FF:11896-125E6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005842 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548 | |accession_numbers=CAGE;DRX007790;DRR008662;DRZ000087;DRZ001472;DRZ011437;DRZ012822 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000632,FF:0104978,FF:0000639,FF:0100297,FF:0101120,FF:0011134 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.56!43.09!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.52!32.32!ELF3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.51!31.55!LRRFIP1;;chr6:10415484..10415508,-!p3@TFAP2A!1.44!26.55!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.78!PITX1;;chr6:126240380..126240430,+!p2@NCOA7!1.37!56.56!NCOA7;;chr12:52445218..52445237,+!p1@NR4A1!1.35!262.78!NR4A1;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.01!TFAP2A;;chr5:134369879..134369898,-!p2@PITX1!1.31!19.24!PITX1;;chr6:126240442..126240459,+!p4@NCOA7!1.28!22.70!NCOA7;;chr1:201979703..201979721,+!p2@ELF3!1.20!15.01!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.19!23.85!FOXQ1;;chr6:126240463..126240489,+!p6@NCOA7!1.18!15.77!NCOA7;;chr12:54380036..54380091,+!p4@HOXC10!1.07!10.77!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!1.06!10.39!HOXC10;;chr22:19748231..19748317,+!p1@TBX1!1.06!10.39!TBX1;;chr5:170736243..170736279,+!p1@TLX3!1.06!10.39!TLX3;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.24!HOXB7;;chr9:100615499..100615519,+!p1@FOXE1!1.03!9.62!FOXE1;;chr1:44513995..44514031,+!p1@KLF17!1.03!9.62!KLF17;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.23!ONECUT2;;chr18:55102628..55102646,+!p2@ONECUT2!0.98!8.46!ONECUT2;;chrX:131624056..131624069,-!p2@MBNL3!0.96!11.16!MBNL3;;chr6:126240356..126240379,+!p7@NCOA7!0.96!10.00!NCOA7;;chr7:101917447..101917479,+!p4@CUX1!0.96!8.08!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.94!7.69!CUX1;;chr12:72056800..72056834,+!p1@THAP2!0.92!10.00!THAP2;;chr17:7492684..7492778,-!p2@SOX15!0.91!15.39!SOX15;;chr10:104155659..104155676,+!p4@NFKB2!0.90!8.85!NFKB2;;chr6:10412392..10412409,-!p4@TFAP2A!0.90!8.08!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.88!73.87!KLF5;;chr6:10412576..10412599,-!p5@TFAP2A!0.88!6.54!TFAP2A;;chr17:17726907..17726958,-!p2@SREBF1!0.87!41.94!SREBF1;;chr3:69915385..69915438,+!p3@MITF!0.85!6.16!MITF;;chr9:102584262..102584276,+!p1@NR4A3!0.83!13.47!NR4A3;;chr6:1389789..1389821,+!p1@FOXF2!0.83!8.08!FOXF2;;chr11:34663913..34663945,+!p6@EHF!0.83!5.77!EHF;;chr5:321810..321877,+!p1@AHRR!0.82!18.85!AHRR;;chr20:6748325..6748352,+!p1@BMP2!0.81!8.08!BMP2;;chr21:38071430..38071456,+!p1@SIM2!0.81!5.39!SIM2;;chr7:101917407..101917443,+!p3@CUX1!0.81!5.39!CUX1;;chr7:27224842..27224872,-!p1@HOXA11!0.81!5.39!HOXA11;;chr12:54379029..54379057,+!p2@HOXC10!0.81!5.39!HOXC10;;chrX:70503529..70503549,+!p2@NONO!0.80!30.78!NONO;;chr1:8934931..8934947,-!p4@ENO1!0.80!18.85!ENO1;;chr12:72056773..72056796,+!p3@THAP2!0.79!6.93!THAP2;;chr9:102584159..102584174,+!p2@NR4A3!0.78!9.62!NR4A3;;chr8:55370487..55370503,+!p1@SOX17!0.78!5.00!SOX17;;chr10:28034739..28034756,-!p1@MKX!0.78!5.00!MKX;;chr12:54378923..54378966,+!p1@HOXC10!0.78!5.00!HOXC10;;chr1:151804244..151804310,-!p1@RORC!0.78!5.00!RORC;;chr17:46682321..46682362,-!p1@HOXB6!0.78!5.00!HOXB6;;chrX:131623044..131623089,-!p1@MBNL3!0.77!22.32!MBNL3;;chr16:29818199..29818216,+!p11@MAZ!0.77!8.46!MAZ;;chr1:45805872..45805900,+!p2@TOE1!0.76!12.31!TOE1;;chr1:8938709..8938720,-!p3@ENO1!0.75!247.39!ENO1;;chr20:42295745..42295765,+!p1@MYBL2!0.75!84.64!MYBL2;;chr17:8027418..8027432,-!p1@HES7!0.75!4.62!HES7;;chr12:3068544..3068597,+!p1@TEAD4!0.74!30.01!TEAD4;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.17!TCF19;;chr12:7079780..7079791,-!p2@PHB2!0.72!24.62!PHB2;;chrX:107019163..107019179,-!p7@TSC22D3!0.72!5.00!TSC22D3;;chr12:54380112..54380126,+!p5@HOXC10!0.72!4.23!HOXC10;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.24!NR4A2;;chr1:935398..935465,-!p2@HES4!0.71!9.23!HES4;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.55!MYBL2;;chr10:51572408..51572454,+!p3@NCOA4!0.70!26.16!NCOA4;;chr3:12330560..12330579,+!p1@PPARG!0.69!4.62!PPARG;;chr2:45236540..45236577,-!p1@SIX2!0.69!3.85!SIX2;;chr3:128207349..128207386,-!p3@GATA2!0.69!3.85!GATA2;;chr3:69915369..69915381,+!p4@MITF!0.69!3.85!MITF;;chr9:126774018..126774055,+!p1@LHX2!0.69!3.85!LHX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.69!3.85!SEBOX;;chr3:128206762..128206781,-!p2@GATA2!0.66!25.78!GATA2;;chr2:172967621..172967637,-!p1@DLX2!0.66!10.77!DLX2;;chr17:41277372..41277418,-!p1@BRCA1!0.65!14.24!BRCA1;;chr6:10420