FF:11757-123H2: Difference between revisions

Latest revision as of 18:18, 4 June 2020

Name:	mesenchymal precursor cell - ovarian cancer right ovary, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12373
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	ovary
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005655

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12373		CAGE		DRX008563		DRR009435

Accession ID Hg19

Library id		BAM		CTSS
CNhs12373		DRZ000860		DRZ002245

Accession ID Hg38

Library id		BAM		CTSS
CNhs12373		DRZ012210		DRZ013595

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0269
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.463
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.065
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0649
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.171
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.259
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0372
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0141
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0609
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.148
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.148
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0657
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0189
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.253
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.148
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.148
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.303
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.42
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.799
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.259
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.346
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12373

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.961
MA0003.1	MA0003.1	0.914
MA0004.1	MA0004.1	0.0027
MA0006.1	MA0006.1	0.856
MA0007.1	MA0007.1	0.54
MA0009.1	MA0009.1	0.65
MA0014.1	MA0014.1	0.67
MA0017.1	MA0017.1	0.346
MA0018.2	MA0018.2	5.11963e-5
MA0019.1	MA0019.1	0.138
MA0024.1	MA0024.1	0.614
MA0025.1	MA0025.1	0.203
MA0027.1	MA0027.1	0.974
MA0028.1	MA0028.1	0.134
MA0029.1	MA0029.1	0.633
MA0030.1	MA0030.1	0.00954
MA0031.1	MA0031.1	0.0105
MA0035.2	MA0035.2	0.235
MA0038.1	MA0038.1	0.748
MA0039.2	MA0039.2	0.608
MA0040.1	MA0040.1	0.956
MA0041.1	MA0041.1	0.493
MA0042.1	MA0042.1	0.692
MA0043.1	MA0043.1	0.00314
MA0046.1	MA0046.1	0.00618
MA0047.2	MA0047.2	0.11
MA0048.1	MA0048.1	0.302
MA0050.1	MA0050.1	0.155
MA0051.1	MA0051.1	0.756
MA0052.1	MA0052.1	0.0428
MA0055.1	MA0055.1	0.368
MA0057.1	MA0057.1	0.492
MA0058.1	MA0058.1	0.00248
MA0059.1	MA0059.1	0.811
MA0060.1	MA0060.1	0.00387
MA0061.1	MA0061.1	0.41
MA0062.2	MA0062.2	0.746
MA0065.2	MA0065.2	0.217
MA0066.1	MA0066.1	0.939
MA0067.1	MA0067.1	0.0133
MA0068.1	MA0068.1	0.146
MA0069.1	MA0069.1	0.468
MA0070.1	MA0070.1	0.856
MA0071.1	MA0071.1	0.148
MA0072.1	MA0072.1	0.297
MA0073.1	MA0073.1	0.481
MA0074.1	MA0074.1	0.635
MA0076.1	MA0076.1	0.0621
MA0077.1	MA0077.1	0.217
MA0078.1	MA0078.1	0.875
MA0079.2	MA0079.2	0.0262
MA0080.2	MA0080.2	4.58273e-5
MA0081.1	MA0081.1	0.0215
MA0083.1	MA0083.1	0.00792
MA0084.1	MA0084.1	0.818
MA0087.1	MA0087.1	0.722
MA0088.1	MA0088.1	0.723
MA0090.1	MA0090.1	0.00595
MA0091.1	MA0091.1	0.838
MA0092.1	MA0092.1	0.118
MA0093.1	MA0093.1	0.0172
MA0099.2	MA0099.2	1.69386e-13
MA0100.1	MA0100.1	0.507
MA0101.1	MA0101.1	0.623
MA0102.2	MA0102.2	0.352
MA0103.1	MA0103.1	5.83655e-5
MA0104.2	MA0104.2	0.215
MA0105.1	MA0105.1	0.00156
MA0106.1	MA0106.1	0.127
MA0107.1	MA0107.1	0.802
MA0108.2	MA0108.2	0.0461
MA0111.1	MA0111.1	0.748
MA0112.2	MA0112.2	0.0486
MA0113.1	MA0113.1	0.891
MA0114.1	MA0114.1	0.437
MA0115.1	MA0115.1	0.658
MA0116.1	MA0116.1	0.034
MA0117.1	MA0117.1	0.965
MA0119.1	MA0119.1	0.0337
MA0122.1	MA0122.1	0.665
MA0124.1	MA0124.1	0.273
MA0125.1	MA0125.1	0.638
MA0131.1	MA0131.1	0.447
MA0135.1	MA0135.1	0.244
MA0136.1	MA0136.1	0.00374
MA0137.2	MA0137.2	0.12
MA0138.2	MA0138.2	0.233
MA0139.1	MA0139.1	0.178
MA0140.1	MA0140.1	0.554
MA0141.1	MA0141.1	0.0481
MA0142.1	MA0142.1	0.82
MA0143.1	MA0143.1	0.736
MA0144.1	MA0144.1	0.202
MA0145.1	MA0145.1	0.245
MA0146.1	MA0146.1	0.184
MA0147.1	MA0147.1	0.956
MA0148.1	MA0148.1	0.404
MA0149.1	MA0149.1	0.796
MA0150.1	MA0150.1	0.086
MA0152.1	MA0152.1	0.0744
MA0153.1	MA0153.1	0.0953
MA0154.1	MA0154.1	0.333
MA0155.1	MA0155.1	0.835
MA0156.1	MA0156.1	0.319
MA0157.1	MA0157.1	0.217
MA0159.1	MA0159.1	0.706
MA0160.1	MA0160.1	0.0113
MA0162.1	MA0162.1	0.0528
MA0163.1	MA0163.1	0.00362
MA0164.1	MA0164.1	0.917
MA0258.1	MA0258.1	0.435
MA0259.1	MA0259.1	0.621

