@SOX2!1.25!16.97!SOX2;;chr10:131762504..131762555,-!p1@EBF3!1.23!16.12!EBF3;;chr6:50786509..50786527,+!p5@TFAP2B!1.21!15.28!TFAP2B;;chr1:18958008..18958023,+!p2@PAX7!1.19!14.60!PAX7;;chr11:16629369..16629392,-!p5@SOX6!1.18!14.09!SOX6;;chr6:50786547..50786564,+!p3@TFAP2B!1.17!13.92!TFAP2B;;chr14:99738138..99738163,-!p1@BCL11B!1.15!13.24!BCL11B;;chr20:39317868..39317884,-!p1@MAFB!1.12!142.91!MAFB;;chr2:223163706..223163730,-!p1@PAX3!1.12!12.05!PAX3;;chr2:176969179..176969226,+!p2@HOXD11!1.10!11.71!HOXD11;;chr6:50786057..50786069,+!p9@TFAP2B!1.10!11.71!TFAP2B;;chr7:113726357..113726443,+!p1@FOXP2!1.08!19.18!FOXP2;;chr4:299227..299272,-!p1@ZNF732!1.08!11.03!ZNF732;;chr2:66662281..66662308,+!p1@MEIS1!1.07!37.17!MEIS1;;chr2:176972000..176972025,+!p4@HOXD11!1.06!10.52!HOXD11;;chr12:85673977..85674015,+!p1@ALX1!1.04!9.84!ALX1;;chr2:239148671..239148686,-!p1@HES6!1.03!36.15!HES6;;chr20:62680984..62680999,-!p1@SOX18!1.03!12.90!SOX18;;chr19:22817119..22817145,+!p1@ZNF492!1.00!15.11!ZNF492;;chrX:84499081..84499115,+!p2@ZNF711!1.00!13.41!ZNF711;;chrX:84498989..84499003,+!p1@ZNF711!1.00!12.56!ZNF711;;chr14:37131058..37131139,+!p1@PAX9!1.00!9.00!PAX9;;chr2:176969097..176969109,+!p3@HOXD11!0.99!8.83!HOXD11;;chr15:83953397..83953425,-!p1@BNC1!0.98!9.84!BNC1;;chr20:42543441..42543497,+!p1@TOX2!0.95!36.49!TOX2;;chr13:100634004..100634025,+!p2@ZIC2!0.95!7.98!ZIC2;;chr8:128748308..128748324,+!p2@MYC!0.94!221.67!MYC;;chr8:11561684..11561751,+!p1@GATA4!0.94!7.64!GATA4;;chr1:24645832..24645853,+!p1@GRHL3!0.93!7.47!GRHL3;;chr17:38465441..38465481,+!p6@RARA!0.92!9.00!RARA;;chr8:145669791..145669834,-!p1@TONSL!0.91!21.39!TONSL;;chr2:71127699..71127744,+!p1@VAX2!0.91!14.94!VAX2;;chr5:134369905..134369972,-!p1@PITX1!0.91!11.03!PITX1;;chr9:132427883..132427951,+!p2@PRRX2!0.91!7.13!PRRX2;;chr2:219849012..219849065,-!p1@FEV!0.91!7.13!FEV;;chr11:16627528..16627550,-!p7@SOX6!0.90!6.96!SOX6;;chr2:145277640..145277771,-!p1@ZEB2!0.89!96.41!ZEB2;;chr20:32274179..32274213,-!p1@E2F1!0.88!46.34!E2F1;;chr20:42543506..42543549,+!p2@TOX2!0.88!16.63!TOX2;;chr2:113993052..113993097,-!p2@PAX8!0.88!15.45!PAX8;;chr1:18958059..18958081,+!p6@PAX7!0.88!6.62!PAX7;;chr13:100638100..100638115,+!p4@ZIC2!0.88!6.62!ZIC2;;chr19:23433144..23433204,-!p1@ZNF724P!0.87!30.04!ZNF724P;;chr7:121944689..121944705,-!p2@FEZF1!0.87!6.45!FEZF1;;chr8:40755333..40755352,-!p1@ZMAT4!0.87!6.45!ZMAT4;;chr12:85674018..85674039,+!p3@ALX1!0.87!6.45!ALX1;;chr1:153940354..153940395,+!p1@CREB3L4!0.86!26.99!CREB3L4;;chr2:25475120..25475176,-!p2@DNMT3A!0.86!8.66!DNMT3A;;chr2:5832493..5832507,+!p2@SOX11!0.86!6.28!SOX11;;chr10:102891048..102891078,+!p1@TLX1!0.86!6.28!TLX1;;chr7:150974206..150974255,-!p1@SMARCD3!0.85!39.89!SMARCD3;;chr17:46688334..46688385,-!p1@HOXB7!0.85!9.00!HOXB7;;chr17:53342311..53342400,+!p1@HLF!0.85!6.96!HLF;;chr15:57511589..57511608,+!p4@TCF12!0.85!6