285..10420304,-!p18@TFAP2A!0.65!3.46!TFAP2A;;chr11:34664014..34664045,+!p4@EHF!0.65!3.46!EHF;;chr12:54379477..54379498,+!p5@HOXC5!0.65!3.46!HOXC5;;chr12:2986275..2986363,-!p1@FOXM1!0.64!39.24!FOXM1;;chr22:42229210..42229229,+!p3@SREBF2!0.64!8.85!SREBF2;;chr1:8939265..8939367,-!p5@ENO1!0.64!7.69!ENO1;;chr2:46524897..46524911,+!p2@EPAS1!0.63!10.39!EPAS1;;chr10:35484053..35484076,+!p1@CREM!0.62!8.85!CREM;;chrX:107018969..107019024,-!p6@TSC22D3!0.62!4.62!TSC22D3;;chrX:131622958..131622978,-!p3@MBNL3!0.62!4.23!MBNL3;;chr16:29818160..29818188,+!p6@MAZ!0.61!16.93!MAZ;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.24!ZBTB38;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.08!HOXB7;;chr17:46806067..46806097,-!p1@HOXB13!0.61!3.08!HOXB13;;chr17:7493405..7493419,-!p1@SOX15!0.61!3.08!SOX15;;chrX:131623026..131623039,-!p5@MBNL3!0.61!3.08!MBNL3;;chr12:52448420..52448460,+!p5@NR4A1!0.61!3.08!NR4A1;;chr12:54332608..54332636,+!p1@HOXC13!0.61!3.08!HOXC13;;chr12:54379136..54379150,+!p4@HOXC5!0.61!3.08!HOXC5;;chr5:170736216..170736238,+!p2@TLX3!0.61!3.08!TLX3;;chr8:145669791..145669834,-!p1@TONSL!0.60!10.00!TONSL;;chr18:45457909..45457939,-!p8@SMAD2!0.60!3.85!SMAD2;;chr12:80084737..80084763,-!p3@PAWR!0.59!12.70!PAWR;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.24!ETV4;;chr6:20402102..20402152,+!p1@E2F3!0.58!13.85!E2F3;;chr11:3400340..3400422,-!p1@ZNF195!0.57!53.48!ZNF195;;chr1:161736038..161736056,+!p4@ATF6!0.57!7.31!ATF6;;chr17:46688334..46688385,-!p1@HOXB7!0.57!4.23!HOXB7;;chr20:51588873..51588953,+!p1@TSHZ2!0.57!3.85!TSHZ2;;chrX:131624020..131624048,-!p9@MBNL3!0.57!3.46!MBNL3;;chr15:67418119..67418162,+!p5@SMAD3!0.57!3.08!SMAD3;;chr12:72056749..72056767,+!p6@THAP2!0.57!3.08!THAP2;;chr12:52448213..52448262,+!p6@NR4A1!0.57!2.69!NR4A1;;chr12:54393880..54393962,+!p1@HOXC9!0.57!2.69!HOXC9;;chr19:54041669..54041697,+!p2@ZNF331!0.57!2.69!ZNF331;;chr6:126240490..126240501,+!p11@NCOA7!0.57!2.69!NCOA7;;chr1:164528410..164528428,+!p1@PBX1!0.56!24.62!PBX1;;chr20:32274179..32274213,-!p1@E2F1!0.56!21.55!E2F1;;chrX:131623982..131624011,-!p6@MBNL3!0.56!4.23!MBNL3;;chr15:67418047..67418093,+!p4@SMAD3!0.55!3.46!SMAD3;;chr12:115121962..115121987,-!p1@TBX3!0.52!25.01!TBX3;;chr20:32274150..32274166,-!p2@E2F1!0.52!5.00!E2F1;;chr15:90294062..90294079,-!p2@MESP1!0.52!2.31!MESP1;;chr17:36105074..36105086,-!p2@HNF1B!0.52!2.31!HNF1B;;chr17:46806098..46806118,-!p3@HOXB13!0.52!2.31!HOXB13;;chr19:12348371..12348386,-!p5@ZNF44!0.52!2.31!ZNF44;;chr19:3574157..3574180,+!p4@HMG20B!0.52!2.31!HMG20B;;chr5:134369973..134369984,-!p3@PITX1!0.52!2.31!PITX1;;chr6:10412477..10412490,-!p10@TFAP2A!0.52!2.31!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!0.52!2.31!TFAP2A;;chr12:19592405..19592492,+!p2@AEBP2!0.51!25.01!AEBP2;;chr10:35415951..35415975,+!p8@CREM!0.51!3.46!CREM;;chr3:141087339..141087387,+!p2@ZBTB38!0.50!28.86!ZBTB38;;chr2:75937794..75937867,-!p2@GCFC2!0.50!5.77!GCFC2;;chr1:8938736..8938756,-!p1@ENO1!0.49!3076.05!ENO1;;chr11:47279504..47279563,+!p1@NR1H3!0.49!5.77!NR1H3;;chr8:67525443..67525459,-!p2@MYBL1!0.49!3.46!MYBL1;;chr6:43138999..43139017,+!p2@SRF!0.48!15.77!SRF;;chr17:47492252..47492265,-!p2@PHB!0.48!10.77!PHB;;chr18:47814010..47814021,-!p3@CXXC1!0.48!3.85!CXXC1;;chr2:85981222..85981259,+!p2@ATOH8!0.48!3.85!ATOH8;;chr1:8926441..8926473,-!p10@ENO1!0.48!3.46!ENO1;;chr1:23885981..23886002,-!p1@ID3!0.47!473.24!ID3;;chr5:34929677..34929789,+!p1@DNAJC21!0.47!78.10!DNAJC21;;chr1:23857698..23857733,-!p1@E2F2!0.47!4.23!E2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.47!3.85!TWIST2;;chr17:17726892..17726903,-!p6@SREBF1!0.47!2.31!SREBF1;;chr17:48045917..48045977,+!p1@DLX4!0.47!1.92!DLX4;;chr17:48072574..48072597,-!p1@DLX3!0.47!1.92!DLX3;;chr2:63277948..63277974,+!p1@OTX1!0.47!1.92!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.47!1.92!FOXL2;;chr10:104155680..104155687,+!p6@NFKB2!0.47!1.92!NFKB2;;chr12:3068634..3068656,+!p5@TEAD4!0.47!1.92!TEAD4;;chr12:51158359..51158395,+!p4@ATF1!0.47!1.92!ATF1;;chr12:54366975..54367001,+!p1@HOXC11!0.47!1.92!HOXC11;;chr12:54394416..54394467,+!p5@HOXC9!0.47!1.92!HOXC9;;chr14:37051798..37051831,-!p1@NKX2-8!0.47!1.92!NKX2-8;;chr5:134369643..134369675,-!p4@PITX1!0.47!1.92!PITX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.47!1.92!TFAP2A;;chr6:126240542..126240553,+!p14@NCOA7!0.47!1.92!NCOA7;;chr6:1389989..1390019,+!p2@FOXF2!0.47!1.92!FOXF2;;chr7:27239740..27239759,-!p2@HOXA13!0.47!1.92!HOXA13;;chr7:73038839..73038862,-!p1@MLXIPL!0.47!1.92!MLXIPL;;chr9:102584278..102584285,+!p5@NR4A3!0.47!1.92!NR4A3;;chr14:55