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12373

Novel motif	Logo	P-value
1	1	0.323
10	10	0.335
100	100	0.426
101	101	0.727
102	102	0.336
103	103	0.162
104	104	0.882
105	105	0.147
106	106	0.635
107	107	0.293
108	108	0.339
109	109	0.831
11	11	0.866
110	110	0.00812
111	111	0.141
112	112	0.807
113	113	0.0318
114	114	0.309
115	115	0.612
116	116	0.662
117	117	0.285
118	118	0.993
119	119	0.483
12	12	0.41
120	120	0.157
121	121	0.884
122	122	0.352
123	123	5.9201e-4
124	124	0.525
125	125	0.574
126	126	0.748
127	127	0.777
128	128	0.723
129	129	0.793
13	13	0.162
130	130	0.8
131	131	0.00772
132	132	0.825
133	133	0.856
134	134	0.922
135	135	0.658
136	136	0.706
137	137	0.601
138	138	0.857
139	139	0.282
14	14	0.109
140	140	0.698
141	141	0.852
142	142	0.732
143	143	0.442
144	144	0.826
145	145	0.949
146	146	0.981
147	147	0.0382
148	148	0.733
149	149	0.398
15	15	0.313
150	150	0.645
151	151	0.501
152	152	0.926
153	153	0.835
154	154	0.491
155	155	0.00561
156	156	0.356
157	157	0.147
158	158	0.0151
159	159	0.128
16	16	0.103
160	160	0.771
161	161	0.33
162	162	0.617
163	163	0.0326
164	164	0.497
165	165	0.779
166	166	0.412
167	167	0.935
168	168	0.792
169	169	0.367
17	17	0.774
18	18	0.261
19	19	0.522
2	2	0.618
20	20	0.304
21	21	0.922
22	22	0.995
23	23	0.118
24	24	0.314
25	25	0.853
26	26	0.905
27	27	0.506
28	28	0.999
29	29	0.039
3	3	0.482
30	30	0.563
31	31	0.273
32	32	0.101
33	33	0.151
34	34	0.36
35	35	0.66
36	36	0.83
37	37	0.158
38	38	0.587
39	39	0.488
4	4	0.0741
40	40	0.979
41	41	0.902
42	42	0.786
43	43	0.737
44	44	0.99
45	45	0.408
46	46	0.526
47	47	0.979
48	48	0.801
49	49	0.0977
5	5	0.521
50	50	0.994
51	51	0.657
52	52	0.546
53	53	0.0404
54	54	0.385
55	55	0.128
56	56	0.46
57	57	0.938
58	58	0.884
59	59	0.94
6	6	0.249
60	60	0.681
61	61	0.558
62	62	0.55
63	63	0.753
64	64	0.468
65	65	0.449
66	66	0.905
67	67	0.55
68	68	0.851
69	69	0.466
7	7	0.844
70	70	0.245
71	71	0.0847
72	72	0.872
73	73	0.717
74	74	0.13
75	75	0.247
76	76	0.942
77	77	0.213
78	78	0.448
79	79	0.359
8	8	0.357
80	80	0.452
81	81	0.876
82	82	0.314
83	83	0.167
84	84	0.827
85	85	0.731
86	86	0.894
87	87	0.376
88	88	0.644
89	89	0.0732
9	9	0.484
90	90	0.192
91	91	0.964
92	92	0.671
93	93	0.529
94	94	0.781
95	95	0.243
96	96	0.504
97	97	0.244
98	98	0.134
99	99	0.0821