.11!TCF12;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.85!6.11!PEG3;;chr11:44331576..44331650,-!p1@ALX4!0.85!6.11!ALX4;;chr1:23857698..23857733,-!p1@E2F2!0.84!11.20!E2F2;;chrX:131624056..131624069,-!p2@MBNL3!0.84!8.32!MBNL3;;chr19:24097675..24097699,+!p1@ZNF726!0.83!20.54!ZNF726;;chr15:42749722..42749739,-!p2@ZFP106!0.83!10.86!ZFP106;;chr20:35202909..35202963,+!p2@TGIF2,p3@C20orf24!0.83!8.49!TGIF2;;chr2:176969124..176969155,+!p5@HOXD11!0.82!5.60!HOXD11;;chr11:16629288..16629315,-!p8@SOX6!0.82!5.60!SOX6;;chr12:54348655..54348693,+!p1@HOXC12!0.82!5.60!HOXC12;;chr20:42295745..42295765,+!p1@MYBL2!0.81!96.75!MYBL2;;chr17:46806067..46806097,-!p1@HOXB13!0.81!5.43!HOXB13;;chr17:46806035..46806059,-!p2@HOXB13!0.80!5.26!HOXB13;;chr3:193853927..193853944,+!p1@HES1!0.79!181.95!HES1;;chr14:21994337..21994442,-!p1@SALL2!0.79!15.28!SALL2;;chr10:70320074..70320106,+!p1@TET1!0.79!10.86!TET1;;chr8:86089369..86089408,+!p1@E2F5!0.78!14.60!E2F5;;chr8:86089417..86089440,+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|fonse_cell_line=FF:10774-110F9
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|fonse_cell_line_closure=FF:10774-110F9
|fonse_cell_line_closure=FF:10774-110F9
Line 35: Line 41:
|fonse_treatment_closure=
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|has_quality=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aTASK1.CNhs11866.10774-110F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aTASK1.CNhs11866.10774-110F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aTASK1.CNhs11866.10774-110F9.hg38.nobarcode.ctss.bed.gz
|id=FF:10774-110F9
|id=FF:10774-110F9
|is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346
|is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346
|name=neuroectodermal tumor cell line:TASK1
|is_obsolete=
|library_id=CNhs11866
|library_id_phase_based=2:CNhs11866
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10774
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10774
|name=neuroectodermal tumor cell line:TASK1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
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|profile_hcage=CNhs11866,LSID830,release010,COMPLETED
|profile_hcage=CNhs11866,LSID830,release010,COMPLETED
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|profile_srnaseq=,,,
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|rna_catalog_number=
Line 57: Line 78:
|rna_weight_ug=16.43814
|rna_weight_ug=16.43814
|sample_age=21
|sample_age=21
|sample_category=cell lines
|sample_cell_catalog=jcrb0139
|sample_cell_catalog=jcrb0139
|sample_cell_line=TASK1
|sample_cell_line=TASK1
Line 77: Line 99:
|sample_tissue=thorax
|sample_tissue=thorax
