FF:11898-125E8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005125 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007782;DRR008654;DRZ000079;DRZ001464;DRZ011429;DRZ012814 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0104978,FF:0100297,FF:0101120,FF:0011132 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
Line 35: | Line 41: | ||
|fonse_treatment_closure=FF:0000343,FF:0011132,FF:11898-125E8 | |fonse_treatment_closure=FF:0000343,FF:0011132,FF:11898-125E8 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep1.CNhs13479.11898-125E8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep1.CNhs13479.11898-125E8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep1.CNhs13479.11898-125E8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep1.CNhs13479.11898-125E8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520mock%2520treated%252c%2520biol_rep1.CNhs13479.11898-125E8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11898-125E8 | |id=FF:11898-125E8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011132 | ||
|is_obsolete= | |||
|library_id=CNhs13479 | |||
|library_id_phase_based=2:CNhs13479 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11898 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11898 | |||
|name=Hep-2 cells mock treated, biol_rep1 | |name=Hep-2 cells mock treated, biol_rep1 | ||
|namespace= | |namespace= | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13479,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13479,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 54: | Line 75: | ||
|rna_rin=9.7 | |rna_rin=9.7 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.25E+10 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=56 | |sample_age=56 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=Hep-2 | |sample_cell_line=Hep-2 | ||
Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.65185375434339e-263!GO:0043226;organelle;1.84518086498933e-214!GO:0043231;intracellular membrane-bound organelle;1.84518086498933e-214!GO:0043227;membrane-bound organelle;1.97563844291165e-214!GO:0043229;intracellular organelle;6.77280481425779e-214!GO:0005737;cytoplasm;1.06368574950121e-202!GO:0044422;organelle part;4.19115038845663e-178!GO:0044446;intracellular organelle part;2.70137201684642e-176!GO:0044444;cytoplasmic part;7.6447986673991e-151!GO:0032991;macromolecular complex;2.43639192392292e-124!GO:0030529;ribonucleoprotein complex;3.26413288634796e-103!GO:0005739;mitochondrion;4.63907747060288e-98!GO:0044237;cellular metabolic process;2.40830751765888e-95!GO:0044238;primary metabolic process;8.7778341655026e-92!GO:0044428;nuclear part;8.06150408121634e-90!GO:0043233;organelle lumen;9.78572362746986e-89!GO:0031974;membrane-enclosed lumen;9.78572362746986e-89!GO:0005634;nucleus;9.24302041857083e-85!GO:0003723;RNA binding;9.24302041857083e-85!GO:0043170;macromolecule metabolic process;8.59679683508592e-79!GO:0005515;protein binding;1.8043642447218e-68!GO:0043234;protein complex;2.57107976700905e-63!GO:0044429;mitochondrial part;5.50967149310431e-63!GO:0006396;RNA processing;6.49391979505204e-63!GO:0005840;ribosome;3.97599581018804e-62!GO:0006412;translation;1.43756853763412e-59!GO:0031090;organelle membrane;4.94019268876797e-58!GO:0031967;organelle envelope;3.6644722210713e-55!GO:0031975;envelope;5.94630891762443e-55!GO:0003735;structural constituent of ribosome;1.09470609255456e-53!GO:0031981;nuclear lumen;4.83168772694749e-52!GO:0044249;cellular biosynthetic process;2.07471015631793e-51!GO:0009058;biosynthetic process;9.14283090146183e-51!GO:0016043;cellular component organization and biogenesis;3.28267263748549e-50!GO:0033279;ribosomal subunit;6.71973986497368e-47!GO:0006259;DNA metabolic process;4.95806118362303e-45!GO:0019538;protein metabolic process;1.75894959151937e-44!GO:0043228;non-membrane-bound organelle;1.75894959151937e-44!GO:0043232;intracellular non-membrane-bound organelle;1.75894959151937e-44!GO:0015031;protein transport;4.84262216413656e-44!GO:0033036;macromolecule localization;8.43095545942406e-44!GO:0005829;cytosol;3.58283393207207e-43!GO:0016071;mRNA metabolic process;8.17931075363125e-43!GO:0009059;macromolecule biosynthetic process;1.18321441986251e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.42263082161827e-42!GO:0008380;RNA splicing;2.26910488989756e-41!GO:0043283;biopolymer metabolic process;9.5458405831831e-41!GO:0005740;mitochondrial envelope;2.56537539853728e-40!GO:0045184;establishment of protein localization;2.96839202694666e-40!GO:0008104;protein localization;9.54208437131743e-40!GO:0044260;cellular macromolecule metabolic process;3.50516616914356e-39!GO:0044267;cellular protein metabolic process;6.27363540657811e-39!GO:0006397;mRNA processing;6.27363540657811e-39!GO:0019866;organelle inner membrane;1.52486992371321e-38!GO:0006996;organelle organization and biogenesis;6.09945125959176e-38!GO:0031966;mitochondrial membrane;6.35135599244912e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.35135599244912e-38!GO:0010467;gene expression;4.03966249001512e-37!GO:0065003;macromolecular complex assembly;8.66967326647257e-37!GO:0005743;mitochondrial inner membrane;2.12663658973525e-36!GO:0046907;intracellular transport;4.43382249134322e-34!GO:0007049;cell cycle;7.20487997670569e-34!GO:0022607;cellular component assembly;4.37850444248213e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.60567693489724e-31!GO:0005681;spliceosome;1.99204918317531e-30!GO:0005654;nucleoplasm;5.84337664299189e-30!GO:0006886;intracellular protein transport;2.28242836698598e-29!GO:0000166;nucleotide binding;6.41921517062566e-28!GO:0031980;mitochondrial lumen;6.41921517062566e-28!GO:0005759;mitochondrial matrix;6.41921517062566e-28!GO:0044445;cytosolic part;2.40928815628461e-26!GO:0006974;response to DNA damage stimulus;2.76084857444102e-26!GO:0006119;oxidative phosphorylation;5.27851096013967e-26!GO:0044455;mitochondrial membrane part;8.17786289964818e-26!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.01801193489532e-25!GO:0016462;pyrophosphatase activity;1.15344816572833e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;1.42619322736992e-25!GO:0005730;nucleolus;1.56235034950844e-25!GO:0015934;large ribosomal subunit;3.20838014349951e-25!GO:0005694;chromosome;3.9102208389911e-25!GO:0022402;cell cycle process;3.9102208389911e-25!GO:0000278;mitotic cell cycle;6.12942111838497e-25!GO:0017111;nucleoside-triphosphatase activity;1.1740018769045e-24!GO:0044451;nucleoplasm part;1.50462336419053e-23!GO:0044427;chromosomal part;1.75473650843173e-23!GO:0003676;nucleic acid binding;4.74804404272062e-23!GO:0015935;small ribosomal subunit;6.7206600960885e-23!GO:0051649;establishment of cellular localization;1.94949011492237e-22!GO:0051641;cellular localization;2.49784875903836e-22!GO:0006281;DNA repair;3.09211954248303e-22!GO:0051186;cofactor metabolic process;3.2082571073132e-22!GO:0006457;protein folding;6.57169304922505e-22!GO:0012505;endomembrane system;2.49219374686445e-21!GO:0005783;endoplasmic reticulum;6.28902222786886e-21!GO:0016874;ligase activity;8.63811662563762e-21!GO:0006260;DNA replication;5.75266316627481e-20!GO:0022403;cell cycle phase;8.39779991371225e-20!GO:0005746;mitochondrial respiratory chain;1.24187298915628e-19!GO:0009719;response to endogenous stimulus;1.51489369941849e-19!GO:0042254;ribosome biogenesis and assembly;1.86266841401007e-19!GO:0005761;mitochondrial ribosome;2.55212775919609e-19!GO:0000313;organellar ribosome;2.55212775919609e-19!GO:0032553;ribonucleotide binding;3.5890740773214e-19!GO:0032555;purine ribonucleotide binding;3.5890740773214e-19!GO:0022618;protein-RNA complex assembly;3.73132886415003e-19!GO:0017076;purine nucleotide binding;5.40703093413777e-19!