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{{f5samples
{{f5samples
|id=FF:11700-123A8
|DRA_sample_Accession=CAGE@SAMD00005444
|name=Mesenchymal Stem Cells - umbilical, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005444
|sample_id=11700
|accession_numbers=CAGE;DRX008359;DRR009231;DRZ000656;DRZ002041;DRZ012006;DRZ013391
|rna_tube_id=123A8
|accession_numbers_RNASeq=sRNA-Seq;DRX037179;DRR041545;DRZ007187
|rna_box=123
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
|rna_position=A8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
|sample_cell_lot=lot:2045
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC7535
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=umbilical cord
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.6
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=mesenchymal stem cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.34
|sample_note=
|profile_hcage=CNhs12127,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10011,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002569
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000087,UBERON:0000091,UBERON:0000358,UBERON:0000465,UBERON:0000468,UBERON:0000478,UBERON:0000479,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002331,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003104,UBERON:0003422,UBERON:0004120,UBERON:0005423,UBERON:0005728,UBERON:0007806,UBERON:0008780,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000094,FF:0000001
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.63!428.91!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!2.01!268.38!TWIST1;;chr4:174451350..174451363,-!p3@HAND2!1.67!46.10!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.65!43.63!HOXA11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.63!41.99!HOXC5;;chr6:134210243..134210257,+!p1@TCF21!1.59!37.87!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.59!37.87!HIF3A;;chr4:111544219..111544240,-!p1@PITX2!1.58!37.05!PITX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.46!137.48!CREB3L1;;chr4:111558135..111558198,-!p2@PITX2!1.46!27.99!PITX2;;chr2:176969228..176969260,+!p1@HOXD11!1.45!27.17!HOXD11;;chr7:27224795..27224840,-!p2@HOXA11!1.45!27.17!HOXA11;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.40!PITX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.35!35.40!CREB3L1;;chr12:54378923..54378966,+!p1@HOXC10!1.32!19.76!HOXC10;;chr16:86544113..86544145,+!p1@FOXF1!1.29!23.05!FOXF1;;chr12:54402745..54402788,+!p1@HOXC8!1.28!18.11!HOXC8;;chr11:61520075..61520136,+!p1@C11orf9!1.24!34.58!C11orf9;;chr12:54379029..54379057,+!p2@HOXC10!1.20!14.82!HOXC10;;chr5:134369879..134369898,-!p2@PITX1!1.20!14.82!PITX1;;chr7:27205136..27205