FF:10167-103B5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005514 | ||
|accession_numbers=CAGE;DRX008617;DRR009489;DRZ000914;DRZ002299;DRZ012264;DRZ013649 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0001876,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950,UBERON:0000349,UBERON:0010011,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010151 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.44!277.37!HOPX;;chr21:34442439..34442455,+!p1@OLIG1!2.35!222.69!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.25!176.96!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.22!165.03!PEG3;;chr15:80733570..80733659,+!p2@ARNT2!2.10!124.27!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!2.09!302.22!ZNF483;;chr2:2334997..2335053,-!p1@MYT1L!1.94!86.49!MYT1L;;chr17:53342311..53342400,+!p1@HLF!1.89!87.48!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.56!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.85!70.58!FOXG1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.80!62.63!SMARCE1;;chr22:38380543..38380569,-!p1@SOX10!1.78!58.65!SOX10;;chr5:88178983..88179012,-!p1@MEF2C!1.77!425.50!MEF2C;;chrX:85969626..85969664,+!p1@DACH2!1.75!54.68!DACH2;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.68!OLIG1;;chr4:81118647..81118666,+!p1@PRDM8!1.72!67.60!PRDM8;;chr10:48355030..48355090,+!p1@ZNF488!1.71!64.62!ZNF488;;chr2:162272785..162272836,+!p1@TBR1!1.71!50.70!TBR1;;chr17:37764128..37764258,-!p1@NEUROD2!1.71!49.71!NEUROD2;;chrX:25034067..25034088,-!p1@ARX!1.70!48.71!ARX;;chr2:95963052..95963106,+!p1@KCNIP3!1.67!45.73!KCNIP3;;chr12:106976774..106976788,+!p1@RFX4!1.64!42.75!RFX4;;chr7:31380292..31380351,-!p1@NEUROD6!1.64!42.75!NEUROD6;;chr11:61520075..61520136,+!p1@C11orf9!1.63!85.50!C11orf9;;chr2:166326200..166326216,+!p1@CSRNP3!1.62!58.65!CSRNP3;;chr15:80735246..80735321,+!p3@ARNT2!1.60!38.77!ARNT2;;chr12:106976678..106976708,+!p2@RFX4!1.59!37.78!RFX4;;chr10:119302232..119302265,+!p1@EMX2!1.58!36.78!EMX2;;chr21:34398234..34398250,+!p1@OLIG2!1.57!35.79!OLIG2;;chr19:46801639..46801699,+!p1@HIF3A!1.54!33.80!HIF3A;;chr10:64134120..64134183,+!p1@ZNF365!1.53!39.77!ZNF365;;chr19:57352109..57352153,-!p2@ZIM2!1.53!32.81!ZIM2;;chr18:53070846..53070902,-!p6@TCF4!1.53!32.81!TCF4;;chr9:126774018..126774055,+!p1@LHX2!1.53!32.81!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.53!32.81!LHX2;;chr2:95963120..95963136,+!p2@KCNIP3!1.53!32.81!KCNIP3;;chr7:63505799..63505904,+!p1@ZNF727!1.52!31.81!ZNF727;;chr2:60781201..60781258,-!p3@BCL11A!1.50!30.82!BCL11A;;chr5:88179017..88179046,-!p2@MEF2C!1.48!114.33!MEF2C;;chr11:8102846..8102892,+!p1@TUB!1.47!39.77!TUB;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.83!SOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.44!26.84!HIF3A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.43!25.85!POU3F3;;chr14:29236269..29236285,+!p3@FOXG1!1.43!25.85!FOXG1;;chr14:58798013..58798071,+!p2@ARID4A!1.43!25.85!ARID4A;;chr1:151032860..151032918,+!p1@MLLT11!1.41!283.33!MLLT11;;chr12:26277817..26277863,-!p2@BHLHE41!1.41!32.81!BHLHE41;;chr9:77112244..77112262,+!p1@RORB!1.41!27.84!RORB;;chr14:29234581..29234601,+!p2@FOXG1!1.40!23.86!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.38!22.87!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.38!22.87!ZMAT4;;chr15:80696703..80696754,+!p1@ARNT2!1.36!28.83!ARNT2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.78!ZEB2;;chr19:13135582..13135600,+!p3@NFIX!1.34!20.88!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!1.32!23.86!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.32!22.87!HOPX;;chr10:64133862..64133884,+!p4@ZNF365!1.32!19.88!ZNF365;;chr1:244214577..244214593,+!p1@ZNF238!1.32!19.88!ZNF238;;chr3:126076242..126076257,-!p1@KLF15!1.29!22.87!KLF15;;chr17:70117153..70117174,+!p1@SOX9!1.28!179.94!SOX9;;chr19:38085768..38085821,+!p1@ZNF540!1.28!26.84!ZNF540;;chr8:53322304..53322340,-!p1@ST18!1.28!17.89!ST18;;chr1:214161272..214161322,+!p1@PROX1!1.26!23.86!PROX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.25!16.90!PKNOX2;;chr16:1031762..1031781,+!p1@SOX8!1.23!15.91!SOX8;;chr9:126774058..126774081,+!p3@LHX2!1.23!15.91!LHX2;;chrX:118739782..118739829,-!p2@NKRF!1.23!15.91!NKRF;;chr3:24536253..24536328,-!p1@THRB!1.20!27.84!THRB;;chr6:19837592..19837621,+!p1@ID4!1.19!88.48!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.19!51.70!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.19!20.88!ZBTB16;;chr17:7492684..7492778,-!p2@SOX15!1.18!29.82!SOX15;;chr2:73520667..73520683,-!p1@EGR4!1.17!13.92!EGR4;;chr4:57522598..57522664,-!p3@HOPX!1.17!13.92!HOPX;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.92!PAX6;;chr12:103352277..103352324,+!p2@ASCL1!1.17!13.92!ASCL1;;chr1:151032922..151032951,+!p2@MLLT11!1.15!21.87!MLLT11;;chr19:38720294..38720348,-!p1@DPF1!1.14!15.91!DPF1;;chr14:58797974..58798011,+!p3@ARID4A!1.14!12.92!ARID4A;;chr22:41763452..41763466,+!p2@TEF!1.14!12.92!TEF;;chr9:2159850..2159880,+!p14@SMARCA2!1.14!12.92!SMARCA2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!11.93!ZSCAN1;;chr19:13135386..13135435,+!p4@NFIX!1.11!11.93!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.11!11.93!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1.11!11.93!ASCL1;;chr19:13134772..13134822,+!p2@NFIX!1.09!16.90!NFIX;;chr20:62680984..62680999,-!p1@SOX18!1.09!14.91!SOX18;;chr1:61548069..61548102,+!p3@NFIA!1.08!26.84!NFIA;;chr5:88179230..88179270,-!p4@MEF2C!1.08!21.87!MEF2C;;chr8:93107451..93107468,-!p2@RUNX1T1!1.08!10.94!RUNX1T1;;chr14:29234870..29234930,+!p7@FOXG1!1.08!10.94!FOXG1;;chr14:29237009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| |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.44!277.37!HOPX;;chr21:34442439..34442455,+!p1@OLIG1!2.35!222.69!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.25!176.96!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.22!165.03!PEG3;;chr15:80733570..80733659,+!p2@ARNT2!2.10!124.27!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!2.09!302.22!ZNF483;;chr2:2334997..2335053,-!p1@MYT1L!1.94!86.49!MYT1L;;chr17:53342311..53342400,+!p1@HLF!1.89!87.48!HLF;;chr3:181429704..181429722,+!p1@SOX2!1.88!74.56!SOX2;;chr14:29235961..29236008,+!p1@FOXG1!1.85!70.58!FOXG1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.80!62.63!SMARCE1;;chr22:38380543..38380569,-!p1@SOX10!1.78!58.65!SOX10;;chr5:88178983..88179012,-!p1@MEF2C!1.77!425.50!MEF2C;;chrX:85969626..85969664,+!p1@DACH2!1.75!54.68!DACH2;;chr21:34442540..34442560,+!p2@OLIG1!1.74!53.68!OLIG1;;chr4:81118647..81118666,+!p1@PRDM8!1.72!67.60!PRDM8;;chr10:48355030..48355090,+!p1@ZNF488!1.71!64.62!ZNF488;;chr2:162272785..162272836,+!p1@TBR1!1.71!50.70!TBR1;;chr17:37764128..37764258,-!p1@NEUROD2!1.71!49.71!NEUROD2;;chrX:25034067..25034088,-!p1@ARX!1.70!48.71!ARX;;chr2:95963052..95963106,+!p1@KCNIP3!1.67!45.73!KCNIP3;;chr12:106976774..106976788,+!p1@RFX4!1.64!42.75!RFX4;;chr7:31380292..31380351,-!p1@NEUROD6!1.64!42.75!NEUROD6;;chr11:61520075..61520136,+!p1@C11orf9!1.63!85.50!C11orf9;;chr2:166326200..166326216,+!p1@CSRNP3!1.62!58.65!CSRNP3;;chr15:80735246..80735321,+!p3@ARNT2!1.60!38.77!ARNT2;;chr12:106976678..106976708,+!p2@RFX4!1.59!37.78!RFX4;;chr10:119302232..119302265,+!p1@EMX2!1.58!36.78!EMX2;;chr21:34398234..34398250,+!p1@OLIG2!1.57!35.79!OLIG2;;chr19:46801639..46801699,+!p1@HIF3A!1.54!33.80!HIF3A;;chr10:64134120..64134183,+!p1@ZNF365!1.53!39.77!ZNF365;;chr19:57352109..57352153,-!p2@ZIM2!1.53!32.81!ZIM2;;chr18:53070846..53070902,-!p6@TCF4!1.53!32.81!TCF4;;chr9:126774018..126774055,+!p1@LHX2!1.53!32.81!LHX2;;chr9:126773880..126773895,+!p2@LHX2!1.53!32.81!LHX2;;chr2:95963120..95963136,+!p2@KCNIP3!1.53!32.81!KCNIP3;;chr7:63505799..63505904,+!p1@ZNF727!1.52!31.81!ZNF727;;chr2:60781201..60781258,-!p3@BCL11A!1.50!30.82!BCL11A;;chr5:88179017..88179046,-!p2@MEF2C!1.48!114.33!MEF2C;;chr11:8102846..8102892,+!p1@TUB!1.47!39.77!TUB;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.83!SOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.44!26.84!HIF3A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.43!25.85!POU3F3;;chr14:29236269..29236285,+!p3@FOXG1!1.43!25.85!FOXG1;;chr14:58798013..58798071,+!p2@ARID4A!1.43!25.85!ARID4A;;chr1:151032860..151032918,+!p1@MLLT11!1.41!283.33!MLLT11;;chr12:26277817..26277863,-!p2@BHLHE41!1.41