FF:11416-118F3: Difference between revisions

Latest revision as of 17:59, 4 June 2020

Name:	Endothelial Cells - Vein, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12026
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	vein
dev stage	infant
sex	female
age	neonatal
cell type	blood vessel endothelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1700
catalog number	CA200-R10n
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005126

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12026		CAGE		DRX008236		DRR009108

Accession ID Hg19

Library id		BAM		CTSS
CNhs12026		DRZ000533		DRZ001918

Accession ID Hg38

Library id		BAM		CTSS
CNhs12026		DRZ011883		DRZ013268

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005126

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10008.GTGGCC		sRNA-Seq		DRX037125		DRR041491

Accession ID Hg19

Library id		BAM		CTSS
SRhi10008.GTGGCC		DRZ007133

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0783
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0871
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.226
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.505
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0141
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.205
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.229
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.211
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0.0153
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.34
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.425
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.296
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.136
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.239
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.614
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.136
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12026

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00243
MA0003.1	MA0003.1	0.559
MA0004.1	MA0004.1	0.765
MA0006.1	MA0006.1	0.0767
MA0007.1	MA0007.1	0.0171
MA0009.1	MA0009.1	0.25
MA0014.1	MA0014.1	0.907
MA0017.1	MA0017.1	0.973
MA0018.2	MA0018.2	2.33448e-5
MA0019.1	MA0019.1	0.0388
MA0024.1	MA0024.1	0.323
MA0025.1	MA0025.1	0.674
MA0027.1	MA0027.1	0.89
MA0028.1	MA0028.1	0.162
MA0029.1	MA0029.1	0.214
MA0030.1	MA0030.1	0.378
MA0031.1	MA0031.1	0.383
MA0035.2	MA0035.2	0.00948
MA0038.1	MA0038.1	0.387
MA0039.2	MA0039.2	0.595
MA0040.1	MA0040.1	0.686
MA0041.1	MA0041.1	0.233
MA0042.1	MA0042.1	0.554
MA0043.1	MA0043.1	1.18914e-8
MA0046.1	MA0046.1	0.845
MA0047.2	MA0047.2	0.344
MA0048.1	MA0048.1	0.077
MA0050.1	MA0050.1	3.6088e-6
MA0051.1	MA0051.1	0.0449
MA0052.1	MA0052.1	0.315
MA0055.1	MA0055.1	0.00304
MA0057.1	MA0057.1	0.244
MA0058.1	MA0058.1	0.966
MA0059.1	MA0059.1	0.8
MA0060.1	MA0060.1	0.0615
MA0061.1	MA0061.1	0.0012
MA0062.2	MA0062.2	0.00949
MA0065.2	MA0065.2	0.849
MA0066.1	MA0066.1	0.763
MA0067.1	MA0067.1	0.0389
MA0068.1	MA0068.1	0.705
MA0069.1	MA0069.1	0.0161
MA0070.1	MA0070.1	0.706
MA0071.1	MA0071.1	0.347
MA0072.1	MA0072.1	0.848
MA0073.1	MA0073.1	0.762
MA0074.1	MA0074.1	0.986
MA0076.1	MA0076.1	0.00153
MA0077.1	MA0077.1	1.63507e-6
MA0078.1	MA0078.1	0.00103
MA0079.2	MA0079.2	0.176
MA0080.2	MA0080.2	0.0597
MA0081.1	MA0081.1	0.327
MA0083.1	MA0083.1	0.472
MA0084.1	MA0084.1	0.245
MA0087.1	MA0087.1	0.386
MA0088.1	MA0088.1	0.634
MA0090.1	MA0090.1	0.388
MA0091.1	MA0091.1	0.866
MA0092.1	MA0092.1	0.812
MA0093.1	MA0093.1	0.752
MA0099.2	MA0099.2	2.91446e-8
MA0100.1	MA0100.1	0.725
MA0101.1	MA0101.1	0.0646
MA0102.2	MA0102.2	9.31862e-7
MA0103.1	MA0103.1	0.0292
MA0104.2	MA0104.2	0.192
MA0105.1	MA0105.1	0.00194
MA0106.1	MA0106.1	0.00401
MA0107.1	MA0107.1	0.0478
MA0108.2	MA0108.2	0.00462
MA0111.1	MA0111.1	0.668
MA0112.2	MA0112.2	0.074
MA0113.1	MA0113.1	0.604
MA0114.1	MA0114.1	0.174
MA0115.1	MA0115.1	0.405
MA0116.1	MA0116.1	0.0241
MA0117.1	MA0117.1	0.267
MA0119.1	MA0119.1	0.354
MA0122.1	MA0122.1	0.153
MA0124.1	MA0124.1	0.765
MA0125.1	MA0125.1	0.835
MA0131.1	MA0131.1	0.897
MA0135.1	MA0135.1	0.334
MA0136.1	MA0136.1	0.242
MA0137.2	MA0137.2	0.00854
MA0138.2	MA0138.2	0.998
MA0139.1	MA0139.1	0.855
MA0140.1	MA0140.1	0.0625
MA0141.1	MA0141.1	0.0889
MA0142.1	MA0142.1	0.708
MA0143.1	MA0143.1	0.819
MA0144.1	MA0144.1	0.633
MA0145.1	MA0145.1	0.593
MA0146.1	MA0146.1	0.781
MA0147.1	MA0147.1	0.538
MA0148.1	MA0148.1	0.233
MA0149.1	MA0149.1	0.0241
MA0150.1	MA0150.1	0.562
MA0152.1	MA0152.1	0.661
MA0153.1	MA0153.1	0.201
MA0154.1	MA0154.1	0.0833
MA0155.1	MA0155.1	0.105
MA0156.1	MA0156.1	0.25
MA0157.1	MA0157.1	0.509
MA0159.1	MA0159.1	0.57
MA0160.1	MA0160.1	0.451
MA0162.1	MA0162.1	0.276
MA0163.1	MA0163.1	0.00209
MA0164.1	MA0164.1	0.225
MA0258.1	MA0258.1	0.275
MA0259.1	MA0259.1	0.771