493763..55493824,-!p1@WDHD1!0.46!19.24!WDHD1;;chr10:104155480..104155534,+!p2@NFKB2!0.46!16.54!NFKB2;;chr18:45457423..45457468,-!p5@SMAD2!0.46!9.23!SMAD2;;chr1:23857325..23857416,-!p2@E2F2!0.46!2.31!E2F2;;chr6:20402070..20402082,+!p5@E2F3!0.46!2.31!E2F3;;chr16:29817789..29817838,+!p2@MAZ!0.44!33.86!MAZ;;chr2:178128149..178128198,-!p2@NFE2L2!0.44!12.70!NFE2L2;;chr1:45805813..45805859,+!p1@TOE1!0.44!10.77!TOE1;;chr12:3069037..3069119,+!p2@TEAD4!0.44!8.08!TEAD4;;chr2:239756671..239756732,+!p1@TWIST2!0.44!7.31!TWIST2;;chr8:67525473..67525518,-!p1@MYBL1!0.44!5.00!MYBL1;;chr1:249132462..249132481,+!p6@ZNF672!0.44!3.46!ZNF672;;chr1:212782094..212782109,+!p1@ATF3!0.43!66.56!ATF3;;chr6:144329384..144329405,-!p1@PLAGL1!0.43!27.70!PLAGL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.43!21.16!PPP1R13L;;chr14:62213827..62213853,+!p6@HIF1A!0.43!2.69!HIF1A;;chr9:99180662..99180690,-!p2@ZNF367!0.43!2.69!ZNF367;;chr2:74375081..74375092,-!p2@BOLA3!0.42!4.23!BOLA3;;chr3:24536253..24536328,-!p1@THRB!0.42!3.85!THRB;;chr4:87857474..87857489,+!p7@AFF1!0.42!3.46!AFF1;;chrX:70504244..70504278,+!p4@NONO!0.42!3.08!NONO;;chr16:54320101..54320125,-!p4@IRX3!0.42!2.69!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.42!2.69!IRX5;;chr16:54320617..54320643,-!p3@IRX3!0.42!2.31!IRX3;;chr7:1577111..1577132,+!p4@MAFK!0.42!1.92!MAFK;;chr12:2986206..2986258,-!p2@FOXM1!0.41!13.47!FOXM1;;chr16:1429627..1429662,-!p2@UNKL!0.41!6.16!UNKL;;chr1:8923998..8924033,-!p8@ENO1!0.41!3.46!ENO1;;chr11:3400442..3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| |expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.56!43.09!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.52!32.32!ELF3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.51!31.55!LRRFIP1;;chr6:10415484..10415508,-!p3@TFAP2A!1.44!26.55!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.78!PITX1;;chr6:126240380..126240430,+!p2@NCOA7!1.37!56.56!NCOA7;;chr12:52445218..52445237,+!p1@NR4A1!1.35!262.78!NR4A1;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.01!TFAP2A;;chr5:134369879..134369898,-!p2@PITX1!1.31!19.24!PITX1;;chr6:126240442..126240459,+!p4@NCOA7!1.28!22.70!NCOA7;;chr1:201979703..201979721,+!p2@ELF3!1.20!15.01!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.19!23.85!FOXQ1;;chr6:126240463..126240489,+!p6@NCOA7!1.18!15.77!NCOA7;;chr12:54380036..54380091,+!p4@HOXC10!1.07!10.77!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!1.06!10.39!HOXC10;;chr22:19748231..19748317,+!p1@TBX1!1.06!10.39!TBX1;;chr5:170736243..170736279,+!p1@TLX3!1.06!10.39!TLX3;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.24!HOXB7;;chr9:100615499..100615519,+!p1@FOXE1!1.03!9.62!FOXE1;;chr1:44513995..44514031,+!p1@KLF17!1.03!9.62!KLF17;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.23!ONECUT2;;chr18:55102628..55102646,+!p2@ONECUT2!0.98!8.46!ONECUT2;;chrX:131624056..131624069,-!p2@MBNL3!0.96!11.16!MBNL3;;chr6:126240356..126240379,+!p7@NCOA7!0.96!10.00!NCOA7;;chr7:101917447..101917479,+!p4@CUX1!0.96!8.08!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.94!7.69!CUX1;;chr12:72056800..72056834,+!p1@THAP2!0.92!10.00!THAP2;;chr17:7492684..7492778,-!p2@SOX15!0.91!15.39!SOX15;;chr10:104155659..104155676,+!p4@NFKB2!0.90!8.85!NFKB2;;chr6:10412392..10412409,-!p4@TFAP2A!0.90!8.08!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.88!73.87!KLF5;;chr6:10412576..10412599,-!p5@TFAP2A!0.88!6.54!TFAP2A;;chr17:17726907..17726958,-!p2@SREBF1!0.87!41.94!SREBF1;;chr3:69915385..69915438,+!p3@MITF!0.85!6.16!MITF;;chr9:102584262..102584276,+!p1@NR4A3!0.83!13.47!NR4A3;;chr6:1389789..1389821,+!p1@FOXF2!0.83!8.08!FOXF2;;chr11:34663913..34663945,+!p6@EHF!0.83!5.77!EHF;;chr5:321810..321877,+!p1@AHRR!0.82!18.85!AHRR;;chr20:6748325..6748352,+!p1@BMP2!0.81!8.08!BMP2;;chr21:38071430..38071456,+!p1@SIM2!0.81!5.39!SIM2;;chr7:101917407..101917443,+!p3@CUX1!0.81!5.39!CUX1;;chr7:27224842..27224872,-!p1@HOXA11!0.81!5.39!HOXA11;;chr12:54379029..54379057,+!p2@HOXC10!0.81!5.39!HOXC10;;chrX:70503529..70503549,+!p2@NONO!0.80!30.78!NONO;;chr1:8934931..8934947,-!p4@ENO1!0.80!18.85!ENO1;;chr12:72056773..72056796,+!p3@THAP2!0.79!6.93!THAP2;;chr9:102584159..102584174,+!p2@NR4A3!0.78!9.62!NR4A3;;chr8:55370487..55370503,+!p1@SOX17!0.78!5.00!SOX17;;chr10:28034739..28034756,-!p1@MKX!0.78!5.00!MKX;;chr12:54378923..54378966,+!p1@HOXC10!0.78!5.00!HOXC10;;chr1:151804244..151804310,-!p1@RORC!0.78!5.00!RORC;;chr17:46682321..46682362,-!p1@HOXB6!0.78!5.00!HOXB6;;chrX:131623044..131623089,-!p1@MBNL3!0.77!22.32!MBNL3;;chr16:29818199..29818216,+!p11@MAZ!0.77!8.46!MAZ;;chr1:45805872..45805900,+!p2@TOE1!0.76!12.31!TOE1;;chr1:8938709..8938720,-!p3@ENO1!0.75!247.39!ENO1;;chr20:42295745..42295765,+!p1@MYBL2!0.75!84.64!MYBL2;;chr17:8027418..8027432,-!p1@HES7!0.75!4.62!HES7;;chr12:3068544..3068597,+!p1@TEAD4!0.74!30.01!TEAD4;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.17!TCF19;;chr12:7079780..7079791,-!p2@PHB2!0.72!24.62!PHB2;;chrX:107019163..107019179,-!p7@TSC22D3!0.72!5.00!TSC22D3;;chr12:54380112..54380126,+!p5@HOXC10!0.72!4.23!HOXC10;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.24!NR4A2;;chr1:935398..935465,-!p2@HES4!0.71!9.23!HES4;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.55!MYBL2;;chr10:51572408..51572454,+!p3@NCOA4!0.70!26.16!NCOA4;;chr3:12330560..12330579,+!p1@PPARG!0.69!4.62!PPARG;;chr2:45236540..45236577,-!p1@SIX2!0.69!3.85!SIX2;;chr3:128207349..128207386,-!p3@GATA2!0.69!3.85!GATA2;;chr3:69915369..69915381,+!p4@MITF!0.69!3.85!MITF;;chr9:126774018..126774055,+!p1@LHX2!0.69!3.85!LHX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.69!3.85!SEBOX;;chr3:128206762..128206781,-!p2@GATA2!0.66!25.78!GATA2;;chr2:172967621..172967637,-!p1@DLX2!0.66!10.77!DLX2;;chr17:41277372..41277418,-!p1@BRCA1!0.65!14.24!BRCA1;;chr6:10420285..10420304,-!p18@TFAP2A!0.65!3.46!TFAP2A;;chr11:34664014..34664045,+!p4@EHF!0.65!3.46!EHF;;chr12:54379477..54379498,+!p5@HOXC5!0.65!3.46!HOXC5;;chr12:2986275..2986363,-!p1@FOXM1!0.64!39.24!FOXM1;;chr22:42229210..42229229,+!p3@SREBF2!0.64!8.85!SREBF2;;chr1:8939265..8939367,-!p5@ENO1!0.64!7.69!ENO1;;chr2:46524897..46524911,+!p2@EPAS1!0.63!10.39!EPAS1;;chr10:35484053..35484076,+!p1@CREM!0.62!8.85!CREM;;chrX:107018969..107019024,-!p6@TSC22D3!0.62!4.62!TSC22D3;;chrX:131622958..131622978,-!p3@MBNL3!0.62!4.23!MBNL3;;chr16:29818160..29818188,+!p6@MAZ!0.61!16.93!MAZ;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.24!ZBTB38;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.08!HOXB7;;chr17:46806067..46806097,-!p1@HOXB13!0.61!3.08!HOXB13;;chr17:7493405..7493419,-!p1@SOX15!0.61!3.08!SOX15;;chrX:131623026..131623039,-!p5@MBNL3!0.61!3.08!MBNL3;;chr12:52448420..52448460,+!p5@NR4A1!0.61!3.08!NR4A1;;chr12:54332608..54332636,+!p1@HOXC13!0.61!3.08!HOXC13;;chr12:54379136..54379150,+!p4@HOXC5!0.61!3.08!HOXC5;;chr5:170736216..170736238,+!p2@TLX3!0.61!3.08!TLX3;;chr8:145669791..145669834,-!p1@TONSL!0.60!10.00!TONSL;;chr18:45457909..45457939,-!p8@SMAD2!0.60!3.85!SMAD2;;chr12:80084737..80084763,-!p3@PAWR!0.59!12.70!PAWR;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.24!ETV4;;chr6:20402102..20402152,+!p1@E2F3!0.58!13.85!E2F3;;chr11:3400340..3400422,-!p1@ZNF195!0.57!53.48!ZNF195;;chr1:161736038..161736056,+!p4@ATF6!0.57!7.31!ATF6;;chr17:46688334..46688385,-!p1@HOXB7!0.57!4.23!HOXB7;;chr20:51588873..51588953,+!p1@TSHZ2!0.57!3.85!TSHZ2;;chrX:131624020..131624048,-!p9@MBNL3!0.57!3.46!MBNL3;;chr15:67418119..67418162,+!p5@SMAD3!0.57!3.08!SMAD3;;chr12:72056749..72056767,+!p6@THAP2!0.57!3.08!THAP2;;chr12:52448213..52448262,+!p6@NR4A1!0.57!2.69!NR4A1;;chr12:54393880..54393962,+!p1@HOXC9!0.57!2.69!HOXC9;;chr19:54041669..54041697,+!p2@ZNF331!0.57!2.69!ZNF331;;chr6:126240490..126240501,+!p11@NCOA7!0.57!2.69!NCOA7;;chr1:164528410..164528428,+!p1@PBX1!0.56!24.62!PBX1;;chr20:32274179..32274213,-!p1@E2F1!0.56!21.55!E2F1;;chrX:131623982..131624011,-!p6@MBNL3!0.56!4.23!MBNL3;;chr15:67418047..67418093,+!p4@SMAD3!0.55!3.46!SMAD3;;chr12:115121962..115121987,-!p1@TBX3!0.52!25.01!TBX3;;chr20:32274150..32274166,-!p2@E2F1!0.52!5.00!E2F1;;chr15:90294062..90294079,-!p2@MESP1!0.52!2.31!MESP1;;chr17:36105074..36105086,-!p2@HNF1B!0.52!2.31!HNF1B;;chr17:46806098..46806118,-!p3@HOXB13!0.52!2.31!HOXB13;;chr19:12348371..12348386,-!p5@ZNF44!0.52!2.31!ZNF44;;chr19:3574157..3574180,+!p4@HMG20B!0.52!2.31!HMG20B;;chr5:134369973..134369984,-!p3@PITX1!0.52!2.31!PITX1;;chr6:10412477..10412490,-!p10@TFAP2A!0.52!2.31!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!0.52!2.31!TFAP2A;;chr12:19592405..19592492,+!p2@AEBP2!0.51!25.01!AEBP2;;chr10:35415951..35415975,+!p8@CREM!0.51!3.46!CREM;;chr3:141087339..141087387,+!p2@ZBTB38!0.50!28.86!ZBTB38;;chr2:75937794..75937867,-!p2@GCFC2!0.50!5.77!GCFC2;;chr1:8938736..8938756,-!p1@ENO1!0.49!3076.05!ENO1;;chr11:47279504..47279563,+!p1@NR1H3!0.49!5.77!NR1H3;;chr8:67525443..67525459,-!p2@MYBL1!0.49!3.46!MYBL1;;chr6:43138999..43139017,+!p2@SRF!0.48!15.77!SRF;;chr17:47492252..47492265,-!p2@PHB!0.48!10.77!PHB;;chr18:47814010..47814021,-!p3@CXXC1!0.48!3.85!CXXC1;;chr2:85981222..85981259,+!p2@ATOH8!0.48!3.85!ATOH8;;chr1:8926441..8926473,-!p10@ENO1!0.48!3.46!ENO1;;chr1:23885981..23886002,-!p1@ID3!0.47!473.24!ID3;;chr5:34929677..34929789,+!p1@DNAJC21!0.47!78.10!DNAJC21;;chr1:23857698..23857733,-!p1@E2F2!0.47!4.23!E2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.47!3.85!TWIST2;;chr17:17726892..17726903,-!p6@SREBF1!0.47!2.31!SREBF1;;chr17:48045917..48045977,+!p1@DLX4!0.47!1.92!DLX4;;chr17:48072574..48072597,-!p1@DLX3!0.47!1.92!DLX3;;chr2:63277948..63277974,+!p1@OTX1!0.47!1.92!