!32.81!BHLHE41;;chr9:77112244..77112262,+!p1@RORB!1.41!27.84!RORB;;chr14:29234581..29234601,+!p2@FOXG1!1.40!23.86!FOXG1;;chr14:33403881..33403924,+!p1@NPAS3!1.38!22.87!NPAS3;;chr8:40755333..40755352,-!p1@ZMAT4!1.38!22.87!ZMAT4;;chr15:80696703..80696754,+!p1@ARNT2!1.36!28.83!ARNT2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.78!ZEB2;;chr19:13135582..13135600,+!p3@NFIX!1.34!20.88!NFIX;;chr3:141105705..141105770,+!p4@ZBTB38!1.32!23.86!ZBTB38;;chr4:57522166..57522260,-!p2@HOPX!1.32!22.87!HOPX;;chr10:64133862..64133884,+!p4@ZNF365!1.32!19.88!ZNF365;;chr1:244214577..244214593,+!p1@ZNF238!1.32!19.88!ZNF238;;chr3:126076242..126076257,-!p1@KLF15!1.29!22.87!KLF15;;chr17:70117153..70117174,+!p1@SOX9!1.28!179.94!SOX9;;chr19:38085768..38085821,+!p1@ZNF540!1.28!26.84!ZNF540;;chr8:53322304..53322340,-!p1@ST18!1.28!17.89!ST18;;chr1:214161272..214161322,+!p1@PROX1!1.26!23.86!PROX1;;chr11:125034640..125034655,+!p1@PKNOX2!1.25!16.90!PKNOX2;;chr16:1031762..1031781,+!p1@SOX8!1.23!15.91!SOX8;;chr9:126774058..126774081,+!p3@LHX2!1.23!15.91!LHX2;;chrX:118739782..118739829,-!p2@NKRF!1.23!15.91!NKRF;;chr3:24536253..24536328,-!p1@THRB!1.20!27.84!THRB;;chr6:19837592..19837621,+!p1@ID4!1.19!88.48!ID4;;chr12:26277956..26277980,-!p1@BHLHE41!1.19!51.70!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.19!20.88!ZBTB16;;chr17:7492684..7492778,-!p2@SOX15!1.18!29.82!SOX15;;chr2:73520667..73520683,-!p1@EGR4!1.17!13.92!EGR4;;chr4:57522598..57522664,-!p3@HOPX!1.17!13.92!HOPX;;chr11:31832658..31832681,-!p1@PAX6!1.17!13.92!PAX6;;chr12:103352277..103352324,+!p2@ASCL1!1.17!13.92!ASCL1;;chr1:151032922..151032951,+!p2@MLLT11!1.15!21.87!MLLT11;;chr19:38720294..38720348,-!p1@DPF1!1.14!15.91!DPF1;;chr14:58797974..58798011,+!p3@ARID4A!1.14!12.92!ARID4A;;chr22:41763452..41763466,+!p2@TEF!1.14!12.92!TEF;;chr9:2159850..2159880,+!p14@SMARCA2!1.14!12.92!SMARCA2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!11.93!ZSCAN1;;chr19:13135386..13135435,+!p4@NFIX!1.11!11.93!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.11!11.93!PAX6;;chr12:103351444..103351461,+!p1@ASCL1!1.11!11.93!ASCL1;;chr19:13134772..13134822,+!p2@NFIX!1.09!16.90!NFIX;;chr20:62680984..62680999,-!p1@SOX18!1.09!14.91!SOX18;;chr1:61548069..61548102,+!p3@NFIA!1.08!26.84!NFIA;;chr5:88179230..88179270,-!p4@MEF2C!1.08!21.87!MEF2C;;chr8:93107451..93107468,-!p2@RUNX1T1!1.08!10.94!RUNX1T1;;chr14:29234870..29234930,+!p7@FOXG1!1.08!10.94!FOXG1;;chr14:29237009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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%2520-%2520adult%252c%2520donor10196.CNhs13793.10167-103B5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10167-103B5 | |id=FF:10167-103B5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010151 | ||
|is_obsolete= | |||
|library_id=CNhs13793 | |||
|library_id_phase_based=2:CNhs13793 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10167 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10167 | |||
|name=amygdala - adult, donor10196 | |name=amygdala - adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.237711755554897,0.299757310563537,0,0.139439280477151,0.299757310563537,-0.27483329820609,0.581740897402362,0,0,0,0,0,0,0,0,0,0.299757310563537,0,0.299757310563537,0,-0.153323010348428,0,0,0,0.149878655281768,0,0.20179941429548,0,0,0.467192972575549,0,0,0,0,0,0,0,0,0,0,0,0,0.0039789383157558,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.77602803183779,0,0.0458144877320967,0,0.503157201111806,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299757310563537,0,0,0,-0.203236562094724,0.149878655281768,0,0,0,0,0.160860187773725,0.504873357229783,0.450430167274893,0,0.156242168040066,0.206299749141316,0.344598026855058,0,0,0,0,-0.0980353512377064,0.249536815118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.600149562354411,0,0,-0.0671953687365543,-0.345753897593005,0,0,0,0.127858293218555,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0.95197737323448,0,0.299757310563537,0,0.475423511109794,0,0.900860334549786,0,0,0,0,-0.247178875285564,0,-0.174328908188471,0.156242168040066,0.149878655281768,0,0.885589232659201,0,0,0,0.299757310563537,0,0.299757310563537,0.475423511109794,0.299757310563537,0.600149562354411,-0.128119866952565,0,0.249344758974223,0.586177712620225,0,0,0,-0.0186252810838506,0.771372902720277,0,0.485637893906562,0.407079250032426,0,0.091611014934029,0,0.299757310563537,0.418060552756786,0.273941367452201,0.354544027316053,0.392703342786377,1.57522042978443,0.147144942224752,0.13322639478506,0,0,0.300074781177205,0.412854285438188,-0.117518578843102,0,0,0.697832894941186,0.665969575853393,0,0,1.66333358485299,0,-0.204440169487071,-0.248868050382253,0,0.299757310563537,0.299757310563537,0,0,0,0,0,0,0.299757310563537,1.25286540484881,0,0,-0.0574934668214365,-0.326988596678969,0.319749947600298,0,0,0,0.318170488579333,0,0.0137349971059864,-0.0735288453930294,-0.269631976484861,0,-0.448771669537006,0.0513684980915496,1.27491203278791,0.0407367273650618,0.0549136201024943,0.517419841429607,0.80457552386334,0.10977559101369,0,0.504873357229783,0.165704744120468,0.232472746011931,-0.459189073532689,0.0825507754059714,-0.154563374668421,0.21377770694784,0,0,0.0538474389887116,0.0777702180556645,0.0716494846902463,0.212853938087663,-0.190357403913236,0.844982915856147,0.91022036718855,0.374077732297047,0.369118490416249,-0.232373298363931,1.3242288518923,0.654154406205258,0.128654607427343,-0.073106367838372,0.0256602610453787,0.475423511109794,0.209653138601544,0.441739776844269,-0.00988407526953172,-0.615826173178679,0,-0.00855395070118664,-0.0683442610773682,1.05281954505031,0.302266472318527,-0.0371202952700571,0,0.042991071114708,-0.279019920307875,0,0,0,0.367576524805569,0.696931914130656,-0.239831039495616,0.800497620905667,0.0669017490079926,0.37734606771716,0.800832394636423,-0.0052268511755117,-0.0595743247976895,0.165271986626524,0.108032699836353,0.3294136136524,0.368191632021845,0.300664079045421,0.113877536219096,0.0283990433208928,0.301044605749335,-0.164990696339003,0.689196053710115,1.9433507484431,0.0455560980620595,-0.708380651750326,-0.394011584532936,-0.489182554226689,0.259297588767682,0.512022729879123,0.254774691561246,0.41506394593349,0.0174337825091317,0,0.589216161651408,0,-0.0673580766980251,1.07684513361868,-0.229600732654382,0.0217581978869979,-0.27981656831246,0.457272723224208,0.160860187773725,-0.0591584821275439,0.00456105570683807,0.194486252939651,1.5595793831067,0,0.164034166716755,0.0336981331569683,0,0.149390227228898,0.379149167106101,0.026061327690308,0.248600954157471,0.229968563442174,0.654620060003356,1.76092296002242,1.56572170531706,0.757536613780764,0.239947473345405,0,-0.00333274547524143,-0.309445603649859,-0.304458730631757,0.35945243767486,0.299757310563537,0,0.0512315761379314,0.299757310563537,0,0.0910038503126258,0.544565184125407,0.8091260082817,-0.253326341486756,0.335944572983147,0.27939120646464,0,0.600149562354411,-0.177527765965176,1.82999739750736,0.297990646094047,0,0,0.0498760139647138,0,0,0.388014015918895,2.20429264455953,0.0424460649971327,0,0,0,0,0,0,0.0869270953250886,0.164078660479214,0.245316232137963,0.299757310563537,0.0495062765141787,0,0,0.600149562354411,0,0,0.0400264773812207,0.0611196188114715,0,-0.816302806981886,0,-0.12301741567642,0,0.299757310563537,0,0,0.259700108556319,-0.203236562094724,0.475423511109794,-0.131862706497632,0,0,0,0.475423511109794,-0.0861409897892114,0,0,0,0,0.242026853509873,0.190616649715186,0,0,0,0.499073630236,0.475423511109794,0.245619177488656,0,0,-0.297977582833645,0,0,0.320047199848099,0,0.263433201059854,0.761332125746252,0,-0.222479273489065,-1.60264998778679,-0.311913865951014,0.299757310563537,0,0.0384101787736499,0,0,-1.03594432163325,0.0444969698764857,0,0.149878655281768,0,0,0,0,0.112227724220784,0,0.0854427981637818,0,0,0,0,0,0.95197737323448,0,0,0,0,0.299757310563537,0.195553435880652,0.383199454451284,0,0,0.23032667268461,0,0,0.149878655281768,0,-0.0241060230789031,0.193316490149218,0,0,0,0,0,0,0.127858293218555,0,0.480551433571237,0,0,0,0,0,0.503157201111806,0,0,0,0,0.68805828369493,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,-0.225974310246313,0,0,0,0,0.475423511109794,0.299757310563537,0,-0.27483329820609,0,0.475423511109794,0,0,1.38879638048928,0,0,0,-0.104796384789156,0,0.139439280477151,0.299757310563537,0,0.77602803183779,0,0,0,0,0,0,0,0.299757310563537,0,0,0,0,0,0,0,0.450430167274893,0,0,-0.960657350049449,0.51301095795188,0.312942046381501,0.0432267331261729,0,0,0.155385663285853,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600149562354411,0,0,0,0,0,0.300074781177205,-0.0348580438050884,0,0,0,0,0,0,0,0.20179941429548,0,0,0.29555760103614,0,0,0,0,0,0,0.012097940520496,0.104370011013518,0.0716543993771526,0,0,0.299757310563537,0.484036994326885,0.77602803183779,0.0345203385403035,0,0,-0.0667773874189013,0,0,0,0,0,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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=55.65525 | |rna_weight_ug=55.65525 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.80551744719731e-298!GO:0005737;cytoplasm;3.43820135773968e-149!GO:0044444;cytoplasmic part;8.32075868525982e-103!GO:0043226;organelle;1.17265097265188e-90!GO:0043229;intracellular organelle;4.17186180969821e-90!GO:0043227;membrane-bound organelle;5.26444791344736e-85!GO:0043231;intracellular membrane-bound organelle;1.05615291381385e-84!GO:0032991;macromolecular complex;1.42316631115888e-65!GO:0044422;organelle part;1.53387459263279e-64!GO:0044446;intracellular organelle part;1.50324938035022e-63!GO:0005515;protein binding;7.07875819494956e-63!GO:0030529;ribonucleoprotein complex;4.22658970573102e-46!GO:0016043;cellular component organization and biogenesis;2.88510601659698e-44!GO:0005739;mitochondrion;6.61912665121216e-44!GO:0003723;RNA binding;2.7229874947281e-41!GO:0033036;macromolecule localization;3.40510906905151e-38!GO:0015031;protein transport;1.40831931918303e-37!GO:0031090;organelle membrane;3.34477808849246e-36!GO:0043234;protein complex;4.52778415674947e-36!GO:0008104;protein localization;9.85825518434579e-35!GO:0045184;establishment of protein localization;1.61559804830007e-34!GO:0044429;mitochondrial part;1.57043524346448e-33!GO:0043233;organelle lumen;6.64846243646526e-31!GO:0031974;membrane-enclosed lumen;6.64846243646526e-31!GO:0046907;intracellular transport;1.79225787787885e-30!GO:0051649;establishment of cellular localization;3.00655059791284e-28!GO:0051641;cellular localization;5.97427040055034e-28!GO:0005840;ribosome;6.03806531367877e-28!GO:0044428;nuclear part;8.72070066623971e-28!GO:0031975;envelope;2.74659581138806e-26!GO:0031967;organelle envelope;2.89188863141055e-26!GO:0005829;cytosol;5.68062686674893e-26!GO:0019538;protein metabolic process;5.99289812803855e-26!GO:0016192;vesicle-mediated transport;1.51553861716753e-25!GO:0016071;mRNA metabolic process;2.68230886758175e-24!GO:0003735;structural constituent of ribosome;3.65986703116585e-24!GO:0006396;RNA processing;4.10463958179516e-24!GO:0044260;cellular macromolecule metabolic process;2.46427424979849e-23!GO:0006119;oxidative phosphorylation;4.21380506048088e-23!GO:0044237;cellular metabolic process;5.01894545981717e-23!GO:0044238;primary metabolic process;5.01894545981717e-23!GO:0006412;translation;7.62307325683581e-23!GO:0006886;intracellular protein transport;1.25227354446384e-22!GO:0044267;cellular protein metabolic process;1.88795617584347e-22!GO:0005740;mitochondrial envelope;2.94720668932351e-22!GO:0008380;RNA splicing;4.01807365815548e-22!GO:0043170;macromolecule metabolic process;9.61906358152356e-22!GO:0031966;mitochondrial membrane;1.17277810565368e-21!GO:0033279;ribosomal subunit;1.36654680986633e-20!GO:0006397;mRNA processing;1.54839660441304e-20!GO:0019866;organelle inner membrane;4.44516598433129e-19!GO:0044455;mitochondrial membrane part;6.75774225994767e-19!GO:0005743;mitochondrial inner membrane;6.75774225994767e-19!GO:0031982;vesicle;4.68208875648242e-18!GO:0005794;Golgi apparatus;1.87725679638661e-17!GO:0009058;biosynthetic process;3.29412374953292e-17!GO:0031410;cytoplasmic vesicle;3.72171441767746e-17!GO:0006996;organelle organization and biogenesis;3.92611348122861e-17!GO:0005634;nucleus;5.51180296474513e-17!GO:0031981;nuclear lumen;9.60798680748655e-17!GO:0031988;membrane-bound vesicle;1.39442643264715e-16!GO:0065003;macromolecular complex assembly;2.15894667230247e-16!GO:0000166;nucleotide binding;4.81180716506142e-16!GO:0044249;cellular biosynthetic process;4.81180716506142e-16!GO:0005746;mitochondrial respiratory chain;8.00627561269988e-16!GO:0009059;macromolecule biosynthetic process;9.50865341113868e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.80643408412499e-16!GO:0016023;cytoplasmic membrane-bound vesicle;1.02342805090429e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.1003012954751e-15!GO:0016462;pyrophosphatase activity;1.13307765516215e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.55569234951645e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.77401270014205e-15!GO:0003954;NADH dehydrogenase activity;3.77401270014205e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.77401270014205e-15!GO:0017111;nucleoside-triphosphatase activity;1.26097046546608e-14!GO:0005681;spliceosome;1.28056210619707e-14!GO:0022607;cellular component assembly;2.50602168434401e-14!GO:0006457;protein folding;2.55411384039424e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.46022372677011e-14!GO:0044445;cytosolic part;3.77310983946325e-14!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.81239587779688e-14!GO:0031980;mitochondrial lumen;1.5817459747912e-13!GO:0005759;mitochondrial matrix;1.5817459747912e-13!GO:0006512;ubiquitin cycle;2.91246581316507e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.91246581316507e-13!GO:0045271;respiratory chain complex I;2.91246581316507e-13!GO:0005747;mitochondrial respiratory chain complex I;2.91246581316507e-13!GO:0012505;endomembrane system;3.29819018642895e-13!GO:0045045;secretory pathway;3.33657669755317e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.35642591612752e-13!GO:0042773;ATP synthesis coupled electron transport;4.35642591612752e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.27169366901995e-13!GO:0048770;pigment granule;2.62500581936058e-12!GO:0042470;melanosome;2.62500581936058e-12!GO:0032553;ribonucleotide binding;7.55397908250834e-12!GO:0032555;purine ribonucleotide binding;7.55397908250834e-12!GO:0016874;ligase activity;1.31661056475679e-11!GO:0019829;cation-transporting ATPase activity;1.96781551095015e-11!GO:0048193;Golgi vesicle transport;2.36167458666241e-11!GO:0051082;unfolded protein binding;3.3209560727403e-11!GO:0017076;purine nucleotide binding;3.3209560727403e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.44626935933736e-11!GO:0043687;post-translational protein modification;3.91787681952668e-11!GO:0043412;biopolymer modification;6.76521542218226e-11!GO:0022618;protein-RNA complex assembly;6.98264680979301e-11!GO:0003924;GTPase activity;7.67555020410731e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.89257636380584e-11!GO:0015935;small ribosomal subunit;9.55627784486033e-11!GO:0007264;small GTPase mediated signal transduction;9.68034918087682e-11!GO:0015934;large ribosomal subunit;1.02572681156416e-10!GO:0043283;biopolymer metabolic process;1.41427672177718e-10!GO:0008135;translation factor activity, nucleic acid binding;1.60810121743414e-10!GO:0006464;protein modification process;1.82818796817724e-10!GO:0030135;coated vesicle;1.99180679151247e-10!GO:0006605;protein targeting;2.35929927833684e-10!GO:0006810;transport;4.64982200671393e-10!GO:0005654;nucleoplasm;5.57024042810479e-10!GO:0043228;non-membrane-bound organelle;6.07000554619945e-10!GO:0043232;intracellular non-membrane-bound organelle;6.07000554619945e-10!GO:0000502;proteasome complex (sensu Eukaryota);7.88755941409231e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.01860896774359e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;1.02208271540751e-09!GO:0008565;protein transporter activity;1.27836549807206e-09!GO:0006511;ubiquitin-dependent protein catabolic process;1.57854843435774e-09!GO:0006793;phosphorus metabolic process;1.67228724021922e-09!GO:0006796;phosphate metabolic process;1.67228724021922e-09!GO:0044265;cellular macromolecule catabolic process;1.71852643238136e-09!GO:0019941;modification-dependent protein catabolic