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12026

Novel motif	Logo	P-value
1	1	0.474
10	10	0.0622
100	100	0.778
101	101	0.0716
102	102	0.879
103	103	0.551
104	104	0.859
105	105	0.303
106	106	0.649
107	107	0.0981
108	108	0.741
109	109	0.227
11	11	0.435
110	110	0.274
111	111	0.865
112	112	0.534
113	113	0.51
114	114	0.666
115	115	0.735
116	116	0.831
117	117	0.785
118	118	0.84
119	119	0.629
12	12	0.42
120	120	0.00404
121	121	0.735
122	122	0.834
123	123	0.00901
124	124	0.00679
125	125	0.828
126	126	0.751
127	127	0.938
128	128	0.466
129	129	0.408
13	13	0.845
130	130	0.704
131	131	0.575
132	132	0.472
133	133	0.578
134	134	0.58
135	135	0.186
136	136	0.0215
137	137	0.0409
138	138	0.97
139	139	0.874
14	14	0.334
140	140	0.553
141	141	0.565
142	142	0.615
143	143	0.0654
144	144	0.384
145	145	0.27
146	146	0.204
147	147	0.2
148	148	0.0667
149	149	0.182
15	15	0.708
150	150	0.131
151	151	0.673
152	152	0.0321
153	153	0.0058
154	154	0.36
155	155	0.253
156	156	0.334
157	157	0.265
158	158	0.0812
159	159	0.616
16	16	0.786
160	160	0.191
161	161	0.0366
162	162	0.768
163	163	0.872
164	164	0.526
165	165	0.448
166	166	0.0868
167	167	0.108
168	168	0.956
169	169	0.335
17	17	0.529
18	18	0.768
19	19	0.985
2	2	0.789
20	20	0.202
21	21	0.723
22	22	0.421
23	23	0.654
24	24	0.887
25	25	0.26
26	26	0.661
27	27	0.979
28	28	0.101
29	29	0.74
3	3	0.449
30	30	0.86
31	31	0.924
32	32	0.324
33	33	0.572
34	34	0.105
35	35	0.144
36	36	0.472
37	37	0.766
38	38	0.951
39	39	0.48
4	4	0.959
40	40	0.136
41	41	0.0565
42	42	0.713
43	43	0.339
44	44	0.925
45	45	0.624
46	46	0.688
47	47	0.757
48	48	0.324
49	49	0.19
5	5	0.53
50	50	0.909
51	51	0.915
52	52	0.27
53	53	0.174
54	54	0.889
55	55	0.143
56	56	0.885
57	57	0.772
58	58	0.0165
59	59	0.648
6	6	0.257
60	60	0.235
61	61	0.911
62	62	0.131
63	63	0.883
64	64	0.918
65	65	0.965
66	66	0.312
67	67	0.959
68	68	0.0767
69	69	0.433
7	7	0.617
70	70	0.179
71	71	0.0262
72	72	0.914
73	73	0.00229
74	74	0.285
75	75	0.898
76	76	0.512
77	77	0.766
78	78	0.902
79	79	0.292
8	8	0.0734
80	80	0.68
81	81	0.163
82	82	0.378
83	83	0.362
84	84	0.516
85	85	0.825
86	86	0.755
87	87	0.0764
88	88	0.595
89	89	0.729
9	9	0.784
90	90	0.488
91	91	0.759
92	92	0.351
93	93	0.644
94	94	0.0799
95	95	0.179
96	96	0.653
97	97	0.653
98	98	0.985
99	99	0.00267