164,-!p1@HOXA9!1.18!14.00!HOXA9;;chr7:35293685..35293718,-!p1@TBX20!1.15!13.17!TBX20;;chr2:5832508..5832524,+!p1@SOX11!1.15!13.17!SOX11;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.17!HAND2;;chr12:54393880..54393962,+!p1@HOXC9!1.13!12.35!HOXC9;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.35!HOXB6;;chr7:27213893..27213954,-!p1@HOXA10!1.13!12.35!HOXA10;;chr5:92918919..92918942,+!p1@NR2F1!1.09!50.22!NR2F1;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.70!KDM5D;;chr5:92919100..92919135,+!p3@NR2F1!1.05!12.35!NR2F1;;chr2:176969179..176969226,+!p2@HOXD11!1.04!9.88!HOXD11;;chr8:49833948..49833973,-!p2@SNAI2!1.01!60.10!SNAI2;;chr11:63684602..63684664,-!p1@RCOR2!1.00!18.11!RCOR2;;chr7:27205106..27205134,-!p2@HOXA9!1.00!9.06!HOXA9;;chr2:176994408..176994492,+!p1@HOXD8!1.00!9.06!HOXD8;;chr8:48650715..48650735,-!p1@CEBPD!0.98!1104.79!CEBPD;;chr15:83953397..83953425,-!p1@BNC1!0.98!9.88!BNC1;;chrX:106960285..106960299,-!p1@TSC22D3!0.97!228.86!TSC22D3;;chr11:113930425..113930471,+!p1@ZBTB16!0.92!10.70!ZBTB16;;chr12:54402729..54402743,+!p3@HOXC8!0.92!7.41!HOXC8;;chr18:19749541..19749557,+!p1@GATA6!0.89!22.23!GATA6;;chr8:49833978..49833996,-!p1@SNAI2!0.88!142.42!SNAI2;;chr19:13134772..13134822,+!p2@NFIX!0.88!9.88!NFIX;;chr1:170633348..170633399,+!p2@PRRX1!0.88!9.06!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.86!16.46!TWIST1;;chr18:19749386..19749404,+!p2@GATA6!0.86!9.06!GATA6;;chr19:45260775..45260838,+!p5@BCL3!0.86!8.23!BCL3;;chr12:2986206..2986258,-!p2@FOXM1!0.85!38.69!FOXM1;;chr12:66218598..66218645,+!p2@HMGA2!0.84!28.81!HMGA2;;chr12:54380404..54380433,+!p3@HOXC10!0.83!5.76!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.83!5.76!HOXC5;;chr7:27192185..27192209,-!p1@HOXA3!0.83!5.76!HOXA3;;chr4:111558118..111558133,-!p5@PITX2!0.83!5.76!PITX2;;chr19:46800289..46800327,+!p2@HIF3A!0.83!5.76!HIF3A;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.83!5.76!SEBOX;;chr15:57511609..57511651,+!p2@TCF12!0.82!9.88!TCF12;;chr2:239756739..239756755,+!p2@TWIST2!0.82!9.88!TWIST2;;chr5:92918894..92918912,+!p2@NR2F1!0.81!18.93!NR2F1;;chr6:144329384..144329405,-!p1@PLAGL1!0.80!66.68!PLAGL1;;chr16:86600426..86600441,+!p1@FOXC2!0.80!14.00!FOXC2;;chr6:85473156..85473210,-!p2@TBX18!0.80!6.59!TBX18;;chr12:115121962..115121987,-!p1@TBX3!0.79!46.92!TBX3;;chr1:247171347..247171366,-!p2@ZNF695!0.79!9.88!ZNF695;;chr20:50721803..50721857,-!p2@ZFP64!0.78!8.23!ZFP64;;chr1:170632285..170632309,+!p1@PRRX1!0.78!5.76!PRRX1;;chr2:121493425..121493474,+!p1@GLI2!0.77!11.53!GLI2;;chr5:92920456..92920488,+!p9@NR2F1!0.77!5.76!NR2F1;;chr12:54384370..54384382,+!p5@HOXC6!0.77!4.94!HOXC6;;chr12:54422217..54422239,+!p3@HOXC6!0.77!4.94!HOXC6;;chr5:176738887..176738934,-!p1@MXD3!0.76!34.58!MXD3;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.35!RUNX2;;chr1:247171316..247171336,-!p3@ZNF695!0.76!7.41!ZNF695;;chr17:59477233..59477263,+!p1@TBX2!0.75!15.64!TBX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.75!4.94!GLIS1;;chr1:23885981..23886002,-!p1@ID3!0.74!882.51!ID3;;chr11:65686802..65686818,+!p6@DRAP1!0.74!8.23!DRAP1;;chr9:77112244..77112262,+!p1@RORB!0.73!4.94!RORB;;chr2:239756671..239756732,+!p1@TWIST2!0.71!14.82!TWIST2;;chr12:115122318..115122331,-!p2@TBX3!0.71!4.12!TBX3;;chr17:46675469..46675481,-!p4@HOXB6!0.71!4.12!HOXB6;;chr17:46675558..46675577,-!p2@HOXB6!0.71!4.12!HOXB6;;chr6:45390269..45390298,+!p5@RUNX2!0.67!6.59!RUNX2;;chr16:54320617..54320643,-!p3@IRX3!0.67!4.94!IRX3;;chr5:92918860..92918871,+!p10@NR2F1!0.67!4.12!NR2F1;;chr5:92918956..92918969,+!p4@NR2F1!0.67!4.12!NR2F1;;chr2:66662281..66662308,+!p1@MEIS1!0.66!14.00!MEIS1;;chr17:59477197..59477212,+!p2@TBX2!0.66!6.59!TBX2;;chr1:8926441..8926473,-!p10@ENO1!0.66!5.76!ENO1;;chr5:92919068..92919082,+!p5@NR2F1!0.64!4.12!NR2F1;;chr11:47236584..47236679,+!p1@DDB2!0.63!41.99!DDB2;;chr11:47279504..47279563,+!p1@NR1H3!0.63!8.23!NR1H3;;chr17:4662207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IS2;;chr19:36545128..36545203,-!p1@THAP8!0.19!5.76!THAP8;;chr16:2059797..2059837,-!p1@ZNF598!0.19!4.94!ZNF598;;chr17:42297028..42297056,-!p3@UBTF!0.19!4.94!UBTF;;chr19:1652555..1652568,-!p2@TCF3!0.19!4.94!TCF3;;chr12:57504975..57505019,-!p2@STAT6!0.19!4.94!STAT6;;chr14:73360799..73360817,-!p1@DPF3!0.19!4.12!DPF3;;chr19:11071652..11071682,+!p3@SMARCA4!0.19!4.12!SMARCA4;;chr19:47615426..47615439,-!p5@ZC3H4!0.19!2.47!ZC3H4;;chr6:144329500..144329526,-!p4@PLAGL1!0.19!2.47!PLAGL1;;chr16:29817399..29817425,+!p13@MAZ!0.19!1.65!MAZ;;chr19:13134457..13134462,+!p5@NFIX!0.19!1.65!NFIX;;chr1:16302608..16302621,-!p2@ZBTB17!0.19!1.65!ZBTB17;;chr1:45805735..45805743,+!p7@TOE1!0.19!0.82!TOE1;;chr1:6845598..6845601,+!p5@CAMTA1!0.19!0.82!CAMTA1;;chr8:128752734..128752763,+!p13@MYC!0.19!0.82!MYC;;chr15:96869222..96869251,+!p18@NR2F2!0.19!0.82!NR2F2;;chr18:72922858..72922897,+!p4@TSHZ1!0.19!0.82!TSHZ1;;chr2:178129518..178129533,-!p10@NFE2L2!0.19!0.82!NFE2L2;;chr2:219524193..219524205,-!p3@ZNF142!0.19!0.82!ZNF142;;chr3:75834722..75834733,-!p2@ZNF717!0.19!0.82!ZNF717;;chr4:81104958..81104981,+!p5@PRDM8!0.19!0.82!PRDM8;;chr22:42229100..42229146,+!p1@SREBF2!0.18!136.66!SREBF2;;chr13:27998720..27998826,+!p1@GTF3A!0.18!128.43!GTF3A;;chr13:115079949..115080022,+!p1@CHAMP1!0.18!37.05!CHAMP1;;chr19:15543484..15543561,-!p1@WIZ!0.18!30.46!WIZ;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.18!8.23!SOX7;;chr17:38498402..38498445,+!p3@RARA!0.18!4.12!RARA;;chr1:40915725..40915808,+!p1@ZNF643!0.18!3