FF:11252-116F1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON: | |DRA_sample_Accession=CAGE@SAMD00005285 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005285 | ||
|accession_numbers=CAGE;DRX008381;DRR009253;DRZ000678;DRZ002063;DRZ012028;DRZ013413 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037216;DRR041582;DRZ007224 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0010317,UBERON:0007844,UBERON:0002242,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002564 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000123 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!2.06!408.19!SIX1;;chr14:37131058..37131139,+!p1@PAX9!1.76!57.17!PAX9;;chr14:37126765..37126799,+!p2@PAX9!1.72!51.41!PAX9;;chr6:85474299..85474324,-!p1@TBX18!1.71!88.71!TBX18;;chr20:21686317..21686350,+!p1@PAX1!1.69!47.85!PAX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.64!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.66!120.11!TWIST1;;chr3:25470156..25470227,+!p2@RARB!1.57!35.83!RARB;;chr20:21686290..21686311,+!p2@PAX1!1.55!34.35!PAX1;;chr12:54393880..54393962,+!p1@HOXC9!1.54!33.86!HOXC9;;chr12:54378923..54378966,+!p1@HOXC10!1.53!33.00!HOXC10;;chr16:86544113..86544145,+!p1@FOXF1!1.52!39.75!FOXF1;;chr7:15726296..15726315,-!p1@MEOX2!1.52!32.02!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!1.50!30.80!HOXA3;;chr9:132427883..132427951,+!p2@PRRX2!1.49!29.94!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.44!34.72!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.42!34.84!FOXF2;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.78!HOXB6;;chr5:158526917..158526932,-!p1@EBF1!1.37!54.60!EBF1;;chr6:1610293..1610310,+!p1@FOXC1!1.37!37.30!FOXC1;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.67!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.54!PRRX1;;chr7:27196217..27196246,-!p2@HOXA7!1.34!20.73!HOXA7;;chr15:57511609..57511651,+!p2@TCF12!1.33!33.62!TCF12;;chr3:147127142..147127168,+!p1@ZIC1!1.31!19.63!ZIC1;;chr16:86600426..86600441,+!p1@FOXC2!1.29!45.15!FOXC2;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.30!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!1.26!17.18!HOXC8;;chr14:61116168..61116180,-!p2@SIX1!1.25!19.39!SIX1;;chr19:45971246..45971265,+!p1@FOSB!1.23!288.57!FOSB;;chr7:15726243..15726293,-!p2@MEOX2!1.22!15.46!MEOX2;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.21!NFIX;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!21.84!ZBTB16;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.21!16.07!GLIS1;;chr12:54379029..54379057,+!p2@HOXC10!1.20!14.97!HOXC10;;chr3:25469815..25469866,+!p3@RARB!1.19!14.48!RARB;;chr3:25469724..25469773,+!p1@RARB!1.18!20.61!RARB;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.25!BARX1;;chr7:19157043..19157088,-!p2@TWIST1!1.13!31.53!TWIST1;;chr14:75745523..75745537,+!p1@FOS!1.12!1436.10!FOS;;chr8:48650715..48650735,-!p1@CEBPD!1.11!1509.35!CEBPD;;chr5:137801160..137801176,+!p1@EGR1!1.11!1186.55!EGR1;;chr5:137804484..137804498,+!p2@EGR1!1.11!47.73!EGR1;;chr1:158969752..158969780,+!p6@IFI16!1.11!20.86!IFI16;;chr8:116673894..116673913,-!p12@TRPS1!1.11!12.02!TRPS1;;chr12:54422217..54422239,+!p3@HOXC6!1.10!11.53!HOXC6;;chr14:61191018..61191048,-!p1@SIX4!1.09!24.91!SIX4;;chr14:37126814..37126834,+!p4@PAX9!1.09!11.41!PAX9;;chr1:59249688..59249703,-!p3@JUN!1.07!65.15!JUN;;chr8:77593474..77593612,+!p1@ZFHX4!1.07!46.13!ZFHX4;;chr1:170632959..170632987,+!p4@PRRX1!1.06!11.53!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!1.06!10.55!HOXA10;;chr8:99956662..99956684,+!p1@OSR2!1.05!15.83!OSR2;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.18!KDM5D;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.05!10.18!HOXC5;;chr2:214015111..214015179,-!p1@IKZF2!1.03!17.67!IKZF2;;chr2:85981107..85981120,+!p3@ATOH8!1.03!9.82!ATOH8;;chr3:147127177..147127194,+!p2@ZIC1!1.03!9.69!ZIC1;;chr7:27205106..27205134,-!p2@HOXA9!1.01!9.32!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.99!57.67!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.98!38.16!PCBP3;;chr22:19748231..19748317,+!p1@TBX1!0.98!8.59!TBX1;;chr17:46675558..46675577,-!p2@HOXB6!0.98!8.59!HOXB6;;chr1:59249707..59249727,-!p1@JUN!0.97!357.28!JUN;;chr12:54402790..54402805,+!p2@HOXC8!0.96!8.22!HOXC8;;chr7:15725757..15725828,-!p5@MEOX2!0.96!8.10!MEOX2;;chr12:115121962..115121987,-!p1@TBX3!0.95!68.09!TBX3;;chr17:46688334..46688385,-!p1@HOXB7!0.95!11.66!HOXB7;;chr19:45260775..45260838,+!p5@BCL3!0.95!10.31!BCL3;;chr4:13546632..13546662,-!p1@NKX3-2!0.95!7.85!NKX3-2;;chr11:46299539..46299620,+!p2@CREB3L1!0.94!13.25!CREB3L1;;chr9:73029219..73029289,-!p2@KLF9!0.93!23.68!KLF9;;chr10:28034739..28034756,-!p1@MKX!0.93!7.61!MKX;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.61!PRRX1;;chr2:214014959..214015006,-!p4@IKZF2!0.93!7.48!IKZF2;;chr5:92918919..92918942,+!p1@NR2F1!0.92!34.23!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!0.92!7.36!SIX2;;chr3:147111231..147111281,+!p3@ZIC1!0.91!7.12!ZIC1;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.79!CREB3L1;;chr12:54402729..54402743,+!p3@HOXC8!0.90!6.87!HOXC8;;chr12:54422245..54422263,+!p7@HOXC6!0.89!6.75!HOXC6;;chr14:24837368..24837401,+!p1@NFATC4!0.87!15.70!NFATC4;;chr7:113726357..113726443,+!p1@FOXP2!0.86!11.04!FOXP2;;chr1:170633262..170633285,+!p3@PRRX1!0.86!7.24!PRRX1;;chr6:85474198..85474212,-!p3@TBX18!0.86!6.26!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.85!145.27!AEBP1;;chr8:49833978..49833996,-!p1@SNAI2!0.85!134.47!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.37!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.05!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.13!ZFY;;chr3:71179699..71179744,-!p2@FOXP1!0.84!47.73!FOXP1;;chr3:12329397..12329433,+!p2@PPARG!0.84!13.99!PPARG;;chr1:158969727..158969749,+!p11@IFI16!0.84!5.89!IFI16;;chr11:113930401..113930422,+!p3@ZBTB16!0.84!5.89!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!0.83!6.75!PPARG;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.77!TCF21;;chr16:79634624..79634642,-!p1@MAF!0.81!23.19!MAF;;chr2:85981222..85981259,+!p2@ATOH8!0.81!9.45!ATOH8;;chr6:45296048..45296082,+!p1@RUNX2!0.81!6.38!RUNX2;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.52!TCF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.81!5.40!PKNOX2;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.43!NFE2L2;;chr7:27183291..27183324,-!p1@HOXA5!0.80!5.28!HOXA5;;chr13:45010939..45011033,-!p1@TSC22D1!0.79!374.21!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.79!25.52!FOXD1;;chr9:16870659..16870675,-!p2@BNC2!0.79!6.50!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.79!5.89!RORB;;chr8:77593448..77593471,+!p2@ZFHX4!0.79!5.15!ZFHX4;;chr3:25470062..25470084,+!p4@RARB!0.79!5.15!RARB;;chr5:92918894..92918912,+!p2@NR2F1!0.78!17.67!NR2F1;;chr9:73028814..73028895,-!p1@KLF9!0.77!52.51!KLF9;;chr12:115122318..115122331,-!p2@TBX3!0.77!4.91!TBX3;;chr14:61190754..61190776,-!p6@SIX4!0.77!4.91!SIX4;;chr6:19837592..19837621,+!p1@ID4!0.76!32.15!ID4;;chr7:27196267..27196311,-!p1@HOXA7!0.76!4.78!HOXA7;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.78!FOXC2;;chr3:187463220..187463232,-!p3@BCL6!0.75!14.97!BCL6;;chr19:49864746..49864780,-!p2@TEAD2!0.75!6.63!TEAD2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.13!FOS;;chr20:48599506..48599526,+!p1@SNAI1!0.74!31.65!SNAI1;;chr16:73093174..73093209,-!p3@ZFHX3!0.74!6.38!ZFHX3;;chr1:59249732..59249749,-!p2@JUN!0.73!58.77!JUN;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.39!KLF5;;chr5:124082322..124082364,-!p1@ZNF608!0.73!12.27!ZNF608;;chr14:61191049..61191080,-!p2@SIX4!0.73!7.97!SIX4;;chr1:47903709..47903764,+!p1@BC169308!0.73!5.03!FOXD2;;chr9:16870710..16870763,-!p1@BNC2!0.72!7.85!BNC2;;chr5:158526459..158526481,-!p2@EBF1!0.72!5.89!EBF1;;chr12:115122005..115122016,-!p3@TBX3!0.72!5.15!TBX3;;chr11:47279248..47279264,+!p3@NR1H3!0.72!4.91!NR1H3;;chr2:5832508..5832524,+!p1@SOX11!0.72!4.29!SOX11;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.29!KCNIP3;;chr21:38071430..38071456,+!p1@SIM2!0.72!4.29!SIM2;;chr3:187463248..187463264,-!p1@BCL6!0.71!101.10!BCL6;;chr3:187463179..187463201,-!p2@BCL6!0.71!18.89!BCL6;;chr16:79633894..79633954,-!p3@MAF!0.71!8.47!MAF;;chr11:113930291..113930339,+!p2@ZBTB16!0.71!7.12!ZBTB16;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.17!CREB3L1;;chr12:54422268..54422278,+!p8@HOXC6!0.71!4.17!HOXC6;;chr7:27196196..27196210,-!p5@HOXA7!0.71!4.17!HOXA7;;chr3:71179746..71179783,-!p7@FOXP1!0.70!15.09!FOXP1;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.15!OSR1;;chr14:21994337..21994442,-!p1@SALL2!0.69!11.78!SALL2;;chr13:37494365..37494381,-!p1@SMAD9!0.69!7.24!SMAD9;;chr8:57123815..57123867,-!p1@PLAG1!0.68!17.30!PLAG1;;chr2:113993052..113993097,-!p2@PAX8!0.68!9.45!PAX8;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.99!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!0.68!4.17!NR2F1;;chr6:1389989..1390019,+!p2@FOXF2!0.68!3.80!FOXF2;;chr2:176994408..176994492,+!p1@HOXD8!0.68!3.80!HOXD8;;chr12:54410948..54410992,+!p3@HOXC5!0.68!3.80!HOXC5;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.13!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.67!16.93!STAT6;;chr10:8096631..8096660,+!p1@GATA3!0.67!4.54!GATA3;;chr3:169381420..169381535,-!p1@MECOM!0.67!4.42!MECOM;;chr5:137804130..137804156,+!p5@EGR1!0.67!3.93!EGR1;;chr17:46690839..46690884,-!p1@HOXB8!0.67!3.68!HOXB8;;chr11:125034605..125034636,+!p2@PKNOX2!0.67!3.68!PKNOX2;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.77!HMGA2;;chr18:22932080..22932170,-!p1@ZNF521!0.66!17.18!ZNF521;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.99!ZFP106;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.66!6.50!MEIS3P1;;chr10:131762504..131762555,-!p1@EBF3!0.66!3.56!EBF3;;chr10:63809013..63809041,+!p3@ARID5B!0.65!22.33!ARID5B;;chr12:54694758..54694805,-!p1@NFE2!0.65!4.29!NFE2;;chr18:53068911..53068935,-!p4@TCF4!0.65!4.05!TCF4;;chr5:158527104..158527135,-!p4@EBF1!0.65!3.44!EBF1;;chr7:15726220..15726236,-!p4@MEOX2!0.65!3.44!