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.78821353971456e-18!GO:0000087;M phase of mitotic cell cycle;2.31519479552934e-18!GO:0044432;endoplasmic reticulum part;2.93839894391551e-18!GO:0007067;mitosis;4.42399325087427e-18!GO:0051276;chromosome organization and biogenesis;6.47415228347844e-18!GO:0006732;coenzyme metabolic process;7.78548818152577e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.47122176647576e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.47122176647576e-17!GO:0003954;NADH dehydrogenase activity;1.47122176647576e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.47122176647576e-17!GO:0005524;ATP binding;3.22061285648698e-17!GO:0032559;adenyl ribonucleotide binding;4.79824480839863e-17!GO:0008135;translation factor activity, nucleic acid binding;6.65600055088792e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.00031281239254e-16!GO:0044265;cellular macromolecule catabolic process;1.14048115839901e-16!GO:0030554;adenyl nucleotide binding;1.20871550824053e-16!GO:0016887;ATPase activity;1.23824814377564e-16!GO:0051301;cell division;1.65804885701788e-16!GO:0042623;ATPase activity, coupled;1.92540412196246e-16!GO:0006512;ubiquitin cycle;2.05883737047382e-16!GO:0044248;cellular catabolic process;3.06782491779134e-16!GO:0006605;protein targeting;3.49832108001087e-16!GO:0042775;organelle ATP synthesis coupled electron transport;8.07811067138753e-16!GO:0042773;ATP synthesis coupled electron transport;8.07811067138753e-16!GO:0006399;tRNA metabolic process;9.13260839187743e-16!GO:0000279;M phase;1.31725730420105e-15!GO:0005635;nuclear envelope;1.46796172816296e-15!GO:0044453;nuclear membrane part;1.46931110240762e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.52368636066219e-15!GO:0045271;respiratory chain complex I;1.52368636066219e-15!GO:0005747;mitochondrial respiratory chain complex I;1.52368636066219e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.36331691355496e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;3.458074510093e-15!GO:0051082;unfolded protein binding;3.83989025880262e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.71582134984854e-15!GO:0031965;nuclear membrane;5.15774847909987e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;5.16695333871575e-15!GO:0000375;RNA splicing, via transesterification reactions;5.16695333871575e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.16695333871575e-15!GO:0019941;modification-dependent protein catabolic process;6.01730765162043e-15!GO:0043632;modification-dependent macromolecule catabolic process;6.01730765162043e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.18126964646048e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.00059697441042e-14!GO:0044257;cellular protein catabolic process;1.01111289552147e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.46592864233828e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.88010391146907e-14!GO:0048770;pigment granule;2.17115081120832e-14!GO:0042470;melanosome;2.17115081120832e-14!GO:0005789;endoplasmic reticulum membrane;2.18285800109854e-14!GO:0000785;chromatin;3.53649558780775e-14!GO:0006323;DNA packaging;6.78650288147723e-14!GO:0009055;electron carrier activity;8.58740081810159e-14!GO:0008134;transcription factor binding;1.05211097691912e-13!GO:0009057;macromolecule catabolic process;1.05791278929467e-13!GO:0051726;regulation of cell cycle;1.20430074265669e-13!GO:0043285;biopolymer catabolic process;1.20430074265669e-13!GO:0000074;regulation of progression through cell cycle;1.31637857981012e-13!GO:0006364;rRNA processing;1.87436489689181e-13!GO:0005643;nuclear pore;1.97160008694873e-13!GO:0016070;RNA metabolic process;1.98580918696143e-13!GO:0016072;rRNA metabolic process;5.44112882211067e-13!GO:0003743;translation initiation factor activity;6.30272803082576e-13!GO:0009259;ribonucleotide metabolic process;7.17591000194432e-13!GO:0065002;intracellular protein transport across a membrane;7.35364904736196e-13!GO:0048193;Golgi vesicle transport;1.11906679871339e-12!GO:0012501;programmed cell death;1.61494621938514e-12!GO:0051188;cofactor biosynthetic process;1.68593676482166e-12!GO:0006333;chromatin assembly or disassembly;1.71690512267622e-12!GO:0006163;purine nucleotide metabolic process;2.23835456667653e-12!GO:0006915;apoptosis;2.82776558001934e-12!GO:0006913;nucleocytoplasmic transport;3.08666097637436e-12!GO:0006413;translational initiation;3.2781650334518e-12!GO:0065004;protein-DNA complex assembly;5.28862161600151e-12!GO:0050657;nucleic acid transport;6.34089759159311e-12!GO:0051236;establishment of RNA localization;6.34089759159311e-12!GO:0050658;RNA transport;6.34089759159311e-12!GO:0004386;helicase activity;7.52591539549493e-12!GO:0006403;RNA localization;7.54011863437755e-12!GO:0051169;nuclear transport;1.00025016046756e-11!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.28779408678087e-11!GO:0016604;nuclear body;1.32999073772914e-11!GO:0030163;protein catabolic process;1.70870999548769e-11!GO:0046930;pore complex;1.78787175542794e-11!GO:0009150;purine ribonucleotide metabolic process;2.37018801111962e-11!GO:0008026;ATP-dependent helicase activity;2.96836472804339e-11!GO:0009260;ribonucleotide biosynthetic process;3.34604281823097e-11!GO:0008219;cell death;3.9799036740009e-11!GO:0016265;death;3.9799036740009e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.24106638617703e-11!GO:0006164;purine nucleotide biosynthetic process;4.51019746557273e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.01061144762069e-11!GO:0008565;protein transporter activity;1.7751639342122e-10!GO:0009108;coenzyme biosynthetic process;1.94320948022312e-10!GO:0007005;mitochondrion organization and biogenesis;2.13768956558358e-10!GO:0016192;vesicle-mediated transport;2.66817896806173e-10!GO:0009117;nucleotide metabolic process;2.68431794933883e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.91274134481825e-10!GO:0006461;protein complex assembly;3.12278624092431e-10!GO:0006446;regulation of translational initiation;3.18721657729501e-10!GO:0009060;aerobic respiration;3.21601028214017e-10!GO:0009199;ribonucleoside triphosphate metabolic process;3.53993623034615e-10!GO:0016779;nucleotidyltransferase activity;3.89533857512524e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.24466631857099e-10!GO:0009141;nucleoside triphosphate metabolic process;4.46762935031837e-10!GO:0006334;nucleosome assembly;4.53485514038045e-10!GO:0051028;mRNA transport;4.62465362181158e-10!GO:0009152;purine ribonucleotide biosynthetic process;4.72002595659819e-10!GO:0016491;oxidoreductase activity;4.82768309818126e-10!GO:0005794;Golgi apparatus;5.07232282479845e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.94329496620006e-10!GO:0009144;purine nucleoside triphosphate metabolic process;8.94329496620006e-10!GO:0006366;transcription from RNA polymerase II promoter;9.46924303980814e-10!GO:0043412;biopolymer modification;9.78881019003317e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.11770984447441e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.11770984447441e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.11770984447441e-09!GO:0045333;cellular respiration;1.11770984447441e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.18320905016774e-09!GO:0006261;DNA-dependent DNA replication;1.46863342375334e-09!GO:0031497;chromatin assembly;1.47011070139422e-09!GO:0015986;ATP synthesis coupled proton transport;1.58271826967787e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.58271826967787e-09!GO:0008639;small protein conjugating enzyme activity;1.83223588824653e-09!GO:0043038;amino acid activation;2.3483413883499e-09!GO:0006418;tRNA aminoacylation for protein translation;2.3483413883499e-09!GO:0043039;tRNA aminoacylation;2.3483413883499e-09!GO:0003697;single-stranded DNA binding;2.4363503381849e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.95039579478812e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.95039579478812e-09!GO:0046034;ATP metabolic process;3.38421820900703e-09!GO:0016607;nuclear speck;3.64554936519655e-09!GO:0019787;small conjugating protein ligase activity;3.78864487021437e-09!GO:0043566;structure-specific