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.47!1.92!FOXL2;;chr10:104155680..104155687,+!p6@NFKB2!0.47!1.92!NFKB2;;chr12:3068634..3068656,+!p5@TEAD4!0.47!1.92!TEAD4;;chr12:51158359..51158395,+!p4@ATF1!0.47!1.92!ATF1;;chr12:54366975..54367001,+!p1@HOXC11!0.47!1.92!HOXC11;;chr12:54394416..54394467,+!p5@HOXC9!0.47!1.92!HOXC9;;chr14:37051798..37051831,-!p1@NKX2-8!0.47!1.92!NKX2-8;;chr5:134369643..134369675,-!p4@PITX1!0.47!1.92!PITX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.47!1.92!TFAP2A;;chr6:126240542..126240553,+!p14@NCOA7!0.47!1.92!NCOA7;;chr6:1389989..1390019,+!p2@FOXF2!0.47!1.92!FOXF2;;chr7:27239740..27239759,-!p2@HOXA13!0.47!1.92!HOXA13;;chr7:73038839..73038862,-!p1@MLXIPL!0.47!1.92!MLXIPL;;chr9:102584278..102584285,+!p5@NR4A3!0.47!1.92!NR4A3;;chr14:55493763..55493824,-!p1@WDHD1!0.46!19.24!WDHD1;;chr10:104155480..104155534,+!p2@NFKB2!0.46!16.54!NFKB2;;chr18:45457423..45457468,-!p5@SMAD2!0.46!9.23!SMAD2;;chr1:23857325..23857416,-!p2@E2F2!0.46!2.31!E2F2;;chr6:20402070..20402082,+!p5@E2F3!0.46!2.31!E2F3;;chr16:29817789..29817838,+!p2@MAZ!0.44!33.86!MAZ;;chr2:178128149..178128198,-!p2@NFE2L2!0.44!12.70!NFE2L2;;chr1:45805813..45805859,+!p1@TOE1!0.44!10.77!TOE1;;chr12:3069037..3069119,+!p2@TEAD4!0.44!8.08!TEAD4;;chr2:239756671..239756732,+!p1@TWIST2!0.44!7.31!TWIST2;;chr8:67525473..67525518,-!p1@MYBL1!0.44!5.00!MYBL1;;chr1:249132462..249132481,+!p6@ZNF672!0.44!3.46!ZNF672;;chr1:212782094..212782109,+!p1@ATF3!0.43!66.56!ATF3;;chr6:144329384..144329405,-!p1@PLAGL1!0.43!27.70!PLAGL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.43!21.16!PPP1R13L;;chr14:62213827..62213853,+!p6@HIF1A!0.43!2.69!HIF1A;;chr9:99180662..99180690,-!p2@ZNF367!0.43!2.69!ZNF367;;chr2:74375081..74375092,-!p2@BOLA3!0.42!4.23!BOLA3;;chr3:24536253..24536328,-!p1@THRB!0.42!3.85!THRB;;chr4:87857474..87857489,+!p7@AFF1!0.42!3.46!AFF1;;chrX:70504244..70504278,+!p4@NONO!0.42!3.08!NONO;;chr16:54320101..54320125,-!p4@IRX3!0.42!2.69!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.42!2.69!IRX5;;chr16:54320617..54320643,-!p3@IRX3!0.42!2.31!IRX3;;chr7:1577111..1577132,+!p4@MAFK!0.42!1.92!MAFK;;chr12:2986206..2986258,-!p2@FOXM1!0.41!13.47!FOXM1;;chr16:1429627..1429662,-!p2@UNKL!0.41!6.16!UNKL;;chr1:8923998..8924033,-!p8@ENO1!0.41!3.46!ENO1;;chr11:3400442..3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| ||
|ffid_belonging_in_development=UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316 | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000639,FF:0011134,FF:11896-125E6 | |fonse_treatment_closure=FF:0000625,FF:0000632,FF:0000639,FF:0011134,FF:11896-125E6 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep3.CNhs13499.11896-125E6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep3.CNhs13499.11896-125E6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep3.CNhs13499.11896-125E6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep3.CNhs13499.11896-125E6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hep-2%2520cells%2520treated%2520with%2520Streptococci%2520strain%2520JRS4%252c%2520biol_rep3.CNhs13499.11896-125E6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11896-125E6 | |id=FF:11896-125E6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011134 | ||
|is_obsolete= | |||
|library_id=CNhs13499 | |||
|library_id_phase_based=2:CNhs13499 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11896 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11896 | |||
|name=Hep-2 cells treated with Streptococci strain JRS4, biol_rep3 | |name=Hep-2 cells treated with Streptococci strain JRS4, biol_rep3 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13499,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13499,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin=9.6 | |rna_rin=9.6 | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.25E+08 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age=56 | |sample_age=56 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=Hep-2 | |sample_cell_line=Hep-2 | ||
| Line 77: | Line 99: | ||
|sample_tissue= | |sample_tissue= | ||
