FFCP PHASE1:Hg19::chr13:28494130..28494168,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3651 | |EntrezGene=3651 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6107 | |HGNC=6107 | ||
|TSSclassifier=strong | |||
|UniProt=P52945 | |UniProt=P52945 | ||
|association_with_transcript=0bp_to_ENST00000381033,NM_000209,uc001urt.2_5end | |association_with_transcript=0bp_to_ENST00000381033,NM_000209,uc001urt.2_5end | ||
|cluster_id=chr13:28494130..28494168,+ | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_1_at_PDX1_5end | |description=CAGE_peak_1_at_PDX1_5end | ||
|id=chr13:28494130..28494168,+ | |id=chr13:28494130..28494168,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.18e-08!254;CL:0002178!3.49e-08!3;CL:0000223!6.41e-07!59 | |ontology_enrichment_celltype=CL:0000066!3.18e-08!254;CL:0002178!3.49e-08!3;CL:0000223!6.41e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002563;8.04e-16;4!CL:0002253;1.07e-14;2!CL:0002178;4.73e-10;3!CL:0002251;2.51e-08;20!CL:1001319;4.56e-08;1!CL:1000600;4.56e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,7.84e-16,4;CL:0002253,1.11e-14,2;CL:0002178,4.73e-10,3;CL:0002251,2.49e-08,20;CL:1001319,5.07e-08,1;CL:1000600,5.07e-08,1 | |||
|ontology_enrichment_development_v019=UBERON:0006242;2.99e-08;1 | |||
|ontology_enrichment_disease=DOID:305!8.76e-23!106;DOID:3119!7.41e-19!14;DOID:0050687!3.57e-16!143;DOID:162!2.47e-14!235;DOID:14566!9.49e-14!239;DOID:299!6.80e-13!25 | |||
|ontology_enrichment_disease_v019=DOID:3119;5.66e-23;14!DOID:4929;1.74e-14;2!DOID:299;1.54e-12;25!DOID:0060060;1.63e-08;1!DOID:0060061;1.63e-08;1!DOID:8691;1.63e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3119,5.56e-23,14;DOID:4929,1.47e-14,2;DOID:299,1.48e-12,25;DOID:0060060,1.63e-08,1;DOID:0060061,1.63e-08,1;DOID:8691,1.63e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005409!5.69e-22!35;UBERON:0000160!3.59e-16!27;UBERON:0004921!4.57e-13!129;UBERON:0004185!4.57e-13!129;UBERON:0001007!7.97e-12!155;UBERON:0001555!7.97e-12!155;UBERON:0007026!7.97e-12!155;UBERON:0002108!9.75e-12!14;UBERON:0004119!4.87e-10!169;UBERON:0000925!4.87e-10!169;UBERON:0006595!4.87e-10!169;UBERON:0000077!1.87e-08!130;UBERON:0003350!2.66e-08!5;UBERON:0002294!2.73e-08!7;UBERON:0001173!2.73e-08!7;UBERON:0004912!2.73e-08!7;UBERON:0002114!3.00e-08!12;UBERON:0000945!2.32e-07!8;UBERON:0010039!2.32e-07!8;UBERON:0002075!2.70e-07!18 | |ontology_enrichment_uberon=UBERON:0005409!5.69e-22!35;UBERON:0000160!3.59e-16!27;UBERON:0004921!4.57e-13!129;UBERON:0004185!4.57e-13!129;UBERON:0001007!7.97e-12!155;UBERON:0001555!7.97e-12!155;UBERON:0007026!7.97e-12!155;UBERON:0002108!9.75e-12!14;UBERON:0004119!4.87e-10!169;UBERON:0000925!4.87e-10!169;UBERON:0006595!4.87e-10!169;UBERON:0000077!1.87e-08!130;UBERON:0003350!2.66e-08!5;UBERON:0002294!2.73e-08!7;UBERON:0001173!2.73e-08!7;UBERON:0004912!2.73e-08!7;UBERON:0002114!3.00e-08!12;UBERON:0000945!2.32e-07!8;UBERON:0010039!2.32e-07!8;UBERON:0002075!2.70e-07!18 | ||