DNA binding;3.90287785427785e-09!GO:0017038;protein import;4.56415508140658e-09!GO:0009056;catabolic process;4.83796197935488e-09!GO:0004842;ubiquitin-protein ligase activity;5.70334204711764e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.65444984738558e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.65444984738558e-09!GO:0019829;cation-transporting ATPase activity;1.36427449504042e-08!GO:0006099;tricarboxylic acid cycle;1.36427449504042e-08!GO:0046356;acetyl-CoA catabolic process;1.36427449504042e-08!GO:0006084;acetyl-CoA metabolic process;2.08767766883963e-08!GO:0005819;spindle;2.26379393608422e-08!GO:0016787;hydrolase activity;2.26379393608422e-08!GO:0042981;regulation of apoptosis;2.35848044015275e-08!GO:0016740;transferase activity;2.39983280871759e-08!GO:0043067;regulation of programmed cell death;2.4389489424852e-08!GO:0006754;ATP biosynthetic process;2.4389489424852e-08!GO:0006753;nucleoside phosphate metabolic process;2.4389489424852e-08!GO:0016881;acid-amino acid ligase activity;2.77528834042691e-08!GO:0000775;chromosome, pericentric region;2.79209955672837e-08!GO:0051329;interphase of mitotic cell cycle;3.15388055637795e-08!GO:0051325;interphase;3.72440703394118e-08!GO:0003712;transcription cofactor activity;4.03572778992512e-08!GO:0006752;group transfer coenzyme metabolic process;5.69545983030216e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.79632982589722e-08!GO:0016469;proton-transporting two-sector ATPase complex;6.21975844262793e-08!GO:0005793;ER-Golgi intermediate compartment;8.34976900468124e-08!GO:0006464;protein modification process;8.69998607526779e-08!GO:0008033;tRNA processing;1.35223573151242e-07!GO:0005657;replication fork;1.41362714156528e-07!GO:0051187;cofactor catabolic process;2.112595466996e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.18459239097804e-07!GO:0006091;generation of precursor metabolites and energy;2.6496481489799e-07!GO:0005762;mitochondrial large ribosomal subunit;2.88316617782366e-07!GO:0000315;organellar large ribosomal subunit;2.88316617782366e-07!GO:0016568;chromatin modification;2.9035734903061e-07!GO:0008094;DNA-dependent ATPase activity;3.13757036705915e-07!GO:0045259;proton-transporting ATP synthase complex;3.13757036705915e-07!GO:0009109;coenzyme catabolic process;3.4979512537471e-07!GO:0003899;DNA-directed RNA polymerase activity;3.66403408532261e-07!GO:0043623;cellular protein complex assembly;3.79141227000935e-07!GO:0006888;ER to Golgi vesicle-mediated transport;4.05623300738897e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.44211148251318e-07!GO:0008654;phospholipid biosynthetic process;4.65563178941489e-07!GO:0005768;endosome;4.78862694717232e-07!GO:0007051;spindle organization and biogenesis;5.75848053593962e-07!GO:0015630;microtubule cytoskeleton;5.8800673821247e-07!GO:0030120;vesicle coat;7.39193497989314e-07!GO:0030662;coated vesicle membrane;7.39193497989314e-07!GO:0000075;cell cycle checkpoint;8.0611328071476e-07!GO:0000245;spliceosome assembly;8.32096237781845e-07!GO:0043687;post-translational protein modification;1.03626336277909e-06!GO:0043069;negative regulation of programmed cell death;1.14259062848153e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.23344943658348e-06!GO:0006916;anti-apoptosis;1.36248074481514e-06!GO:0000786;nucleosome;1.4622190989143e-06!GO:0005667;transcription factor complex;1.48683320263018e-06!GO:0051427;hormone receptor binding;1.54917675124102e-06!GO:0003724;RNA helicase activity;1.65720064245195e-06!GO:0043066;negative regulation of apoptosis;1.76976233013979e-06!GO:0032446;protein modification by small protein conjugation;1.84153247088204e-06!GO:0016853;isomerase activity;1.85346572296552e-06!GO:0051246;regulation of protein metabolic process;1.85346572296552e-06!GO:0009165;nucleotide biosynthetic process;2.26187488256474e-06!GO:0048523;negative regulation of cellular process;2.29919968828379e-06!GO:0004298;threonine endopeptidase activity;2.29919968828379e-06!GO:0016567;protein ubiquitination;2.61160704394853e-06!GO:0048475;coated membrane;2.68006732734254e-06!GO:0030117;membrane coat;2.68006732734254e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;3.07218911685999e-06!GO:0000314;organellar small ribosomal subunit;3.080883694851e-06!GO:0005763;mitochondrial small ribosomal subunit;3.080883694851e-06!GO:0051170;nuclear import;3.68991689809975e-06!GO:0035257;nuclear hormone receptor binding;3.7228702979547e-06!GO:0000151;ubiquitin ligase complex;3.95098433716315e-06!GO:0044452;nucleolar part;4.97143793304876e-06!GO:0051168;nuclear export;5.05010440034897e-06!GO:0006613;cotranslational protein targeting to membrane;5.36802955828536e-06!GO:0006302;double-strand break repair;7.26316350254938e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.6851759200314e-06!GO:0006626;protein targeting to mitochondrion;1.19598129131263e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.20290609979828e-05!GO:0005813;centrosome;1.25737243679068e-05!GO:0003924;GTPase activity;1.32907611875099e-05!GO:0006606;protein import into nucleus;1.4241339769258e-05!GO:0031324;negative regulation of cellular metabolic process;1.48391916890274e-05!GO:0046474;glycerophospholipid biosynthetic process;1.60210445487428e-05!GO:0003682;chromatin binding;1.78862957257773e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.80462527400454e-05!GO:0006414;translational elongation;1.83193661204409e-05!GO:0008168;methyltransferase activity;1.93892112323744e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.96276846987934e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.96480930774206e-05!GO:0046483;heterocycle metabolic process;1.97566691763483e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.17813985284133e-05!GO:0015399;primary active transmembrane transporter activity;2.17813985284133e-05!GO:0045454;cell redox homeostasis;2.1959210426323e-05!GO:0006082;organic acid metabolic process;2.25241168166198e-05!GO:0005815;microtubule organizing center;2.25241168166198e-05!GO:0019752;carboxylic acid metabolic process;2.30890384269278e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.91885485364332e-05!GO:0045786;negative regulation of progression through cell cycle;2.9482559139468e-05!GO:0044440;endosomal part;3.00117131650232e-05!GO:0010008;endosome membrane;3.00117131650232e-05!GO:0005788;endoplasmic reticulum lumen;3.27413215882964e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.31073832805793e-05!GO:0006839;mitochondrial transport;3.37145915764995e-05!GO:0007088;regulation of mitosis;3.64826631305444e-05!GO:0043681;protein import into mitochondrion;5.56901167553203e-05!GO:0030867;rough endoplasmic reticulum membrane;5.71960211522098e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.8025576210043e-05!GO:0008186;RNA-dependent ATPase activity;5.88693215022296e-05!GO:0019867;outer membrane;5.8988803682173e-05!GO:0003713;transcription coactivator activity;6.11142625159874e-05!GO:0016859;cis-trans isomerase activity;6.13081102163723e-05!GO:0043021;ribonucleoprotein binding;6.14544466753967e-05!GO:0046489;phosphoinositide biosynthetic process;6.2129238476356e-05!GO:0048519;negative regulation of biological process;6.27930982100814e-05!GO:0003684;damaged DNA binding;6.4123765202067e-05!GO:0005770;late endosome;6.63217936876308e-05!GO:0051052;regulation of DNA metabolic process;7.20935888024077e-05!GO:0009892;negative regulation of metabolic process;7.22604152203621e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;7.53461150892601e-05!GO:0006612;protein targeting to membrane;7.61735796416582e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.74619477557801e-05!GO:0016126;sterol biosynthetic process;8.07117949578855e-05!GO:0003690;double-stranded DNA binding;8.50601996541252e-05!GO:0031968;organelle outer membrane;8.80607127716312e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;8.82316309743576e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;8.94549940172902e-05!GO:0000776;kinetochore;8.96060877798837e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.03532883735993e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;9.1876045385096e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.3143173036659e-05!GO:0048471;perinuclear region of cytoplasm;9.69607908005938e-05!GO:0006383;transcription from RNA polymerase III promoter;0.000112953965296279!GO:0006793;phosphorus metabolic process;0.000118813145014472!GO:0006796;phosphate metabolic process;0.000118813145014472!GO:0051789;response to protein stimulus;0.000127403147578728!GO:0006986;response to unfolded protein;0.000127403147578728!GO:0008610;lipid biosynthetic process;0.000136647545677593!GO:0007059;chromosome segregation;0.000155566826715131!GO:0005791;rough endoplasmic reticulum;0.000162966597133928!GO:0005773;vacuole;0.000164288246275094!GO:0004004;ATP-dependent RNA helicase activity;0.000166289147644041!GO:0005525;GTP binding;0.00018124082036671!GO:0000059;protein import into nucleus, docking;0.00018124082036671!GO:0050662;coenzyme binding;0.000191182445378222!GO:0030880;RNA polymerase complex;0.000192784832980698!GO:0006650;glycerophospholipid metabolic process;0.000199182429937715!GO:0004527;exonuclease activity;0.000207076879894263!GO:0006695;cholesterol biosynthetic process;0.000245187992665086!GO:0043284;biopolymer biosynthetic process;0.000247007466115483!GO:0006310;DNA recombination;0.000255252715456897!GO:0016564;transcription repressor activity;0.000261209479364904!GO:0005741;mitochondrial outer membrane;0.000282874985113403!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000307280211881911!GO:0003678;DNA helicase activity;0.000308277783105817!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000308948991072683!GO:0004518;nuclease activity;0.000312723063711816!GO:0016310;phosphorylation;0.00034276999616133!GO:0005798;Golgi-associated vesicle;0.00036094340000605!GO:0019843;rRNA binding;0.000391735132793978!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000397116100458509!GO:0043596;nuclear replication fork;0.000402692500814716!GO:0009112;nucleobase metabolic process;0.000430231851990343!GO:0031072;heat shock protein binding;0.000441553371603497!GO:0000323;lytic vacuole;0.00046341389090091!GO:0005764;lysosome;0.00046341389090091!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00048085274093735!GO:0000428;DNA-directed RNA polymerase complex;0.00048085274093735!GO:0033116;ER-Golgi intermediate compartment membrane;0.000490387640975014!GO:0051920;peroxiredoxin activity;0.00049650146242507!GO:0044431;Golgi apparatus part;0.000504051513171265!GO:0016363;nuclear matrix;0.0005251109445271!GO:0003729;mRNA binding;0.000528762228024028!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000541293049364733!GO:0005684;U2-dependent spliceosome;0.00054293668828028!GO:0008361;regulation of cell size;0.000591217676831711!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000599485988263763!GO:0005048;signal sequence binding;0.00061279249540876!GO:0007006;mitochondrial membrane organization and biogenesis;0.000628544675436523!GO:0006506;GPI anchor biosynthetic process;0.000636610420423278!GO:0001558;regulation of cell growth;0.000636932455696974!GO:0042802;identical protein binding;0.000668756857329757!GO:0016049;cell growth;0.000672461107161454!GO:0030176;integral to endoplasmic reticulum membrane;0.000682367517840876!GO:0046467;membrane lipid biosynthetic process;0.000702992830849132!GO:0031988;membrane-bound vesicle;0.000733203871790498!GO:0006284;base-excision repair;0.000745109603017259!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000746880397581476!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000746880397581476!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000746880397581476!GO:0030384;phosphoinositide metabolic process;0.000747822891997509!GO:0065009;regulation of a molecular function;0.000748120977994485!GO:0031252;leading edge;0.000757012195365652!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.000758828134696362!GO:0007052;mitotic spindle organization and biogenesis;0.000760731925810408!GO:0016563;transcription activator activity;0.000821028024494105!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000841794952003566!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000841794952003566!GO:0006275;regulation of DNA replication;0.000844708770197296!GO:0006767;water-soluble vitamin metabolic process;0.00084563386108638!GO:0005885;Arp2/3 protein complex;0.000850233627255953!GO:0051087;chaperone binding;0.000854322433379276!GO:0015992;proton transport;0.000881229508062999!GO:0035258;steroid hormone receptor binding;0.000883109170598536!GO:0043492;ATPase activity, coupled to movement of substances;0.000901132979322844!GO:0016023;cytoplasmic membrane-bound vesicle;0.000903944954290479!GO:0006818;hydrogen transport;0.00101549184241635!GO:0051540;metal cluster binding;0.00101699147242529!GO:0051536;iron-sulfur cluster binding;0.00101699147242529!GO:0003711;transcription elongation regulator activity;0.00104144554721788!GO:0000082;G1/S transition of mitotic cell cycle;0.00109459171453311!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00109459171453311!GO:0006505;GPI anchor metabolic process;0.00116996721950456!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00117351847971104!GO:0006405;RNA export from nucleus;0.00118148081458442!GO:0006520;amino acid metabolic process;0.00118148081458442!GO:0006118;electron transport;0.00118148081458442!GO:0032508;DNA duplex unwinding;0.00120013399895328!GO:0032392;DNA geometric change;0.00120013399895328!GO:0030132;clathrin coat of coated pit;0.00122030224747911!GO:0048500;signal recognition particle;0.0013044456055963!GO:0051287;NAD binding;0.00132362109384493!GO:0048037;cofactor binding;0.00132576374395514!GO:0008312;7S RNA binding;0.00134674255948308!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0013733835933706!GO:0006611;protein export from nucleus;0.00138907852040968!GO:0007093;mitotic cell cycle checkpoint;0.00143395904550477!GO:0016481;negative regulation of transcription;0.00145983680542121!GO:0000049;tRNA binding;0.00149621858640705!GO:0006950;response to stress;0.00151670635590086!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00151742692042046!GO:0006270;DNA replication initiation;0.0015695400893973!GO:0048522;positive regulation of cellular process;0.00157174724679893!GO:0009116;nucleoside metabolic process;0.00157333343046853!GO:0006497;protein amino acid lipidation;0.00173920435447065!GO:0032561;guanyl ribonucleotide binding;0.00174123092300537!GO:0019001;guanyl nucleotide binding;0.00174123092300537!GO:0044262;cellular carbohydrate metabolic process;0.00179643840897789!GO:0008320;protein transmembrane transporter activity;0.00186332424402569!GO:0006733;oxidoreduction coenzyme metabolic process;0.00189645004817114!GO:0005758;mitochondrial intermembrane space;0.0019339001922722!GO:0043601;nuclear replisome;0.0019339001922722!GO:0030894;replisome;0.0019339001922722!GO:0030663;COPI coated vesicle membrane;0.00195685204531455!GO:0030126;COPI vesicle coat;0.00195685204531455!GO:0008180;signalosome;0.00202195179087391!GO:0006007;glucose catabolic process;0.0020603754590341!GO:0005876;spindle microtubule;0.00206798548380653!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00210167896197625!GO:0009451;RNA modification;0.00210167896197625!GO:0048487;beta-tubulin binding;0.00211837206958582!GO:0003746;translation elongation factor activity;0.00217061888758846!GO:0016272;prefoldin complex;0.00225866743014572!GO:0042770;DNA damage response, signal transduction;0.00227538182304943!GO:0005905;coated pit;0.00234285772097095!GO:0042393;histone binding;0.00252855636644842!GO:0000228;nuclear chromosome;0.00255118713971462!GO:0006268;DNA unwinding during replication;0.00258379620450245!GO:0003714;transcription corepressor activity;0.00263310918732735!GO:0051252;regulation of RNA metabolic process;0.00263310918732735!GO:0006352;transcription initiation;0.00264172318893833!GO:0043065;positive regulation of apoptosis;0.00266933119292074!GO:0008408;3'-5' exonuclease activity;0.00267646800449365!GO:0000178;exosome (RNase complex);0.00271173407628569!