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!0.65!3.44!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!0.64!11.90!TBX2;;chr3:12329358..12329393,+!p3@PPARG!0.64!9.20!PPARG;;chr20:30193083..30193098,+!p1@ID1!0.63!313.84!ID1;;chr17:70117153..70117174,+!p1@SOX9!0.63!39.38!SOX9;;chr8:116681409..116681431,-!p2@TRPS1!0.63!10.06!TRPS1;;chr7:27183263..27183284,-!p2@HOXA5!0.63!3.31!HOXA5;;chr15:67391010..67391046,+!p13@SMAD3!0.63!3.31!SMAD3;;chr11:125034586..125034604,+!p3@PKNOX2!0.63!3.31!PKNOX2;;chr1:61547894..61547968,+!p2@NFIA!0.62!10.67!NFIA;;chr3:147111198..147111225,+!p4@ZIC1!0.62!3.19!ZIC1;;chr10:63661437..63661465,+!p2@ARID5B!0.61!71.28!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.61!50.30!ARID5B;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.63!ARID5B;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.61!17.18!GLIS2;;chr19:13134457..13134462,+!p5@NFIX!0.61!6.01!NFIX;;chr7:137564372..137564394,-!p7@CREB3L2!0.61!5.52!CREB3L2;;chr5:92919100..92919135,+!p3@NR2F1!0.61!3.93!NR2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| |expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!2.06!408.19!SIX1;;chr14:37131058..37131139,+!p1@PAX9!1.76!57.17!PAX9;;chr14:37126765..37126799,+!p2@PAX9!1.72!51.41!PAX9;;chr6:85474299..85474324,-!p1@TBX18!1.71!88.71!TBX18;;chr20:21686317..21686350,+!p1@PAX1!1.69!47.85!PAX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.64!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.66!120.11!TWIST1;;chr3:25470156..25470227,+!p2@RARB!1.57!35.83!RARB;;chr20:21686290..21686311,+!p2@PAX1!1.55!34.35!PAX1;;chr12:54393880..54393962,+!p1@HOXC9!1.54!33.86!HOXC9;;chr12:54378923..54378966,+!p1@HOXC10!1.53!33.00!HOXC10;;chr16:86544113..86544145,+!p1@FOXF1!1.52!39.75!FOXF1;;chr7:15726296..15726315,-!p1@MEOX2!1.52!32.02!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!1.50!30.80!HOXA3;;chr9:132427883..132427951,+!p2@PRRX2!1.49!29.94!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.44!34.72!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.42!34.84!FOXF2;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.78!HOXB6;;chr5:158526917..158526932,-!p1@EBF1!1.37!54.60!EBF1;;chr6:1610293..1610310,+!p1@FOXC1!1.37!37.30!FOXC1;;chr1:170633348..170633399,+!p2@PRRX1!1.37!30.67!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.36!24.54!PRRX1;;chr7:27196217..27196246,-!p2@HOXA7!1.34!20.73!HOXA7;;chr15:57511609..57511651,+!p2@TCF12!1.33!33.62!TCF12;;chr3:147127142..147127168,+!p1@ZIC1!1.31!19.63!ZIC1;;chr16:86600426..86600441,+!p1@FOXC2!1.29!45.15!FOXC2;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.30!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!1.26!17.18!HOXC8;;chr14:61116168..61116180,-!p2@SIX1!1.25!19.39!SIX1;;chr19:45971246..45971265,+!p1@FOSB!1.23!288.57!FOSB;;chr7:15726243..15726293,-!p2@MEOX2!1.22!15.46!MEOX2;;chr19:13134772..13134822,+!p2@NFIX!1.21!22.21!NFIX;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!21.84!ZBTB16;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.21!16.07!GLIS1;;chr12:54379029..54379057,+!p2@HOXC10!1.20!14.97!HOXC10;;chr3:25469815..25469866,+!p3@RARB!1.19!14.48!RARB;;chr3:25469724..25469773,+!p1@RARB!1.18!20.61!RARB;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.25!BARX1;;chr7:19157043..19157088,-!p2@TWIST1!1.13!31.53!TWIST1;;chr14:75745523..75745537,+!p1@FOS!1.12!1436.10!FOS;;chr8:48650715..48650735,-!p1@CEBPD!1.11!1509.35!CEBPD;;chr5:137801160..137801176,+!p1@EGR1!1.11!1186.55!EGR1;;chr5:137804484..137804498,+!p2@EGR1!1.11!47.73!EGR1;;chr1:158969752..158969780,+!p6@IFI16!1.11!20.86!IFI16;;chr8:116673894..116673913,-!p12@TRPS1!1.11!12.02!TRPS1;;chr12:54422217..54422239,+!p3@HOXC6!1.10!11.53!HOXC6;;chr14:61191018..61191048,-!p1@SIX4!1.09!24.91!SIX4;;chr14:37126814..37126834,+!p4@PAX9!1.09!11.41!PAX9;;chr1:59249688..59249703,-!p3@JUN!1.07!65.15!JUN;;chr8:77593474..77593612,+!p1@ZFHX4!1.07!46.13!ZFHX4;;chr1:170632959..170632987,+!p4@PRRX1!1.06!11.53!PRRX1;;chr7:27213893..27213954,-!p1@HOXA10!1.06!10.55!HOXA10;;chr8:99956662..99956684,+!p1@OSR2!1.05!15.83!OSR2;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.18!KDM5D;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.05!10.18!HOXC5;;chr2:214015111..214015179,-!p1@IKZF2!1.03!17.67!IKZF2;;chr2:85981107..85981120,+!p3@ATOH8!1.03!9.82!ATOH8;;chr3:147127177..147127194,+!p2@ZIC1!1.03!9.69!ZIC1;;chr7:27205106..27205134,-!p2@HOXA9!1.01!9.32!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.99!57.67!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.98!38.16!PCBP3;;chr22:19748231..19748317,+!p1@TBX1!0.98!8.59!TBX1;;chr17:46675558..46675577,-!p2@HOXB6!0.98!8.59!HOXB6;;chr1:59249707..59249727,-!p1@JUN!0.97!357.28!JUN;;chr12:54402790..54402805,+!p2@HOXC8!0.96!8.22!HOXC8;;chr7:15725757..15725828,-!p5@MEOX2!0.96!8.10!MEOX2;;chr12:115121962..115121987,-!p1@TBX3!0.95!68.09!TBX3;;chr17:46688334..46688385,-!p1@HOXB7!0.95!11.66!HOXB7;;chr19:45260775..45260838,+!p5@BCL3!0.95!10.31!BCL3;;chr4:13546632..13546662,-!p1@NKX3-2!0.95!7.85!NKX3-2;;chr11:46299539..46299620,+!p2@CREB3L1!0.94!13.25!CREB3L1;;chr9:73029219..73029289,-!p2@KLF9!0.93!23.68!KLF9;;chr10:28034739..28034756,-!p1@MKX!0.93!7.61!MKX;;chr1:170632250..170632277,+!p7@PRRX1!0.93!7.61!PRRX1;;chr2:214014959..214015006,-!p4@IKZF2!0.93!7.48!IKZF2;;chr5:92918919..92918942,+!p1@NR2F1!0.92!34.23!NR2F1;;chr2:45236540..45236577,-!p1@SIX2!0.92!7.36!SIX2;;chr3:147111231..147111281,+!p3@ZIC1!0.91!7.12!ZIC1;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.79!CREB3L1;;chr12:54402729..54402743,+!p3@HOXC8!0.90!6.87!HOXC8;;chr12:54422245..54422263,+!p7@HOXC6!0.89!6.75!HOXC6;;chr14:24837368..24837401,+!p1@NFATC4!0.87!15.70!NFATC4;;chr7:113726357..113726443,+!p1@FOXP2!0.86!11.04!FOXP2;;chr1:170633262..170633285,+!p3@PRRX1!0.86!7.24!PRRX1;;chr6:85474198..85474212,-!p3@TBX18!0.86!6.26!TBX18;;chr7:44143925..44143970,+!p1@AEBP1!0.85!145.27!AEBP1;;chr8:49833978..49833996,-!p1@SNAI2!0.85!134.47!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.37!TWIST2;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.05!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.13!ZFY;;chr3:71179699..71179744,-!p2@FOXP1!0.84!47.73!FOXP1;;chr3:12329397..12329433,+!p2@PPARG!0.84!13.99!PPARG;;chr1:158969727..158969749,+!p11@IFI16!0.84!5.89!IFI16;;chr11:113930401..113930422,+!p3@ZBTB16!0.84!5.89!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!0.83!6.75!PPARG;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.77!TCF21;;chr16:79634624..79634642,-!p1@MAF!0.81!23.19!MAF;;chr2:85981222..85981259,+!p2@ATOH8!0.81!9.45!ATOH8;;chr6:45296048..45296082,+!p1@RUNX2!0.81!6.38!RUNX2;;chr15:57511589..57511608,+!p4@TCF12!0.81!5.52!TCF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.81!5.40!PKNOX2;;chr2:178128149..178128198,-!p2@NFE2L2!0.80!30.43!NFE2L2;;chr7:27183291..27183324,-!p1@HOXA5!0.80!5.28!HOXA5;;chr13:45010939..45011033,-!p1@TSC22D1!0.79!374.21!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.79!25.52!FOXD1;;chr9:16870659..16870675,-!p2@BNC2!0.79!6.50!BNC2;;chr9:77112244..77112262,+!p1@RORB!0.79!5.89!RORB;;chr8:77593448..77593471,+!p2@ZFHX4!0.79!5.15!ZFHX4;;chr3:25470062..25470084,+!p4@RARB!0.79!5.15!RARB;;chr5:92918894..92918912,+!p2@NR2F1!0.78!17.67!NR2F1;;chr9:73028814..73028895,-!p1@KLF9!0.77!52.51!KLF9;;chr12:115122318..115122331,-!p2@TBX3!0.77!4.91!TBX3;;chr14:61190754..61190776,-!p6@SIX4!0.77!4.91!SIX4;;chr6:19837592..19837621,+!p1@ID4!0.76!32.15!ID4;;chr7:27196267..27196311,-!p1@HOXA7!0.76!4.78!HOXA7;;chr16:86600870..86600921,+!p2@FOXC2!0.76!4.78!FOXC2;;chr3:187463220..187463232,-!p3@BCL6!0.75!14.97!BCL6;;chr19:49864746..49864780,-!p2@TEAD2!0.75!6.63!TEAD2;;chr14:75746722..75746777,+!p2@FOS!0.75!6.13!FOS;;chr20:48599506..48599526,+!p1@SNAI1!0.74!31.65!SNAI1;;chr16:73093174..73093209,-!p3@ZFHX3!0.74!6.38!ZFHX3;;chr1:59249732..59249749,-!p2@JUN!0.73!58.77!JUN;;chr13:73633131..73633149,+!p1@KLF5!0.73!52.39!KLF5;;chr5:124082322..124082364,-!p1@ZNF608!0.73!12.27!ZNF608;;chr14:61191049..61191080,-!p2@SIX4!0.73!7.97!SIX4;;chr1:47903709..47903764,+!p1@BC169308!0.73!5.03!FOXD2;;chr9:16870710..16870763,-!p1@BNC2!0.72!7.85!BNC2;;chr5:158526459..158526481,-!p2@EBF1!0.72!5.89!EBF1;;chr12:115122005..115122016,-!p3@TBX3!0.72!5.15!TBX3;;chr11:47279248..47279264,+!p3@NR1H3!0.72!4.91!NR1H3;;chr2:5832508..5832524,+!p1@SOX11!0.72!4.29!SOX11;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.29!KCNIP3;;chr21:38071430..38071456,+!p1@SIM2!0.72!4.29!SIM2;;chr3:187463248..187463264,-!p1@BCL6!0.71!101.10!BCL6;;chr3:187463179..187463201,-!p2@BCL6!0.71!18.89!BCL6;;chr16:79633894..79633954,-!p3@MAF!0.71!8.47!MAF;;chr11:113930291..113930339,+!p2@ZBTB16!0.71!7.12!ZBTB16;;chr11:46299443..46299459,+!p4@CREB3L1!0.71!4.17!CREB3L1;;chr12:54422268..54422278,+!p8@HOXC6!0.71!4.17!HOXC6;;chr7:27196196..27196210,-!p5@HOXA7!0.71!4.17!HOXA7;;chr3:71179746..71179783,-!p7@FOXP1!0.70!15.09!FOXP1;;chr2:19558373..19558392,-!p1@OSR1!0.70!12.15!OSR1;;chr14:21994337..21994442,-!p1@SALL2!0.69!11.78!SALL2;;chr13:37494365..37494381,-!p1@SMAD9!0.69!7.24!SMAD9;;chr8:57123815..57123867,-!p1@PLAG1!0.68!17.30!PLAG1;;chr2:113993052..113993097,-!p2@PAX8!0.68!9.45!PAX8;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.99!TWIST2;;chr5:92918956..92918969,+!p4@NR2F1!0.68!4.17!NR2F1;;chr6:1389989..1390019,+!p2@FOXF2!0.68!3.80!FOXF2;;chr2:176994408..176994492,+!p1@HOXD8!0.68!3.80!HOXD8;;chr12:54410948..54410992,+!p3@HOXC5!0.68!3.80!HOXC5;;chr19:13106214..13106382,+!p1@NFIX!0.67!99.13!NFIX;;chr12:57504975..57505019,-!p2@STAT6!0.67!16.93!STAT6;;chr10