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12026

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000052 human endothelial cell of the vein sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001638,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0005291,UBERON:0000487,UBERON:0001981,UBERON:0003920,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
+|DRA_sample_Accession=CAGE@SAMD00005126
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:0000222,CL:0002543,CL:0002546
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005126
+|accession_numbers=CAGE;DRX008236;DRR009108;DRZ000533;DRZ001918;DRZ011883;DRZ013268
+|accession_numbers_RNASeq=sRNA-Seq;DRX037125;DRR041491;DRZ007133
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.69!644.50!SOX18;;chr21:39870339..39870443,-!p1@ERG!2.05!110.29!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.98!94.72!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.96!90.68!SOX17;;chr17:6926362..6926377,+!p1@BCL6B!1.85!69.43!BCL6B;;chr18:53068911..53068935,-!p4@TCF4!1.71!56.79!TCF4;;chr6:34204921..34204939,+!p3@HMGA1!1.64!1217.19!HMGA1;;chr1:6479968..6479986,-!p1@HES2!1.64!42.32!HES2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.61!39.75!ZBED1;;chr12:96588368..96588394,+!p3@ELK3!1.59!97.65!ELK3;;chr19:13213511..13213545,-!p2@LYL1!1.52!34.44!LYL1;;chr10:94449703..94449718,+!p1@HHEX!1.32!74.93!HHEX;;chr7:27205106..27205134,-!p2@HOXA9!1.26!17.04!HOXA9;;chr19:13213399..13213414,-!p6@LYL1!1.20!14.84!LYL1;;chr16:86600426..86600441,+!p1@FOXC2!1.15!32.06!FOXC2;;chr10:31288370..31288393,-!p3@ZNF438!1.12!12.27!ZNF438;;chr17:46688334..46688385,-!p1@HOXB7!1.10!16.67!HOXB7;;chr19:13213662..13213686,-!p1@LYL1!1.07!15.94!LYL1;;chr22:19748231..19748317,+!p1@TBX1!1.05!10.26!TBX1;;chr18:22932080..22932170,-!p1@ZNF521!1.04!43.05!ZNF521;;chr20:50721803..50721857,-!p2@ZFP64!1.01!14.66!ZFP64;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.81!MECOM;;chr12:66218255..66218304,+!p3@HMGA2!1.00!24.37!HMGA2;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.79!HOXA9;;chr1:47695003..47695042,-!p2@TAL1!0.97!8.24!TAL1;;chr10:94449675..94449694,+!p2@HHEX!0.95!21.80!HHEX;;chr17:41622925..41622976,-!p3@ETV4!0.94!11.72!ETV4;;chr17:46655672..46655697,-!p3@HOXB4!0.94!7.69!HOXB4;;chr4:57522166..57522260,-!p2@HOPX!0.92!8.43!HOPX;;chr1:151032860..151032918,+!p1@MLLT11!0.91!87.57!MLLT11;;chr17:46682321..46682362,-!p1@HOXB6!0.91!7.14!HOXB6;;chr20:50159198..50159299,-!p1@NFATC2!0.89!10.08!NFATC2;;