FFCP PHASE1:Hg19::chr12:6161828..6161837,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:6161828..6161837,- | |||
|description=CAGE_peak_at_chr12:6161828..6161837,- | |description=CAGE_peak_at_chr12:6161828..6161837,- | ||
|id=chr12:6161828..6161837,- | |id=chr12:6161828..6161837,- | ||
|ontology_enrichment_celltype=CL:0002139!8.77e-27!24;CL:0000115!8.06e-21!35;CL:0000071!3.14e-16!18;CL:0002546!3.14e-16!18;CL:0002144!4.62e-16!3;CL:0002078!5.64e-16!44;CL:0005020!3.67e-13!6;CL:0002138!3.67e-13!6;CL:0005022!3.67e-13!6;CL:0000213!1.09e-11!57;CL:0000215!1.09e-11!57;CL:1000413!7.51e-09!9 | |ontology_enrichment_celltype=CL:0002139!8.77e-27!24;CL:0000115!8.06e-21!35;CL:0000071!3.14e-16!18;CL:0002546!3.14e-16!18;CL:0002144!4.62e-16!3;CL:0002078!5.64e-16!44;CL:0005020!3.67e-13!6;CL:0002138!3.67e-13!6;CL:0005022!3.67e-13!6;CL:0000213!1.09e-11!57;CL:0000215!1.09e-11!57;CL:1000413!7.51e-09!9 | ||
|ontology_enrichment_celltype_v019=CL:0002144;9.74e-88;3!CL:0000071;9.05e-16;18!CL:0002188;1.60e-14;5!CL:0000115;4.72e-14;36!CL:0002139;3.97e-12;24!CL:0002078;6.97e-12;45!CL:1000746;8.99e-11;7!CL:1000612;8.99e-11;7!CL:0000213;1.11e-09;58!CL:0000215;1.11e-09;58!CL:0002681;7.92e-07;12!CL:0002584;7.92e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,6.24e-88,3;CL:0000115,1.62e-17,36;CL:0000071,8.40e-16,18;CL:0002546,8.40e-16,18;CL:0002188,1.83e-14,5;CL:0002078,3.03e-14,45;CL:0002139,3.75e-12,24;CL:0000213,2.67e-11,58;CL:0000215,2.67e-11,58;CL:1000746,9.89e-11,7;CL:1000612,9.89e-11,7;CL:0002681,8.38e-07,12;CL:0002584,8.38e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;9.05e-16;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.56e-21!115;UBERON:0001986!3.14e-16!18;UBERON:0004638!3.14e-16!18;UBERON:0004852!3.14e-16!18;UBERON:0001915!4.62e-16!3;UBERON:0001982!4.62e-16!3;UBERON:0000487!4.87e-13!22;UBERON:0000055!1.86e-12!69;UBERON:0006914!2.57e-11!25;UBERON:0002049!1.84e-10!79;UBERON:0007798!1.84e-10!79;UBERON:0001473!6.85e-10!8;UBERON:0004536!6.85e-10!8;UBERON:0006558!6.85e-10!8;UBERON:0003915!7.51e-09!9;UBERON:0004700!7.51e-09!9;UBERON:0001917!7.51e-09!9;UBERON:0004111!2.31e-08!241;UBERON:0000477!2.70e-08!286;UBERON:0002465!6.38e-08!10;UBERON:0001981!1.25e-07!60;UBERON:0007500!1.25e-07!60;UBERON:0004537!1.25e-07!60;UBERON:0006965!1.25e-07!60;UBERON:0003978!2.11e-07!3;UBERON:0009751!2.11e-07!3;UBERON:0000946!2.11e-07!3;UBERON:0002523!2.11e-07!3;UBERON:0005983!2.11e-07!3;UBERON:0002165!2.11e-07!3;UBERON:0002062!2.11e-07!3;UBERON:0007280!2.11e-07!3;UBERON:0001009!2.14e-07!113;UBERON:0002240!2.47e-07!3 | |ontology_enrichment_uberon=UBERON:0007023!2.56e-21!115;UBERON:0001986!3.14e-16!18;UBERON:0004638!3.14e-16!18;UBERON:0004852!3.14e-16!18;UBERON:0001915!4.62e-16!3;UBERON:0001982!4.62e-16!3;UBERON:0000487!4.87e-13!22;UBERON:0000055!1.86e-12!69;UBERON:0006914!2.57e-11!25;UBERON:0002049!1.84e-10!79;UBERON:0007798!1.84e-10!79;UBERON:0001473!6.85e-10!8;UBERON:0004536!6.85e-10!8;UBERON:0006558!6.85e-10!8;UBERON:0003915!7.51e-09!9;UBERON:0004700!7.51e-09!9;UBERON:0001917!7.51e-09!9;UBERON:0004111!2.31e-08!241;UBERON:0000477!2.70e-08!286;UBERON:0002465!6.38e-08!10;UBERON:0001981!1.25e-07!60;UBERON:0007500!1.25e-07!60;UBERON:0004537!1.25e-07!60;UBERON:0006965!1.25e-07!60;UBERON:0003978!2.11e-07!3;UBERON:0009751!2.11e-07!3;UBERON:0000946!2.11e-07!3;UBERON:0002523!2.11e-07!3;UBERON:0005983!2.11e-07!3;UBERON:0002165!2.11e-07!3;UBERON:0002062!2.11e-07!3;UBERON:0007280!2.11e-07!3;UBERON:0001009!2.14e-07!113;UBERON:0002240!2.47e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0010523;9.74e-88;3!UBERON:0001915;9.74e-88;3!UBERON:0001982;9.74e-88;3!UBERON:0004638;9.05e-16;18!UBERON:0001986;9.05e-16;18!UBERON:0004852;9.05e-16;18!UBERON:0000487;4.01e-13;22!UBERON:0006914;1.09e-11;25!UBERON:0000074;8.99e-11;7!UBERON:0001229;8.99e-11;7!UBERON:0000490;1.25e-08;33!UBERON:0001225;7.92e-07;12!UBERON:0008987;7.92e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,6.24e-88,3;UBERON:0001915,6.24e-88,3;UBERON