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00311957845961655!GO:0045047;protein targeting to ER;0.00311957845961655!GO:0008632;apoptotic program;0.00321112042491809!GO:0000086;G2/M transition of mitotic cell cycle;0.00326061930780014!GO:0043068;positive regulation of programmed cell death;0.00336436375745892!GO:0000139;Golgi membrane;0.00340420224408508!GO:0006891;intra-Golgi vesicle-mediated transport;0.00344584247712532!GO:0000096;sulfur amino acid metabolic process;0.0034621324274536!GO:0016044;membrane organization and biogenesis;0.0035025497362806!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00353046472152754!GO:0005769;early endosome;0.00362369149531356!GO:0022884;macromolecule transmembrane transporter activity;0.00367034516246957!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.00367034516246957!GO:0006144;purine base metabolic process;0.00369195500177317!GO:0006595;polyamine metabolic process;0.00393177004131071!GO:0005637;nuclear inner membrane;0.00394491204083524!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00403309895421339!GO:0004532;exoribonuclease activity;0.00409665695655433!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00409665695655433!GO:0031982;vesicle;0.00413642498199433!GO:0030118;clathrin coat;0.0042847759696758!GO:0006401;RNA catabolic process;0.00431636745265729!GO:0030137;COPI-coated vesicle;0.00461394154665624!GO:0006289;nucleotide-excision repair;0.0046680670694414!GO:0045792;negative regulation of cell size;0.00490017341663194!GO:0016408;C-acyltransferase activity;0.00504702189490213!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00514554538020979!GO:0015002;heme-copper terminal oxidase activity;0.00514554538020979!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00514554538020979!GO:0004129;cytochrome-c oxidase activity;0.00514554538020979!GO:0050794;regulation of cellular process;0.00530139472525355!GO:0006400;tRNA modification;0.005346609922154!GO:0008629;induction of apoptosis by intracellular signals;0.00554652852642288!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00555914679410746!GO:0030308;negative regulation of cell growth;0.00561033539164762!GO:0031410;cytoplasmic vesicle;0.00569067417506422!GO:0016407;acetyltransferase activity;0.00631480164854508!GO:0000287;magnesium ion binding;0.00634101690442451!GO:0007010;cytoskeleton organization and biogenesis;0.00638936371983822!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00640038905096966!GO:0008637;apoptotic mitochondrial changes;0.00648600355096133!GO:0050790;regulation of catalytic activity;0.00659691977933277!GO:0004003;ATP-dependent DNA helicase activity;0.00669374913902843!GO:0022890;inorganic cation transmembrane transporter activity;0.00681090834004496!GO:0006402;mRNA catabolic process;0.00681435541059797!GO:0042158;lipoprotein biosynthetic process;0.00689317124060797!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00707156691030522!GO:0007050;cell cycle arrest;0.0071607861680514!GO:0007243;protein kinase cascade;0.00725039270183471!GO:0015631;tubulin binding;0.00729380058996134!GO:0009124;nucleoside monophosphate biosynthetic process;0.00729380058996134!GO:0009123;nucleoside monophosphate metabolic process;0.00729380058996134!GO:0004526;ribonuclease P activity;0.00751946003567432!GO:0043154;negative regulation of caspase activity;0.00761296291834684!GO:0008139;nuclear localization sequence binding;0.00768061449094336!GO:0040008;regulation of growth;0.00768220367669324!GO:0006778;porphyrin metabolic process;0.0077524009230811!GO:0033013;tetrapyrrole metabolic process;0.0077524009230811!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0077524009230811!GO:0004549;tRNA-specific ribonuclease activity;0.00777008267445665!GO:0016251;general RNA polymerase II transcription factor activity;0.00795639978752759!GO:0000922;spindle pole;0.00810905564599281!GO:0008022;protein C-terminus binding;0.00818342864179408!GO:0031970;organelle envelope lumen;0.00821109132792663!GO:0008250;oligosaccharyl transferase complex;0.00841773846929234!GO:0031570;DNA integrity checkpoint;0.00841773846929234!GO:0043624;cellular protein complex disassembly;0.00848554725232969!GO:0006509;membrane protein ectodomain proteolysis;0.00851998788494071!GO:0033619;membrane protein proteolysis;0.00851998788494071!GO:0051338;regulation of transferase activity;0.00874888052040413!GO:0005832;chaperonin-containing T-complex;0.00920145234558827!GO:0006519;amino acid and derivative metabolic process;0.00923335821858053!GO:0030521;androgen receptor signaling pathway;0.00924591061667021!GO:0043022;ribosome binding;0.00939022757451525!GO:0004576;oligosaccharyl transferase activity;0.00939655807719856!GO:0000339;RNA cap binding;0.00947688517128873!GO:0030658;transport vesicle membrane;0.0094798908931284!GO:0019899;enzyme binding;0.0094798908931284!GO:0003725;double-stranded RNA binding;0.00990326015821737!GO:0031902;late endosome membrane;0.010072514336121!GO:0051539;4 iron, 4 sulfur cluster binding;0.0101819413769358!GO:0007021;tubulin folding;0.0103786088028208!GO:0046966;thyroid hormone receptor binding;0.0107795099120347!GO:0016125;sterol metabolic process;0.0110284929914576!GO:0000725;recombinational repair;0.0112034039075238!GO:0000724;double-strand break repair via homologous recombination;0.0112034039075238!GO:0031124;mRNA 3'-end processing;0.0113945307412153!GO:0043433;negative regulation of transcription factor activity;0.0114208543050617!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0117047540847047!GO:0009119;ribonucleoside metabolic process;0.011888450368118!GO:0043549;regulation of kinase activity;0.011888450368118!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0119472055455244!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.012083827900424!GO:0046982;protein heterodimerization activity;0.012083827900424!GO:0032259;methylation;0.0122015204063661!GO:0050681;androgen receptor binding;0.0122330748212802!GO:0006740;NADPH regeneration;0.0122398813273028!GO:0006098;pentose-phosphate shunt;0.0122398813273028!GO:0009303;rRNA transcription;0.0123978038667131!GO:0032984;macromolecular complex disassembly;0.0125785421170033!GO:0043414;biopolymer methylation;0.0126143481766231!GO:0000175;3'-5'-exoribonuclease activity;0.0127597837137289!GO:0006417;regulation of translation;0.0128939278075615!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0130532794545375!GO:0004523;ribonuclease H activity;0.0133846363007039!GO:0005862;muscle thin filament tropomyosin;0.0134802971787931!GO:0045045;secretory pathway;0.014115465118213!GO:0007034;vacuolar transport;0.0141321552143863!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0142702346285095!GO:0045039;protein import into mitochondrial inner membrane;0.0142702346285095!GO:0006096;glycolysis;0.0142897734552065!GO:0007017;microtubule-based process;0.0144039196062556!GO:0006338;chromatin remodeling;0.0147266773835191!GO:0043488;regulation of mRNA stability;0.0147461100922464!GO:0043487;regulation of RNA stability;0.0147461100922464!GO:0005874;microtubule;0.0148414652740194!GO:0044454;nuclear chromosome part;0.0155496949812888!GO:0008652;amino acid biosynthetic process;0.0156659610661227!GO:0046983;protein dimerization activity;0.0156659610661227!GO:0044255;cellular lipid metabolic process;0.015781407966122!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0161720032331059!GO:0044438;microbody part;0.0162174302167131!GO:0044439;peroxisomal part;0.0162174302167131!GO:0004540;ribonuclease activity;0.0163054948325078!GO:0005869;dynactin complex;0.0163054948325078!GO:0009161;ribonucleoside monophosphate metabolic process;0.0163095633312146!