|ontology_enrichment_uberon_v019=UBERON:0005409;5.79e-34;22!UBERON:0000160;2.12e-29;17!UBERON:0002108;1.70e-22;4!UBERON:0004921;2.95e-19;33!UBERON:0001052;8.04e-16;4!UBERON:0001242;8.04e-16;4!UBERON:0001262;8.04e-16;4!UBERON:0004786;8.04e-16;4!UBERON:0004808;8.04e-16;4!UBERON:0001277;8.04e-16;4!UBERON:0003350;9.86e-14;8!UBERON:0004907;9.02e-13;5!UBERON:0002114;3.58e-10;2!UBERON:0000059;3.63e-10;11!UBERON:0002110;5.81e-10;3!UBERON:0002075;2.40e-09;18!UBERON:0000485;2.86e-09;7!UBERON:0003929;2.86e-09;7!UBERON:0002294;3.49e-09;7!UBERON:0001173;3.49e-09;7!UBERON:0004645;4.56e-08;1!UBERON:0001256;4.56e-08;1!UBERON:0001259;4.56e-08;1!UBERON:0004913;6.24e-08;1!UBERON:0003703;6.24e-08;1!UBERON:0001174;6.24e-08;1!UBERON:0004914;6.24e-08;1!UBERON:0001155;1.77e-07;9!UBERON:0002331;4.03e-07;10!UBERON:0001555;4.60e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,7.58e-30,25;UBERON:0000160,2.02e-29,17;UBERON:0002108,1.52e-22,4;UBERON:0001242,7.84e-16,4;UBERON:0001262,7.84e-16,4;UBERON:0004786,7.84e-16,4;UBERON:0004808,7.84e-16,4;UBERON:0001277,7.84e-16,4;UBERON:0001052,8.68e-16,4;UBERON:0003350,1.02e-13,8;UBERON:0004907,9.59e-13,5;UBERON:0002114,3.27e-10,2;UBERON:0000059,3.76e-10,11;UBERON:0002110,5.94e-10,3;UBERON:0006242,5.94e-10,3;UBERON:0002075,2.47e-09,18;UBERON:0001046,1.03e-08,19;UBERON:0004645,5.07e-08,1;UBERON:0001256,5.07e-08,1;UBERON:0001259,5.07e-08,1;UBERON:0004913,5.43e-08,1;UBERON:0003703,5.43e-08,1;UBERON:0001174,5.43e-08,1;UBERON:0004914,5.43e-08,1;UBERON:0001007,1.35e-07,145;UBERON:0001555,1.35e-07,145;UBERON:0007026,1.35e-07,145;UBERON:0001155,1.79e-07,9;UBERON:0000485,2.56e-07,9;UBERON:0002294,2.92e-07,9;UBERON:0001173,2.92e-07,9;UBERON:0004912,2.92e-07,9;UBERON:0004921,2.98e-07,118;UBERON:0002331,4.03e-07,10;UBERON:0000358,4.03e-07,10;UBERON:0000307,4.03e-07,10;UBERON:0000091,4.03e-07,10;UBERON:0000087,4.03e-07,10;UBERON:0007010,4.03e-07,10;UBERON:0007806,4.03e-07,10;UBERON:0008780,4.03e-07,10;UBERON:0005728,4.03e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0.236132343941038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65890789101569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.85990269714523,0,0.121360521749513,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,104.30015761167,0,10.4622084641909,0,0.539210106883961,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0.694499979733169,0,0,0,0,0,0,0.435753854075961,0.278847488557207,0,0,0,0,0.977826347298073,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,2.12029607150911,11.901375185815,0,26.1834390929884,0.611030144933625,122.166705016416,115.53228291498,84.4773571499134,0,0,0,0,0.391329237864179,0,0,44.7665649380056,0,0,2.85614496887536,0.829505531177977,0,0.330991955875499,0.627865836814451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,1.17330829640882,0,8.1112138000954,0.999048047910651,4.7549837660855,0.343609788497747,33.2894295852211,0,0.124252535565433,0,0,0.209205692624666,0,0,0,0,0,0,61.2527535470803,0,0,0,0,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0.984274815147488,0,0,0,0,0,0,0.449947783103001,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0.211312123358627,41.5973783378254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,0,0,0.690359926060101,0,0,0,15.6302802246619,0,0,1.92212912082159,0,0,0,0,0,0,0,0,0.511049710558381,0.535701835878287,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,1.12108865325516,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.223710863595585,5.20196238160788,0.731507549893617,0,0,0,0,0,0.198950775161368,0.356760272332706,0.22589216407792,0,0,14.7402641986174,14.6434905537651,0.940634592723046,0,0.471353094203252,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0.730336388246