|top_motifs=TOPORS:1.93233708865;PAX4:1.81201177638;POU1F1:1.7605381254;PITX1..3:1.68350006909;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58188084132;FOXP1:1.54971737937;CDX1,2,4:1.49326718469;E2F1..5:1.44375690212;NRF1:1.36132282276;CRX:1.35556070523;ZBTB16:1.35333740351;NFY{A,B,C}:1.29733075684;TEF:1.29505171912;YY1:1.19169434228;ZNF143:1.17625804436;FOXD3:1.15865222345;IKZF2:1.15616865249;PBX1:1.08343717498;SOX{8,9,10}:1.07848039849;ELK1,4_GABP{A,B1}:1.05232146183;DBP:1.00410716419;HOXA9_MEIS1:0.998349986515;NANOG:0.949791219122;ARID5B:0.946805052923;AIRE:0.93419848378;NKX6-1,2:0.90109111904;PAX6:0.800465730929;ADNP_IRX_SIX_ZHX:0.777631306636;LHX3,4:0.773802294661;HOX{A5,B5}:0.771715205424;PAX8:0.768292248317;PRRX1,2:0.752560883707;PAX1,9:0.737980739673;ALX1:0.716698035979;OCT4_SOX2{dimer}:0.70155835145;PAX3,7:0.676282032545;ZNF384:0.635560591564;GFI1:0.633235834032;TFDP1:0.629671949453;BREu{core}:0.628124222812;RFX1:0.587358964762;STAT5{A,B}:0.550562898888;CUX2:0.537727322834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.50332147358;RBPJ:0.499851120688;NKX3-1:0.494732613839;POU6F1:0.46770591525;POU3F1..4:0.463934114495;FOXQ1:0.434142794384;SOX5:0.429477777548;bHLH_family:0.418930166171;HOX{A4,D4}:0.41620328976;SOX17:0.389414828776;PRDM1:0.379662537953;EN1,2:0.344763412739;AHR_ARNT_ARNT2:0.320580449213;RFX2..5_RFXANK_RFXAP:0.271449222955;FOXA2:0.24926579663;GATA6:0.240714910401;FOXL1:0.234408002506;ONECUT1,2:0.223277888922;POU2F1..3:0.213955105944;EVI1:0.213117238553;HOX{A6,A7,B6,B7}:0.20740627749;NKX2-3_NKX2-5:0.200448678569;NKX2-2,8:0.183021181002;STAT1,3:0.181952592405;TLX1..3_NFIC{dimer}:0.16893098341;MYB:0.151588246109;ATF4:0.124154187122;CREB1:0.1078690984;HES1:0.104826716329;KLF4:0.0992706532776;PPARG:0.0786009077352;CDC5L:0.0722737469334;ZIC1..3:0.0679178768826;LEF1_TCF7_TCF7L1,2:0.0652996779367;FOXM1:0.0504059809298;NR5A1,2:0.023758795792;GTF2A1,2:0.0213776798882;EGR1..3:-0.00403490363246;POU5F1:-0.0350094065432;MYBL2:-0.0641954247091;UFEwm:-0.0653907925249;ATF5_CREB3:-0.0693974903381;ZFP161:-0.0813027933204;NKX2-1,4:-0.101054208923;RXR{A,B,G}:-0.109707893045;AR:-0.118718727408;MEF2{A,B,C,D}:-0.119126280499;FOXP3:-0.128749195508;HNF1A:-0.143179310256;RUNX1..3:-0.149839821411;PAX5:-0.151178257277;GATA4:-0.162716651286;GFI1B:-0.179681070531;HIC1:-0.180417989159;VSX1,2:-0.184259500526;XBP1:-0.191053009187;REST:-0.196856539003;HNF4A_NR2F1,2:-0.20636620155;DMAP1_NCOR{1,2}_SMARC:-0.207950434614;ELF1,2,4:-0.221170129547;ZBTB6:-0.22556475296;SNAI1..3:-0.226374681891;HSF1,2:-0.265256684278;HBP1_HMGB_SSRP1_UBTF:-0.284124452531;IKZF1:-0.29656469399;FOX{I1,J2}:-0.30234698581;ESRRA:-0.31090335533;HMGA1,2:-0.313833685057;GTF2I:-0.341698229697;BPTF:-0.351922457386;ZEB1:-0.357051805521;SPIB:-0.365767966842;RREB1:-0.368279195288;NFIL3:-0.415362850502;FOX{D1,D2}:-0.426495640081;NR1H4:-0.427223883954;ALX4:-0.451786550769;ATF2:-0.46808875096;CEBPA,B_DDIT3:-0.470204940001;NR6A1:-0.471358351285;ZNF423:-0.480182067686;XCPE1{core}:-0.498199916347;NANOG{mouse}:-0.504042014968;SP1:-0.504061227518;PAX2:-0.505723587336;TEAD1:-0.515550771301;TP53:-0.519594705253;FOSL2:-0.52445520016;NKX3-2:-0.526737705636;PATZ1:-0.52961032877;HAND1,2:-0.534743180492;NFKB1_REL_RELA:-0.536706688929;T:-0.555166844484;SOX2:-0.579192015565;TFAP2B:-0.581799735182;GLI1..3:-0.588372368428;JUN:-0.597097896945;SPI1:-0.615569491359;TAL1_TCF{3,4,12}:-0.628734690832;LMO2:-0.637157853685;MZF1:-0.641884381702;SREBF1,2:-0.642076451479;NFE2:-0.669171988876;MYFfamily:-0.669994323233;GZF1:-0.697017147081;ZNF238:-0.713979097296;SMAD1..7,9:-0.729708106522;ETS1,2:-0.745302413486;FOS_FOS{B,L1}_JUN{B,D}:-0.747411751925;BACH2:-0.756978421607;NHLH1,2:-0.759113634073;EBF1:-0.773874608475;TBP:-0.775382467016;FOX{F1,F2,J1}:-0.777348334814;HLF:-0.778397149323;ATF6:-0.778436965442;MTE{core}:-0.787957974428;FOXO1,3,4:-0.794632180637;MED-1{core}:-0.804962120468;MYOD1:-0.829803470418;HMX1:-0.844860509727;SPZ1:-0.846155858496;NR3C1:-0.856221893964;NFE2L2:-0.877637709594;TLX2:-0.889442155047;MTF1:-0.890829453485;NFE2L1:-0.894383194931;RORA:-0.905841423643;PDX1:-0.926805889912;IRF7:-0.969460012421;IRF1,2:-0.986708344496;FOXN1:-0.986906471961;ZNF148:-1.01664495766;GCM1,2:-1.02925163119;MAZ:-1.03370098536;NFIX:-1.0605028423;ESR1:-1.06457603483;HIF1A:-1.09463482757;TFAP2{A,C}:-1.1685198049;TBX4,5:-1.19261736489;MAFB:-1.23208375814;SRF:-1.23796503304;TGIF1:-1.29287869291;TFAP4:-1.32048171095;NFATC1..3:-1.33294754186;STAT2,4,6:-1.4028341516;EP300:-1.60913036927;RXRA_VDR{dimer}:-1.83355261837;TFCP2:-2.34222650853
|top_motifs=TOPORS:1.93233708865;PAX4:1.81201177638;POU1F1:1.7605381254;PITX1..3:1.68350006909;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58188084132;FOXP1:1.54971737937;CDX1,2,4:1.49326718469;E2F1..5:1.44375690212;NRF1:1.36132282276;CRX:1.35556070523;ZBTB16:1.35333740351;NFY{A,B,C}:1.29733075684;TEF:1.29505171912;YY1:1.19169434228;ZNF143:1.17625804436;FOXD3:1.15865222345;IKZF2:1.15616865249;PBX1:1.08343717498;SOX{8,9,10}:1.07848039849;ELK1,4_GABP{A,B1}:1.05232146183;DBP:1.00410716419;HOXA9_MEIS1:0.998349986515;NANOG:0.949791219122;ARID5B:0.946805052923;AIRE:0.93419848378;NKX6-1,2:0.90109111904;PAX6:0.800465730929;ADNP_IRX_SIX_ZHX:0.777631306636;LHX3,4:0.773802294661;HOX{A5,B5}:0.771715205424;PAX8:0.768292248317;PRRX1,2:0.752560883707;PAX1,9:0.737980739673;ALX1:0.716698035979;OCT4_SOX2{dimer}:0.70155835145;PAX3,7:0.676282032545;ZNF384:0.635560591564;GFI1:0.633235834032;TFDP1:0.629671949453;BREu{core}:0.628124222812;RFX1:0.587358964762;STAT5{A,B}:0.550562898888;CUX2:0.537727322834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.50332147358;RBPJ:0.499851120688;NKX3-1:0.494732613839;POU6F1:0.46770591525;POU3F1..4:0.463934114495;FOXQ1:0.434142794384;SOX5:0.429477777548;bHLH_family:0.418930166171;HOX{A4,D4}:0.41620328976;SOX17:0.389414828776;PRDM1:0.379662537953;EN1,2:0.344763412739