chr6:34204672..34204692,+!p1@HMGA1!0.88!782.45!HMGA1;;chr7:115670804..115670825,-!p1@TFEC!0.87!6.41!TFEC;;chr7:27224842..27224872,-!p1@HOXA11!0.87!6.41!HOXA11;;chr2:177053386..177053402,+!p1@HOXD1!0.87!6.41!HOXD1;;chr13:72441315..72441454,-!p1@DACH1!0.86!12.82!DACH1;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.66!ETV4;;chr10:8096631..8096660,+!p1@GATA3!0.85!7.51!GATA3;;chr3:168864315..168864339,-!p2@MECOM!0.82!9.53!MECOM;;chr19:49865646..49865718,-!p1@TEAD2!0.81!50.20!TEAD2;;chr20:62670299..62670342,-!p8@ZNF512B!0.80!5.31!ZNF512B;;chr17:46690839..46690884,-!p1@HOXB8!0.80!5.31!HOXB8;;chr3:178789522..178789564,-!p2@ZMAT3!0.79!41.04!ZMAT3;;chr19:13213555..13213568,-!p5@LYL1!0.79!5.13!LYL1;;chr1:200008734..200008765,+!p2@NR5A2!0.79!5.13!NR5A2;;chr17:1958388..1958404,+!p1@HIC1!0.78!35.17!HIC1;;chr15:90544532..90544563,+!p1@ZNF710!0.78!10.63!ZNF710;;chr1:151032922..151032951,+!p2@MLLT11!0.77!8.61!MLLT11;;chr2:176994408..176994492,+!p1@HOXD8!0.77!4.95!HOXD8;;chr17:46691732..46691766,-!p4@HOXB8!0.76!4.76!HOXB8;;chr18:53068982..53068993,-!p20@TCF4!0.76!4.76!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.76!4.76!LYL1;;chr11:65429891..65429915,-!p7@RELA!0.76!4.76!RELA;;chr6:21593973..21593988,+!p1@SOX4!0.75!185.58!SOX4;;chr12:66218183..66218209,+!p4@HMGA2!0.75!9.34!HMGA2;;chr7:139741594..139741615,-!p5@PARP12!0.75!4.58!PARP12;;chr17:46687959..46688007,-!p2@HOXB7!0.74!6.41!HOXB7;;chr19:1652555..1652568,-!p2@TCF3!0.73!19.60!TCF3;;chr11:65667884..65667895,-!p2@FOSL1!0.73!18.87!FOSL1;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.23!TEAD2;;chr15:67458491..67458505,+!p18@SMAD3!0.73!4.40!SMAD3;;chr18:53177984..53178004,-!p17@TCF4!0.73!4.40!TCF4;;chr22:38597987..38598021,+!p2@MAFF!0.72!28.76!MAFF;;chr12:66218212..66218244,+!p5@HMGA2!0.72!6.41!HMGA2;;chr8:55370720..55370733,+!p2@SOX17!0.72!4.21!SOX17;;chr3:128206762..128206781,-!p2@GATA2!0.71!28.76!GATA2;;chr20:6748325..6748352,+!p1@BMP2!0.71!6.23!BMP2;;chr7:27195867..27195893,-!p3@HOXA7!0.70!4.03!HOXA7;;chr16:30406423..30406447,+!p4@ZNF48!0.70!4.03!ZNF48;;chr9:16705069..16705086,-!p3@BNC2!0.70!4.03!BNC2;;chr3:25469815..25469866,+!p3@RARB!0.70!4.03!RARB;;chr12:85673977..85674015,+!p1@ALX1!0.70!4.03!ALX1;;chr10:8096772..8096787,+!p2@GATA3!0.69!4.76!GATA3;;chr18:22932004..22932021,-!p2@ZNF521!0.69!3.85!ZNF521;;chr17:41622834..41622883,-!p6@ETV4!0.68!4.76!ETV4;;chr2:85360499..85360598,+!p1@TCF7L1!0.67!23.63!TCF7L1;;chr8:106330656..106330684,+!p1@ZFPM2!0.67!10.63!ZFPM2;;chr11:128563948..