process;1.71852643238136e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.71852643238136e-09!GO:0044257;cellular protein catabolic process;2.09537744553443e-09!GO:0015986;ATP synthesis coupled proton transport;3.61361160343291e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.61361160343291e-09!GO:0032940;secretion by cell;5.15687387887707e-09!GO:0051186;cofactor metabolic process;5.49724585465196e-09!GO:0005525;GTP binding;6.48809077144442e-09!GO:0005768;endosome;7.09466571342634e-09!GO:0044451;nucleoplasm part;7.55844513066804e-09!GO:0005761;mitochondrial ribosome;7.69503384236289e-09!GO:0000313;organellar ribosome;7.69503384236289e-09!GO:0044431;Golgi apparatus part;1.00326480925138e-08!GO:0010467;gene expression;1.36515617188206e-08!GO:0043285;biopolymer catabolic process;1.5210087609443e-08!GO:0051179;localization;2.01683471651568e-08!GO:0007399;nervous system development;2.01881018326355e-08!GO:0030695;GTPase regulator activity;2.3690510139798e-08!GO:0008639;small protein conjugating enzyme activity;2.79879778638554e-08!GO:0043005;neuron projection;2.87116041572997e-08!GO:0016044;membrane organization and biogenesis;3.79456560706227e-08!GO:0004842;ubiquitin-protein ligase activity;3.86931761852933e-08!GO:0044248;cellular catabolic process;5.63986426390302e-08!GO:0003743;translation initiation factor activity;5.92571472894036e-08!GO:0016469;proton-transporting two-sector ATPase complex;6.09417750041453e-08!GO:0030163;protein catabolic process;6.1190541479051e-08!GO:0051234;establishment of localization;6.1190541479051e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.09936907083992e-08!GO:0019787;small conjugating protein ligase activity;7.74573434399826e-08!GO:0005783;endoplasmic reticulum;9.19722319148919e-08!GO:0009057;macromolecule catabolic process;1.20109778421758e-07!GO:0006754;ATP biosynthetic process;1.33074970642586e-07!GO:0006753;nucleoside phosphate metabolic process;1.33074970642586e-07!GO:0006446;regulation of translational initiation;1.39196163903203e-07!GO:0046034;ATP metabolic process;1.40690286118604e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.45731105142327e-07!GO:0000375;RNA splicing, via transesterification reactions;1.45731105142327e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.45731105142327e-07!GO:0008134;transcription factor binding;1.6513138559083e-07!GO:0009055;electron carrier activity;1.75147859286676e-07!GO:0032561;guanyl ribonucleotide binding;1.83189723179684e-07!GO:0019001;guanyl nucleotide binding;1.83189723179684e-07!GO:0006413;translational initiation;2.10973496856187e-07!GO:0005083;small GTPase regulator activity;2.32289100891167e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.43056029973247e-07!GO:0009141;nucleoside triphosphate metabolic process;2.64294753655325e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.7514853071344e-07!GO:0008092;cytoskeletal protein binding;2.88975511184246e-07!GO:0005730;nucleolus;2.93288359968823e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.07932012091434e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.07932012091434e-07!GO:0009060;aerobic respiration;3.59213686376632e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.59213686376632e-07!GO:0019717;synaptosome;3.88895921021043e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.24581578083417e-07!GO:0006164;purine nucleotide biosynthetic process;4.28583853967511e-07!GO:0006461;protein complex assembly;4.5276096657359e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.701349328321e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.701349328321e-07!GO:0006163;purine nucleotide metabolic process;4.7031297875952e-07!GO:0045333;cellular respiration;4.97093402466782e-07!GO:0009152;purine ribonucleotide biosynthetic process;5.19766917268889e-07!GO:0030136;clathrin-coated vesicle;5.19766917268889e-07!GO:0016310;phosphorylation;5.5548844523323e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.57684108112083e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.57684108112083e-07!GO:0016604;nuclear body;5.83639280858491e-07!GO:0009150;purine ribonucleotide metabolic process;6.1741259247218e-07!GO:0016607;nuclear speck;9.98589630327402e-07!GO:0000139;Golgi membrane;9.98589630327402e-07!GO:0032559;adenyl ribonucleotide binding;1.5194672247392e-06!GO:0006732;coenzyme metabolic process;1.58279419820467e-06!GO:0009259;ribonucleotide metabolic process;1.74309591618491e-06!GO:0007010;cytoskeleton organization and biogenesis;1.81086078787025e-06!GO:0048475;coated membrane;1.81086078787025e-06!GO:0030117;membrane coat;1.81086078787025e-06!GO:0016881;acid-amino acid ligase activity;1.83176873648623e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.90575190995224e-06!GO:0048471;perinuclear region of cytoplasm;2.17796749306951e-06!GO:0009260;ribonucleotide biosynthetic process;2.79198315592348e-06!GO:0045259;proton-transporting ATP synthase complex;3.81384940255455e-06!GO:0006913;nucleocytoplasmic transport;3.99861792254084e-06!GO:0005524;ATP binding;4.16286482911129e-06!GO:0030554;adenyl nucleotide binding;5.21215098400984e-06!GO:0015631;tubulin binding;5.46009603597556e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.46009603597556e-06!GO:0051169;nuclear transport;5.78114438274427e-06!GO:0031965;nuclear membrane;5.78363228980567e-06!GO:0008287;protein serine/threonine phosphatase complex;5.78363228980567e-06!GO:0030036;actin cytoskeleton organization and biogenesis;6.61996084814192e-06!GO:0044440;endosomal part;7.17726700211661e-06!GO:0010008;endosome membrane;7.17726700211661e-06!GO:0032446;protein modification by small protein conjugation;9.68957047972633e-06!GO:0006099;tricarboxylic acid cycle;1.27466902894837e-05!GO:0046356;acetyl-CoA catabolic process;1.27466902894837e-05!GO:0007242;intracellular signaling cascade;1.42922552742958e-05!GO:0030425;dendrite;1.56291338201093e-05!GO:0016567;protein ubiquitination;1.67191540772157e-05!GO:0016887;ATPase activity;1.84401743060115e-05!GO:0005635;nuclear envelope;1.84755959034044e-05!GO:0048523;negative regulation of cellular process;2.02162899557359e-05!GO:0009109;coenzyme catabolic process;2.26309733051305e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.32062586487213e-05!GO:0015399;primary active transmembrane transporter activity;2.32062586487213e-05!GO:0019226;transmission of nerve impulse;2.89792498570821e-05!GO:0030120;vesicle coat;3.12634403948401e-05!GO:0030662;coated vesicle membrane;3.12634403948401e-05!GO:0042623;ATPase activity, coupled;3.22641438470227e-05!GO:0051187;cofactor catabolic process;3.64322690309508e-05!GO:0015630;microtubule cytoskeleton;4.10647220460593e-05!GO:0019899;enzyme binding;4.59392194788915e-05!GO:0051246;regulation of protein metabolic process;4.71412403945447e-05!GO:0005798;Golgi-associated vesicle;4.72855899498798e-05!GO:0022890;inorganic cation transmembrane transporter activity;5.88201368131571e-05!GO:0006084;acetyl-CoA metabolic process;6.20610078723331e-05!GO:0006897;endocytosis;6.37295730226072e-05!GO:0010324;membrane invagination;6.37295730226072e-05!GO:0005905;coated pit;6.37693590592428e-05!GO:0031252;leading edge;7.47658551068583e-05!GO:0005770;late endosome;7.47658551068583e-05!GO:0030029;actin filament-based process;7.88331730887918e-05!GO:0017038;protein import;8.21624757095143e-05!GO:0008047;enzyme activator activity;8.79646986405737e-05!GO:0005769;early endosome;9.46882483651334e-05!GO:0045055;regulated secretory pathway;0.000110236064944772!GO:0009056;catabolic process;0.000115478092935049!GO:0007269;neurotransmitter secretion;0.000117428637115177!GO:0006752;group transfer coenzyme metabolic process;0.000129923363081492!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000152285542270356!GO:0043492;ATPase activity, coupled to movement of substances;0.00017349738433849!GO:0006403;RNA localization;0.000175798561761046!GO:0048489;synaptic vesicle transport;0.000178208006089666!GO:0044432;endoplasmic reticulum part;0.000178386545232435!GO:0006888;ER to Golgi vesicle-mediated transport;0.000178386545232435!GO:0050657;nucleic acid transport;0.000181320623554292!GO:0051236;establishment of RNA localization;0.000181320623554292!GO:0050658;RNA transport;0.000181320623554292!GO:0031072;heat shock protein binding;0.000206428897001652!GO:0000902;cell morphogenesis;0.000207186284105646!GO:0032989;cellular structure morphogenesis;0.000207186284105646!GO:0007265;Ras protein signal transduction;0.000210791264450616!GO:0000245;spliceosome assembly;0.000229790189727473!GO:0005643;nuclear pore;0.000232301144392792!