:8096631..8096660,+!p1@GATA3!0.67!4.54!GATA3;;chr3:169381420..169381535,-!p1@MECOM!0.67!4.42!MECOM;;chr5:137804130..137804156,+!p5@EGR1!0.67!3.93!EGR1;;chr17:46690839..46690884,-!p1@HOXB8!0.67!3.68!HOXB8;;chr11:125034605..125034636,+!p2@PKNOX2!0.67!3.68!PKNOX2;;chr12:66218598..66218645,+!p2@HMGA2!0.66!18.77!HMGA2;;chr18:22932080..22932170,-!p1@ZNF521!0.66!17.18!ZNF521;;chr15:42749722..42749739,-!p2@ZFP106!0.66!6.99!ZFP106;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.66!6.50!MEIS3P1;;chr10:131762504..131762555,-!p1@EBF3!0.66!3.56!EBF3;;chr10:63809013..63809041,+!p3@ARID5B!0.65!22.33!ARID5B;;chr12:54694758..54694805,-!p1@NFE2!0.65!4.29!NFE2;;chr18:53068911..53068935,-!p4@TCF4!0.65!4.05!TCF4;;chr5:158527104..158527135,-!p4@EBF1!0.65!3.44!EBF1;;chr7:15726220..15726236,-!p4@MEOX2!0.65!3.44!MEOX2;;chr19:46801639..46801699,+!p1@HIF3A!0.65!3.44!HIF3A;;chr17:59477233..59477263,+!p1@TBX2!0.64!11.90!TBX2;;chr3:12329358..12329393,+!p3@PPARG!0.64!9.20!PPARG;;chr20:30193083..30193098,+!p1@ID1!0.63!313.84!ID1;;chr17:70117153..70117174,+!p1@SOX9!0.63!39.38!SOX9;;chr8:116681409..116681431,-!p2@TRPS1!0.63!10.06!TRPS1;;chr7:27183263..27183284,-!p2@HOXA5!0.63!3.31!HOXA5;;chr15:67391010..67391046,+!p13@SMAD3!0.63!3.31!SMAD3;;chr11:125034586..125034604,+!p3@PKNOX2!0.63!3.31!PKNOX2;;chr1:61547894..61547968,+!p2@NFIA!0.62!10.67!NFIA;;chr3:147111198..147111225,+!p4@ZIC1!0.62!3.19!ZIC1;;chr10:63661437..63661465,+!p2@ARID5B!0.61!71.28!ARID5B;;chr10:63809106..63809127,+!p1@ARID5B!0.61!50.30!ARID5B;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.63!ARID5B;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.61!17.18!GLIS2;;chr19:13134457..13134462,+!p5@NFIX!0.61!6.01!NFIX;;chr7:137564372..137564394,-!p7@CREB3L2!0.61!5.52!CREB3L2;;chr5:92919100..92919135,+!p3@NR2F1!0.61!3.93!NR2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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002242;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007844;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor1.CNhs10881.11252-116F1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11252-116F1 | |id=FF:11252-116F1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000123 | ||
|is_obsolete= | |||
|library_id=CNhs10881 | |||
|library_id_phase_based=2:CNhs10881 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11252 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.ATGTCA.11252 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11252 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.ATGTCA.11252 | |||
|name=Nucleus Pulposus Cell, donor1 | |name=Nucleus Pulposus Cell, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10881,LSID703,release008,COMPLETED | |profile_hcage=CNhs10881,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0130914394754109,0,-0.27483329820609,-0.282403560576942,0,0,0,0.0814985194619586,0,0,0,0,0,0,0,0,0,-0.017213270223456,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.0502604313716981,0,-0.173104771993362,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.414135586903633,0,0.0466474789006777,0.0502604313716981,-0.0467319298709071,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.136109740124972,0,0,0,0,0,0,0,0,0,0.025130215685849,0,0,0,0,0.00464739230054767,0,0,0,0.0498222003960061,0.00418593559867397,-0.0256998436354056,0,0.173409469561797,0,0,-0.0980353512377064,-0.113346985115046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450517698842034,0.0953029273486504,0,0,-0.137698055503929,-0.275408354151863,0,0,0,0,0,0 | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC4805 | |rna_catalog_number=SC4805 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=116F1 | |rna_tube_id=116F1 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.ATGTCA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.17483872578185e-227!GO:0043231;intracellular membrane-bound organelle;8.21447215242818e-183!GO:0043227;membrane-bound organelle;1.71062820946644e-182!GO:0043226;organelle;3.20108133815169e-181!GO:0043229;intracellular organelle;6.35084101140717e-181!GO:0005737;cytoplasm;6.06242210651115e-175!GO:0044444;cytoplasmic part;2.96827429532428e-128!GO:0044422;organelle part;5.98717629030862e-110!GO:0044446;intracellular organelle part;1.30669017405487e-108!GO:0044238;primary metabolic process;1.12903278016992e-89!GO:0044237;cellular metabolic process;2.00252891576909e-88!GO:0043170;macromolecule metabolic process;2.83115209614735e-82!GO:0032991;macromolecular complex;7.42732485350761e-77!GO:0005515;protein binding;5.81047504483359e-76!GO:0030529;ribonucleoprotein complex;7.35396923780911e-76!GO:0005634;nucleus;2.27302629514317e-70!GO:0043233;organelle lumen;6.21803076464959e-65!GO:0031974;membrane-enclosed lumen;6.21803076464959e-65!GO:0003723;RNA binding;2.35090501726853e-61!GO:0044428;nuclear part;2.7476682455024e-59!GO:0005739;mitochondrion;5.06052483751673e-56!GO:0010467;gene expression;2.02731360175156e-50!GO:0005840;ribosome;2.13354960268597e-47!GO:0031090;organelle membrane;6.427386400334e-47!GO:0043283;biopolymer metabolic process;1.61193205211414e-45!GO:0019538;protein metabolic process;1.80499249201654e-45!GO:0016043;cellular component organization and biogenesis;2.87349712345375e-44!GO:0006412;translation;8.20229969031294e-43!GO:0015031;protein transport;2.49165123797358e-42!GO:0033036;macromolecule localization;4.5711695884583e-42!GO:0003735;structural constituent of ribosome;2.1027984028263e-41!GO:0044260;cellular macromolecule metabolic process;2.50348360596853e-41!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.58212434761859e-40!GO:0044267;cellular protein metabolic process;1.16099013123548e-39!GO:0045184;establishment of protein localization;1.86868343932631e-39!GO:0008104;protein localization;2.51162848898477e-39!GO:0006396;RNA processing;8.9436632407218e-39!GO:0031981;nuclear lumen;1.38225811798535e-38!GO:0044429;mitochondrial part;7.2389823266155e-38!GO:0043234;protein complex;2.12630673485214e-36!GO:0009059;macromolecule biosynthetic process;7.88183396753849e-36!GO:0033279;ribosomal subunit;1.15980242235578e-35!GO:0009058;biosynthetic process;1.3343360614547e-35!GO:0005829;cytosol;2.24803352027241e-35!GO:0016071;mRNA metabolic process;8.74485796658967e-35!GO:0044249;cellular biosynthetic process;8.11228363297476e-32!GO:0008380;RNA splicing;2.34549108378036e-31!GO:0031967;organelle envelope;1.45459863447828e-30!GO:0031975;envelope;3.19607032218006e-30!GO:0006397;mRNA processing;2.41770779993895e-29!GO:0046907;intracellular transport;2.28370753082496e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.31837476352823e-28!GO:0003676;nucleic acid binding;1.20637035302249e-27!GO:0006886;intracellular protein transport;6.64575379787405e-27!GO:0065003;macromolecular complex assembly;7.10786451679388e-27!GO:0016070;RNA metabolic process;1.03994173120588e-25!GO:0005654;nucleoplasm;2.58569575048291e-25!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.45331106769328e-25!GO:0005740;mitochondrial envelope;5.54232524420065e-24!GO:0022607;cellular component assembly;8.01360299268357e-24!GO:0031966;mitochondrial membrane;7.04139839751772e-23!GO:0005681;spliceosome;3.9426030496922e-22!GO:0019866;organelle inner membrane;5.94686908388416e-22!GO:0044451;nucleoplasm part;6.80287755090834e-22!GO:0008134;transcription factor binding;2.59295595661855e-21!GO:0006996;organelle organization and biogenesis;3.12636480592476e-21!GO:0005783;endoplasmic reticulum;3.56581977692952e-21!GO:0005743;mitochondrial inner membrane;1.17895109864576e-20!GO:0044445;cytosolic part;2.76709436285542e-20!GO:0006457;protein folding;2.44280381421703e-19!GO:0015935;small ribosomal subunit;2.9217792374461e-19!GO:0006119;oxidative phosphorylation;6.31687442831485e-19!GO:0012505;endomembrane system;8.87263135990026e-19!GO:0048770;pigment granule;3.50318124493715e-18!GO:0042470;melanosome;3.50318124493715e-18!GO:0043228;non-membrane-bound organelle;5.08663412287167e-18!GO:0043232;intracellular non-membrane-bound organelle;5.08663412287167e-18!GO:0005794;Golgi apparatus;5.18684694440523e-18!GO:0051649;establishment of cellular localization;1.98992882566822e-17!GO:0015934;large ribosomal subunit;2.16155586289482e-17!GO:0051641;cellular localization;3.61168593558142e-17!GO:0031980;mitochondrial lumen;3.67972962358778e-17!GO:0005759;mitochondrial matrix;3.67972962358778e-17!GO:0022618;protein-RNA complex assembly;4.37101467920439e-17!GO:0044432;endoplasmic reticulum part;5.50393121749331e-17!GO:0044455;mitochondrial membrane part;1.87682619306228e-16!GO:0006512;ubiquitin cycle;2.62251058346001e-16!GO:0016874;ligase activity;1.86318342971161e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.72688983257975e-15!GO:0050794;regulation of cellular process;6.98316453515035e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;8.01839144908507e-15!GO:0044265;cellular macromolecule catabolic process;1.28236914181585e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.28236914181585e-14!GO:0006259;DNA metabolic process;1.42708125103103e-14!GO:0019941;modification-dependent protein catabolic process;1.76903882222366e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.76903882222366e-14!GO:0006605;protein targeting;1.80306367222368e-14!GO:0016192;vesicle-mediated transport;2.46678739524365e-14!GO:0044257;cellular protein catabolic process;2.6642111300919e-14!GO:0016462;pyrophosphatase activity;2.98620001885757e-14!GO:0043285;biopolymer catabolic process;3.48744106868216e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.66213785916867e-14!GO:0005746;mitochondrial respiratory chain;3.81844621763737e-14!GO:0008135;translation factor activity, nucleic acid