|top_motifs=ESRRA:1.86248839871;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.7390907079;PPARG:1.63215805797;HES1:1.58500911002;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.5752529006;E2F1..5:1.56929398055;FOXM1:1.39421945517;NR5A1,2:1.28255545967;ELK1,4_GABP{A,B1}:1.18770515853;FOXQ1:1.13261384624;YY1:0.997614625131;bHLH_family:0.831316974252;FOXN1:0.754792402688;NRF1:0.740816926278;NR6A1:0.731997661223;PAX8:0.707827628405;NKX3-1:0.699796016955;MYB:0.666081308914;HOX{A6,A7,B6,B7}:0.652718517127;HIF1A:0.648179948692;NFY{A,B,C}:0.646232658876;PAX1,9:0.64410205857;PAX5:0.644101714842;HNF4A_NR2F1,2:0.639023635174;ARID5B:0.616084063431;HOXA9_MEIS1:0.602672584121;ZNF143:0.566445022769;CREB1:0.55764098358;POU1F1:0.554564454952;GCM1,2:0.523959422643;EP300:0.505362351454;NKX3-2:0.496400031793;SNAI1..3:0.469385710638;ZEB1:0.459405404609;LEF1_TCF7_TCF7L1,2:0.391784572962;IRF7:0.349794326131;TBX4,5:0.339978860671;IKZF1:0.33748103118;ALX1:0.322842375428;GFI1:0.319898193415;FOX{F1,F2,J1}:0.309981194126;FOXD3:0.307423083018;TEAD1:0.304008515469;UFEwm:0.274361973746;ZNF148:0.271024938889;PDX1:0.26669207568;MYOD1:0.265700889472;TP53:0.244284799276;PAX2:0.197703552853;ATF5_CREB3:0.18831326365;HLF:0.159038433675;NFE2L1:0.147581294606;ZBTB16:0.142496515685;VSX1,2:0.118762020676;HSF1,2:0.118435829074;GFI1B:0.111427148587;HOX{A5,B5}:0.106065640727;PAX3,7:0.105032802875;STAT5{A,B}:0.0906725838824;BACH2:0.0800196761053;NANOG:0.0622206517278;ONECUT1,2:0.0579448438128;LHX3,4:0.0560130523313;ATF6:0.0534931896222;NFE2:0.0496793575842;PAX4:0.041252383219;CUX2:0.0405113384999;RORA:0.0299556835015;OCT4_SOX2{dimer}:0.0207230402247;NR3C1:0.012279031095;ZNF423:0.000144463227079;TFDP1:-0.00254373317081;CDX1,2,4:-0.014366090772;PRRX1,2:-0.0172398188364;PITX1..3:-0.0302242377374;FOS_FOS{B,L1}_JUN{B,D}:-0.0388208617707;MYBL2:-0.0390773840808;PBX1:-0.0501136517204;ALX4:-0.0515958467604;CDC5L:-0.0562854499129;HAND1,2:-0.059875092564;HNF1A:-0.0636352481454;NFE2L2:-0.0650710439108;RXR{A,B,G}:-0.0699595740251;AHR_ARNT_ARNT2:-0.0809970546272;GTF2A1,2:-0.0818407751011;BREu{core}:-0.0880193787657;MEF2{A,B,C,D}:-0.0960019869584;HOX{A4,D4}:-0.097530679401;TBP:-0.128870249928;MAFB:-0.13421604669;ESR1:-0.137865781791;TLX1..3_NFIC{dimer}:-0.143441387458;TEF:-0.144120193483;MTF1:-0.16749102535;IKZF2:-0.180574678624;ATF4:-0.181908141354;RFX2..5_RFXANK_RFXAP:-0.199825358749;SOX{8,9,10}:-0.215058671001;NFIL3:-0.232674887838;ZBTB6:-0.244307935822;GLI1..3:-0.256826042682;LMO2:-0.257990414999;NFKB1_REL_RELA:-0.259789206718;FOXA2:-0.267238588621;FOSL2:-0.269503720913;ELF1,2,4:-0.274787949646;NKX2-2,8:-0.278810234454;NKX6-1,2:-0.284601477753;GZF1:-0.304735363647;PAX6:-0.306407427952;FOX{I1,J2}:-0.308304577953;POU3F1..4:-0.312571261033;CEBPA,B_DDIT3:-0.324760000012;T:-0.341790694616;JUN:-0.348621625835;RXRA_VDR{dimer}:-0.349147883795;NR1H4:-0.352660466046;KLF4:-0.354288787917;TFCP2:-0.361384440193;RFX1:-0.365820996854;STAT2,4,6:-0.371890423009;GATA6:-0.381746056397;EN1,2:-0.386136630658;SREBF1,2:-0.402756652526;DBP:-0.468124699849;CRX:-0.469680846239;SOX17:-0.477425436985;FOXP3:-0.480293023094;IRF1,2:-0.497234541142;BPTF:-0.51854499828;EVI1:-0.524643733645;SPIB:-0.532988890978;REST:-0.537992442169;ZFP161:-0.538681650538;EBF1:-0.549173252988;HIC1:-0.553840003838;GTF2I:-0.592896027457;POU6F1:-0.598633978513;TFAP2{A,C}:-0.600091991239;ZNF384:-0.602674728103;SPI1:-0.607914945987;POU2F1..3:-0.618322410853;RBPJ:-0.623423343977;NKX2-1,4:-0.628351551876;SOX5:-0.629245244715;AIRE:-0.636389888401;SRF:-0.644525280826;RUNX1..3:-0.714574963597;AR:-0.733633911191;TFAP4:-0.749329310444;FOXL1:-0.766126064617;FOXP1:-0.766505046527;ETS1,2:-0.778404935305;ADNP_IRX_SIX_ZHX:-0.788683521583;TFAP2B:-0.800013143371;TAL1_TCF{3,4,12}:-0.817946110633;HBP1_HMGB_SSRP1_UBTF:-0.827578125879;NHLH1,2:-0.830999368108;SP1:-0.838981653975;ZIC1..3:-0.839492205281;NFATC1..3:-0.857323076363;ATF2:-0.873550525048;MED-1{core}:-0.876171177111;HMGA1,2:-0.895567831727;GATA4:-0.901231281242;POU5F1:-0.952923916914;FOX{D1,D2}:-0.998328630513;SOX2:-1.0048757321;DMAP1_NCOR{1,2}_SMARC:-1.01193891764;RREB1:-1.03186458498;MYFfamily:-1.03526332826;TGIF1:-1.07054829679;MAZ:-1.0757838636;ZNF238:-1.12023944195;XCPE1{core}:-1.12617481611;EGR1..3:-1.14081430107;FOXO1,3,4:-1.14224191136;SMAD1..7,9:-1.15090251932;MTE{core}:-1.16996079383;XBP1:-1.170358838;NKX2-3_NKX2-5:-1.18711068592;TOPORS:-1.19851168107;PRDM1:-1.20146455297;STAT1,3:-1.34962664711;HMX1:-1.35552506957;MZF1:-1.36819348115;TLX2:-1.39672016351;NFIX:-1.40924611381;PATZ1:-1.42485524419;NANOG{mouse}:-1.45782202847;SPZ1:-1.83550848291 | |top_motifs=ESRRA:1.86248839871;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.7390907079;PPARG:1.63215805797;HES1:1.58500911002;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.5752529006;E2F1..5:1.56929398055;FOXM1:1.39421945517;NR5A1,2:1.28255545967;ELK1,4_GABP{A,B1}:1.18770515853;FOXQ1:1.13261384624;YY1:0.997614625131;bHLH_family:0.831316974252;FOXN1:0.754792402688;NRF1:0.740816926278;NR6A1:0.731997661223;PAX8:0.707827628405;NKX3-1:0.699796016955;MYB:0.666081308914;HOX{A6,A7,B6,B7}:0.652718517127;HIF1A:0.648179948692;NFY{A,B,C}:0.646232658876;PAX1,9:0.64410205857;PAX5:0.644101714842;HNF4A_NR2F1,2:0.639023635174;ARID5B:0.616084063431;HOXA9_MEIS1:0.602672584121;ZNF143:0.566445022769;CREB1:0.55764098358;POU1F1:0.554564454952;GCM1,2:0.523959422643;EP300:0.505362351454;NKX3-2:0.496400031793;SNAI1..3:0.469385710638;ZEB1:0.459405404609;LEF1_TCF7_TCF7L1,2:0.391784572962;IRF7:0.349794326131;TBX4,5:0.339978860671;IKZF1:0.33748103118;ALX1:0.322842375428;GFI1:0.319898193415;FOX{F1,F2,J1}:0.309981194126;FOXD3:0.307423083018;TEAD1:0.304008515469;UFEwm:0.274361973746;ZNF148:0.271024938889;PDX1:0.26669207568;MYOD1:0.265700889472;TP53:0.244284799276;PAX2:0.197703552853;ATF5_CREB3:0.18831326365;HLF:0.159038433675;NFE2L1:0.147581294606;ZBTB16:0.142496515685;VSX1,2:0.118762020676;HSF1,2:0.118435829074;GFI1B:0.111427148587;HOX{A5,B5}:0.106065640727;PAX3,7:0.105032802875;STAT5{A,B}:0.0906725838824;BACH2:0.0800196761053;NANOG:0.0622206517278;ONECUT1,2:0.0579448438128;LHX3,4:0.0560130523313;ATF6:0.0534931896222;NFE2:0.0496793575842;PAX4:0.041252383219;CUX2:0.0405113384999;RORA:0.0299556835015;OCT4_SOX2{dimer}:0.0207230402247;NR3C1:0.012279031095;ZNF423:0.000144463227079;TFDP1:-0.00254373317081;CDX1,2,4:-0.014366090772;PRRX1,2:-0.0172398188364;PITX1..3:-0.0302242377374;FOS_FOS{B,L1}_JUN{B,D}:-0.0388208617707;MYBL2:-0.0390773840808;PBX1:-0.0501136517204;ALX4:-0.0515958467604;CDC5L:-0.0562854499129;HAND1,2:-0.059875092564;HNF1A:-0.0636352481454;NFE2L2:-0.0650710439108;RXR{A,B,G}:-0.0699595740251;AHR_ARNT_ARNT2:-0.0809970546272;GTF2A1,2:-0.0818407751011;BREu{core}:-0.0880193787657;MEF2{A,B,C,D}:-0.0960019869584;HOX{A4,D4}:-0.097530679401;TBP:-0.128870249928;MAFB:-0.13421604669;ESR1:-0.137865781791;TLX1..3_NFIC{dimer}:-0.143441387458;TEF:-0.144120193483;MTF1:-0.16749102535;IKZF2:-0.180574678624;ATF4:-0.181908141354;RFX2..5_RFXANK_RFXAP:-0.199825358749;SOX{8,9,10}:-0.215058671001;NFIL3:-0.232674887838;ZBTB6:-0.244307935822;GLI1..3:-0.256826042682;LMO2:-0.257990414999;NFKB1_REL_RELA:-0.259789206718;FOXA2:-0.267238588621;FOSL2:-0.269503720913;ELF1,2,4:-0.274787949646;NKX2-2,8:-0.278810234454;NKX6-1,2:-0.284601477753;GZF1:-0.304735363647;PAX6:-0.306407427952;FOX{I1,J2}:-0.308304577953;POU3F1..4:-0.312571261033;CEBPA,B_DDIT3:-0.324760000012;T:-0.341790694616;JUN:-0.348621625835;RXRA_VDR{dimer}:-0.349147883795;NR1H4:-0.352660466046;KLF4:-0.354288787917;TFCP2:-0.361384440193;RFX1:-0.365820996854;STAT2,4,6:-0.371890423009;GATA6:-0.381746056397;EN1,2:-0.386136630658;SREBF1,2:-0.402756652526;DBP:-0.468124699849;CRX:-0.469680846239;SOX17:-0.477425436985;FOXP3:-0.480293023094;IRF1,2:-0.497234541142;BPTF:-0.51854499828;EVI1:-0.524643733645;SPIB:-0.532988890978;REST:-0.537992442169;ZFP161:-0.538681650538;EBF1:-0.549173252988;HIC1:-0.553840003838;GTF2I:-0.592896027457;POU6F1:-0.598633978513;TFAP2{A,C}:-0.600091991239;ZNF384:-0.602674728103;SPI1:-0.607914945987;POU2F1..3:-0.618322410853;RBPJ:-0.623423343977;NKX2-1,4:-0.628351551876;SOX5:-0.629245244715;AIRE:-0.636389888401;SRF:-0.644525280826;RUNX1..3:-0.714574963597;AR:-0.733633911191;TFAP4:-0.749329310444;FOXL1:-0.766126064617;FOXP1:-0.766505046527;ETS1,2:-0.778404935305;ADNP_IRX_SIX_ZHX:-0.788683521583;TFAP2B:-0.800013143371;TAL1_TCF{3,4,12}:-0.817946110633;HBP1_HMGB_SSRP1_UBTF:-0.827578125879;NHLH1,2:-0.830999368108;SP1:-0.838981653975;ZIC1..3:-0.839492205281;NFATC1..3:-0.857323076363;ATF2:-0.873550525048;MED-1{core}:-0.876171177111;HMGA1,2:-0.895567831727;GATA4:-0.901231281242;POU5F1:-0.952923916914;FOX{D1,D2}:-0.998328630513;SOX2:-1.0048757321;DMAP1_NCOR{1,2}_SMARC:-1.01193891764;RREB1:-1.03186458498;MYFfamily:-1.03526332826;TGIF1:-1.07054829679;MAZ:-1.0757838636;ZNF238:-1.12023944195;XCPE1{core}:-1.12617481611;EGR1..3:-1.14081430107;FOXO1,3,4:-1.14224191136;SMAD1..7,9:-1.15090251932;MTE{core}:-1.16996079383;XBP1:-1.170358838;NKX2-3_NKX2-5:-1.18711068592;TOPORS:-1.19851168107;PRDM1:-1.20146455297;STAT1,3:-1.34962664711;HMX1:-1.35552506957;MZF1:-1.36819348115;TLX2:-1.39672016351;NFIX:-1.40924611381;PATZ1:-1.42485524419;NANOG{mouse}:-1.45782202847;SPZ1:-1.83550848291 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11896-125E6;search_select_hide=table117:FF:11896-125E6 | |||