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12373

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000275 human mesenchymal precursor cell- ovarian cancer-right ovary sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002118 (right ovary)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000275 (human mesenchymal precursor cell- ovarian cancer-right ovary sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0001048,UBERON:0006598,UBERON:0003886,UBERON:0004176,UBERON:0002532,UBERON:0002118,UBERON:0003100,UBERON:0000474,UBERON:0004532,UBERON:0009196,UBERON:0009117,UBERON:0006603,UBERON:0005564
+|DRA_sample_Accession=CAGE@SAMD00005655
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255
+|accession_numbers=CAGE;DRX008563;DRR009435;DRZ000860;DRZ002245;DRZ012210;DRZ013595
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002118,UBERON:0003100,UBERON:0000474
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:2394,DOID:120
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000272,FF:0000275
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:61520075..61520136,+!p1@C11orf9!1.33!42.72!C11orf9;;chr3:25470156..25470227,+!p2@RARB!1.23!15.87!RARB;;chr8:55370487..55370503,+!p1@SOX17!1.21!15.05!SOX17;;chr21:36260773..36260804,-!p7@RUNX1!1.18!19.12!RUNX1;;chr12:26277817..26277863,-!p2@BHLHE41!1.09!15.46!BHLHE41;;chr2:114036488..114036504,-!p1@PAX8!1.08!10.99!PAX8;;chr8:11561684..11561751,+!p1@GATA4!1.08!10.99!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!1.07!55.74!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.07!14.65!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.06!28.89!OSR1;;chr3:25469815..25469866,+!p3@RARB!1.06!10.58!RARB;;chr7:27183263..27183284,-!p2@HOXA5!1.03!9.76!HOXA5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.03!9.76!ZBED1;;chr11:65686802..65686818,+!p6@DRAP1!1.02!16.68!DRAP1;;chr11:120107344..120107351,+!p1@POU2F3!1.02!11.39!POU2F3;;chr18:19749541..19749557,+!p1@GATA6!0.99!28.48!GATA6;;chr7:27183114..27183138,-!p3@HOXA5!0.98!8.54!HOXA5;;chr1:170633262..170633285,+!p3@PRRX1!0.96!9.36!PRRX1;;chr7:27183291..27183324,-!p1@HOXA5!0.96!8.14!HOXA5;;chr11:65686732..65686756,+!p2@DRAP1!0.94!33.77!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.54!PRRX1;;chr19:45971246..45971265,+!p1@FOSB!0.92!143.63!FOSB;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.32!