:0001982,6.24e-88,3;UBERON:0004638,8.40e-16,18;UBERON:0001986,8.40e-16,18;UBERON:0004852,8.40e-16,18;UBERON:0000487,3.77e-13,22;UBERON:0006914,1.03e-11,25;UBERON:0010532,9.89e-11,7;UBERON:0000074,9.89e-11,7;UBERON:0001229,9.89e-11,7;UBERON:0001230,9.89e-11,7;UBERON:0003220,9.89e-11,7;UBERON:0005749,9.89e-11,7;UBERON:0004199,9.89e-11,7;UBERON:0004209,9.89e-11,7;UBERON:0004198,9.89e-11,7;UBERON:0005103,1.47e-09,8;UBERON:0000083,1.47e-09,8;UBERON:0009201,1.47e-09,8;UBERON:0006553,1.47e-09,8;UBERON:0003074,1.47e-09,8;UBERON:0003060,1.47e-09,8;UBERON:0000080,1.21e-08,9;UBERON:0002120,1.21e-08,9;UBERON:0004875,1.21e-08,9;UBERON:0005721,1.21e-08,9;UBERON:0005754,1.21e-08,9;UBERON:0007297,1.21e-08,9;UBERON:0004876,2.63e-07,11;UBERON:0001225,8.38e-07,12;UBERON:0008987,8.38e-07,12;UBERON:0003887,8.38e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0.550236083880135,0,0,0.71153252537342,0.66944122552934,1.20848795132744,0.760272105718513,1.95249646038536,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.427149650270779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.0939839179798536,0,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985123076837112,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0.217716747896961,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0.419499436209906,0.550236083880135,0,0,0.71153252537342,0.66944122552934,1.20848795132744,0.760272105718513,1.95249646038536,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0.229160424011684,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.427149650270779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0.297046400327086,0,0,0.0939839179798536,0,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.985123076837112,0,0,0,0,0,0.0645889098360061,0.0620747142958579,0,0,0,0.217716747896961,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | ||
|short_description=p@chr12:6161828..6161837,- | |short_description=p@chr12:6161828..6161837,- | ||
}} | }} |
Latest revision as of 11:04, 24 July 2015
Short description: | p@chr12:6161828..6161837, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:6161828..6161837, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 6.24e-88 | 3 |
endothelial cell | 1.62e-17 | 36 |
blood vessel endothelial cell | 8.40e-16 | 18 |
embryonic blood vessel endothelial progenitor cell | 8.40e-16 | 18 |
glomerular endothelial cell | 1.83e-14 | 5 |
meso-epithelial cell | 3.03e-14 | 45 |
endothelial cell of vascular tree | 3.75e-12 | 24 |
lining cell | 2.67e-11 | 58 |
barrier cell | 2.67e-11 | 58 |
glomerular cell | 9.89e-11 | 7 |
kidney corpuscule cell | 9.89e-11 | 7 |
kidney cortical cell | 8.38e-07 | 12 |
renal cortical epithelial cell | 8.38e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
microcirculatory vessel | 6.24e-88 | 3 |
endothelium of capillary | 6.24e-88 | 3 |
capillary | 6.24e-88 | 3 |
blood vessel endothelium | 8.40e-16 | 18 |
endothelium | 8.40e-16 | 18 |
cardiovascular system endothelium | 8.40e-16 | 18 |
simple squamous epithelium | 3.77e-13 | 22 |
squamous epithelium | 1.03e-11 | 25 |
primitive nephron | 9.89e-11 | 7 |
renal glomerulus | 9.89e-11 | 7 |
renal corpuscle | 9.89e-11 | 7 |
glomerular capsule | 9.89e-11 | 7 |
metanephric mesenchyme | 9.89e-11 | 7 |
glomerular tuft | 9.89e-11 | 7 |
S-shaped body | 9.89e-11 | 7 |
renal vesicle | 9.89e-11 | 7 |
comma-shaped body | 9.89e-11 | 7 |
mesonephric epithelium | 1.47e-09 | 8 |
mesonephric tubule | 1.47e-09 | 8 |
nephric duct | 1.47e-09 | 8 |
renal duct | 1.47e-09 | 8 |
mesonephric duct | 1.47e-09 | 8 |
pronephric duct | 1.47e-09 | 8 |
mesonephros | 1.21e-08 | 9 |
pronephros | 1.21e-08 | 9 |
nephrogenic cord | 1.21e-08 | 9 |
pronephric mesoderm | 1.21e-08 | 9 |
rostral part of nephrogenic cord | 1.21e-08 | 9 |
presumptive pronephric mesoderm | 1.21e-08 | 9 |
urogenital ridge | 2.63e-07 | 11 |
cortex of kidney | 8.38e-07 | 12 |
renal parenchyma | 8.38e-07 | 12 |
intraembryonic coelom | 8.38e-07 | 12 |