binding;3.8402572156179e-14!GO:0005730;nucleolus;3.90274092434777e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;4.30570201218541e-14!GO:0051186;cofactor metabolic process;4.80002366681793e-14!GO:0048193;Golgi vesicle transport;1.11019763905185e-13!GO:0017111;nucleoside-triphosphatase activity;1.24129421020747e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.74546474915323e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.08462759872854e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.35985412795683e-13!GO:0000166;nucleotide binding;9.42796096424698e-13!GO:0003712;transcription cofactor activity;1.14023551726422e-12!GO:0051082;unfolded protein binding;1.21640380897287e-12!GO:0005793;ER-Golgi intermediate compartment;1.21640380897287e-12!GO:0030163;protein catabolic process;1.50326009051718e-12!GO:0009057;macromolecule catabolic process;1.56351155845e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.44184974590955e-12!GO:0003954;NADH dehydrogenase activity;2.44184974590955e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.44184974590955e-12!GO:0044248;cellular catabolic process;2.44184974590955e-12!GO:0050789;regulation of biological process;3.13707486401959e-12!GO:0005761;mitochondrial ribosome;3.13707486401959e-12!GO:0000313;organellar ribosome;3.13707486401959e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.57847723869638e-12!GO:0005789;endoplasmic reticulum membrane;7.85174818642864e-12!GO:0006366;transcription from RNA polymerase II promoter;1.15401847702311e-11!GO:0003743;translation initiation factor activity;1.34308977564588e-11!GO:0006732;coenzyme metabolic process;2.51959318943757e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.47355626192098e-11!GO:0000375;RNA splicing, via transesterification reactions;3.47355626192098e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.47355626192098e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.13461228627745e-11!GO:0042773;ATP synthesis coupled electron transport;5.13461228627745e-11!GO:0006413;translational initiation;9.38810587366251e-11!GO:0043412;biopolymer modification;9.68324363862459e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.22853611717144e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.33009011465592e-10!GO:0045271;respiratory chain complex I;1.33009011465592e-10!GO:0005747;mitochondrial respiratory chain complex I;1.33009011465592e-10!GO:0019222;regulation of metabolic process;1.40952628092355e-10!GO:0016604;nuclear body;1.8784651469117e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.86400987583469e-10!GO:0006446;regulation of translational initiation;7.04805636785763e-10!GO:0048523;negative regulation of cellular process;7.39597500617509e-10!GO:0006913;nucleocytoplasmic transport;1.51399836816998e-09!GO:0006464;protein modification process;1.5410101420541e-09!GO:0012501;programmed cell death;3.84709091432755e-09!GO:0051169;nuclear transport;3.87703284570262e-09!GO:0045333;cellular respiration;3.90565487467085e-09!GO:0042254;ribosome biogenesis and assembly;4.63733011943713e-09!GO:0005768;endosome;4.7733014786829e-09!GO:0008565;protein transporter activity;6.61195719363105e-09!GO:0017038;protein import;6.86976828040787e-09!GO:0006915;apoptosis;7.8523619022625e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;8.1177192083122e-09!GO:0009060;aerobic respiration;8.51652735776242e-09!GO:0016607;nuclear speck;1.41564414064005e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.47364024899686e-08!GO:0008639;small protein conjugating enzyme activity;1.53277922855632e-08!GO:0008219;cell death;1.72492179216679e-08!GO:0016265;death;1.72492179216679e-08!GO:0019787;small conjugating protein ligase activity;2.0436405755765e-08!GO:0009150;purine ribonucleotide metabolic process;2.50782979817911e-08!GO:0006163;purine nucleotide metabolic process;2.545524571051e-08!GO:0004842;ubiquitin-protein ligase activity;2.55544547551877e-08!GO:0009259;ribonucleotide metabolic process;2.66254184534264e-08!GO:0009055;electron carrier activity;2.82584495792328e-08!GO:0006323;DNA packaging;3.1300713503836e-08!GO:0048519;negative regulation of biological process;3.98872740914119e-08!GO:0006461;protein complex assembly;4.78372193249258e-08!GO:0043687;post-translational protein modification;6.05137792095743e-08!GO:0016563;transcription activator activity;7.35035980812141e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.40859571138481e-08!GO:0031965;nuclear membrane;8.48836881528861e-08!GO:0009152;purine ribonucleotide biosynthetic process;8.48836881528861e-08!GO:0006164;purine nucleotide biosynthetic process;9.00421351847691e-08!GO:0065007;biological regulation;9.15682600029648e-08!GO:0006888;ER to Golgi vesicle-mediated transport;9.7250170841488e-08!GO:0031323;regulation of cellular metabolic process;9.83576619474409e-08!GO:0005635;nuclear envelope;1.02615706204697e-07!GO:0003713;transcription coactivator activity;1.04279015279389e-07!GO:0017076;purine nucleotide binding;1.17719902952657e-07!GO:0016491;oxidoreductase activity;1.21277155208956e-07!GO:0048475;coated membrane;1.48784253563999e-07!GO:0030117;membrane coat;1.48784253563999e-07!GO:0007049;cell cycle;1.75377922353095e-07!GO:0030120;vesicle coat;1.83331246224468e-07!GO:0030662;coated vesicle membrane;1.83331246224468e-07!GO:0044431;Golgi apparatus part;1.87351817218572e-07!GO:0006350;transcription;1.87498417382091e-07!GO:0009260;ribonucleotide biosynthetic process;1.95583957487557e-07!GO:0006099;tricarboxylic acid cycle;2.13195567211685e-07!GO:0046356;acetyl-CoA catabolic process;2.13195567211685e-07!GO:0016564;transcription repressor activity;2.39330638883075e-07!GO:0032553;ribonucleotide binding;2.44083615026683e-07!GO:0032555;purine ribonucleotide binding;2.44083615026683e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.5882664948389e-07!GO:0051276;chromosome organization and biogenesis;2.88746471596448e-07!GO:0009056;catabolic process;2.9498020690266e-07!GO:0031324;negative regulation of cellular metabolic process;2.95332035747862e-07!GO:0015986;ATP synthesis coupled proton transport;2.95332035747862e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.95332035747862e-07!GO:0003924;GTPase activity;3.2028201518392e-07!GO:0006974;response to DNA damage stimulus;3.96055015380455e-07!GO:0051246;regulation of protein metabolic process;4.10441855731576e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.54125551882824e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.54125551882824e-07!GO:0044440;endosomal part;4.68902337882e-07!GO:0010008;endosome membrane;4.68902337882e-07!GO:0005667;transcription factor complex;4.70667949878784e-07!GO:0016881;acid-amino acid ligase activity;5.24354674197893e-07!GO:0015980;energy derivation by oxidation of organic compounds;5.37412973919319e-07!GO:0005788;endoplasmic reticulum lumen;5.56961192198464e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.56961192198464e-07!GO:0010468;regulation of gene expression;6.89505799004577e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.08162544802782e-07!GO:0051187;cofactor catabolic process;7.10286128156252e-07!GO:0031982;vesicle;7.11801238526948e-07!GO:0009141;nucleoside triphosphate metabolic process;7.80360890177201e-07!GO:0031410;cytoplasmic vesicle;7.80360890177201e-07!GO:0009109;coenzyme catabolic process;8.58072552481934e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.58072552481934e-07!GO:0004386;helicase activity;8.58072552481934e-07!GO:0019829;cation-transporting ATPase activity;9.02866884368085e-07!GO:0006084;acetyl-CoA metabolic process;9.25166625586314e-07!GO:0031988;membrane-bound vesicle;9.45901147681325e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.50167067710483e-07!GO:0043566;structure-specific DNA binding;9.59993221500619e-07!GO:0044453;nuclear membrane part;1.06741076666068e-06!GO:0016568;chromatin modification;1.07306325940268e-06!GO:0005770;late endosome;1.07554228254723e-06!GO:0016887;ATPase activity;1.0808448803747e-06!GO:0046034;ATP metabolic process;1.15835780452979e-06!GO:0008026;ATP-dependent helicase activity;1.211762735526e-06!GO:0008361;regulation of cell size;1.42936860230286e-06!GO:0042623;ATPase activity, coupled;1.48213376898359e-06!GO:0051170;nuclear import;1.79487378733277e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.90070726365063e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.90070726365063e-06!GO:0016481;negative regulation of transcription;2.00504496467776e-06!GO:0051188;cofactor biosynthetic process;2.09940627864757e-06!GO:0006606;protein import into nucleus;2.10220674932288e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.14836157699699e-06!GO:0016049;cell growth;2.20451323166737e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.36468632927198e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.39254777179391e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.39254777179391e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.52250923881325e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.82459448031493e-06!GO:0009892;negative regulation of metabolic process;3.14642184689976e-06!GO:0005773;vacuole;3.70770963200443e-06!GO:0000151;ubiquitin ligase complex;3.73805263904444e-06!GO:0006754;ATP biosynthetic process;4.30092973690381e-06!GO:0006753;nucleoside phosphate metabolic process;4.30092973690381e-06!GO:0065002;intracellular protein transport across a membrane;4.52248845542414e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.55341089947213e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.61924448079842e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.76415752581432e-06!GO:0000245;spliceosome