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0163095633312146!GO:0043241;protein complex disassembly;0.0164143578958858!GO:0030125;clathrin vesicle coat;0.016617090933937!GO:0030665;clathrin coated vesicle membrane;0.016617090933937!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0166570414377748!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0167130536525525!GO:0030660;Golgi-associated vesicle membrane;0.0170167512913713!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0170473116412589!GO:0030119;AP-type membrane coat adaptor complex;0.0171873185379935!GO:0006779;porphyrin biosynthetic process;0.0172906292774056!GO:0033014;tetrapyrrole biosynthetic process;0.0172906292774056!GO:0006769;nicotinamide metabolic process;0.0181081139371851!GO:0000070;mitotic sister chromatid segregation;0.0183327727902474!GO:0045859;regulation of protein kinase activity;0.0183555380095546!GO:0006378;mRNA polyadenylation;0.0188048821247727!GO:0006643;membrane lipid metabolic process;0.0193030000432687!GO:0005663;DNA replication factor C complex;0.0194044580975735!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0194451545295392!GO:0018196;peptidyl-asparagine modification;0.0197198108683562!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0197198108683562!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0201022414315241!GO:0030131;clathrin adaptor complex;0.020611320336056!GO:0030659;cytoplasmic vesicle membrane;0.0208279121757859!GO:0000819;sister chromatid segregation;0.0212213069639195!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0218570433319375!GO:0006807;nitrogen compound metabolic process;0.0219099069712305!GO:0007346;regulation of progression through mitotic cell cycle;0.0223419092994244!GO:0008538;proteasome activator activity;0.0223708885015468!GO:0008092;cytoskeletal protein binding;0.0229313890672326!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.023002765927963!GO:0004860;protein kinase inhibitor activity;0.0230329385136342!GO:0003923;GPI-anchor transamidase activity;0.0231162584674208!GO:0016255;attachment of GPI anchor to protein;0.0231162584674208!GO:0042765;GPI-anchor transamidase complex;0.0231162584674208!GO:0003702;RNA polymerase II transcription factor activity;0.023216024709074!GO:0050178;phenylpyruvate tautomerase activity;0.023216024709074!GO:0031326;regulation of cellular biosynthetic process;0.0232548878881135!GO:0042168;heme metabolic process;0.0232548878881135!GO:0031903;microbody membrane;0.02349369943263!GO:0005778;peroxisomal membrane;0.02349369943263!GO:0030508;thiol-disulfide exchange intermediate activity;0.0235972145138719!GO:0019362;pyridine nucleotide metabolic process;0.0236820358326744!GO:0045926;negative regulation of growth;0.0236820358326744!GO:0042364;water-soluble vitamin biosynthetic process;0.023770093592858!GO:0000030;mannosyltransferase activity;0.0239145135271487!GO:0046365;monosaccharide catabolic process;0.0241525424024625!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0241750848822568!GO:0010257;NADH dehydrogenase complex assembly;0.0241750848822568!GO:0033108;mitochondrial respiratory chain complex assembly;0.0241750848822568!GO:0000726;non-recombinational repair;0.0243425387559075!GO:0048144;fibroblast proliferation;0.0243509661263087!GO:0048145;regulation of fibroblast proliferation;0.0243509661263087!GO:0032200;telomere organization and biogenesis;0.0244769807442542!GO:0000723;telomere maintenance;0.0244769807442542!GO:0006644;phospholipid metabolic process;0.0244769807442542!GO:0017166;vinculin binding;0.0246708500597665!GO:0048146;positive regulation of fibroblast proliferation;0.0251510670282771!GO:0005774;vacuolar membrane;0.0253323059770628!GO:0006354;RNA elongation;0.0253323059770628!GO:0022411;cellular component disassembly;0.0257498426455538!GO:0051053;negative regulation of DNA metabolic process;0.025821496542639!GO:0006360;transcription from RNA polymerase I promoter;0.0259698647248829!GO:0006220;pyrimidine nucleotide metabolic process;0.0260609489079767!GO:0031529;ruffle organization and biogenesis;0.0260675137844666!GO:0000781;chromosome, telomeric region;0.0261252125041729!GO:0006979;response to oxidative stress;0.0268413072003141!GO:0000152;nuclear ubiquitin ligase complex;0.0273512327005975!GO:0005732;small nucleolar ribonucleoprotein complex;0.0274184265274181!GO:0000792;heterochromatin;0.0276136111324607!GO:0030133;transport vesicle;0.0277121369295364!GO:0051059;NF-kappaB binding;0.0279440911493771!GO:0008234;cysteine-type peptidase activity;0.0279605407770015!GO:0006066;alcohol metabolic process;0.0279787396549504!GO:0030134;ER to Golgi transport vesicle;0.0282140073871844!GO:0006596;polyamine biosynthetic process;0.0286211362357252!GO:0046519;sphingoid metabolic process;0.0297446479431511!GO:0009889;regulation of biosynthetic process;0.0298483737749112!GO:0009003;signal peptidase activity;0.0300985422523736!GO:0001836;release of cytochrome c from mitochondria;0.0302990121757774!GO:0004659;prenyltransferase activity;0.030404746297173!GO:0045936;negative regulation of phosphate metabolic process;0.0305768728932478!GO:0008536;Ran GTPase binding;0.0306599468181744!GO:0043189;H4/H2A histone acetyltransferase complex;0.0306789916150793!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0307093613448379!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0312368076865413!GO:0005669;transcription factor TFIID complex;0.0315322572540987!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0317806672585644!GO:0031123;RNA 3'-end processing;0.0321313832236724!GO:0006376;mRNA splice site selection;0.0323538284561235!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0323538284561235!GO:0006213;pyrimidine nucleoside metabolic process;0.032414523809835!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0326418323625354!GO:0000077;DNA damage checkpoint;0.0326502444854586!GO:0016197;endosome transport;0.0326502444854586!GO:0000910;cytokinesis;0.032696568732431!GO:0009308;amine metabolic process;0.0327001603480985!GO:0050811;GABA receptor binding;0.0327497541276252!GO:0046164;alcohol catabolic process;0.0331538636712366!GO:0006730;one-carbon compound metabolic process;0.03346531415936!GO:0006739;NADP metabolic process;0.0339749843398185!GO:0006541;glutamine metabolic process;0.0341568039944458!GO:0030127;COPII vesicle coat;0.0341568039944458!GO:0012507;ER to Golgi transport vesicle membrane;0.0341568039944458!GO:0004448;isocitrate dehydrogenase activity;0.0345458195762991!GO:0019206;nucleoside kinase activity;0.0345937706795876!GO:0031406;carboxylic acid binding;0.0345958111649918!GO:0005658;alpha DNA polymerase:primase complex;0.0350228197414032!GO:0005784;translocon complex;0.0352909395043687!GO:0046128;purine ribonucleoside metabolic process;0.0355492846465253!GO:0042278;purine nucleoside metabolic process;0.0355492846465253!GO:0006672;ceramide metabolic process;0.0357975355330637!GO:0015036;disulfide oxidoreductase activity;0.035940659326963!GO:0009967;positive regulation of signal transduction;0.036309232735416!GO:0016790;thiolester hydrolase activity;0.0368903271252427!GO:0008601;protein phosphatase type 2A regulator activity;0.0369430551545419!GO:0031577;spindle checkpoint;0.0372799233647469!GO:0019320;hexose catabolic process;0.0373495055766816!GO:0006917;induction of apoptosis;0.0374429495997251!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0375278310565204!GO:0046112;nucleobase biosynthetic process;0.037552942363074!GO:0001522;pseudouridine synthesis;0.0376362652550488!GO:0030027;lamellipodium;0.0379283450541992!GO:0030503;regulation of cell redox homeostasis;0.038347045100786!GO:0012506;vesicle membrane;0.0383541279145643!GO:0030677;ribonuclease P complex;0.0387435968416398!GO:0019783;small conjugating protein-specific protease activity;0.038770030705196!GO:0005996;monosaccharide metabolic process;0.0392211928976944!GO:0045892;negative regulation of transcription, DNA-dependent;0.0397615846655225!GO:0007041;lysosomal transport;0.0399142295286775!