517,0,0,0,0,0,55.0187914136016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186224142887574,0,0,0,0,0,0,0.860666464712116,0,2.11648498388534,0,0,8.62321940223234,0,0,0.406896178315738,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.164201178899891,0.236132343941038,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72183813960359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65890789101569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.85990269714523,0,0.121360521749513,0,0.284136146806413,0,0,0,0,0,0,0,0,0,0,104.30015761167,0,10.4622084641909,0,0.539210106883961,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.341380344856499,0,0,0,0,0.694499979733169,0,0,0,0,0,0,0.435753854075961,0.278847488557207,0,0,0,0,0.977826347298073,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,2.12029607150911,11.901375185815,0,26.1834390929884,0.611030144933625,122.166705016416,115.53228291498,84.4773571499134,0,0,0,0,0.391329237864179,0,0,44.7665649380056,0,0,2.85614496887536,0.829505531177977,0,0.330991955875499,0.627865836814451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,1.17330829640882,0,8.1112138000954,0.999048047910651,4.7549837660855,0.343609788497747,33.2894295852211,0,0.124252535565433,0,0,0.209205692624666,0,0,0,0,0,0,61.2527535470803,0,0,0,0,0,0,0,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0.984274815147488,0,0,0,0,0,0,0.449947783103001,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638341257770182,0,0,0,0,0.314108192500469,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0.468334905806882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0.211312123358627,41.5973783378254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0,0,0,0.690359926060101,0,0,0,15.6302802246619,0,0,1.92212912082159,0,0,0,0,0,0,0,0,0.511049710558381,0.535701835878287,0,0,0,0,0,0,0,0,0.118193840883968,0,0,0,1.12108865325516,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0.223710863595585,5.20196238160788,0.731507549893617,0,0,0,0,0,0.198950775161368,0.356760272332706,0.22589216407792,0,0,14.7402641986174,14.6434905537651,0.940634592723046,0,0.471353094203252,0,0,0,0,0,0,0,0.178553938605658,0.352894871715692,0,0.730336388246517,0,0,0,0,0,55.0187914136016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.186224142887574,0,0,0,0,0,0,0.860666464712116,0,2.11648498388534,0,0,8.62321940223234,0,0,0.406896178315738,0,0,0 | ||
|short_description=p1@PDX1 | |short_description=p1@PDX1 | ||
}} | }} |
Latest revision as of 23:29, 16 September 2015
Short description: | p1@PDX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDX1_5end |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | 0bp_to_ENST00000381033, NM_000209, uc001urt.2_5end |
EntrezGene: | PDX1 |
HGNC: | 6107 |
UniProt: | P52945 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 7.84e-16 | 4 |
epithelial cell of large intestine | 1.11e-14 | 2 |
epithelial cell of stomach | 4.73e-10 | 3 |
epithelial cell of alimentary canal | 2.49e-08 | 20 |
bladder cell | 5.07e-08 | 1 |
lower urinary tract cell | 5.07e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system cancer | 5.56e-23 | 14 |
tubular adenocarcinoma | 1.47e-14 | 2 |
adenocarcinoma | 1.48e-12 | 25 |
non-Hodgkin lymphoma | 1.63e-08 | 1 |
cutaneous T cell lymphoma | 1.63e-08 | 1 |
mycosis fungoides | 1.63e-08 | 1 |