assembly;4.90319017230847e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.9341700581857e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.61440834385351e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.00590156654075e-06!GO:0004812;aminoacyl-tRNA ligase activity;6.00590156654075e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.00590156654075e-06!GO:0065004;protein-DNA complex assembly;6.09157827166203e-06!GO:0030532;small nuclear ribonucleoprotein complex;6.74492216270599e-06!GO:0001558;regulation of cell growth;7.22788713239593e-06!GO:0005798;Golgi-associated vesicle;7.25629779612577e-06!GO:0031252;leading edge;7.50144256629153e-06!GO:0006364;rRNA processing;7.87622722965776e-06!GO:0045786;negative regulation of progression through cell cycle;8.36253761094358e-06!GO:0032774;RNA biosynthetic process;8.94356567985883e-06!GO:0016859;cis-trans isomerase activity;8.94356567985883e-06!GO:0006091;generation of precursor metabolites and energy;8.94356567985883e-06!GO:0006613;cotranslational protein targeting to membrane;9.4786257484104e-06!GO:0006351;transcription, DNA-dependent;9.6754008220493e-06!GO:0042981;regulation of apoptosis;9.72897766929991e-06!GO:0043038;amino acid activation;9.83281219094677e-06!GO:0006418;tRNA aminoacylation for protein translation;9.83281219094677e-06!GO:0043039;tRNA aminoacylation;9.83281219094677e-06!GO:0045259;proton-transporting ATP synthase complex;1.01976314062606e-05!GO:0008654;phospholipid biosynthetic process;1.05998840087407e-05!GO:0043067;regulation of programmed cell death;1.12890946771372e-05!GO:0030133;transport vesicle;1.15258610413592e-05!GO:0016072;rRNA metabolic process;1.26047663670666e-05!GO:0032446;protein modification by small protein conjugation;1.26442867689438e-05!GO:0043069;negative regulation of programmed cell death;1.30146503517611e-05!GO:0003697;single-stranded DNA binding;1.37978731633499e-05!GO:0003714;transcription corepressor activity;1.49745517153603e-05!GO:0043066;negative regulation of apoptosis;1.58498219592469e-05!GO:0016853;isomerase activity;1.59894801588232e-05!GO:0000139;Golgi membrane;1.60438387545568e-05!GO:0006399;tRNA metabolic process;1.60438387545568e-05!GO:0000323;lytic vacuole;1.65520344179717e-05!GO:0005764;lysosome;1.65520344179717e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.73668937620276e-05!GO:0016567;protein ubiquitination;1.86520824849294e-05!GO:0006281;DNA repair;1.8790950783533e-05!GO:0005643;nuclear pore;1.97835740390296e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.33227034700348e-05!GO:0009117;nucleotide metabolic process;2.49970351700843e-05!GO:0009719;response to endogenous stimulus;2.53372356694578e-05!GO:0050657;nucleic acid transport;2.68361112110695e-05!GO:0051236;establishment of RNA localization;2.68361112110695e-05!GO:0050658;RNA transport;2.68361112110695e-05!GO:0000074;regulation of progression through cell cycle;2.69672461130267e-05!GO:0004298;threonine endopeptidase activity;2.74854031465327e-05!GO:0045449;regulation of transcription;2.85025619227571e-05!GO:0051726;regulation of cell cycle;2.91247064190451e-05!GO:0006333;chromatin assembly or disassembly;2.93365593115804e-05!GO:0009108;coenzyme biosynthetic process;3.15362208807074e-05!GO:0030554;adenyl nucleotide binding;3.37996330731837e-05!GO:0019843;rRNA binding;3.49217539112637e-05!GO:0006403;RNA localization;3.7958355947678e-05!GO:0006916;anti-apoptosis;4.18172334492659e-05!GO:0005525;GTP binding;4.21881882551783e-05!GO:0005524;ATP binding;4.24693248140603e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.3516262915072e-05!GO:0032559;adenyl ribonucleotide binding;5.62216463319458e-05!GO:0022402;cell cycle process;5.79136601404494e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.79752297356701e-05!GO:0051789;response to protein stimulus;5.95830479231626e-05!GO:0006986;response to unfolded protein;5.95830479231626e-05!GO:0007005;mitochondrion organization and biogenesis;6.16238489374115e-05!GO:0046930;pore complex;6.16238489374115e-05!GO:0005769;early endosome;6.379817099545e-05!GO:0030867;rough endoplasmic reticulum membrane;6.48845641315036e-05!GO:0051427;hormone receptor binding;7.86520487444372e-05!GO:0003724;RNA helicase activity;0.000100244717622388!GO:0019867;outer membrane;0.00011231803179947!GO:0043021;ribonucleoprotein binding;0.000120503542914431!GO:0045892;negative regulation of transcription, DNA-dependent;0.000148491035293818!GO:0031968;organelle outer membrane;0.000149039079864063!GO:0035257;nuclear hormone receptor binding;0.000156943836215019!GO:0005905;coated pit;0.000166808267216336!GO:0048522;positive regulation of cellular process;0.000173311154602827!GO:0019899;enzyme binding;0.000180110660215217!GO:0007243;protein kinase cascade;0.000183339344958215!GO:0040008;regulation of growth;0.000186515291014314!GO:0005741;mitochondrial outer membrane;0.000200619878481339!GO:0005791;rough endoplasmic reticulum;0.0002048507311422!GO:0032561;guanyl ribonucleotide binding;0.000213325885482015!GO:0019001;guanyl nucleotide binding;0.000213325885482015!GO:0006355;regulation of transcription, DNA-dependent;0.000232695680198616!GO:0006752;group transfer coenzyme metabolic process;0.000246494223257284!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000247194613424023!GO:0005762;mitochondrial large ribosomal subunit;0.000254300471202587!GO:0000315;organellar large ribosomal subunit;0.000254300471202587!GO:0033116;ER-Golgi intermediate compartment membrane;0.000280399800518985!GO:0051028;mRNA transport;0.000420473558867599!GO:0045893;positive regulation of transcription, DNA-dependent;0.000431654166053701!GO:0007264;small GTPase mediated signal transduction;0.000445213318514579!GO:0030029;actin filament-based process;0.000447686714567083!GO:0044262;cellular carbohydrate metabolic process;0.000463698563638704!GO:0016044;membrane organization and biogenesis;0.000465088573451942!GO:0006612;protein targeting to membrane;0.000511529479671422!GO:0000785;chromatin;0.000567532029053996!GO:0030663;COPI coated vesicle membrane;0.000583123826797349!GO:0030126;COPI vesicle coat;0.000583123826797349!GO:0005694;chromosome;0.00059089886662956!GO:0000314;organellar small ribosomal subunit;0.000592138607347706!GO:0005763;mitochondrial small ribosomal subunit;0.000592138607347706!GO:0008250;oligosaccharyl transferase complex;0.000592138607347706!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000669192916829287!GO:0004576;oligosaccharyl transferase activity;0.000688993622125422!GO:0005048;signal sequence binding;0.000706891322174396!GO:0016787;hydrolase activity;0.000720652336280551!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000747228235458894!GO:0030521;androgen receptor signaling pathway;0.000760884497436749!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000775663841721654!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000776932800407114!GO:0030027;lamellipodium;0.000782005936753183!GO:0045941;positive regulation of transcription;0.00084034157534319!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000841196752145455!GO:0003729;mRNA binding;0.000849137906556059!GO:0043623;cellular protein complex assembly;0.000918605715112041!GO:0003690;double-stranded DNA binding;0.000923581514729734!GO:0045454;cell redox homeostasis;0.00095178485948878!GO:0046474;glycerophospholipid biosynthetic process;0.000996927390738264!GO:0008186;RNA-dependent ATPase activity;0.00104367648935256!GO:0046467;membrane lipid biosynthetic process;0.00106007456700112!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00111791468458431!GO:0030137;COPI-coated vesicle;0.00112559893087009!GO:0006793;phosphorus metabolic process;0.00115683374148677!GO:0006796;phosphate metabolic process;0.00115683374148677!GO:0005581;collagen;0.00115683374148677!GO:0003702;RNA polymerase II transcription factor activity;0.00118126167131775!GO:0005885;Arp2/3 protein complex;0.00119117217930109!GO:0051920;peroxiredoxin activity;0.00121491192831361!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00144600713605337!GO:0046914;transition metal ion binding;0.00148609412476355!GO:0006891;intra-Golgi vesicle-mediated transport;0.0016014468581567!GO:0008610;lipid biosynthetic process;0.00160265880296722!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00160335206829238!GO:0051287;NAD binding;0.00161460329065248!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00180497422681514!GO:0018196;peptidyl-asparagine modification;0.00198754186911282!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00198754186911282!GO:0006414;translational elongation;0.00199039904932162!GO:0000278;mitotic cell cycle;0.00207012017681424!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00214545064811288!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00214545064811288!