}} | }} | ||
Latest revision as of 18:27, 4 June 2020
| Name: | Hep-2 cells treated with Streptococci strain JRS4, biol_rep3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13499 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13499
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13499
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0294 |
| 10 | 10 | 0.0469 |
| 100 | 100 | 0.0409 |
| 101 | 101 | 0.276 |
| 102 | 102 | 0.911 |
| 103 | 103 | 0.493 |
| 104 | 104 | 0.851 |
| 105 | 105 | 0.174 |
| 106 | 106 | 0.0967 |
| 107 | 107 | 0.184 |
| 108 | 108 | 0.783 |
| 109 | 109 | 0.00111 |
| 11 | 11 | 0.468 |
| 110 | 110 | 0.228 |
| 111 | 111 | 0.272 |
| 112 | 112 | 0.779 |
| 113 | 113 | 0.00478 |
| 114 | 114 | 0.187 |
| 115 | 115 | 0.524 |
| 116 | 116 | 0.218 |
| 117 | 117 | 0.11 |
| 118 | 118 | 0.0822 |
| 119 | 119 | 0.255 |
| 12 | 12 | 0.477 |
| 120 | 120 | 0.0145 |
| 121 | 121 | 0.352 |
| 122 | 122 | 0.152 |
| 123 | 123 | 0.063 |
| 124 | 124 | 0.771 |
| 125 | 125 | 0.505 |
| 126 | 126 | 0.564 |
| 127 | 127 | 0.101 |
| 128 | 128 | 0.00115 |
| 129 | 129 | 0.693 |
| 13 | 13 | 2.64397e-4 |
| 130 | 130 | 0.765 |
| 131 | 131 | 0.175 |
| 132 | 132 | 0.95 |
| 133 | 133 | 0.119 |
| 134 | 134 | 0.878 |
| 135 | 135 | 0.316 |
| 136 | 136 | 0.00925 |
| 137 | 137 | 0.292 |
| 138 | 138 | 0.605 |
| 139 | 139 | 0.263 |
| 14 | 14 | 0.34 |
| 140 | 140 | 0.596 |
| 141 | 141 | 0.0561 |
| 142 | 142 | 0.868 |
| 143 | 143 | 0.615 |
| 144 | 144 | 0.571 |
| 145 | 145 | 0.24 |
| 146 | 146 | 0.996 |
| 147 | 147 | 0.579 |
| 148 | 148 | 0.392 |
| 149 | 149 | 0.678 |
| 15 | 15 | 0.255 |
| 150 | 150 | 0.466 |
| 151 | 151 | 0.863 |
| 152 | 152 | 0.662 |
| 153 | 153 | 0.517 |
| 154 | 154 | 0.285 |
| 155 | 155 | 0.183 |
| 156 | 156 | 0.0145 |
| 157 | 157 | 0.116 |
| 158 | 158 | 0.356 |
| 159 | 159 | 0.277 |
| 16 | 16 | 0.503 |
| 160 | 160 | 0.337 |
| 161 | 161 | 0.228 |
| 162 | 162 | 0.886 |
| 163 | 163 | 0.32 |
| 164 | 164 | 0.0205 |
| 165 | 165 | 0.9 |
| 166 | 166 | 0.0181 |
| 167 | 167 | 0.111 |
| 168 | 168 | 0.704 |
| 169 | 169 | 0.143 |
| 17 | 17 | 0.789 |
| 18 | 18 | 0.54 |
| 19 | 19 | 0.794 |
| 2 | 2 | 0.612 |
| 20 | 20 | 0.0942 |
| 21 | 21 | 0.13 |
| 22 | 22 | 0.928 |
| 23 | 23 | 0.0142 |
| 24 | 24 | 0.233 |
| 25 | 25 | 0.219 |
| 26 | 26 | 0.41 |
| 27 | 27 | 0.87 |
| 28 | 28 | 0.912 |
| 29 | 29 | 0.0066 |
| 3 | 3 | 0.879 |
| 30 | 30 | 0.394 |
| 31 | 31 | 0.696 |
| 32 | 32 | 0.187 |
| 33 | 33 | 0.141 |
| 34 | 34 | 0.267 |
| 35 | 35 | 0.789 |
| 36 | 36 | 0.0479 |
| 37 | 37 | 0.223 |
| 38 | 38 | 0.571 |
| 39 | 39 | 0.833 |
| 4 | 4 | 0.239 |
| 40 | 40 | 0.00591 |
| 41 | 41 | 0.346 |
| 42 | 42 | 0.765 |
| 43 | 43 | 0.896 |
| 44 | 44 | 0.0348 |
| 45 | 45 | 0.301 |
| 46 | 46 | 0.908 |
| 47 | 47 | 0.158 |
| 48 | 48 | 0.388 |
| 49 | 49 | 0.499 |
| 5 | 5 | 0.584 |
| 50 | 50 | 0.932 |
| 51 | 51 | 0.869 |
| 52 | 52 | 0.342 |
| 53 | 53 | 0.217 |
| 54 | 54 | 0.607 |
| 55 | 55 | 0.0609 |
| 56 | 56 | 0.788 |
| 57 | 57 | 0.286 |
| 58 | 58 | 0.703 |
| 59 | 59 | 0.82 |
| 6 | 6 | 0.877 |
| 60 | 60 | 0.879 |
| 61 | 61 | 0.0294 |
| 62 | 62 | 0.59 |
| 63 | 63 | 0.42 |
| 64 | 64 | 0.692 |
| 65 | 65 | 0.761 |
| 66 | 66 | 0.843 |
| 67 | 67 | 0.734 |
| 68 | 68 | 0.597 |
| 69 | 69 | 0.885 |
| 7 | 7 | 0.0194 |
| 70 | 70 | 0.851 |
| 71 | 71 | 0.00993 |
| 72 | 72 | 0.841 |
| 73 | 73 | 0.352 |
| 74 | 74 | 0.249 |
| 75 | 75 | 0.0986 |
| 76 | 76 | 0.175 |
| 77 | 77 | 0.294 |
| 78 | 78 | 0.1 |
| 79 | 79 | 0.937 |
| 8 | 8 | 0.0313 |
| 80 | 80 | 0.0559 |
| 81 | 81 | 0.522 |
| 82 | 82 | 0.301 |
| 83 | 83 | 0.439 |
| 84 | 84 | 0.352 |
| 85 | 85 | 0.0874 |
| 86 | 86 | 0.921 |
| 87 | 87 | 0.0068 |
| 88 | 88 | 0.989 |
| 89 | 89 | 0.513 |
| 9 | 9 | 0.72 |
| 90 | 90 | 0.0278 |
| 91 | 91 | 0.0082 |
| 92 | 92 | 0.37 |
| 93 | 93 | 0.207 |
| 94 | 94 | 0.805 |
| 95 | 95 | 0.011 |
| 96 | 96 | 0.593 |
| 97 | 97 | 0.888 |
| 98 | 98 | 0.712 |
| 99 | 99 | 0.705 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13499
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011134 human Hep-2 cells treated with Streptococci strain JRS4 sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000639 (Streptococcus strain JRS4 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011134 (human Hep-2 cells treated with Streptococci strain JRS4 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