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0399246389935668!GO:0016584;nucleosome positioning;0.040226329807498!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0404598189311175!GO:0016788;hydrolase activity, acting on ester bonds;0.0404832858223655!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0407379838602046!GO:0044433;cytoplasmic vesicle part;0.0408965628039843!GO:0009225;nucleotide-sugar metabolic process;0.0411641302282368!GO:0031371;ubiquitin conjugating enzyme complex;0.0413035510834558!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.041418546489388!GO:0008299;isoprenoid biosynthetic process;0.041418546489388!GO:0009066;aspartate family amino acid metabolic process;0.041418546489388!GO:0035267;NuA4 histone acetyltransferase complex;0.0415219360517858!GO:0012502;induction of programmed cell death;0.0416944226875755!GO:0051716;cellular response to stimulus;0.0420552271425543!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0425760691123157!GO:0045893;positive regulation of transcription, DNA-dependent;0.0426262846704532!GO:0007040;lysosome organization and biogenesis;0.042813298216709!GO:0019318;hexose metabolic process;0.0428166583345143!GO:0016417;S-acyltransferase activity;0.0429370152645928!GO:0007033;vacuole organization and biogenesis;0.0431691467628921!GO:0006749;glutathione metabolic process;0.0432421733112608!GO:0016453;C-acetyltransferase activity;0.0435448068808047!GO:0030911;TPR domain binding;0.043788574443637!GO:0008287;protein serine/threonine phosphatase complex;0.0440474717025166!GO:0048518;positive regulation of biological process;0.0446677883245145!GO:0047485;protein N-terminus binding;0.0449075210407319!GO:0004843;ubiquitin-specific protease activity;0.0453671605386456!GO:0008426;protein kinase C inhibitor activity;0.0453750422349539!GO:0008017;microtubule binding;0.0459331027480561!GO:0042769;DNA damage response, detection of DNA damage;0.046325728388574!GO:0005971;ribonucleoside-diphosphate reductase complex;0.0463985486609921!GO:0030433;ER-associated protein catabolic process;0.0466663320251854!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0466663320251854!GO:0030036;actin cytoskeleton organization and biogenesis;0.0473074515010503!GO:0031625;ubiquitin protein ligase binding;0.0473074515010503!GO:0030518;steroid hormone receptor signaling pathway;0.0473547231104043!GO:0001726;ruffle;0.0474651033622766!GO:0007004;telomere maintenance via telomerase;0.0481370822682602!GO:0048468;cell development;0.0484994424737382!GO:0046822;regulation of nucleocytoplasmic transport;0.0493084943280038!GO:0044437;vacuolar part;0.0493380956473521 | |||
|sample_id=11898 | |sample_id=11898 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 99: | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.81113412958;E2F1..5:1.55887653721;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.47173407883;ESRRA:1.45948202654;HES1:1.42465093997;ELK1,4_GABP{A,B1}:1.33940202614;FOXM1:1.23570658031;PPARG:1.21525038421;NR5A1,2:1.20291547788;NKX3-1:1.14199373793;YY1:1.11206075823;HIF1A:1.07259181867;FOXQ1:0.954409189296;NRF1:0.919731387698;FOXD3:0.913945025778;PAX1,9:0.895583898103;bHLH_family:0.856675919542;FOXN1:0.849993754164;ZNF143:0.812941503169;NFY{A,B,C}:0.797567402886;NKX3-2:0.75033033735;NR6A1:0.740540017465;MYB:0.734561090004;PAX5:0.66716543326;EP300:0.660351899876;HNF4A_NR2F1,2:0.657038387387;HOX{A6,A7,B6,B7}:0.630400687809;ARID5B:0.603734237799;GCM1,2:0.58328398655;SNAI1..3:0.561726623193;POU1F1:0.533437110113;TEAD1:0.494608671317;ZEB1:0.483987523372;RXR{A,B,G}:0.469254004949;TEF:0.449300045366;UFEwm:0.416767861943;TBX4,5:0.399100345744;IKZF2:0.376031041741;ALX4:0.375567018453;IKZF1:0.355395855371;TP53:0.310618185392;TFDP1:0.293259076887;ZNF148:0.291388482649;VSX1,2:0.265887391445;GFI1:0.262221880856;IRF7:0.251869745759;NFE2L1:0.2373357053;MYBL2:0.217230318901;MYOD1:0.211328955085;CREB1:0.18011213865;PAX8:0.169293828596;FOX{F1,F2,J1}:0.159103352635;PAX2:0.158765506716;HOXA9_MEIS1:0.153521644243;PAX3,7:0.151395861902;ZNF423:0.150592099479;GTF2A1,2:0.136961998917;HSF1,2:0.118060717085;HLF:0.105661484174;SOX{8,9,10}:0.0867814745119;POU2F1..3:0.063941702434;LEF1_TCF7_TCF7L1,2:0.0523401162688;POU3F1..4:0.0514606776281;NKX6-1,2:0.0406164091583;EN1,2:0.0391986169529;ZNF384:0.030292662494;CUX2:0.0286196011096;BREu{core}:0.028155098335;FOXL1:0.0230669443994;MTF1:0.022526942366;PBX1:0.00427195997494;OCT4_SOX2{dimer}:-0.00106720468208;GZF1:-0.0091689532131;ONECUT1,2:-0.0098655800205;BACH2:-0.0106397640603;RFX2..5_RFXANK_RFXAP:-0.0213647167533;NFE2:-0.0257117233998;GFI1B:-0.028185744269;CDX1,2,4:-0.0328355403449;T:-0.036341309207;HNF1A:-0.0411190480721;HOX{A5,B5}:-0.0415100812151;ZBTB16:-0.0553816064921;PDX1:-0.0626477512682;PITX1..3:-0.0668511558713;LHX3,4:-0.0928654404592;ATF5_CREB3:-0.118105605029;NFE2L2:-0.123252028748;CDC5L:-0.123552930073;CEBPA,B_DDIT3:-0.130918348727;FOS_FOS{B,L1}_JUN{B,D}:-0.135213028528;LMO2:-0.137087833807;HAND1,2:-0.147840635885;RORA:-0.173355874028;ZBTB6:-0.175943146638;TLX1..3_NFIC{dimer}:-0.177787592942;HBP1_HMGB_SSRP1_UBTF:-0.197692426712;HOX{A4,D4}:-0.198085186395;AIRE:-0.199003081949;TBP:-0.21325204569;NR3C1:-0.21571539977;MEF2{A,B,C,D}:-0.216380165317;PRRX1,2:-0.21675168697;DBP:-0.220301356153;EBF1:-0.224301558997;AHR_ARNT_ARNT2:-0.238361604249;GLI1..3:-0.24049273376;FOX{I1,J2}:-0.241193935338;RBPJ:-0.252238836029;ELF1,2,4:-0.253948603651;ATF4:-0.262622783289;BPTF:-0.284545217424;ESR1:-0.297948371135;RXRA_VDR{dimer}:-0.29925429723;STAT5{A,B}:-0.300466308723;NR1H4:-0.323274318393;STAT2,4,6:-0.328548052308;HMGA1,2:-0.330411128047;HIC1:-0.333775322085;KLF4:-0.344790789618;NFKB1_REL_RELA:-0.34530475251;PAX6:-0.345973966543;TFCP2:-0.356765332881;IRF1,2:-0.366033269522;FOSL2:-0.373490094165;SREBF1,2:-0.416061200755;EVI1:-0.416465616443;NKX2-2,8:-0.417831966219;MAFB:-0.423383399327;POU5F1:-0.432657567275;GTF2I:-0.447873645191;ALX1:-0.449186454345;CRX:-0.453188456033;TFAP2B:-0.45426743045;NANOG:-0.492911016065;ATF6:-0.496425042191;TFAP2{A,C}:-0.503294206483;NFIL3:-0.505562358075;SPIB:-0.527699440577;ADNP_IRX_SIX_ZHX:-0.532051711049;PAX4:-0.532716091198;ZFP161:-0.532939375103;TOPORS:-0.539826399698;FOXP1:-0.540487915126;RFX1:-0.547994545219;ZIC1..3:-0.572254351813;FOXP3:-0.582719523694;GATA6:-0.586247749802;JUN:-0.596715964983;REST:-0.625099480933;TFAP4:-0.629078680587;SOX2:-0.635763860941;SPI1:-0.657503578337;RUNX1..3:-0.659190899727;AR:-0.668275676277;MTE{core}:-0.672176513714;SP1:-0.67902173085;GATA4:-0.679363979277;ZNF238:-0.701805652999;SOX5:-0.703635740595;NKX2-1,4:-0.71166204239;POU6F1:-0.712114863124;SRF:-0.713533613459;NHLH1,2:-0.714732773131;SOX17:-0.71649009325;ETS1,2:-0.757663525027;MED-1{core}:-0.763329525372;NKX2-3_NKX2-5:-0.772452152221;XCPE1{core}:-0.790100750975;EGR1..3:-0.797428948932;NFATC1..3:-0.816318892712;TAL1_TCF{3,4,12}:-0.822806656297;FOXA2:-0.86314736494;STAT1,3:-0.914576274987;RREB1:-0.915212141624;MAZ:-0.926099845247;DMAP1_NCOR{1,2}_SMARC:-0.940622499065;FOXO1,3,4:-0.956362745981;ATF2:-0.996103673745;FOX{D1,D2}:-1.01953179509;HMX1:-1.08913157666;NFIX:-1.10739904696;XBP1:-1.13413760699;SMAD1..7,9:-1.13897605366;MZF1:-1.14911943214;MYFfamily:-1.15486888765;PATZ1:-1.18976847146;TGIF1:-1.20973153118;PRDM1:-1.26997636178;TLX2:-1.42096107605;SPZ1:-1.52122848801;NANOG{mouse}:-1.54264331862 | |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.81113412958;E2F1..5:1.55887653721;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.47173407883;ESRRA:1.45948202654;HES1:1.42465093997;ELK1,4_GABP{A,B1}:1.33940202614;FOXM1:1.23570658031;PPARG:1.21525038421;NR5A1,2:1.20291547788;NKX3-1:1.14199373793;YY1:1.11206075823;HIF1A:1.07259181867;FOXQ1:0.954409189296;NRF1:0.919731387698;FOXD3:0.913945025778;PAX1,9:0.895583898103;bHLH_family:0.856675919542;FOXN1:0.849993754164;ZNF143:0.812941503169;NFY{A,B,C}:0.797567402886;NKX3-2:0.75033033735;NR6A1:0.740540017465;MYB:0.734561090004;PAX5:0.66716543326;EP300:0.660351899876;HNF4A_NR2F1,2:0.657038387387;HOX{A6,A7,B6,B7}:0.630400687809;ARID5B:0.603734237799;GCM1,2:0.58328398655;SNAI1..3:0.561726623193;POU1F1:0.533437110113;TEAD1:0.494608671317;ZEB1:0.483987523372;RXR{A,B,G}:0.469254004949;TEF:0.449300045366;UFEwm:0.416767861943;TBX4,5:0.399100345744;IKZF2:0.376031041741;ALX4:0.375567018453;IKZF1:0.355395855371;TP53:0.310618185392;TFDP1:0.293259076887;ZNF148:0.291388482649;VSX1,2:0.265887391445;GFI1:0.262221880856;IRF7:0.251869745759;NFE2L1:0.2373357053;MYBL2:0.217230318901;MYOD1:0.211328955085;CREB1:0.18011213865;PAX8:0.169293828596;FOX{F1,F2,J1}:0.159103352635;PAX2:0.158765506716;HOXA9_MEIS1:0.153521644243;PAX3,7:0.151395861902;ZNF423:0.150592099479;GTF2A1,2:0.136961998917;HSF1,2:0.118060717085;HLF:0.105661484174;SOX{8,9,10}:0.0867814745119;POU2F1..3:0.063941702434;LEF1_TCF7_TCF7L1,2:0.0523401162688;POU3F1..4:0.0514606776281;NKX6-1,2:0.0406164091583;EN1,2:0.0391986169529;ZNF384:0.030292662494;CUX2:0.0286196011096;BREu{core}:0.028155098335;FOXL1:0.0230669443994;MTF1:0.022526942366;PBX1:0.00427195997494;OCT4_SOX2{dimer}:-0.00106720468208;GZF1:-0.0091689532131;ONECUT1,2:-0.0098655800205;BACH2:-0.0106397640603;RFX2..5_RFXANK_RFXAP:-0.0213647167533;NFE2:-0.0257117233998;GFI1B:-0.028185744269;CDX1,2,4:-0.0328355403449;T:-0.036341309207;HNF1A:-0.0411190480721;HOX{A5,B5}:-0.0415100812151;ZBTB16:-0.0553816064921;PDX1:-0.0626477512682;PITX1..3:-0.0668511558713;LHX3,4:-0.0928654404592;ATF5_CREB3:-0.118105605029;NFE2L2:-0.123252028748;CDC5L:-0.123552930073;CEBPA,B_DDIT3:-0.130918348727;FOS_FOS{B,L1}_JUN{B,D}:-0.135213028528;LMO2:-0.137087833807;HAND1,2:-0.147840635885;RORA:-0.173355874028;ZBTB6:-0.175943146638;TLX1..3_NFIC{dimer}:-0.177787592942;HBP1_HMGB_SSRP1_UBTF:-0.197692426712;HOX{A4,D4}:-0.198085186395;AIRE:-0.199003081949;TBP:-0.21325204569;NR3C1:-0.21571539977;MEF2{A,B,C,D}:-0.216380165317;PRRX1,2:-0.21675168697;DBP:-0.220301356153;EBF1:-0.224301558997;AHR_ARNT_ARNT2:-0.238361604249;GLI1..3:-0.24049273376;FOX{I1,J2}:-0.241193935338;RBPJ:-0.252238836029;ELF1,2,4:-0.253948603651;ATF4:-0.262622783289;BPTF:-0.284545217424;ESR1:-0.297948371135;RXRA_VDR{dimer}:-0.29925429723;STAT5{A,B}:-0.300466308723;NR1H4:-0.323274318393;STAT2,4,6:-0.328548052308;HMGA1,2:-0.330411128047;HIC1:-0.333775322085;KLF4:-0.344790789618;NFKB1_REL_RELA:-0.34530475251;PAX6:-0.345973966543;TFCP2:-0.356765332881;IRF1,2:-0.366033269522;FOSL2:-0.373490094165;SREBF1,2:-0.416061200755;EVI1:-0.416465616443;NKX2-2,8:-0.417831966219;MAFB:-0.423383399327;POU5F1:-0.432657567275;GTF2I:-0.447873645191;ALX1:-0.449186454345;CRX:-0.453188456033;TFAP2B:-0.45426743045;NANOG:-0.492911016065;ATF6:-0.496425042191;TFAP2{A,C}:-0.503294206483;NFIL3:-0.505562358075;SPIB:-0.527699440577;ADNP_IRX_SIX_ZHX:-0.532051711049;PAX4:-0.532716091198;ZFP161:-0.532939375103;TOPORS:-0.539826399698;FOXP1:-0.540487915126;RFX1:-0.547994545219;ZIC1..3:-0.572254351813;FOXP3:-0.582719523694;GATA6:-0.586247749802;JUN:-0.596715964983;REST:-0.625099480933;TFAP4:-0.629078680587;SOX2:-0.635763860941;SPI1:-0.657503578337;RUNX1..3:-0.659190899727;AR:-0.668275676277;MTE{core}:-0.672176513714;SP1:-0.67902173085;GATA4:-0.679363979277;ZNF238:-0.701805652999;SOX5:-0.703635740595;NKX2-1,4:-0.71166204239;POU6F1:-0.712114863124;SRF:-0.713533613459;NHLH1,2:-0.714732773131;SOX17:-0.71649009325;ETS1,2:-0.757663525027;MED-1{core}:-0.763329525372;NKX2-3_NKX2-5:-0.772452152221;XCPE1{core}:-0.790100750975;EGR1..3:-0.797428948932;NFATC1..3:-0.816318892712;TAL1_TCF{3,4,12}:-0.822806656297;FOXA2:-0.86314736494;STAT1,3:-0.914576274987;RREB1:-0.915212141624;MAZ:-0.926099845247;DMAP1_NCOR{1,2}_SMARC:-0.940622499065;FOXO1,3,4:-0.956362745981;ATF2:-0.996103673745;FOX{D1,D2}:-1.01953179509;HMX1:-1.08913157666;NFIX:-1.10739904696;XBP1:-1.13413760699;SMAD1..7,9:-1.13897605366;MZF1:-1.14911943214;MYFfamily:-1.15486888765;PATZ1:-1.18976847146;TGIF1:-1.20973153118;PRDM1:-1.26997636178;TLX2:-1.42096107605;SPZ1:-1.52122848801;NANOG{mouse}:-1.54264331862 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11898-125E8;search_select_hide=table117:FF:11898-125E8 | |||
}} | }} |
Latest revision as of 18:27, 4 June 2020
Name: | Hep-2 cells mock treated, biol_rep1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13479 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13479
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13479
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.127 |
10 | 10 | 0.093 |
100 | 100 | 0.0237 |
101 | 101 | 0.194 |
102 | 102 | 0.904 |
103 | 103 | 0.835 |
104 | 104 | 0.887 |
105 | 105 | 0.183 |
106 | 106 | 0.0131 |
107 | 107 | 0.151 |
108 | 108 | 0.729 |
109 | 109 | 0.00141 |
11 | 11 | 0.995 |
110 | 110 | 0.291 |
111 | 111 | 0.713 |
112 | 112 | 0.349 |
113 | 113 | 0.00143 |
114 | 114 | 0.873 |
115 | 115 | 0.756 |
116 | 116 | 0.244 |
117 | 117 | 0.145 |
118 | 118 | 0.203 |
119 | 119 | 0.749 |
12 | 12 | 0.925 |
120 | 120 | 0.0518 |
121 | 121 | 0.506 |
122 | 122 | 0.176 |
123 | 123 | 0.206 |
124 | 124 | 0.687 |
125 | 125 | 0.901 |
126 | 126 | 0.837 |
127 | 127 | 0.274 |
128 | 128 | 1.72143e-4 |
129 | 129 | 0.357 |
13 | 13 | 1.03398e-4 |
130 | 130 | 0.434 |
131 | 131 | 0.4 |
132 | 132 | 0.5 |
133 | 133 | 0.181 |
134 | 134 | 0.949 |
135 | 135 | 0.0457 |
136 | 136 | 0.00347 |
137 | 137 | 0.223 |
138 | 138 | 0.711 |
139 | 139 | 0.0355 |
14 | 14 | 0.374 |
140 | 140 | 0.206 |
141 | 141 | 0.526 |
142 | 142 | 0.612 |
143 | 143 | 0.219 |
144 | 144 | 0.381 |
145 | 145 | 0.231 |
146 | 146 | 0.671 |
147 | 147 | 0.793 |
148 | 148 | 0.574 |
149 | 149 | 0.555 |
15 | 15 | 0.95 |
150 | 150 | 0.637 |
151 | 151 | 0.552 |
152 | 152 | 0.683 |
153 | 153 | 0.562 |
154 | 154 | 0.404 |
155 | 155 | 0.652 |
156 | 156 | 0.0311 |
157 | 157 | 0.117 |
158 | 158 | 0.114 |
159 | 159 | 0.218 |
16 | 16 | 0.937 |
160 | 160 | 0.418 |
161 | 161 | 0.629 |
162 | 162 | 0.851 |
163 | 163 | 0.294 |
164 | 164 | 0.0154 |
165 | 165 | 0.989 |
166 | 166 | 0.0899 |
167 | 167 | 0.237 |
168 | 168 | 0.255 |
169 | 169 | 0.29 |
17 | 17 | 0.847 |
18 | 18 | 0.249 |
19 | 19 | 0.853 |
2 | 2 | 0.497 |
20 | 20 | 0.105 |
21 | 21 | 0.418 |
22 | 22 | 0.886 |
23 | 23 | 0.00168 |
24 | 24 | 0.764 |
25 | 25 | 0.366 |
26 | 26 | 0.994 |
27 | 27 | 0.686 |
28 | 28 | 0.758 |
29 | 29 | 0.0268 |
3 | 3 | 0.61 |
30 | 30 | 0.44 |
31 | 31 | 0.521 |
32 | 32 | 0.133 |
33 | 33 | 0.157 |
34 | 34 | 0.194 |
35 | 35 | 0.776 |
36 | 36 | 0.172 |
37 | 37 | 0.329 |
38 | 38 | 0.942 |
39 | 39 | 0.97 |
4 | 4 | 0.201 |
40 | 40 | 0.018 |
41 | 41 | 0.107 |
42 | 42 | 0.954 |
43 | 43 | 0.418 |
44 | 44 | 0.0655 |
45 | 45 | 0.206 |
46 | 46 | 0.558 |
47 | 47 | 0.384 |
48 | 48 | 0.455 |
49 | 49 | 0.236 |
5 | 5 | 0.217 |
50 | 50 | 0.856 |
51 | 51 | 0.63 |
52 | 52 | 0.27 |
53 | 53 | 0.0855 |
54 | 54 | 0.484 |
55 | 55 | 0.0469 |
56 | 56 | 0.902 |
57 | 57 | 0.528 |
58 | 58 | 0.89 |
59 | 59 | 0.875 |
6 | 6 | 0.704 |
60 | 60 | 0.371 |
61 | 61 | 0.0454 |
62 | 62 | 0.903 |
63 | 63 | 0.548 |
64 | 64 | 0.778 |
65 | 65 | 0.407 |
66 | 66 | 0.529 |
67 | 67 | 0.773 |
68 | 68 | 0.511 |
69 | 69 | 0.96 |
7 | 7 | 0.0366 |
70 | 70 | 0.296 |
71 | 71 | 0.0533 |
72 | 72 | 0.817 |
73 | 73 | 0.318 |
74 | 74 | 0.0615 |
75 | 75 | 0.104 |
76 | 76 | 0.21 |
77 | 77 | 0.558 |
78 | 78 | 0.186 |
79 | 79 | 0.991 |
8 | 8 | 0.13 |
80 | 80 | 0.029 |
81 | 81 | 0.233 |
82 | 82 | 0.115 |
83 | 83 | 0.64 |
84 | 84 | 0.502 |
85 | 85 | 0.0189 |
86 | 86 | 0.9 |
87 | 87 | 0.00623 |
88 | 88 | 0.817 |
89 | 89 | 0.644 |
9 | 9 | 0.559 |
90 | 90 | 0.0363 |
91 | 91 | 0.0104 |
92 | 92 | 0.0728 |
93 | 93 | 0.29 |
94 | 94 | 0.419 |
95 | 95 | 0.00191 |
96 | 96 | 0.411 |
97 | 97 | 0.879 |
98 | 98 | 0.848 |
99 | 99 | 0.374 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13479
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0104978 (HEp-2 cell sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011132 (human Hep-2 cells mock treated sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)