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00214545064811288!GO:0043488;regulation of mRNA stability;0.00215852352234666!GO:0043487;regulation of RNA stability;0.00215852352234666!GO:0016740;transferase activity;0.00217576169789979!GO:0048500;signal recognition particle;0.00219766255734179!GO:0004177;aminopeptidase activity;0.00223494265900077!GO:0008154;actin polymerization and/or depolymerization;0.00224428429585296!GO:0048471;perinuclear region of cytoplasm;0.00224663859436274!GO:0006260;DNA replication;0.00234591573282041!GO:0043284;biopolymer biosynthetic process;0.00239489301344817!GO:0051252;regulation of RNA metabolic process;0.00244725259633995!GO:0006352;transcription initiation;0.00254351504643626!GO:0006402;mRNA catabolic process;0.00256275210949488!GO:0016779;nucleotidyltransferase activity;0.00266249427372867!GO:0046489;phosphoinositide biosynthetic process;0.00267153994532296!GO:0043681;protein import into mitochondrion;0.00271028808918617!GO:0007050;cell cycle arrest;0.00275403553207269!GO:0050662;coenzyme binding;0.00284644044634632!GO:0004004;ATP-dependent RNA helicase activity;0.0028727599424051!GO:0006334;nucleosome assembly;0.00306754739824501!GO:0031072;heat shock protein binding;0.00321403176273448!GO:0030118;clathrin coat;0.00322540724618618!GO:0008092;cytoskeletal protein binding;0.00343746519063397!GO:0051128;regulation of cellular component organization and biogenesis;0.00349056208637657!GO:0003899;DNA-directed RNA polymerase activity;0.00363886077455045!GO:0030041;actin filament polymerization;0.00383603388760791!GO:0031497;chromatin assembly;0.00393383599487296!GO:0030134;ER to Golgi transport vesicle;0.0039878406432431!GO:0016126;sterol biosynthetic process;0.00410108739961202!GO:0031901;early endosome membrane;0.00413423142926861!GO:0005813;centrosome;0.0042831989667955!GO:0016197;endosome transport;0.00428772198831357!GO:0031902;late endosome membrane;0.00428772198831357!GO:0008270;zinc ion binding;0.0043136672813349!GO:0006509;membrane protein ectodomain proteolysis;0.00434204102541341!GO:0033619;membrane protein proteolysis;0.00434204102541341!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00438565199799697!GO:0006979;response to oxidative stress;0.00440293784150658!GO:0051101;regulation of DNA binding;0.00470721044652904!GO:0048518;positive regulation of biological process;0.00484810690953085!GO:0030658;transport vesicle membrane;0.00486535457498323!GO:0030518;steroid hormone receptor signaling pathway;0.0049562648685592!GO:0030199;collagen fibril organization;0.00507159002800629!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00511257943526595!GO:0045047;protein targeting to ER;0.00511257943526595!GO:0045045;secretory pathway;0.00511257943526595!GO:0016310;phosphorylation;0.00570825775675009!GO:0008312;7S RNA binding;0.00585306902201867!GO:0044427;chromosomal part;0.0059022732261984!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00592665870441108!GO:0030132;clathrin coat of coated pit;0.00615508591723424!GO:0005869;dynactin complex;0.00657019763188032!GO:0030127;COPII vesicle coat;0.00661289977495093!GO:0012507;ER to Golgi transport vesicle membrane;0.00661289977495093!GO:0016408;C-acyltransferase activity;0.00666716257930892!GO:0031625;ubiquitin protein ligase binding;0.00681610339880975!GO:0035258;steroid hormone receptor binding;0.00689842226925365!GO:0016363;nuclear matrix;0.00703498822678882!GO:0003711;transcription elongation regulator activity;0.00710730274611045!GO:0005815;microtubule organizing center;0.00788181308403241!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00810013070213609!GO:0030880;RNA polymerase complex;0.00811020342742149!GO:0009165;nucleotide biosynthetic process;0.00819380429523765!GO:0051168;nuclear export;0.00849254230792379!GO:0001726;ruffle;0.00858032101512853!GO:0006626;protein targeting to mitochondrion;0.00859290641998607!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00885166827000334!GO:0048487;beta-tubulin binding;0.00891861970822959!GO:0033673;negative regulation of kinase activity;0.00910742554477926!GO:0006469;negative regulation of protein kinase activity;0.00910742554477926!GO:0006897;endocytosis;0.00912335397467938!GO:0010324;membrane invagination;0.00912335397467938!GO:0006740;NADPH regeneration;0.00913453554113636!GO:0006098;pentose-phosphate shunt;0.00913453554113636!GO:0051087;chaperone binding;0.00935096602788103!GO:0005520;insulin-like growth factor binding;0.00974741826877912!GO:0006383;transcription from RNA polymerase III promoter;0.00985086188293637!GO:0042158;lipoprotein biosynthetic process;0.00987110004225268!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00991422857047735!GO:0033043;regulation of organelle organization and biogenesis;0.00991422857047735!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00996643728559026!GO:0017166;vinculin binding;0.0101088620799559!GO:0044420;extracellular matrix part;0.0101088620799559!GO:0006650;glycerophospholipid metabolic process;0.010485025015933!GO:0065009;regulation of a molecular function;0.0107094222271491!GO:0016251;general RNA polymerase II transcription factor activity;0.0107605158901646!GO:0050681;androgen receptor binding;0.0107820061642508!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0108482584877349!GO:0015002;heme-copper terminal oxidase activity;0.0108482584877349!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0108482584877349!GO:0004129;cytochrome-c oxidase activity;0.0108482584877349!GO:0015630;microtubule cytoskeleton;0.0108815156461385!GO:0009967;positive regulation of signal transduction;0.011379488346948!GO:0008180;signalosome;0.011647565333427!GO:0030176;integral to endoplasmic reticulum membrane;0.0117848478570996!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0118921545422662!GO:0015399;primary active transmembrane transporter activity;0.0118921545422662!GO:0000059;protein import into nucleus, docking;0.0118936107694382!GO:0006338;chromatin remodeling;0.0124819367440571!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0125506191660287!GO:0006497;protein amino acid lipidation;0.0125855523212706!GO:0043022;ribosome binding;0.0126894707446528!GO:0008047;enzyme activator activity;0.01303135281673!GO:0051539;4 iron, 4 sulfur cluster binding;0.0130792615701674!GO:0030384;phosphoinositide metabolic process;0.0132721697619711!GO:0030119;AP-type membrane coat adaptor complex;0.0132721697619711!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0132721697619711!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0132721697619711!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0135020890033196!GO:0006695;cholesterol biosynthetic process;0.0135574324582305!GO:0030660;Golgi-associated vesicle membrane;0.0135600636992243!GO:0006595;polyamine metabolic process;0.0139199139456987!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0139986424642308!GO:0006376;mRNA splice site selection;0.0144370323659361!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0144370323659361!GO:0005774;vacuolar membrane;0.0148251962605767!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0150491617855779!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0157241433009815!GO:0000428;DNA-directed RNA polymerase complex;0.0157241433009815!GO:0031543;peptidyl-proline dioxygenase activity;0.0163668548823746!GO:0051348;negative regulation of transferase activity;0.016464424401167!GO:0008139;nuclear localization sequence binding;0.0170665823214064!GO:0030659;cytoplasmic vesicle membrane;0.0170916012875362!GO:0000339;RNA cap binding;0.0171500843303879!GO:0008286;insulin receptor signaling pathway;0.0171736117586315!GO:0003677;DNA binding;0.0174853597783689!GO:0051059;NF-kappaB binding;0.0176175342626104!GO:0022890;inorganic cation transmembrane transporter activity;0.0178364254455249!GO:0006892;post-Golgi vesicle-mediated transport;0.0178364254455249!GO:0031124;mRNA 3'-end processing;0.0180098915986479!GO:0035035;histone acetyltransferase binding;0.018420770135544!GO:0051540;metal cluster binding;0.0189915502458745!GO:0051536;iron-sulfur cluster binding;0.0189915502458745!GO:0050811;GABA receptor binding;0.0202854017266644!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0210051308020284!GO:0006607;NLS-bearing substrate import into nucleus;0.0210473110434855!GO:0051329;interphase of mitotic cell cycle;0.0210473110434855!GO:0005862;muscle thin filament tropomyosin;0.0211140477179439!GO:0006401;RNA catabolic process;0.0211140477179439!GO:0031406;carboxylic acid binding;0.0212369004223334!GO:0016584;nucleosome positioning;0.0215255820719648!GO:0030522;intracellular receptor-mediated signaling pathway;0.0216394870568126!GO:0030131;clathrin adaptor complex;0.0216733136971886!GO:0005100;Rho GTPase activator activity;0.0219727003966086!GO:0005832;chaperonin-containing T-complex;0.0225638924089453!GO:0007040;lysosome organization and biogenesis;0.0227268223813544!GO:0007010;cytoskeleton organization and biogenesis;0.0227268223813544!GO:0032984;macromolecular complex disassembly;0.0228152333161694!GO:0031529;ruffle organization and biogenesis;0.022967435559233!GO:0008097;5S rRNA binding;0.0235813800253513!GO:0048468;cell development;0.0236621269504726!GO:0007006;mitochondrial membrane organization and biogenesis;0.0240039167457092!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0247663529248941!GO:0030833;regulation of actin filament polymerization;0.0247663529248941!GO:0006739;NADP metabolic process;0.0248428584355499!GO:0006818;hydrogen transport;0.0248650749344281!GO:0045792;negative regulation of cell size;0.0250970115046643!GO:0015992;proton transport;0.0251753929859741!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0254062759728583!GO:0008147;structural constituent of bone;0.0257550998863227!GO:0006506;GPI anchor biosynthetic process;0.026055879789015!GO:0016407;acetyltransferase activity;0.0262033985534598!