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000233901267593097!GO:0051188;cofactor biosynthetic process;0.000239086226622019!GO:0030133;transport vesicle;0.000239086226622019!GO:0008021;synaptic vesicle;0.000260398712118644!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000280168161675349!GO:0006613;cotranslational protein targeting to membrane;0.000306659094989073!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000333042744302811!GO:0005874;microtubule;0.000334710278054603!GO:0000159;protein phosphatase type 2A complex;0.000350151741561077!GO:0008654;phospholipid biosynthetic process;0.000350167364184835!GO:0003712;transcription cofactor activity;0.000403710347626434!GO:0048519;negative regulation of biological process;0.000411199477491262!GO:0008601;protein phosphatase type 2A regulator activity;0.000446640574953089!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00046953366863134!GO:0007268;synaptic transmission;0.000477095399618052!GO:0005096;GTPase activator activity;0.00050317757683773!GO:0051128;regulation of cellular component organization and biogenesis;0.000504672836804081!GO:0008017;microtubule binding;0.000507976696283426!GO:0044453;nuclear membrane part;0.000516437842187277!GO:0042254;ribosome biogenesis and assembly;0.000536487346956662!GO:0045786;negative regulation of progression through cell cycle;0.000545300670104687!GO:0019208;phosphatase regulator activity;0.000554224397425213!GO:0015980;energy derivation by oxidation of organic compounds;0.000639124094182179!GO:0030027;lamellipodium;0.000639124094182179!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000660064704521161!GO:0051056;regulation of small GTPase mediated signal transduction;0.000713398588110754!GO:0030118;clathrin coat;0.000739728318339683!GO:0005789;endoplasmic reticulum membrane;0.000801848083291215!GO:0003729;mRNA binding;0.000834846185195128!GO:0005741;mitochondrial outer membrane;0.000862279668035981!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000884339480709206!GO:0000151;ubiquitin ligase complex;0.000884339480709206!GO:0004721;phosphoprotein phosphatase activity;0.000924987308373138!GO:0016050;vesicle organization and biogenesis;0.00101599747885862!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00107402227979699!GO:0003779;actin binding;0.00107616035783284!GO:0001505;regulation of neurotransmitter levels;0.00111634352704808!GO:0005773;vacuole;0.00111935410042853!GO:0043566;structure-specific DNA binding;0.00112389955465597!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00113330898669687!GO:0006650;glycerophospholipid metabolic process;0.00114797013291594!GO:0016311;dephosphorylation;0.00114797013291594!GO:0005793;ER-Golgi intermediate compartment;0.00114797013291594!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00116000260200089!GO:0030427;site of polarized growth;0.00131560783683075!GO:0022406;membrane docking;0.00133619289281693!GO:0048278;vesicle docking;0.00133619289281693!GO:0009108;coenzyme biosynthetic process;0.00135541892038079!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0013805175350019!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0013805175350019!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0013805175350019!GO:0000314;organellar small ribosomal subunit;0.00138406978742818!GO:0005763;mitochondrial small ribosomal subunit;0.00138406978742818!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00139835143503844!GO:0006414;translational elongation;0.00141959157377299!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00164745411319846!GO:0019888;protein phosphatase regulator activity;0.00164745411319846!GO:0030532;small nuclear ribonucleoprotein complex;0.00168039683206197!GO:0016564;transcription repressor activity;0.00169007714424326!GO:0046467;membrane lipid biosynthetic process;0.00185966947937701!GO:0003724;RNA helicase activity;0.00191455612273052!GO:0030426;growth cone;0.00192421657988097!GO:0006904;vesicle docking during exocytosis;0.00192421657988097!GO:0051028;mRNA transport;0.0019255903510931!GO:0043623;cellular protein complex assembly;0.00196836560989106!GO:0005516;calmodulin binding;0.00205305395271555!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00206398788499678!GO:0016301;kinase activity;0.00208829088050196!GO:0006470;protein amino acid dephosphorylation;0.00224691929627481!GO:0016791;phosphoric monoester hydrolase activity;0.00224691929627481!GO:0008154;actin polymerization and/or depolymerization;0.00234333907959304!GO:0016197;endosome transport;0.00237527217740929!GO:0065002;intracellular protein transport across a membrane;0.00237806023450408!GO:0031968;organelle outer membrane;0.00238745620225473!GO:0006607;NLS-bearing substrate import into nucleus;0.00248640127477713!GO:0003697;single-stranded DNA binding;0.00248640127477713!GO:0005839;proteasome core complex (sensu Eukaryota);0.00248640127477713!GO:0030384;phosphoinositide metabolic process;0.00266058921754641!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00273162852827107!GO:0005048;signal sequence binding;0.00283837866417308!GO:0005085;guanyl-nucleotide exchange factor activity;0.00289542709214692!GO:0003714;transcription corepressor activity;0.00294996851403182!GO:0006323;DNA packaging;0.00298002994619035!GO:0048167;regulation of synaptic plasticity;0.00303277119853284!GO:0004386;helicase activity;0.00312466376971132!GO:0005762;mitochondrial large ribosomal subunit;0.00328630697109725!GO:0000315;organellar large ribosomal subunit;0.00328630697109725!GO:0048487;beta-tubulin binding;0.00331023830324676!GO:0033673;negative regulation of kinase activity;0.00331040199870167!GO:0006469;negative regulation of protein kinase activity;0.00331040199870167!GO:0051087;chaperone binding;0.00331040199870167!GO:0051170;nuclear import;0.00364538664394909!GO:0019887;protein kinase regulator activity;0.00389262654014836!GO:0012506;vesicle membrane;0.00393969160629597!GO:0030041;actin filament polymerization;0.00393969160629597!GO:0008219;cell death;0.00393969160629597!GO:0016265;death;0.00393969160629597!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00404045728795311!GO:0019198;transmembrane receptor protein phosphatase activity;0.00404045728795311!GO:0019867;outer membrane;0.0040411992988112!GO:0006891;intra-Golgi vesicle-mediated transport;0.0040495166888021!GO:0006612;protein targeting to membrane;0.00405540692828794!GO:0006606;protein import into nucleus;0.00406655014676088!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00419493727619929!GO:0004667;prostaglandin-D synthase activity;0.00419493727619929!GO:0050802;circadian sleep/wake cycle, sleep;0.00419493727619929!GO:0022410;circadian sleep/wake cycle process;0.00419493727619929!GO:0042749;regulation of circadian sleep/wake cycle;0.00419493727619929!GO:0004722;protein serine/threonine phosphatase activity;0.00424017205684383!GO:0008026;ATP-dependent helicase activity;0.00436929900046621!GO:0051168;nuclear export;0.0044305302042387!GO:0006892;post-Golgi vesicle-mediated transport;0.00461014636029764!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00492935563222078!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00492935563222078!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00502910266482908!GO:0004812;aminoacyl-tRNA ligase activity;0.00502910266482908!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00502910266482908!GO:0004674;protein serine/threonine kinase activity;0.00504076679995016!GO:0051540;metal cluster binding;0.00510498199271938!GO:0051536;iron-sulfur cluster binding;0.00510498199271938!GO:0019902;phosphatase binding;0.00545981594468802!GO:0006259;DNA metabolic process;0.00548588914766958!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00557043308618831!GO:0006091;generation of precursor metabolites and energy;0.00557043308618831!GO:0007019;microtubule depolymerization;0.00572026434044629!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00582855295078422!