128564003,+!p1@FLI1!0.66!49.83!FLI1;;chr7:26191809..26191890,+!p1@NFE2L3!0.66!20.34!NFE2L3;;chr17:41622765..41622821,-!p2@ETV4!0.66!5.86!ETV4;;chr4:146402843..146402864,+!p3@SMAD1!0.65!7.51!SMAD1;;chr10:31288398..31288455,-!p2@ZNF438!0.65!4.21!ZNF438;;chr17:8027418..8027432,-!p1@HES7!0.65!3.48!HES7;;chr7:27196217..27196246,-!p2@HOXA7!0.65!3.48!HOXA7;;chr7:27196267..27196311,-!p1@HOXA7!0.65!3.48!HOXA7;;chr9:14314131..14314147,-!p2@NFIB!0.64!21.98!NFIB;;chr12:66218598..66218645,+!p2@HMGA2!0.64!17.77!HMGA2;;chr5:92918919..92918942,+!p1@NR2F1!0.64!17.40!NR2F1;;chr18:53257001..53257015,-!p5@TCF4!0.64!6.23!TCF4;;chr17:41623009..41623053,-!p4@ETV4!0.64!5.86!ETV4;;chr12:66218836..66218888,+!p1@HMGA2!0.63!36.09!HMGA2;;chr10:94451574..94451587,+!p6@HHEX!0.63!3.30!HHEX;;chr12:66218904..66218913,+!p11@HMGA2!0.63!3.30!HMGA2;;chr4:146404119..146404158,+!p9@SMAD1!0.63!3.30!SMAD1;;chr17:6926381..6926392,+!p2@BCL6B!0.63!3.30!BCL6B;;chr7:27224795..27224840,-!p2@HOXA11!0.63!3.30!HOXA11;;chr17:41623667..41623682,-!p8@ETV4!0.62!3.48!ETV4;;chr20:42295745..42295765,+!p1@MYBL2!0.61!60.27!MYBL2;;chr20:42543441..42543497,+!p1@TOX2!0.61!16.12!TOX2;;chr10:31288329..31288353,-!p7@ZNF438!0.61!3.11!ZNF438;;chr7:27183291..27183324,-!p1@HOXA5!0.61!3.11!HOXA5;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.37!FOXO1;;chr2:74730430..74730451,-!p1@LBX2!0.60!5.31!LBX2;;chr17:46655704..46655718,-!p2@HOXB4!0.60!4.76!HOXB4;;chr4:57522598..57522664,-!p3@HOPX!0.59!2.93!HOPX;;chr13:72441074..72441172,-!p2@DACH1!0.59!2.93!DACH1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!239.08!TAX1BP3;;chr18:22931979..22931992,-!p3@ZNF521!0.57!2.75!ZNF521;;chr18:53068940..53068951,-!p21@TCF4!0.57!2.75!TCF4;;chr20:62680671..62680679,-!p2@SOX18!0.57!2.75!SOX18;;chr9:124991204..124991246,-!p1@LHX6!0.57!2.75!LHX6;;chr3:168865250..168865272,-!p5@MECOM!0.57!2.75!MECOM;;chr7:27213893..27213954,-!p1@HOXA10!0.57!2.75!HOXA10;;chr7:27224911..27224922,-!p5@HOXA11!0.57!2.75!HOXA11;;chr11:65667846..65667868,-!p1@FOSL1!0.56!86.65!FOSL1;;chr6:34204973..34204990,+!p4@HMGA1!0.55!42.69!HMGA1;;chr12:3068544..3068597,+!p1@TEAD4!0.55!19.05!TEAD4;;chr9:116638565..116638606,+!p1@ZNF618!0.55!13.19!ZNF618;;chr17:1959369..1959388,+!p2@HIC1!0.55!7.88!HIC1;;chr9:14083467..14083483,-!p4@NFIB!0.55!7.33!NFIB;;chr20:42543506..42543549,+!p2@TOX2!0.55!7.14!TOX2;;chr20:590944..590960,-!p1@TCF15!0.55!2.56!TCF15;;chr7:27170359..27170381,-!p1@HOXA4!0.55!2.56!HOXA4;;chr7:27192185..27192209,-!p1@HOXA3!0.55!2.56!HOXA3;;chr