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0264562138993156!GO:0005669;transcription factor TFIID complex;0.0265096612377803!GO:0019798;procollagen-proline dioxygenase activity;0.0266216788252839!GO:0005586;collagen type III;0.0266563268162218!GO:0000118;histone deacetylase complex;0.0267469967437268!GO:0007265;Ras protein signal transduction;0.0268287810375878!GO:0051098;regulation of binding;0.0271592924855186!GO:0006289;nucleotide-excision repair;0.0275982397486446!GO:0006505;GPI anchor metabolic process;0.0279368141905388!GO:0005583;fibrillar collagen;0.0282777532474371!GO:0007033;vacuole organization and biogenesis;0.0289345351890864!GO:0005096;GTPase activator activity;0.0291464876485231!GO:0006635;fatty acid beta-oxidation;0.0291464876485231!GO:0007034;vacuolar transport;0.0296063236530126!GO:0031418;L-ascorbic acid binding;0.0296063236530126!GO:0006643;membrane lipid metabolic process;0.0296680960441083!GO:0030308;negative regulation of cell growth;0.0296864070606476!GO:0032940;secretion by cell;0.030221345048448!GO:0000209;protein polyubiquitination;0.0309084458054531!GO:0043087;regulation of GTPase activity;0.0317178526472886!GO:0005765;lysosomal membrane;0.0325973552770074!GO:0006417;regulation of translation;0.0325973552770074!GO:0004860;protein kinase inhibitor activity;0.0330130803946885!GO:0003746;translation elongation factor activity;0.0330802807325234!GO:0031272;regulation of pseudopodium formation;0.0332766181817737!GO:0031269;pseudopodium formation;0.0332766181817737!GO:0031344;regulation of cell projection organization and biogenesis;0.0332766181817737!GO:0031268;pseudopodium organization and biogenesis;0.0332766181817737!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0332766181817737!GO:0031274;positive regulation of pseudopodium formation;0.0332766181817737!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.033510933358331!GO:0006839;mitochondrial transport;0.0336971810311892!GO:0043624;cellular protein complex disassembly;0.0340053650474263!GO:0044437;vacuolar part;0.0340053650474263!GO:0005637;nuclear inner membrane;0.0348117770192906!GO:0006118;electron transport;0.0352348366309972!GO:0016860;intramolecular oxidoreductase activity;0.0352348366309972!GO:0019752;carboxylic acid metabolic process;0.0355044359586789!GO:0000902;cell morphogenesis;0.0355131583664154!GO:0032989;cellular structure morphogenesis;0.0355131583664154!GO:0004722;protein serine/threonine phosphatase activity;0.0355608640028509!GO:0009303;rRNA transcription;0.0355608640028509!GO:0006769;nicotinamide metabolic process;0.0355608640028509!GO:0044433;cytoplasmic vesicle part;0.0356791329945091!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0359122163555903!GO:0030100;regulation of endocytosis;0.0359824268752046!GO:0008234;cysteine-type peptidase activity;0.0360301637746323!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.03626768787172!GO:0042802;identical protein binding;0.03626768787172!GO:0032535;regulation of cellular component size;0.0364000315333928!GO:0032906;transforming growth factor-beta2 production;0.0366803432976748!GO:0032909;regulation of transforming growth factor-beta2 production;0.0366803432976748!GO:0015631;tubulin binding;0.0371009197701997!GO:0009081;branched chain family amino acid metabolic process;0.0374845388854063!GO:0030125;clathrin vesicle coat;0.0377543736449587!GO:0030665;clathrin coated vesicle membrane;0.0377543736449587!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0379553198060623!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0379553198060623!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0382806659467078!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0392016250670228!GO:0004784;superoxide dismutase activity;0.0392016250670228!GO:0005811;lipid particle;0.039220356516272!GO:0043241;protein complex disassembly;0.039634311501594!GO:0051235;maintenance of localization;0.0400453351465535!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0401051954315521!GO:0051325;interphase;0.0402948857102202!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0403700665226883!GO:0006082;organic acid metabolic process;0.0404856860632919!GO:0030832;regulation of actin filament length;0.0407382631599154!GO:0030032;lamellipodium biogenesis;0.0410318521992395!GO:0044452;nucleolar part;0.0410848989595022!GO:0006693;prostaglandin metabolic process;0.0412233245329114!GO:0006692;prostanoid metabolic process;0.0412233245329114!GO:0009966;regulation of signal transduction;0.0427981104236718!GO:0040029;regulation of gene expression, epigenetic;0.0429688140922024!GO:0005684;U2-dependent spliceosome;0.043222655443527!GO:0006354;RNA elongation;0.0434210755167221!GO:0030145;manganese ion binding;0.04361558463273!GO:0016791;phosphoric monoester hydrolase activity;0.0438062400492389!GO:0048037;cofactor binding;0.0440810700364555!GO:0017134;fibroblast growth factor binding;0.0444336571316692!GO:0030934;anchoring collagen;0.0445114257293489!GO:0030031;cell projection biogenesis;0.0448359043615017!GO:0017091;AU-rich element binding;0.0452171581678834!GO:0050779;RNA destabilization;0.0452171581678834!GO:0000289;poly(A) tail shortening;0.0452171581678834!GO:0012506;vesicle membrane;0.0452171581678834!GO:0045185;maintenance of protein localization;0.0459300651754963!GO:0005017;platelet-derived growth factor receptor activity;0.0459571091396909!GO:0009112;nucleobase metabolic process;0.0461470587803496!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0461470587803496!GO:0007021;tubulin folding;0.0463631658300267!GO:0043492;ATPase activity, coupled to movement of substances;0.0464381320158304!GO:0007569;cell aging;0.0466931938424617!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0469863562484664!GO:0004300;enoyl-CoA hydratase activity;0.0474547953451617!GO:0046620;regulation of organ growth;0.0477052614533152!GO:0031123;RNA 3'-end processing;0.0479339069326749!GO:0046483;heterocycle metabolic process;0.0482828380722397!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0491661227926347!GO:0005784;translocon complex;0.0493637462914731!GO:0000049;tRNA binding;0.0494749542884554!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0494749542884554!GO:0003923;GPI-anchor transamidase activity;0.0498800019625776!GO:0016255;attachment of GPI anchor to protein;0.0498800019625776!GO:0042765;GPI-anchor transamidase complex;0.0498800019625776!GO:0008430;selenium binding;0.0499351287533497 | |||
|sample_id=11252 | |sample_id=11252 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=spinal cord | |sample_tissue=spinal cord | ||
|top_motifs=RXR{A,B,G}:2.12980632281;ATF6:1.81646133565;ZNF238:1.72012135982;FOXL1:1.67922778419;NKX6-1,2:1.50256264308;PATZ1:1.44460740172;TAL1_TCF{3,4,12}:1.43239177531;NR3C1:1.31043779343;GZF1:1.30513826296;MYBL2:1.30037005789;SOX5:1.2709778008;ZNF423:1.26964796969;NR1H4:1.24284856898;EBF1:1.14894579499;NANOG{mouse}:1.146367387;MZF1:1.08985304621;TFAP4:1.07229972722;GFI1B:1.02501224255;KLF4:0.993960954076;MAZ:0.99130200645;NFATC1..3:0.957602693528;GTF2I:0.942194656936;GTF2A1,2:0.93494122119;TLX1..3_NFIC{dimer}:0.930793871064;GLI1..3:0.878520630007;ESR1:0.871073408776;EN1,2:0.835105188167;AIRE:0.833805091995;NR6A1:0.830716794916;PAX5:0.83049406295;TEAD1:0.797027427841;DMAP1_NCOR{1,2}_SMARC:0.796249451141;ZIC1..3:0.790247761842;ZNF384:0.775231527895;UFEwm:0.760521701758;PDX1:0.739698411192;AHR_ARNT_ARNT2:0.735689081937;STAT2,4,6:0.720871643939;NFIX:0.713382356709;STAT1,3:0.707532315656;NKX2-2,8:0.703630695215;MED-1{core}:0.7010661746;HAND1,2:0.698307284206;PAX1,9:0.674138181991;NKX2-3_NKX2-5:0.670963263256;BPTF:0.663936620323;SRF:0.652445445229;PAX4:0.646536837039;RBPJ:0.632233373921;FOXD3:0.627714829933;TFCP2:0.626384089625;NKX2-1,4:0.617603061992;YY1:0.616980287083;PRDM1:0.604919142054;FOXO1,3,4:0.596741101526;ALX4:0.596561035059;MAFB:0.594470849382;MYFfamily:0.573473371716;GATA4:0.572974432047;FOX{I1,J2}:0.569134472117;HOX{A5,B5}:0.556839350804;IKZF1:0.553343692263;ZBTB6:0.552827622805;SMAD1..7,9:0.52630948375;SPZ1:0.501130357218;RREB1:0.49123824487;NHLH1,2:0.479629855129;HES1:0.470591015023;HSF1,2:0.4590617406;DBP:0.42621868747;GCM1,2:0.421402134569;MTE{core}:0.418667650414;PRRX1,2:0.405148380283;EGR1..3:0.403519885931;SP1:0.359248827192;FOX{D1,D2}:0.359058870477;XBP1:0.358258538277;MTF1:0.346444886199;HOX{A6,A7,B6,B7}:0.340977734209;TEF:0.321643300594;TBX4,5:0.298485148721;EVI1:0.297278365481;HMGA1,2:0.242991391244;LHX3,4:0.239752924708;LEF1_TCF7_TCF7L1,2:0.230136906387;MEF2{A,B,C,D}:0.223741762366;RFX2..5_RFXANK_RFXAP:0.223008185689;AR:0.206175071016;CDX1,2,4:0.200944899532;TFAP2{A,C}:0.198711786575;TBP:0.175880353314;ARID5B:0.172157290751;ESRRA:0.163737881893;NFE2L2:0.150323598525;SREBF1,2:0.121545563321;FOXN1:0.114268353041;HNF1A:0.103604831627;HMX1:0.100968645041;RFX1:0.0956038658676;HOX{A4,D4}:0.0898017193567;STAT5{A,B}:0.0809738525727;RUNX1..3:0.07828820894;TFAP2B:0.0693682241809;HNF4A_NR2F1,2:0.0688708277302;HIF1A:0.0661835212898;RXRA_VDR{dimer}:0.0502127434837;SOX17:0.0411772733817;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0332605964062;FOXP3:0.0270060201098;HIC1:0.022511311376;HLF:0.0154342612976;BREu{core}:-0.0058107524859;FOXA2:-0.00906555463974;PAX8:-0.0128631737633;NKX3-2:-0.0177802224837;NFE2:-0.0363260970057;ZFP161:-0.0384549651862;ADNP_IRX_SIX_ZHX:-0.0496064500637;NFE2L1:-0.0515218362176;POU6F1:-0.0560544872994;BACH2:-0.0589023569964;FOXQ1:-0.059007581863;TGIF1:-0.0735888761317;ZNF143:-0.0751179739198;NKX3-1:-0.0754392238664;FOX{F1,F2,J1}:-0.0914676950081;ATF2:-0.0945410041792;ONECUT1,2:-0.0985937381353;GFI1:-0.100295065619;EP300:-0.111801301038;IRF1,2:-0.117608122672;NFIL3:-0.125227533872;TP53:-0.1265344565;TOPORS:-0.141506611875;CDC5L:-0.142207449254;REST:-0.153208763279;CUX2:-0.157315304009;PAX6:-0.158130015921;ELK1,4_GABP{A,B1}:-0.167916413465;POU5F1:-0.170066593648;XCPE1{core}:-0.202759248497;CEBPA,B_DDIT3:-0.213206627369;FOSL2:-0.213556200868;IKZF2:-0.216608898171;FOS_FOS{B,L1}_JUN{B,D}:-0.229780824078;T:-0.238597484807;bHLH_family:-0.247570438593;PBX1:-0.261467635931;ATF4:-0.267350855906;CRX:-0.291527666382;NR5A1,2:-0.312283178897;IRF7:-0.329661165206;NRF1:-0.330854770849;NFKB1_REL_RELA:-0.335828679092;SOX2:-0.340019383527;RORA:-0.354261467603;CREB1:-0.358155813325;ZNF148:-0.366002322756;ATF5_CREB3:-0.381289500048;POU2F1..3:-0.393936836473;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.415983588606;FOXM1:-0.442604864234;SNAI1..3:-0.495612907441;JUN:-0.510319844874;POU3F1..4:-0.521159659447;HBP1_HMGB_SSRP1_UBTF:-0.523684564459;ETS1,2:-0.530236738235;SPI1:-0.546096488547;GATA6:-0.550699410648;TFDP1:-0.553036061934;ELF1,2,4:-0.59792877401;SPIB:-0.650794833553;PAX2:-0.672894205657;MYB:-0.675741191356;E2F1..5:-0.711350847851;FOXP1:-0.721035170954;ZBTB16:-0.754705478094;POU1F1:-0.757238124276;ZEB1:-0.769030909033;PPARG:-0.854662730769;NFY{A,B,C}:-0.943155167789;PAX3,7:-0.944887550873;SOX{8,9,10}:-0.986386566843;VSX1,2:-0.986872961502;LMO2:-1.05333782159;NANOG:-1.05988697046;TLX2:-1.08916683936;HOXA9_MEIS1:-1.08944303223;OCT4_SOX2{dimer}:-1.10739857045;ALX1:-1.13934212611;PITX1..3:-1.37172971577;MYOD1:-1.3983883299 | |top_motifs=RXR{A,B,G}:2.12980632281;ATF6:1.81646133565;ZNF238:1.72012135982;FOXL1:1.67922778419;NKX6-1,2:1.50256264308;PATZ1:1.44460740172;TAL1_TCF{3,4,12}:1.43239177531;NR3C1:1.31043779343;GZF1:1.30513826296;MYBL2:1.30037005789;SOX5:1.2709778008;ZNF423:1.26964796969;NR1H4:1.24284856898;EBF1:1.14894579499;NANOG{mouse}:1.146367387;MZF1:1.08985304621;TFAP4:1.07229972722;GFI1B:1.02501224255;KLF4:0.993960954076;MAZ:0.99130200645;NFATC1..3:0.957602693528;GTF2I:0.942194656936;GTF2A1,2:0.93494122119;TLX1..3_NFIC{dimer}:0.930793871064;GLI1..3:0.878520630007;ESR1:0.871073408776;EN1,2:0.835105188167;AIRE:0.833805091995;NR6A1:0.830716794916;PAX5:0.83049406295;TEAD1:0.797027427841;DMAP1_NCOR{1,2}_SMARC:0.796249451141;ZIC1..3:0.790247761842;ZNF384:0.775231527895;UFEwm:0.760521701758;PDX1:0.739698411192;AHR_ARNT_ARNT2:0.735689081937;STAT2,4,6:0.720871643939;NFIX:0.713382356709;STAT1,3:0.707532315656;NKX2-2,8:0.703630695215;MED-1{core}:0.7010661746;HAND1,2:0.698307284206;PAX1,9:0.674138181991;NKX2-3_NKX2-5:0.670963263256;BPTF:0.663936620323;SRF:0.652445445229;PAX4:0.646536837039;RBPJ:0.632233373921;FOXD3:0.627714829933;TFCP2:0.626384089625;NKX2-1,4:0.617603061992;YY1:0.616980287083;PRDM1:0.604919142054;FOXO1,3,4:0.596741101526;ALX4:0.596561035059;MAFB:0.594470849382;MYFfamily:0.573473371716;GATA4:0.572974432047;FOX{I1,J2}:0.569134472117;HOX{A5,B5}:0.556839350804;IKZF1:0.553343692263;ZBTB6:0.552827622805;SMAD1..7,9:0.52630948375;SPZ1:0.501130357218;RREB1:0.49123824487;NHLH1,2:0.479629855129;HES1:0.470591015023;HSF1,2:0.4590617406;DBP:0.42621868747;GCM1,2:0.421402134569;MTE{core}:0.418667650414;PRRX1,2:0.405148380283;EGR1..3:0.403519885931;SP1:0.359248827192;FOX{D1,D2}:0.359058870477;XBP1:0.358258538277;MTF1:0.346444886199;HOX{A6,A7,B6,B7}:0.340977734209;TEF:0.321643300594;TBX4,5:0.298485148721;EVI1:0.297278365481;HMGA1,2:0.242991391244;LHX3,4:0.239752924708;LEF1_TCF7_TCF7L1,2:0.230136906387;MEF2{A,B,C,D}:0.223741762366;RFX2..5_RFXANK_RFXAP:0.223008185689;AR:0.206175071016;CDX1,2,4:0.200944899532;TFAP2{A,C}:0.198711786575;TBP:0.175880353314;ARID5B:0.172157290751;ESRRA:0.163737881893;NFE2L2:0.150323598525;SREBF1,2:0.121545563321;FOXN1:0.114268353041;HNF1A:0.103604831627;HMX1:0.100968645041;RFX1:0.0956038658676;HOX{A4,D4}:0.0898017193567;STAT5{A,B}:0.0809738525727;RUNX1..3:0.07828820894;TFAP2B:0.0693682241809;HNF4A_NR2F1,2:0.0688708277302;HIF1A:0.0661835212898;RXRA_VDR{dimer}:0.0502127434837;SOX17:0.0411772733817;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0332605964062;FOXP3:0.0270060201098;HIC1:0.022511311376;HLF:0.0154342612976;BREu{core}:-0.0058107524859;FOXA2:-0.00906555463974;PAX8:-0.0128631737633;NKX3-2:-0.0177802224837;NFE2:-0.0363260970057;ZFP161:-0.0384549651862;ADNP_IRX_SIX_ZHX:-0.0496064500637;NFE2L1:-0.0515218362176;POU6F1:-0.0560544872994;BACH2:-0.0589023569964;FOXQ1:-0.059007581863;TGIF1:-0.0735888761317;ZNF143:-0.0751179739198;NKX3-1:-0.0754392238664;FOX{F1,F2,J1}:-0.0914676950081;ATF2:-0.0945410041792;ONECUT1,2:-0.0985937381353;GFI1:-0.100295065619;EP300:-0.111801301038;IRF1,2:-0.117608122672;NFIL3:-0.125227533872;TP53:-0.1265344565;TOPORS:-0.141506611875;CDC5L:-0.142207449254;REST:-0.153208763279;CUX2:-0.157315304009;PAX6:-0.158130015921;ELK1,4_GABP{A,B1}:-0.167916413465;POU5F1:-0.170066593648;XCPE1{core}:-0.202759248497;CEBPA,B_DDIT3:-0.213206627369;FOSL2:-0.213556200868;IKZF2:-0.216608898171;FOS_FOS{B,L1}_JUN{B,D}:-0.229780824078;T:-0.238597484807;bHLH_family:-0.247570438593;PBX1:-0.261467635931;ATF4:-0.267350855906;CRX:-0.291527666382;NR5A1,2:-0.312283178897;IRF7:-0.329661165206;NRF1:-0.330854770849;NFKB1_REL_RELA:-0.335828679092;SOX2:-0.340019383527;RORA:-0.354261467603;CREB1:-0.358155813325;ZNF148:-0.366002322756;ATF5_CREB3:-0.381289500048;POU2F1..3:-0.393936836473;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.415983588606;FOXM1:-0.442604864234;SNAI1..3:-0.495612907441;JUN:-0.510319844874;POU3F1..4:-0.521159659447;HBP1_HMGB_SSRP1_UBTF:-0.523684564459;ETS1,2:-0.530236738235;SPI1:-0.546096488547;GATA6:-0.550699410648;TFDP1:-0.553036061934;ELF1,2,4:-0.59792877401;SPIB:-0.650794833553;PAX2:-0.672894205657;MYB:-0.675741191356;E2F1..5:-0.711350847851;FOXP1:-0.721035170954;ZBTB16:-0.754705478094;POU1F1:-0.757238124276;ZEB1:-0.769030909033;PPARG:-0.854662730769;NFY{A,B,C}:-0.943155167789;PAX3,7:-0.944887550873;SOX{8,9,10}:-0.986386566843;VSX1,2:-0.986872961502;LMO2:-1.05333782159;NANOG:-1.05988697046;TLX2:-1.08916683936;HOXA9_MEIS1:-1.08944303223;OCT4_SOX2{dimer}:-1.10739857045;ALX1:-1.13934212611;PITX1..3:-1.37172971577;MYOD1:-1.3983883299 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11252-116F1;search_select_hide=table117:FF:11252-116F1 | |||
}} | }} | ||
Latest revision as of 16:28, 3 June 2020
| Name: | Nucleus Pulposus Cell, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10881 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10881
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10881
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.248 |
| 10 | 10 | 0.272 |
| 100 | 100 | 0.417 |
| 101 | 101 | 0.576 |
| 102 | 102 | 0.0155 |
| 103 | 103 | 0.355 |
| 104 | 104 | 0.661 |
| 105 | 105 | 0.717 |
| 106 | 106 | 0.765 |
| 107 | 107 | 0.0205 |
| 108 | 108 | 0.954 |
| 109 | 109 | 0.0474 |
| 11 | 11 | 0.32 |
| 110 | 110 | 0.454 |
| 111 | 111 | 0.143 |
| 112 | 112 | 0.217 |
| 113 | 113 | 0.103 |
| 114 | 114 | 0.414 |
| 115 | 115 | 0.634 |
| 116 | 116 | 0.295 |
| 117 | 117 | 0.151 |
| 118 | 118 | 0.545 |
| 119 | 119 | 0.138 |
| 12 | 12 | 0.114 |
| 120 | 120 | 0.236 |
| 121 | 121 | 0.161 |
| 122 | 122 | 0.0153 |
| 123 | 123 | 9.37425e-6 |
| 124 | 124 | 0.261 |
| 125 | 125 | 0.125 |
| 126 | 126 | 0.875 |
| 127 | 127 | 0.0873 |
| 128 | 128 | 0.319 |
| 129 | 129 | 0.653 |
| 13 | 13 | 0.0696 |
| 130 | 130 | 0.25 |
| 131 | 131 | 0.0577 |
| 132 | 132 | 0.0109 |
| 133 | 133 | 0.819 |
| 134 | 134 | 0.64 |
| 135 | 135 | 0.554 |
| 136 | 136 | 0.8 |
| 137 | 137 | 0.0751 |
| 138 | 138 | 0.21 |
| 139 | 139 | 0.461 |
| 14 | 14 | 0.912 |
| 140 | 140 | 0.217 |
| 141 | 141 | 0.03 |
| 142 | 142 | 0.893 |
| 143 | 143 | 0.264 |
| 144 | 144 | 0.151 |
| 145 | 145 | 0.654 |
| 146 | 146 | 0.549 |
| 147 | 147 | 0.482 |
| 148 | 148 | 0.958 |
| 149 | 149 | 0.117 |
| 15 | 15 | 0.147 |
| 150 | 150 | 0.895 |
| 151 | 151 | 0.633 |
| 152 | 152 | 0.683 |
| 153 | 153 | 0.549 |
| 154 | 154 | 0.278 |
| 155 | 155 | 0.113 |
| 156 | 156 | 0.252 |
| 157 | 157 | 0.764 |
| 158 | 158 | 0.0449 |
| 159 | 159 | 0.472 |
| 16 | 16 | 0.584 |
| 160 | 160 | 0.436 |
| 161 | 161 | 0.775 |
| 162 | 162 | 0.159 |
| 163 | 163 | 0.835 |
| 164 | 164 | 0.811 |
| 165 | 165 | 0.556 |
| 166 | 166 | 0.323 |
| 167 | 167 | 0.102 |
| 168 | 168 | 0.696 |
| 169 | 169 | 0.236 |
| 17 | 17 | 0.87 |
| 18 | 18 | 0.932 |
| 19 | 19 | 0.0998 |
| 2 | 2 | 0.174 |
| 20 | 20 | 0.822 |
| 21 | 21 | 0.752 |
| 22 | 22 | 0.217 |
| 23 | 23 | 0.818 |
| 24 | 24 | 0.85 |
| 25 | 25 | 0.235 |
| 26 | 26 | 0.345 |
| 27 | 27 | 0.551 |
| 28 | 28 | 0.383 |
| 29 | 29 | 0.617 |
| 3 | 3 | 0.913 |
| 30 | 30 | 0.104 |
| 31 | 31 | 0.436 |
| 32 | 32 | 7.96639e-6 |
| 33 | 33 | 0.947 |
| 34 | 34 | 0.666 |
| 35 | 35 | 0.769 |
| 36 | 36 | 0.0372 |
| 37 | 37 | 0.619 |
| 38 | 38 | 0.337 |
| 39 | 39 | 0.363 |
| 4 | 4 | 0.0146 |
| 40 | 40 | 0.0043 |
| 41 | 41 | 0.0165 |
| 42 | 42 | 0.757 |
| 43 | 43 | 0.497 |
| 44 | 44 | 0.836 |
| 45 | 45 | 0.232 |
| 46 | 46 | 0.988 |
| 47 | 47 | 0.0938 |
| 48 | 48 | 0.207 |
| 49 | 49 | 0.286 |
| 5 | 5 | 0.741 |
| 50 | 50 | 0.457 |
| 51 | 51 | 0.606 |
| 52 | 52 | 0.566 |
| 53 | 53 | 0.121 |
| 54 | 54 | 0.718 |
| 55 | 55 | 0.708 |
| 56 | 56 | 0.844 |
| 57 | 57 | 0.447 |
| 58 | 58 | 0.373 |
| 59 | 59 | 0.12 |
| 6 | 6 | 0.385 |
| 60 | 60 | 0.591 |
| 61 | 61 | 0.381 |
| 62 | 62 | 0.563 |
| 63 | 63 | 0.832 |
| 64 | 64 | 0.266 |
| 65 | 65 | 0.907 |
| 66 | 66 | 0.271 |
| 67 | 67 | 0.515 |
| 68 | 68 | 0.556 |
| 69 | 69 | 0.606 |
| 7 | 7 | 0.245 |
| 70 | 70 | 0.546 |
| 71 | 71 | 0.13 |
| 72 | 72 | 0.794 |
| 73 | 73 | 0.815 |
| 74 | 74 | 0.338 |
| 75 | 75 | 0.208 |
| 76 | 76 | 0.633 |
| 77 | 77 | 0.449 |
| 78 | 78 | 0.353 |
| 79 | 79 | 0.052 |
| 8 | 8 | 0.98 |
| 80 | 80 | 0.974 |
| 81 | 81 | 0.585 |
| 82 | 82 | 0.661 |
| 83 | 83 | 0.982 |
| 84 | 84 | 0.294 |
| 85 | 85 | 0.789 |
| 86 | 86 | 0.741 |
| 87 | 87 | 0.11 |
| 88 | 88 | 0.2 |
| 89 | 89 | 0.147 |
| 9 | 9 | 0.308 |
| 90 | 90 | 0.464 |
| 91 | 91 | 0.497 |
| 92 | 92 | 0.581 |
| 93 | 93 | 0.303 |
| 94 | 94 | 0.58 |
| 95 | 95 | 0.031 |
| 96 | 96 | 0.679 |
| 97 | 97 | 0.448 |
| 98 | 98 | 0.343 |
| 99 | 99 | 0.00273 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10881
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000123 human nucleus pulposus cell of intervertebral disc sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002564 (nucleus pulposus cell of intervertebral disc)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0010317 (germ layer / neural crest derived structure)
0007844 (cartilage element)
0002242 (nucleus pulposus)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000123 (human nucleus pulposus cell of intervertebral disc sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