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00589849928402982!GO:0055083;monovalent inorganic anion homeostasis;0.00589849928402982!GO:0055064;chloride ion homeostasis;0.00589849928402982!GO:0030644;cellular chloride ion homeostasis;0.00589849928402982!GO:0050803;regulation of synapse structure and activity;0.00624997223574678!GO:0043021;ribonucleoprotein binding;0.00626851352587459!GO:0009966;regulation of signal transduction;0.00627714024403699!GO:0005875;microtubule associated complex;0.00641924257594267!GO:0009117;nucleotide metabolic process;0.00664842060154188!GO:0008139;nuclear localization sequence binding;0.00677187290378437!GO:0007611;learning and/or memory;0.00690082530917057!GO:0043069;negative regulation of programmed cell death;0.00690082530917057!GO:0031901;early endosome membrane;0.00691068582560025!GO:0007005;mitochondrion organization and biogenesis;0.00691068582560025!GO:0043038;amino acid activation;0.00693256894066238!GO:0006418;tRNA aminoacylation for protein translation;0.00693256894066238!GO:0043039;tRNA aminoacylation;0.00693256894066238!GO:0046930;pore complex;0.00716715359129614!GO:0031124;mRNA 3'-end processing;0.00738702301132543!GO:0004298;threonine endopeptidase activity;0.0074024582227822!GO:0048500;signal recognition particle;0.00740497622495961!GO:0016568;chromatin modification;0.00748420641353972!GO:0051348;negative regulation of transferase activity;0.00757528996744812!GO:0043066;negative regulation of apoptosis;0.00777619046531657!GO:0044456;synapse part;0.00814840056688422!GO:0030137;COPI-coated vesicle;0.0083268195466476!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00839184222336882!GO:0008180;signalosome;0.00841226754986994!GO:0051920;peroxiredoxin activity;0.00843636511984517!GO:0012501;programmed cell death;0.00917438657355215!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00925040057557602!GO:0031902;late endosome membrane;0.00925040057557602!GO:0005885;Arp2/3 protein complex;0.00925124486109394!GO:0030867;rough endoplasmic reticulum membrane;0.00925124486109394!GO:0030030;cell projection organization and biogenesis;0.00927362702153326!GO:0048858;cell projection morphogenesis;0.00927362702153326!GO:0032990;cell part morphogenesis;0.00927362702153326!GO:0050767;regulation of neurogenesis;0.00932938961510462!GO:0005869;dynactin complex;0.00960310723450805!GO:0043086;negative regulation of catalytic activity;0.00963286069713095!GO:0030742;GTP-dependent protein binding;0.00967690003193289!GO:0006818;hydrogen transport;0.0100155096787025!GO:0000323;lytic vacuole;0.0100638904079621!GO:0005764;lysosome;0.0100638904079621!GO:0006915;apoptosis;0.0102843351253542!GO:0030660;Golgi-associated vesicle membrane;0.0102843351253542!GO:0019207;kinase regulator activity;0.0105124216254397!GO:0046474;glycerophospholipid biosynthetic process;0.0106007884865249!GO:0022008;neurogenesis;0.0107383167861712!GO:0016859;cis-trans isomerase activity;0.0107707779517496!GO:0048699;generation of neurons;0.0111078164497023!GO:0030658;transport vesicle membrane;0.0112714576558997!GO:0001578;microtubule bundle formation;0.011641452640705!GO:0050839;cell adhesion molecule binding;0.0116572684275754!GO:0051726;regulation of cell cycle;0.011694656917587!GO:0046578;regulation of Ras protein signal transduction;0.011883080453045!GO:0043681;protein import into mitochondrion;0.0121414061022234!GO:0006916;anti-apoptosis;0.012277097508122!GO:0008186;RNA-dependent ATPase activity;0.0123690730778932!GO:0005938;cell cortex;0.0124193839626001!GO:0006402;mRNA catabolic process;0.0124594070714974!GO:0030424;axon;0.0125329908048038!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0125485866981638!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.012670656859284!GO:0006366;transcription from RNA polymerase II promoter;0.0128583391238312!GO:0015992;proton transport;0.0130160849601283!GO:0044433;cytoplasmic vesicle part;0.0134001244119109!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.013632150377604!GO:0045047;protein targeting to ER;0.013632150377604!GO:0048468;cell development;0.0136830535855004!GO:0046870;cadmium ion binding;0.0138372533710258!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.014084336322188!GO:0050811;GABA receptor binding;0.0142026976420068!GO:0005791;rough endoplasmic reticulum;0.0144604043882167!GO:0004683;calmodulin-dependent protein kinase activity;0.0148429600586452!GO:0030258;lipid modification;0.0148429600586452!GO:0030182;neuron differentiation;0.0149005172429253!GO:0046488;phosphatidylinositol metabolic process;0.0152772914358095!GO:0016126;sterol biosynthetic process;0.0152772914358095!GO:0005813;centrosome;0.0154809335705428!GO:0007266;Rho protein signal transduction;0.0155662350540712!GO:0006333;chromatin assembly or disassembly;0.0155662350540712!GO:0000209;protein polyubiquitination;0.0157667655811289!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0158097136133286!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0158908798503936!GO:0006364;rRNA processing;0.0159986182252575!GO:0000074;regulation of progression through cell cycle;0.0159986182252575!GO:0019904;protein domain specific binding;0.0160782495800359!GO:0030054;cell junction;0.0161807698594828!GO:0031114;regulation of microtubule depolymerization;0.0165297334660823!GO:0007026;negative regulation of microtubule depolymerization;0.0165297334660823!GO:0003746;translation elongation factor activity;0.0166627150273328!GO:0007017;microtubule-based process;0.0167516402058202!GO:0035035;histone acetyltransferase binding;0.0180330640495652!GO:0031123;RNA 3'-end processing;0.0184670583803891!GO:0006643;membrane lipid metabolic process;0.0185132604381704!GO:0030132;clathrin coat of coated pit;0.0188180347745401!GO:0008361;regulation of cell size;0.0193987962108178!GO:0008312;7S RNA binding;0.0196200988945406!GO:0043209;myelin sheath;0.0202538309374687!GO:0006887;exocytosis;0.0202538309374687!GO:0005868;cytoplasmic dynein complex;0.0203130104022276!GO:0016740;transferase activity;0.0203268298960242!GO:0031371;ubiquitin conjugating enzyme complex;0.0206590911442385!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0216365258579408!GO:0009165;nucleotide biosynthetic process;0.021802097354346!GO:0016072;rRNA metabolic process;0.0220937774485434!GO:0007034;vacuolar transport;0.022359575637269!GO:0016363;nuclear matrix;0.0229080765733704!GO:0007049;cell cycle;0.0230433646027768!GO:0005774;vacuolar membrane;0.0231114222733426!GO:0051261;protein depolymerization;0.0244304806850886!GO:0044448;cell cortex part;0.0252773320476012!GO:0043284;biopolymer biosynthetic process;0.0259625934089929!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0259625934089929!GO:0030125;clathrin vesicle coat;0.0260416269423354!GO:0030665;clathrin coated vesicle membrane;0.0260416269423354!GO:0003725;double-stranded RNA binding;0.0265798449361385!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0265963492503596!GO:0042026;protein refolding;0.0268557738412953!GO:0043407;negative regulation of MAP kinase activity;0.0268649134735198!GO:0019903;protein phosphatase binding;0.0268649134735198!GO:0016070;RNA metabolic process;0.0270280683242436!GO:0051427;hormone receptor binding;0.0273212457275163!GO:0003713;transcription coactivator activity;0.0275500629132976!GO:0016079;synaptic vesicle exocytosis;0.0279041319002973!GO:0008088;axon cargo transport;0.0284684045048102!GO:0004004;ATP-dependent RNA helicase activity;0.0285177753796252!GO:0007050;cell cycle arrest;0.028993333663162!GO:0016049;cell growth;0.0292439578401006!GO:0007272;ensheathment of neurons;0.0292439578401006!GO:0008366;axon ensheathment;0.0292439578401006!GO:0000059;protein import into nucleus, docking;0.0292876525806844!GO:0000904;cellular morphogenesis during differentiation;0.029615462695569!GO:0032011;ARF protein signal transduction;0.029951121163514!GO:0032012;regulation of ARF protein signal transduction;0.029951121163514!GO:0007006;mitochondrial membrane organization and biogenesis;0.0303060404210997!GO:0008250;oligosaccharyl transferase complex;0.0313739218494184!GO:0048667;neuron morphogenesis during differentiation;0.0322483939716521!GO:0048812;neurite morphogenesis;0.0322483939716521!GO:0045296;cadherin binding;0.0322483939716521!GO:0042578;phosphoric ester hydrolase activity;0.032455871602245!GO:0016272;prefoldin complex;0.0328296183644995!GO:0001508;regulation of action potential;0.0329554761229477!GO:0008286;insulin receptor signaling pathway;0.0330032700740062!GO:0030663;COPI coated vesicle membrane;0.0330032700740062!GO:0030126;COPI vesicle coat;0.0330032700740062!GO:0030659;cytoplasmic vesicle membrane;0.0330032700740062!GO:0031175;neurite development;0.0332958279227275!GO:0006713;glucocorticoid catabolic process;0.0334069550359143!GO:0019894;kinesin binding;0.0334477602984436!