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.92!7.32!HOXC5;;chr1:151032860..151032918,+!p1@MLLT11!0.91!89.10!MLLT11;;chr3:5021268..5021282,+!p4@BHLHE40!0.91!15.05!BHLHE40;;chr11:65687362..65687436,+!p3@DRAP1!0.88!31.74!DRAP1;;chr21:36260295..36260310,-!p3@RUNX1!0.88!10.99!RUNX1;;chr14:62162258..62162269,+!p2@HIF1A!0.86!63.47!HIF1A;;chr3:141087393..141087426,+!p3@ZBTB38!0.86!26.45!ZBTB38;;chr12:54447637..54447659,+!p4@HOXC4!0.85!6.10!HOXC4;;chr12:54447599..54447630,+!p3@HOXC4!0.84!7.32!HOXC4;;chr15:83953397..83953425,-!p1@BNC1!0.84!6.92!BNC1;;chr8:37963466..37963506,+!p3@ASH2L!0.83!7.32!ASH2L;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.70!BNC2;;chr11:46299539..46299620,+!p2@CREB3L1!0.82!9.76!CREB3L1;;chr7:44143997..44144008,+!p3@AEBP1!0.82!7.32!AEBP1;;chr14:62162285..62162296,+!p3@HIF1A!0.81!30.52!HIF1A;;chr8:37963407..37963454,+!p2@ASH2L!0.80!17.09!ASH2L;;chr7:44143978..44143989,+!p2@AEBP1!0.80!10.17!AEBP1;;chr7:27183191..27183214,-!p4@HOXA5!0.80!5.29!HOXA5;;chr11:32457075..32457095,-!p1@WT1!0.80!5.29!WT1;;chr10:63809106..63809127,+!p1@ARID5B!0.79!76.08!ARID5B;;chr1:151032922..151032951,+!p2@MLLT11!0.79!8.95!MLLT11;;chr18:19749386..19749404,+!p2@GATA6!0.79!7.73!GATA6;;chr3:25469724..25469773,+!p1@RARB!0.79!7.73!RARB;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.27!IFI16;;chr15:57511609..57511651,+!p2@TCF12!0.77!8.54!TCF12;;chr3:141121847..141121868,+!p5@ZBTB38!0.77!7.73!ZBTB38;;chr16:31076332..31076388,-!p3@ZNF668!0.77!4.88!ZNF668;;chr3:193853927..193853944,+!p1@HES1!0.76!173.33!HES1;;chr15:96874927..96874938,+!p8@NR2F2!0.75!10.58!NR2F2;;chr12:80085255..80085284,-!p9@PAWR!0.75!6.92!PAWR;;chr20:50179368..50179392,-!p2@NFATC2!0.75!6.10!NFATC2;;chr2:166326200..166326216,+!p1@CSRNP3!0.74!6.92!CSRNP3;;chr3:141087454..141087465,+!p19@ZBTB38!0.74!4.48!ZBTB38;;chr12:54422217..54422239,+!p3@HOXC6!0.74!4.48!HOXC6;;chr15:96869255..96869291,+!p6@NR2F2!0.72!8.14!NR2F2;;chr8:72756667..72756736,-!p2@MSC!0.72!6.92!MSC;;chr9:35732514..35732530,+!p5@CREB3!0.71!6.10!CREB3;;chr17:46622205..46622218,-!p3@HOXB2!0.71!4.88!HOXB2;;chr12:66218598..66218645,+!p2@HMGA2!0.70!20.75!HMGA2;;chr21:36260343..36260402,-!p6@RUNX1!0.70!6.92!RUNX1;;chr17:46622114..46622138,-!p4@HOXB2!0.70!6.51!HOXB2;;chr3:25470062..25470084,+!p4@RARB!0.70!4.07!RARB;;chr4:174451370..174451387,-!p1@HAND2!0.70!4.07!HAND2;;chr9:16728327..16728338,-!p5@BNC2!0.70!4.07!BNC2;;chr19:54058073..54058088,+!p1@ZNF331!0.70!4.07!ZNF331;;chr6:134210243..134210257,+!p1@TCF21!0.70!4.07!TCF21;;chr7:27170359..27170381,-!p1@HOXA4!0.70!4.07!HOXA4;;chr11:65687158..65687216,+!p4@DRAP1!0.68!24.41!DRAP1;;chr9:35732647..35732678,+!p2@CREB3!0.68!24.01!CREB3;;chr12:26277956..26277980,-!p1@BHLHE41!0.67!15.05!BHLHE41;;chr11:65687222..65687240,+!p7@DRAP1!0.67!4.88!