16:86600458..86600461,+!p3@FOXC2!0.55!2.56!FOXC2;;chr18:53068893..53068902,-!p28@TCF4!0.55!2.56!TCF4;;chr11:65430554..65430579,-!p3@RELA!0.54!7.51!RELA;;chr15:57211660..57211687,+!p6@TCF12!0.54!4.58!TCF12;;chr15:83953397..83953425,-!p1@BNC1!0.54!2.93!BNC1;;chr15:96873984..96873999,+!p3@NR2F2!0.53!22.35!NR2F2;;chr20:42295713..42295738,+!p2@MYBL2!0.53!17.59!MYBL2;;chr5:321810..321877,+!p1@AHRR!0.53!9.34!AHRR;;chr18:19749541..19749557,+!p1@GATA6!0.53!9.16!GATA6;;chr3:25469724..25469773,+!p1@RARB!0.53!3.85!RARB;;chr20:50179368..50179392,-!p2@NFATC2!0.53!3.30!NFATC2;;chr6:21597765..21597779,+!p2@SOX4!0.52!23.82!SOX4;;chr20:48599506..48599526,+!p1@SNAI1!0.52!18.69!SNAI1;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.52!4.40!ELK4;;chr15:96876966..96877017,+!p12@NR2F2!0.52!3.66!NR2F2;;chr15:96874012..96874042,+!p2@NR2F2!0.51!26.01!NR2F2;;chr14:24837368..24837401,+!p1@NFATC4!0.51!6.23!NFATC4;;chr12:3068501..3068515,+!p4@TEAD4!0.51!4.40!TEAD4;;chr1:214161272..214161322,+!p1@PROX1!0.51!3.48!PROX1;;chr4:146402795..146402816,+!p7@SMAD1!0.51!3.30!SMAD1;;chr4:146403912..146403972,+!p5@SMAD1!0.51!3.11!SMAD1;;chr12:10875831..10876025,-!p1@CSDA!0.50!241.46!CSDA;;chr19:45908292..45908374,-!p1@PPP1R13L!0.50!25.28!PPP1R13L;;chr12:3069037..3069119,+!p2@TEAD4!0.50!9.34!TEAD4;;chr14:74256787..74256858,-!p6@C14orf43!0.50!2.20!C14orf43;;chr5:71803177..71803255,-!p1@ZNF366!0.50!2.20!ZNF366;;chr7:27153454..27153469,-!p2@HOXA3!0.50!2.20!HOXA3;;chr7:27183263..27183284,-!p2@HOXA5!0.50!2.20!HOXA5;;chr8:30890810..30890880,-!p1@PURG!0.50!2.20!PURG;;chr18:53255415..53255491,-!p1@TCF4!0.49!23.63!TCF4;;chr15:67357924..67357952,+!p2@SMAD3!0.49!18.32!SMAD3;;chr1:23696448..23696453,-!p5@ZNF436!0.49!2.75!ZNF436;;chr15:96873921..96873946,+!p1@NR2F2!0.48!77.86!NR2F2;;chr13:41240737..41240787,-!p1@FOXO1!0.48!32.43!FOXO1;;chr1:23696308..23696339,-!p2@ZNF436!0.48!5.13!ZNF436;;chr1:221052840..221052875,+!p4@HLX!0.48!2.56!HLX;;chr17:41622982..41623001,-!p11@ETV4!0.48!2.02!ETV4;;chr11:128563652..128563689,+!p3@FLI1!0.48!2.02!FLI1;;chr2:176987441..176987454,+!p1@HOXD9!0.48!2.02!HOXD9;;chr9:14314566..14314618,-!p1@NFIB!0.47!31.88!NFIB;;chr17:3571887..3571918,-!p2@TAX1BP3!0.47!29.31!TAX1BP3;;chr22:38598086..38598105,+!p1@MAFF!0.47!28.21!MAFF;;chr12:2986275..2986363,-!p1@FOXM1!0.47!26.56!FOXM1;;chr5:176738887..176738934,-!p1@MXD3!0.47!17.22!MXD3;;chr12:80084167..80084197,-!p5@PAWR!0.47!5.68!PAWR;;chr2:239756739..239756755,+!p2@TWIST2!0.47!3.85!TWIST2;;chr9:14313893..14313908,-!p7@NFIB!0.47!3.11!NFIB;;chr3:168865194..168865245,-!p3@MECOM!0.47!2.75!MECOM;;chr17:7590797..7590815,-!p1@TP53!0.46!113.04!TP53;;chr19:11071685..11071798,+!p1@SMARCA4!0.46!74.56!SMARCA4;;chr11:62369229..62369289,-!p2@MTA2!0.46!37.74!MTA2;;chr19:1592714..1592762,-!p1@MBD3!0.46!19.60!MBD3;;chr19:56152332..56152347,+!p4@ZNF580!0.46!5.31!ZNF580;;chr6:85474299..85474324,-!p1@TBX18!0.46!4.03!TBX18;;chr3:33482052..33482116,-!p2@UBP1!0.46!3.30!UBP1;;chr1:209979467..209979494,-!p1@IRF6!0.46!2.20!IRF6;;chr2:239756671..239756732,+!p1@TWIST2!0.45!7.69!TWIST2;;chr1:221052733..221052749,+!p2@HLX!0.45!2.56!HLX;;chr12:3068196..3068232,+!p9@TEAD4!0.45!2.02!TEAD4;;chr11:19262461..19262476,-!p5@E2F8!0.45!1.83!E2F8;;chr3:25470156..25470227,+!p2@RARB!0.45!1.83!RARB;;chr6:28321971..28321995,-!p1@ZNF323!0.45!1.83!ZNF323;;chr9:14314946..14314983,-!p8@NFIB!0.45!1.83!NFIB;;chr1:23885981..23886002,-!p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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002543;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
+|ffid_belonging_in_development=CL:0002546,CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor3.CNhs12026.11416-118F3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11416-118F3
-|is_a=EFO:0002091;;FF:0000002;;FF:0000052;;FF:0000210
+|is_a=EFO:0002091;;FF:0000052
+|is_obsolete=
+|library_id=CNhs12026
+|library_id_phase_based=2:CNhs12026
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11416
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTGGCC.11416
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11416
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTGGCC.11416
 |name=Endothelial Cells - Vein, donor3
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12026,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10008,,,
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 |rna_box=118
 |rna_catalog_number=CA200-R10n
@@ Line 56: / Line 82: @@
 |rna_tube_id=118F3
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10008.GTGGCC
 |sample_age=neonatal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 77: / Line 105: @@
 |sample_tissue=vein
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11416-118F3;search_select_hide=table117:FF:11416-118F3
 }}

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FF:11416-118F3: Difference between revisions

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Latest revision as of 17:59, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0