;AHR_ARNT_ARNT2:0.320580449213;RFX2..5_RFXANK_RFXAP:0.271449222955;FOXA2:0.24926579663;GATA6:0.240714910401;FOXL1:0.234408002506;ONECUT1,2:0.223277888922;POU2F1..3:0.213955105944;EVI1:0.213117238553;HOX{A6,A7,B6,B7}:0.20740627749;NKX2-3_NKX2-5:0.200448678569;NKX2-2,8:0.183021181002;STAT1,3:0.181952592405;TLX1..3_NFIC{dimer}:0.16893098341;MYB:0.151588246109;ATF4:0.124154187122;CREB1:0.1078690984;HES1:0.104826716329;KLF4:0.0992706532776;PPARG:0.0786009077352;CDC5L:0.0722737469334;ZIC1..3:0.0679178768826;LEF1_TCF7_TCF7L1,2:0.0652996779367;FOXM1:0.0504059809298;NR5A1,2:0.023758795792;GTF2A1,2:0.0213776798882;EGR1..3:-0.00403490363246;POU5F1:-0.0350094065432;MYBL2:-0.0641954247091;UFEwm:-0.0653907925249;ATF5_CREB3:-0.0693974903381;ZFP161:-0.0813027933204;NKX2-1,4:-0.101054208923;RXR{A,B,G}:-0.109707893045;AR:-0.118718727408;MEF2{A,B,C,D}:-0.119126280499;FOXP3:-0.128749195508;HNF1A:-0.143179310256;RUNX1..3:-0.149839821411;PAX5:-0.151178257277;GATA4:-0.162716651286;GFI1B:-0.179681070531;HIC1:-0.180417989159;VSX1,2:-0.184259500526;XBP1:-0.191053009187;REST:-0.196856539003;HNF4A_NR2F1,2:-0.20636620155;DMAP1_NCOR{1,2}_SMARC:-0.207950434614;ELF1,2,4:-0.221170129547;ZBTB6:-0.22556475296;SNAI1..3:-0.226374681891;HSF1,2:-0.265256684278;HBP1_HMGB_SSRP1_UBTF:-0.284124452531;IKZF1:-0.29656469399;FOX{I1,J2}:-0.30234698581;ESRRA:-0.31090335533;HMGA1,2:-0.313833685057;GTF2I:-0.341698229697;BPTF:-0.351922457386;ZEB1:-0.357051805521;SPIB:-0.365767966842;RREB1:-0.368279195288;NFIL3:-0.415362850502;FOX{D1,D2}:-0.426495640081;NR1H4:-0.427223883954;ALX4:-0.451786550769;ATF2:-0.46808875096;CEBPA,B_DDIT3:-0.470204940001;NR6A1:-0.471358351285;ZNF423:-0.480182067686;XCPE1{core}:-0.498199916347;NANOG{mouse}:-0.504042014968;SP1:-0.504061227518;PAX2:-0.505723587336;TEAD1:-0.515550771301;TP53:-0.519594705253;FOSL2:-0.52445520016;NKX3-2:-0.526737705636;PATZ1:-0.52961032877;HAND1,2:-0.534743180492;NFKB1_REL_RELA:-0.536706688929;T:-0.555166844484;SOX2:-0.579192015565;TFAP2B:-0.581799735182;GLI1..3:-0.588372368428;JUN:-0.597097896945;SPI1:-0.615569491359;TAL1_TCF{3,4,12}:-0.628734690832;LMO2:-0.637157853685;MZF1:-0.641884381702;SREBF1,2:-0.642076451479;NFE2:-0.669171988876;MYFfamily:-0.669994323233;GZF1:-0.697017147081;ZNF238:-0.713979097296;SMAD1..7,9:-0.729708106522;ETS1,2:-0.745302413486;FOS_FOS{B,L1}_JUN{B,D}:-0.747411751925;BACH2:-0.756978421607;NHLH1,2:-0.759113634073;EBF1:-0.773874608475;TBP:-0.775382467016;FOX{F1,F2,J1}:-0.777348334814;HLF:-0.778397149323;ATF6:-0.778436965442;MTE{core}:-0.787957974428;FOXO1,3,4:-0.794632180637;MED-1{core}:-0.804962120468;MYOD1:-0.829803470418;HMX1:-0.844860509727;SPZ1:-0.846155858496;NR3C1:-0.856221893964;NFE2L2:-0.877637709594;TLX2:-0.889442155047;MTF1:-0.890829453485;NFE2L1:-0.894383194931;RORA:-0.905841423643;PDX1:-0.926805889912;IRF7:-0.969460012421;IRF1,2:-0.986708344496;FOXN1:-0.986906471961;ZNF148:-1.01664495766;GCM1,2:-1.02925163119;MAZ:-1.03370098536;NFIX:-1.0605028423;ESR1:-1.06457603483;HIF1A:-1.09463482757;TFAP2{A,C}:-1.1685198049;TBX4,5:-1.19261736489;MAFB:-1.23208375814;SRF:-1.23796503304;TGIF1:-1.29287869291;TFAP4:-1.32048171095;NFATC1..3:-1.33294754186;STAT2,4,6:-1.4028341516;EP300:-1.60913036927;RXRA_VDR{dimer}:-1.83355261837;TFCP2:-2.34222650853