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!0.67!3.66!RFX8;;chr3:141121820..141121838,+!p9@ZBTB38!0.67!3.66!ZBTB38;;chr9:96717629..96717644,-!p1@BARX1!0.67!3.66!BARX1;;chr7:44143925..44143970,+!p1@AEBP1!0.65!90.73!AEBP1;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.65!15.05!HNRPK;;chr21:36421535..36421610,-!p2@RUNX1!0.65!14.24!RUNX1;;chr9:2158443..2158481,+!p2@SMARCA2!0.65!10.99!SMARCA2;;chr9:14313893..14313908,-!p7@NFIB!0.65!5.29!NFIB;;chr17:46675420..46675465,-!p3@HOXB6!0.65!4.07!HOXB6;;chr1:158979792..158979814,+!p2@IFI16!0.64!37.43!IFI16;;chr15:96869114..96869160,+!p11@NR2F2!0.64!4.88!NR2F2;;chr8:106330656..106330684,+!p1@ZFPM2!0.63!9.76!ZFPM2;;chr1:158979851..158979865,+!p5@IFI16!0.63!8.14!IFI16;;chr1:170632250..170632277,+!p7@PRRX1!0.63!3.25!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!0.63!3.25!HOXB6;;chr11:46333934..46333963,+!p5@CREB3L1!0.63!3.25!CREB3L1;;chr7:27153454..27153469,-!p2@HOXA3!0.63!3.25!HOXA3;;chr7:27183325..27183338,-!p5@HOXA5!0.63!3.25!HOXA5;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:52901094..52901134,+!p1@ZNF528!0.17!8.14!ZNF528;;chr12:2986206..2986258,-!p2@FOXM1!0.17!7.32!FOXM1;;chr7:64838786..64838809,+!p2@ZNF92!0.17!6.92!ZNF92;;chrX:129402866..129402880,-!p1@ZNF280C!0.17!6.92!ZNF280C;;chr18:5296001..5296045,-!p1@ZFP161!0.17!4.48!ZFP161;;chr19:24097675..24097699,+!p1@ZNF726!0.17!3.66!ZNF726;;chr22:41697497..41697515,+!p2@ZC3H7B!0.17!2.85!ZC3H7B;;chr3:48282536..48282586,+!p2@ZNF589!0.17!2.85!ZNF589;;chr13:45011349..45011391,-!p4@TSC22D1!0.17!2.44!TSC22D1;;chr1:200379104..200379128,-!p2@ZNF281!0.17!2.44!ZNF281;;chr19:44331555..44331581,+!p2@ZNF283!0.17!2.03!ZNF283;;chr1:23696308..23696339,-!p2@ZNF436!0.17!2.03!ZNF436;;chr1:91487516..91487528,-!p4@ZNF644!0.17!2.03!ZNF644;;chr5:139487608..139487663,+!p3@PURA!0.17!2.03!PURA;;chr12:133562945..133562958,+!p2@ZNF26!0.17!1.63!ZNF26;;chr1:247171347..247171366,-!p2@ZNF695!0.17!1.63!ZNF695;;chr15:96874063..96874074,+!p10@NR2F2!0.17!1.63!NR2F2;;chr19:2841497..2841523,+!p2@ZNF555!0.17!1.63!ZNF555;;chr15:57211634..57211657,+!p5@TCF12!0.17!1.22!TCF12;;chr15:96874216..96874236,+!p13@NR2F2!0.17!1.22!NR2F2;;chr18:52989081..52989117,-!p7@TCF4!0.17!1.22!TCF4;;chr19:12444519..12444537,-!p3@ZNF563!0.17!1.22!ZNF563;;chr19:38042240..38042309,+!p2@ZNF540!0.17!1.22!ZNF540;;chr8:145159277..145159282,+!p7@MAF1!0.17!1.22!MAF1;;chr8:99956662..99956684,+!p1@OSR2!0.17!1.22!OSR2;;chr19:44669280..44669294,+!p4@ZNF226,p4@ZNF234!0.17!1.22!ZNF226;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.17!1.22!ZNF816;;chr15:37390374..37390422,-!p9@MEIS2!0.17!0.81!MEIS2;;chr15:77713281..77713290,+!p6@HMG20A!0.17!0.81!HMG20A;;chr18:3449618..3449634,+!p13@TGIF1!0.17!0.81!TGIF1;;chr19:10291229..10291247,-!p5@DNMT1!0.17!0.81!DNMT1;;chr19:14117148..14117157,-!p2@RFX1!0.17!0.81!RFX1;;chr3:5021026..5021035,+!p5@BHLHE40!0.17!0.81!BHLHE40;;chr8:124286761..124286773,-!p4@ZHX1!0.17!0.81!ZHX1;;chr8:72756023..72756055,-!p6@MSC!0.17!0.81!MSC;;chr12:7077134..7077154,-!p3@PHB2!0.17!0.81!PHB2;;chr3:141121