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0334491058654665!GO:0005092;GDP-dissociation inhibitor activity;0.0338181365819757!GO:0006378;mRNA polyadenylation;0.0341970113415148!GO:0007243;protein kinase cascade;0.0341970113415148!GO:0048666;neuron development;0.0352125012431498!GO:0006611;protein export from nucleus;0.0354404189318427!GO:0016615;malate dehydrogenase activity;0.0361530990099523!GO:0005832;chaperonin-containing T-complex;0.036881956205972!GO:0046489;phosphoinositide biosynthetic process;0.0370549792770862!GO:0004183;carboxypeptidase E activity;0.0375249531402684!GO:0030070;insulin processing;0.0375249531402684!GO:0045211;postsynaptic membrane;0.0377584672425179!GO:0048168;regulation of neuronal synaptic plasticity;0.0379367242710554!GO:0001726;ruffle;0.0379862358397583!GO:0051252;regulation of RNA metabolic process;0.0386737443792448!GO:0000287;magnesium ion binding;0.039159210664979!GO:0065009;regulation of a molecular function;0.0394515806182887!GO:0043087;regulation of GTPase activity;0.0398163931041048!GO:0046903;secretion;0.0404887073541048!GO:0035257;nuclear hormone receptor binding;0.0414981405154856!GO:0017091;AU-rich element binding;0.0419673382321265!GO:0050779;RNA destabilization;0.0419673382321265!GO:0000289;poly(A) tail shortening;0.0419673382321265!GO:0005815;microtubule organizing center;0.0425159367119172!GO:0030119;AP-type membrane coat adaptor complex;0.0426721978026877!GO:0006644;phospholipid metabolic process;0.0440464956826865!GO:0030911;TPR domain binding;0.0445019392521025!GO:0004860;protein kinase inhibitor activity;0.0446167039305224!GO:0006695;cholesterol biosynthetic process;0.0447833055131437!GO:0004423;iduronate-2-sulfatase activity;0.045128693645007!GO:0003690;double-stranded DNA binding;0.0462925605060043!GO:0001666;response to hypoxia;0.0475611456449224!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0479783914757355!GO:0015002;heme-copper terminal oxidase activity;0.0479783914757355!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0479783914757355!GO:0004129;cytochrome-c oxidase activity;0.0479783914757355!GO:0043403;skeletal muscle regeneration;0.0479783914757355!GO:0051539;4 iron, 4 sulfur cluster binding;0.048541629276115!GO:0006626;protein targeting to mitochondrion;0.0490086444968032!GO:0004576;oligosaccharyl transferase activity;0.0490453542088232!GO:0006661;phosphatidylinositol biosynthetic process;0.0493124457975974 | |||
|sample_id=10167 | |sample_id=10167 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=amygdala | |sample_tissue=amygdala | ||
|top_motifs=HOXA9_MEIS1:3.75316446268;REST:3.59473352349;CUX2:3.51743377964;PRRX1,2:3.43748627379;DBP:3.38293404536;AHR_ARNT_ARNT2:3.37472538219;RFX1:3.18277017381;ATF2:3.09995605042;MTE{core}:3.04829659614;ZBTB6:3.03481221844;NHLH1,2:3.01390678698;FOXM1:2.89198837453;OCT4_SOX2{dimer}:2.88345831949;ZFP161:2.87788160493;MED-1{core}:2.87452525718;MYFfamily:2.84335695011;RREB1:2.75132941604;MTF1:2.72342865591;RFX2..5_RFXANK_RFXAP:2.72286273783;POU6F1:2.57005902889;NKX3-2:2.54586691562;PRDM1:2.43914636694;HOX{A4,D4}:2.41218051362;NKX2-3_NKX2-5:2.30505627348;GATA4:2.29079774948;PAX6:2.27967971284;EGR1..3:2.24326902138;NFIX:2.1794317346;GTF2I:2.16308546664;SMAD1..7,9:2.15268747587;KLF4:2.11721667188;NANOG:2.04827576865;PAX4:2.02466954939;MZF1:2.00420477813;HBP1_HMGB_SSRP1_UBTF:1.9448071446;JUN:1.91982302346;TEF:1.87881963172;GFI1B:1.87309609314;PAX5:1.79089729879;HAND1,2:1.73812807164;MAFB:1.72203973194;CDC5L:1.70372652141;SOX2:1.70214315012;POU5F1:1.68154258312;ALX1:1.65278708856;LMO2:1.64858207982;SOX17:1.62977859536;BREu{core}:1.59710320071;TGIF1:1.57990957333;NRF1:1.56753741764;TFAP2B:1.55608992192;GCM1,2:1.52900893919;HIC1:1.50420466562;PATZ1:1.50001390631;POU1F1:1.47793171572;ESRRA:1.43411093615;RBPJ:1.3916385219;SOX5:1.38038293207;LEF1_TCF7_TCF7L1,2:1.37686887661;MAZ:1.37186582769;ARID5B:1.35059559238;NKX6-1,2:1.26216994261;IKZF2:1.16491648015;FOXP3:1.14593580963;MYOD1:1.11425580622;FOX{F1,F2,J1}:1.06947574644;TLX2:1.02846432135;ZNF384:0.997925061183;ZIC1..3:0.986247358961;SOX{8,9,10}:0.962283274212;POU3F1..4:0.889968421649;TFDP1:0.876636914697;ADNP_IRX_SIX_ZHX:0.871689139213;HMGA1,2:0.846344530987;ONECUT1,2:0.828366756674;XBP1:0.774236274392;IKZF1:0.762845448279;ZNF423:0.758360109225;FOXP1:0.754947796974;CREB1:0.754668539083;STAT1,3:0.738646037741;PDX1:0.732848155696;NFIL3:0.709167233625;GZF1:0.680193776319;SREBF1,2:0.622892803969;MEF2{A,B,C,D}:0.601385510682;BPTF:0.592149564612;ZEB1:0.563723654582;ZBTB16:0.542054062548;ZNF238:0.500970260541;NR3C1:0.491993020651;GTF2A1,2:0.487936699369;SPZ1:0.47727236812;UFEwm:0.468326940309;ATF5_CREB3:0.440551180682;FOXN1:0.40306981445;LHX3,4:0.403014199852;ZNF143:0.391740019983;TLX1..3_NFIC{dimer}:0.361846935166;EBF1:0.341760319631;HMX1:0.334432947321;STAT2,4,6:0.291660599527;MYBL2:0.271827900332;T:0.267748441734;NKX3-1:0.255839550987;PAX1,9:0.248523306989;RORA:0.248217288296;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.21869636635;TBX4,5:0.214785739831;YY1:0.200693723692;HSF1,2:0.155946607917;PBX1:0.150047496099;PAX2:0.120288919912;FOXA2:0.117572066613;HOX{A6,A7,B6,B7}:0.107584172614;SP1:0.0995832949824;AIRE:0.0757951834068;CDX1,2,4:0.0757632047133;EP300:0.0705797723001;PAX3,7:0.0363724817797;FOX{D1,D2}:0.0150494286643;NANOG{mouse}:0.00753985776367;GFI1:-0.0239021812285;bHLH_family:-0.0288421815414;AR:-0.03612679648;EVI1:-0.0697519183869;IRF7:-0.102237935781;TOPORS:-0.130708964553;VSX1,2:-0.139344244888;ATF4:-0.143891140337;TFAP2{A,C}:-0.173933038414;NFE2L1:-0.204047970165;FOXL1:-0.220323073722;FOXQ1:-0.243945585133;SNAI1..3:-0.252399563059;PAX8:-0.265271300651;ATF6:-0.278532858497;FOXD3:-0.294864276143;DMAP1_NCOR{1,2}_SMARC:-0.328042035608;CRX:-0.36966046745;IRF1,2:-0.43555145868;CEBPA,B_DDIT3:-0.444771649671;GATA6:-0.463115081946;SPI1:-0.466907505145;NFY{A,B,C}:-0.469459802114;NFE2L2:-0.489437548149;NFE2:-0.513275624595;TAL1_TCF{3,4,12}:-0.577863719424;SPIB:-0.594392859929;PITX1..3:-0.602271253803;TBP:-0.625003204082;HNF1A:-0.644002123229;GLI1..3:-0.696454075123;RXRA_VDR{dimer}:-0.700486074502;BACH2:-0.740947413542;FOSL2:-0.750185940252;HNF4A_NR2F1,2:-0.824575487597;NFATC1..3:-0.835831737926;TP53:-0.842948475459;TFAP4:-0.880263768931;FOXO1,3,4:-0.918219233237;HES1:-0.928346266262;TFCP2:-0.929557601815;FOS_FOS{B,L1}_JUN{B,D}:-0.945121747584;XCPE1{core}:-0.974672798484;ETS1,2:-0.986182682394;TEAD1:-1.01878530661;RUNX1..3:-1.03580472682;HIF1A:-1.05672166121;HLF:-1.11148550406;FOX{I1,J2}:-1.14719747407;NR5A1,2:-1.14817775093;MYB:-1.18059595208;NFKB1_REL_RELA:-1.26911692357;ALX4:-1.29104237639;E2F1..5:-1.29942392623;ZNF148:-1.36868190414;NR1H4:-1.38615834399;SRF:-1.38761779864;PPARG:-1.50117026619;ELF1,2,4:-1.57477201357;ELK1,4_GABP{A,B1}:-1.62587535427;POU2F1..3:-1.7480981536;NKX2-2,8:-1.76973338656;RXR{A,B,G}:-1.77334956786;STAT5{A,B}:-2.06184802499;EN1,2:-2.11233457982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.18983371557;HOX{A5,B5}:-2.24034241046;ESR1:-2.42797898259;NKX2-1,4:-2.69107152043;NR6A1:-2.72939123173 | |top_motifs=HOXA9_MEIS1:3.75316446268;REST:3.59473352349;CUX2:3.51743377964;PRRX1,2:3.43748627379;DBP:3.38293404536;AHR_ARNT_ARNT2:3.37472538219;RFX1:3.18277017381;ATF2:3.09995605042;MTE{core}:3.04829659614;ZBTB6:3.03481221844;NHLH1,2:3.01390678698;FOXM1:2.89198837453;OCT4_SOX2{dimer}:2.88345831949;ZFP161:2.87788160493;MED-1{core}:2.87452525718;MYFfamily:2.84335695011;RREB1:2.75132941604;MTF1:2.72342865591;RFX2..5_RFXANK_RFXAP:2.72286273783;POU6F1:2.57005902889;NKX3-2:2.54586691562;PRDM1:2.43914636694;HOX{A4,D4}:2.41218051362;NKX2-3_NKX2-5:2.30505627348;GATA4:2.29079774948;PAX6:2.27967971284;EGR1..3:2.24326902138;NFIX:2.1794317346;GTF2I:2.16308546664;SMAD1..7,9:2.15268747587;KLF4:2.11721667188;NANOG:2.04827576865;PAX4:2.02466954939;MZF1:2.00420477813;HBP1_HMGB_SSRP1_UBTF:1.9448071446;JUN:1.91982302346;TEF:1.87881963172;GFI1B:1.87309609314;PAX5:1.79089729879;HAND1,2:1.73812807164;MAFB:1.72203973194;CDC5L:1.70372652141;SOX2:1.70214315012;POU5F1:1.68154258312;ALX1:1.65278708856;LMO2:1.64858207982;SOX17:1.62977859536;BREu{core}:1.59710320071;TGIF1:1.57990957333;NRF1:1.56753741764;TFAP2B:1.55608992192;GCM1,2:1.52900893919;HIC1:1.50420466562;PATZ1:1.50001390631;POU1F1:1.47793171572;ESRRA:1.43411093615;RBPJ:1.3916385219;SOX5:1.38038293207;LEF1_TCF7_TCF7L1,2:1.37686887661;MAZ:1.37186582769;ARID5B:1.35059559238;NKX6-1,2:1.26216994261;IKZF2:1.16491648015;FOXP3:1.14593580963;MYOD1:1.11425580622;FOX{F1,F2,J1}:1.06947574644;TLX2:1.02846432135;ZNF384:0.997925061183;ZIC1..3:0.986247358961;SOX{8,9,10}:0.962283274212;POU3F1..4:0.889968421649;TFDP1:0.876636914697;ADNP_IRX_SIX_ZHX:0.871689139213;HMGA1,2:0.846344530987;ONECUT1,2:0.828366756674;XBP1:0.774236274392;IKZF1:0.762845448279;ZNF423:0.758360109225;FOXP1:0.754947796974;CREB1:0.754668539083;STAT1,3:0.738646037741;PDX1:0.732848155696;NFIL3:0.709167233625;GZF1:0.680193776319;SREBF1,2:0.622892803969;MEF2{A,B,C,D}:0.601385510682;BPTF:0.592149564612;ZEB1:0.563723654582;ZBTB16:0.542054062548;ZNF238:0.500970260541;NR3C1:0.491993020651;GTF2A1,2:0.487936699369;SPZ1:0.47727236812;UFEwm:0.468326940309;ATF5_CREB3:0.440551180682;FOXN1:0.40306981445;LHX3,4:0.403014199852;ZNF143:0.391740019983;TLX1..3_NFIC{dimer}:0.361846935166;EBF1:0.341760319631;HMX1:0.334432947321;STAT2,4,6:0.291660599527;MYBL2:0.271827900332;T:0.267748441734;NKX3-1:0.255839550987;PAX1,9:0.248523306989;RORA:0.248217288296;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.21869636635;TBX4,5:0.214785739831;YY1:0.200693723692;HSF1,2:0.155946607917;PBX1:0.150047496099;PAX2:0.120288919912;FOXA2:0.117572066613;HOX{A6,A7,B6,B7}:0.107584172614;SP1:0.0995832949824;AIRE:0.0757951834068;CDX1,2,4:0.0757632047133;EP300:0.0705797723001;PAX3,7:0.0363724817797;FOX{D1,D2}:0.0150494286643;NANOG{mouse}:0.00753985776367;GFI1:-0.0239021812285;bHLH_family:-0.0288421815414;AR:-0.03612679648;EVI1:-0.0697519183869;IRF7:-0.102237935781;TOPORS:-0.130708964553;VSX1,2:-0.139344244888;ATF4:-0.143891140337;TFAP2{A,C}:-0.173933038414;NFE2L1:-0.204047970165;FOXL1:-0.220323073722;FOXQ1:-0.243945585133;SNAI1..3:-0.252399563059;PAX8:-0.265271300651;ATF6:-0.278532858497;FOXD3:-0.294864276143;DMAP1_NCOR{1,2}_SMARC:-0.328042035608;CRX:-0.36966046745;IRF1,2:-0.43555145868;CEBPA,B_DDIT3:-0.444771649671;GATA6:-0.463115081946;SPI1:-0.466907505145;NFY{A,B,C}:-0.469459802114;NFE2L2:-0.489437548149;NFE2:-0.513275624595;TAL1_TCF{3,4,12}:-0.577863719424;SPIB:-0.594392859929;PITX1..3:-0.602271253803;TBP:-0.625003204082;HNF1A:-0.644002123229;GLI1..3:-0.696454075123;RXRA_VDR{dimer}:-0.700486074502;BACH2:-0.740947413542;FOSL2:-0.750185940252;HNF4A_NR2F1,2:-0.824575487597;NFATC1..3:-0.835831737926;TP53:-0.842948475459;TFAP4:-0.880263768931;FOXO1,3,4:-0.918219233237;HES1:-0.928346266262;TFCP2:-0.929557601815;FOS_FOS{B,L1}_JUN{B,D}:-0.945121747584;XCPE1{core}:-0.974672798484;ETS1,2:-0.986182682394;TEAD1:-1.01878530661;RUNX1..3:-1.03580472682;HIF1A:-1.05672166121;HLF:-1.11148550406;FOX{I1,J2}:-1.14719747407;NR5A1,2:-1.14817775093;MYB:-1.18059595208;NFKB1_REL_RELA:-1.26911692357;ALX4:-1.29104237639;E2F1..5:-1.29942392623;ZNF148:-1.36868190414;NR1H4:-1.38615834399;SRF:-1.38761779864;PPARG:-1.50117026619;ELF1,2,4:-1.57477201357;ELK1,4_GABP{A,B1}:-1.62587535427;POU2F1..3:-1.7480981536;NKX2-2,8:-1.76973338656;RXR{A,B,G}:-1.77334956786;STAT5{A,B}:-2.06184802499;EN1,2:-2.11233457982;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.18983371557;HOX{A5,B5}:-2.24034241046;ESR1:-2.42797898259;NKX2-1,4:-2.69107152043;NR6A1:-2.72939123173 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10167-103B5;search_select_hide=table117:FF:10167-103B5 | |||
}} | }} | ||
Latest revision as of 12:24, 3 June 2020
| Name: | amygdala - adult, donor10196 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13793 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13793
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13793
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0751 |
| 10 | 10 | 0.0333 |
| 100 | 100 | 0.257 |
| 101 | 101 | 0.279 |
| 102 | 102 | 0.756 |
| 103 | 103 | 0.19 |
| 104 | 104 | 0.121 |
| 105 | 105 | 0.144 |
| 106 | 106 | 0.034 |
| 107 | 107 | 0.102 |
| 108 | 108 | 0.853 |
| 109 | 109 | 0.00233 |
| 11 | 11 | 0.015 |
| 110 | 110 | 0.0603 |
| 111 | 111 | 0.383 |
| 112 | 112 | 0.495 |
| 113 | 113 | 0.443 |
| 114 | 114 | 0.464 |
| 115 | 115 | 0.88 |
| 116 | 116 | 0.123 |
| 117 | 117 | 0.0059 |
| 118 | 118 | 0.122 |
| 119 | 119 | 0.196 |
| 12 | 12 | 0.506 |
| 120 | 120 | 0.256 |
| 121 | 121 | 0.348 |
| 122 | 122 | 0.652 |
| 123 | 123 | 0.829 |
| 124 | 124 | 0.0164 |
| 125 | 125 | 0.512 |
| 126 | 126 | 0.0295 |
| 127 | 127 | 0.451 |
| 128 | 128 | 0.22 |
| 129 | 129 | 0.594 |
| 13 | 13 | 3.23748e-4 |
| 130 | 130 | 0.0758 |
| 131 | 131 | 0.0772 |
| 132 | 132 | 0.591 |
| 133 | 133 | 0.00155 |
| 134 | 134 | 0.579 |
| 135 | 135 | 0.115 |
| 136 | 136 | 7.11523e-4 |
| 137 | 137 | 0.781 |
| 138 | 138 | 0.853 |
| 139 | 139 | 0.309 |
| 14 | 14 | 0.811 |
| 140 | 140 | 0.407 |
| 141 | 141 | 0.586 |
| 142 | 142 | 0.749 |
| 143 | 143 | 0.106 |
| 144 | 144 | 0.81 |
| 145 | 145 | 0.141 |
| 146 | 146 | 0.292 |
| 147 | 147 | 0.741 |
| 148 | 148 | 0.476 |
| 149 | 149 | 0.242 |
| 15 | 15 | 0.0949 |
| 150 | 150 | 0.14 |
| 151 | 151 | 0.532 |
| 152 | 152 | 0.0442 |
| 153 | 153 | 0.848 |
| 154 | 154 | 0.343 |
| 155 | 155 | 0.623 |
| 156 | 156 | 0.816 |
| 157 | 157 | 0.408 |
| 158 | 158 | 0.435 |
| 159 | 159 | 0.0474 |
| 16 | 16 | 0.0769 |
| 160 | 160 | 0.321 |
| 161 | 161 | 0.198 |
| 162 | 162 | 0.968 |
| 163 | 163 | 0.46 |
| 164 | 164 | 0.0256 |
| 165 | 165 | 0.0332 |
| 166 | 166 | 0.424 |
| 167 | 167 | 0.799 |
| 168 | 168 | 0.45 |
| 169 | 169 | 0.0138 |
| 17 | 17 | 0.122 |
| 18 | 18 | 0.229 |
| 19 | 19 | 0.172 |
| 2 | 2 | 0.795 |
| 20 | 20 | 0.0907 |
| 21 | 21 | 0.0715 |
| 22 | 22 | 0.143 |
| 23 | 23 | 0.5 |
| 24 | 24 | 0.0243 |
| 25 | 25 | 0.507 |
| 26 | 26 | 1.20523e-5 |
| 27 | 27 | 0.863 |
| 28 | 28 | 0.685 |
| 29 | 29 | 0.0149 |
| 3 | 3 | 0.0351 |
| 30 | 30 | 0.819 |
| 31 | 31 | 0.882 |
| 32 | 32 | 0.0355 |
| 33 | 33 | 0.0583 |
| 34 | 34 | 0.559 |
| 35 | 35 | 0.775 |
| 36 | 36 | 0.215 |
| 37 | 37 | 0.0376 |
| 38 | 38 | 0.425 |
| 39 | 39 | 0.208 |
| 4 | 4 | 0.873 |
| 40 | 40 | 0.0387 |
| 41 | 41 | 0.516 |
| 42 | 42 | 0.212 |
| 43 | 43 | 0.0955 |
| 44 | 44 | 0.272 |
| 45 | 45 | 0.671 |
| 46 | 46 | 0.131 |
| 47 | 47 | 0.0967 |
| 48 | 48 | 0.0399 |
| 49 | 49 | 0.183 |
| 5 | 5 | 0.549 |
| 50 | 50 | 0.151 |
| 51 | 51 | 0.491 |
| 52 | 52 | 0.46 |
| 53 | 53 | 0.862 |
| 54 | 54 | 0.336 |
| 55 | 55 | 0.353 |
| 56 | 56 | 0.409 |
| 57 | 57 | 0.332 |
| 58 | 58 | 0.436 |
| 59 | 59 | 0.069 |
| 6 | 6 | 0.846 |
| 60 | 60 | 0.0384 |
| 61 | 61 | 0.0411 |
| 62 | 62 | 0.364 |
| 63 | 63 | 0.134 |
| 64 | 64 | 0.305 |
| 65 | 65 | 0.356 |
| 66 | 66 | 0.096 |
| 67 | 67 | 0.242 |
| 68 | 68 | 0.0652 |
| 69 | 69 | 0.539 |
| 7 | 7 | 0.0278 |
| 70 | 70 | 0.136 |
| 71 | 71 | 0.00969 |
| 72 | 72 | 0.298 |
| 73 | 73 | 0.0176 |
| 74 | 74 | 0.801 |
| 75 | 75 | 0.021 |
| 76 | 76 | 0.438 |
| 77 | 77 | 0.164 |
| 78 | 78 | 0.00124 |
| 79 | 79 | 0.388 |
| 8 | 8 | 0.0956 |
| 80 | 80 | 0.577 |
| 81 | 81 | 0.881 |
| 82 | 82 | 0.694 |
| 83 | 83 | 0.0106 |
| 84 | 84 | 0.399 |
| 85 | 85 | 0.285 |
| 86 | 86 | 0.143 |
| 87 | 87 | 1.61448e-4 |
| 88 | 88 | 0.748 |
| 89 | 89 | 0.954 |
| 9 | 9 | 0.398 |
| 90 | 90 | 0.0669 |
| 91 | 91 | 0.769 |
| 92 | 92 | 0.988 |
| 93 | 93 | 0.649 |
| 94 | 94 | 0.395 |
| 95 | 95 | 0.0117 |
| 96 | 96 | 0.996 |
| 97 | 97 | 0.689 |
| 98 | 98 | 0.533 |
| 99 | 99 | 0.617 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13793
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0001876 (amygdala)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
0000349 (limbic system)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010151 (human amygdala - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