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10774-110F9;search_select_hide=table117:FF:10774-110F9
}}
}}

Latest revision as of 15:03, 3 June 2020

Name:neuroectodermal tumor cell line:TASK1
Species:Human (Homo sapiens)
Library ID:CNhs11866
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethorax
dev stageNA
sexfemale
age21
cell typeunclassifiable
cell lineTASK1
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005487
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11866 CAGE DRX007966 DRR008838
Accession ID Hg19

Library idBAMCTSS
CNhs11866 DRZ000263 DRZ001648
Accession ID Hg38

Library idBAMCTSS
CNhs11866 DRZ011613 DRZ012998
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.114
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.444
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.085
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0796
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.171
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0.179
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.148
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0441
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.442
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0068
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0508
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.504
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0681
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.225
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0.0681
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0.127
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11866

Jaspar motifP-value
MA0002.20.003
MA0003.10.316
MA0004.10.0563
MA0006.10.0545
MA0007.10.413
MA0009.10.334
MA0014.10.72
MA0017.10.106
MA0018.20.37
MA0019.10.012
MA0024.11.90084e-8
MA0025.10.255
MA0027.10.22
MA0028.18.27716e-4
MA0029.10.878
MA0030.10.125
MA0031.10.412
MA0035.20.561
MA0038.10.0527
MA0039.20.653
MA0040.10.214
MA0041.10.224
MA0042.10.466
MA0043.10.723
MA0046.10.293
MA0047.20.507
MA0048.10.0492
MA0050.17.7863e-10
MA0051.17.55975e-5
MA0052.10.0147
MA0055.13.83195e-4
MA0057.10.606
MA0058.10.029
MA0059.10.0039
MA0060.12.59273e-9
MA0061.10.0189
MA0062.20.00123
MA0065.20.523
MA0066.10.382
MA0067.10.92
MA0068.10.0397
MA0069.10.926
MA0070.10.709
MA0071.10.614
MA0072.10.99
MA0073.10.126
MA0074.10.478
MA0076.17.0469e-5
MA0077.10.528
MA0078.10.513
MA0079.20.102
MA0080.24.96672e-10