164..141121249,+!p1@ZBTB38!0.16!21.97!ZBTB38;;chr12:104531945..104531996,-!p1@NFYB!0.16!17.50!NFYB;;chr6:34204973..34204990,+!p4@HMGA1!0.16!16.68!HMGA1;;chr22:30162924..30163005,-!p1@ZMAT5!0.16!15.46!ZMAT5;;chr1:78148324..78148365,-!p2@ZZZ3!0.16!11.80!ZZZ3;;chr7:64126503..64126528,+!p1@ZNF107!0.16!8.54!ZNF107;;chr22:38597987..38598021,+!p2@MAFF!0.16!7.32!MAFF;;chr19:36706055..36706074,+!p3@ZNF146!0.16!5.29!ZNF146;;chr12:27485823..27485868,+!p2@ARNTL2!0.16!4.48!ARNTL2;;chr1:117602932..117602973,+!p1@TTF2!0.16!4.07!TTF2;;chr4:1873011..1873063,+!p2@WHSC1!0.16!3.66!WHSC1;;chr19:44598534..44598559,+!p2@ZNF224!0.16!3.25!ZNF224;;chr1:164528445..164528459,+!p2@PBX1!0.16!3.25!PBX1;;chr1:44679159..44679189,+!p2@DMAP1!0.16!2.85!DMAP1;;chr19:37862054..37862110,+!p1@ZNF527!0.16!2.85!ZNF527;;chr17:46655730..46655791,-!p1@HOXB4!0.16!2.44!HOXB4;;chr7:99102592..99102620,+!p3@ZKSCAN5!0.16!2.03!ZKSCAN5;;chr19:50879683..50879695,+!p2@NR1H2!0.16!2.03!NR1H2;;chr19:52674898..52674931,-!p3@ZNF836!0.16!2.03!ZNF836;;chr10:76585205..76585251,+!p3@KAT6B!0.16!2.03!KAT6B;;chr19:11708311..11708332,+!p2@ZNF627!0.16!1.63!ZNF627;;chr19:22235279..22235301,+!p1@ZNF257!0.16!1.63!ZNF257;;chr9:3526360..3526421,-!p5@RFX3!0.16!1.63!RFX3;;chr1:61548374..61548415,+!p4@NFIA!0.16!1.63!NFIA;;chr6:31869828..31869880,-!p1@ZBTB12!0.16!1.63!ZBTB12;;chr8:42698494..42698507,-!p3@THAP1!0.16!1.63!THAP1;;chr8:73921067..73921078,+!p3@TERF1!0.16!1.22!TERF1;;chr12:8185346..8185360,+!p2@FOXJ2!0.16!1.22!FOXJ2;;chr11:62369806..62369837,-!p8@MTA2!0.16!0.81!MTA2;;chr6:21597431..21597447,+!p8@SOX4!0.16!0.81!SOX4;;
+|ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520right%2520ovary%252c%2520donor1.CNhs12373.11757-123H2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11757-123H2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000275
+|is_a=EFO:0002091;;FF:0000275
+|is_obsolete=
+|library_id=CNhs12373
+|library_id_phase_based=2:CNhs12373
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11757
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11757
 |name=mesenchymal precursor cell - ovarian cancer right ovary, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12373,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=123
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=35.03115
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 99: @@
 |sample_tissue=ovary
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11757-123H2;search_select_hide=table117:FF:11757-123H2
 }}

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FF:11757-123H2: Difference between revisions

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Latest revision as of 18:18, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0