MA0081.10.124
MA0083.13.56728e-5
MA0084.10.302
MA0087.10.327
MA0088.12.46323e-4
MA0090.10.173
MA0091.10.376
MA0092.10.478
MA0093.10.0444
MA0099.21.1205e-16
MA0100.10.582
MA0101.10.011
MA0102.20.00419
MA0103.10.9
MA0104.23.25098e-4
MA0105.10.579
MA0106.10.877
MA0107.10.00185
MA0108.22.38491e-4
MA0111.10.722
MA0112.20.00839
MA0113.10.42
MA0114.10.698
MA0115.10.843
MA0116.10.606
MA0117.10.983
MA0119.10.251
MA0122.10.619
MA0124.10.236
MA0125.10.705
MA0131.10.188
MA0135.10.037
MA0136.14.73959e-6
MA0137.20.0324
MA0138.20.557
MA0139.10.945
MA0140.10.762
MA0141.10.99
MA0142.10.982
MA0143.10.327
MA0144.10.00301
MA0145.10.00205
MA0146.10.989
MA0147.17.31634e-5
MA0148.10.474
MA0149.14.80459e-5
MA0150.12.10988e-4
MA0152.10.881
MA0153.10.0383
MA0154.10.321
MA0155.10.369
MA0156.10.0626
MA0157.10.513
MA0159.10.139
MA0160.10.414
MA0162.10.381
MA0163.10.0389
MA0164.10.68
MA0258.10.262
MA0259.10.00844



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11866

Novel motifP-value
10.185
100.367
1000.0667
1010.501
1020.836
1030.0685
1040.641
1050.567
1061.84871e-4
1070.0266
1080.699
1090.703
110.741
1100.419
1110.549
1120.167
1130.172
1140.0576
1150.319
1160.372
1170.318
1180.447
1190.489
120.814
1200.962
1210.715
1220.786
1239.44134e-4
1240.687
1250.766
1260.59
1270.379
1280.0332
1290.722
130.0672
1300.401
1310.147
1320.524
1330.321
1340.372
1350.0589
1360.868
1370.0661
1380.964
1390.82
140.397
1400.572
1410.387
1420.678
1430.0437
1440.807
1450.877
1460.89
1470.756
1480.165
1490.369
150.913
1500.578
1510.33
1520.00507
1530.955
1540.477
1550.678
1560.825
1570.852
1580.264
1590.123
160.345
1600.426
1610.761
1620.545
1630.0543
1640.135
1650.559
1660.971
1670.111
1680.0872
1690.13
170.518
180.283
190.134
20.0126
200.331
210.75
220.16
233.84795e-4
240.66
250.897
260.677
270.234
280.986
290.508
30.554
300.183
310.555
320.0514
330.958
340.285
350.598
360.072
370.272
380.771
390.398
40.739
400.265
410.147
420.254
430.261
440.719
450.302
460.622
470.317
480.266
490.875
50.45
500.957
510.799
520.0526
530.397
540.48
550.24
560.558
570.124
580.557
590.0369
60.148
600.027
610.825
620.213
630.885
640.298
650.304
660.291
670.644
680.737
690.654
70.51
700.149
710.983
720.225
730.0376
740.543
750.338
760.231
770.228
780.359
790.131
80.484
800.061
810.993
820.484
830.924
840.538
850.00357
860.372
870.998
880.601
890.138
90.0705
900.142
910.3
920.188
930.973
940.606
950.839
960.629
970.538
980.815
990.604



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11866


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0002346 (neurectoderm)
0004121 (ectoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)
0010316 (germ layer / neural crest)
0005291 (embryonic tissue)
0010317 (germ layer / neural crest derived structure)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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