.29!ZNF643;;chr15:66994561..66994597,+!p2@SMAD6!0.18!2.47!SMAD6;;chr2:46524474..46524491,+!p4@EPAS1!0.18!2.47!EPAS1;;chr12:133758115..133758138,+!p3@ZNF268!0.18!2.47!ZNF268;;chr16:30621615..30621660,-!p2@ZNF689!0.18!1.65!ZNF689;;chr16:73092791..73092831,-!p4@ZFHX3!0.18!1.65!ZFHX3;;chrX:70316005..70316034,+!p2@FOXO4!0.18!1.65!FOXO4;;chr7:6676930..6676939,+!p3@ENST00000427912!0.18!1.65!ZNF316;;chr5:124082279..124082319,-!p3@ZNF608!0.18!0.82!ZNF608;;chr5:92920256..92920282,+!p7@NR2F1!0.18!0.82!NR2F1;;chr6:108882076..108882087,+!p6@FOXO3!0.18!0.82!FOXO3;;chr6:144385698..144385742,-!p2@PLAGL1!0.18!0.82!PLAGL1;;chr7:17369649..17369664,+!p4@AHR!0.18!0.82!AHR;;chr8:28243785..28243799,-!p6@ZNF395!0.18!0.82!ZNF395;;chr15:37392576..37392589,-!p12@MEIS2!0.18!0.82!MEIS2;;chr19:37861994..37862013,+!p2@ZNF527!0.18!0.82!ZNF527;;chr10:3818891..3818895,-!p6@KLF6!0.18!0.82!KLF6;;chr11:19263192..19263222,-!p2@E2F8!0.18!0.82!E2F8;;chr12:51611694..51611719,-!p2@POU6F1!0.18!0.82!POU6F1;;chr12:66218003..66218018,+!p9@HMGA2!0.18!0.82!HMGA2;;chr19:4067174..4067200,-!p9@ZBTB7A!0.18!0.82!ZBTB7A;;chr1:151319318..151319338,-!p3@RFX5!0.18!0.82!RFX5;;chr1:41204530..41204541,+!p8@NFYC!0.18!0.82!NFYC;;chr20:48807548..48807572,+!p14@CEBPB!0.18!0.82!CEBPB;;chr3:141105705..141105770,+!p4@ZBTB38!0.18!0.82!ZBTB38;;chr3:141121369..141121392,+!p14@ZBTB38!0.18!0.82!ZBTB38;;chr4:81104985..81105005,+!p4@PRDM8!0.18!0.82!PRDM8;;chr2:46524537..46524553,+!p1@EPAS1!0.17!133.36!EPAS1;;chr22:41697520..41697613,+!p1@ZC3H7B!0.17!75.74!ZC3H7B;;chr11:62369229..62369289,-!p2@MTA2!0.17!18.93!MTA2;;chr12:122516646..122516668,+!p1@MLXIP!0.17!17.29!MLXIP;;chr22:31742303..31742350,-!p1@PATZ1!0.17!14.00!PATZ1;;chr14:102786063..102786112,+!p1@ZNF839!0.17!9.06!ZNF839;;chr7:148892629..148892651,+!p2@ZNF282!0.17!7.41!ZNF282;;chr12:72058130..72058189,+!p2@THAP2!0.17!4.94!THAP2;;chr17:41623692..41623715,-!p1@ETV4!0.17!4.94!ETV4;;chr9:35732561..35732587,+!p3@CREB3!0.17!4.94!CREB3;;chr17:41277372..41277418,-!p1@BRCA1!0.17!4.12!BRCA1;;chr1:153895251..153895342,-!p2@GATAD2B!0.17!4.12!GATAD2B;;chr19:58071166..58071189,-!p2@ZNF550!0.17!2.47!ZNF550;;chr20:3388207..3388236,-!p4@C20orf194!0.17!2.47!C20orf194;;chr22:46546406..46546440,+!p1@PPARA!0.17!2.47!PPARA;;chr2:242576431..242576458,-!p3@THAP4!0.17!2.47!THAP4;;chr3:12329358..12329393,+!p3@PPARG!0.17!2.47!PPARG;;chr18:3450293..3450304,+!p4@TGIF1!0.17!2.47!TGIF1;;chr15:56535468..56535521,-!p2@RFX7!0.17!1.65!RFX7;;chr14:100705587..100705600,+!p5@YY1!0.17!1.65!YY1;;chr2:46524506..46524514,+!p5@EPAS1!0.17!1.65!EPAS1;;chr9:3526360..3526421,-!p5@RFX3!0.17!1.65!RFX3;;chrX:152599653..152599662,+!p3@ZNF275!0.17!0.82!ZNF275;;chr9:2017365..2017380,+!p9@SMARCA2!0.17!0.82!SMARCA2;;chr15:37390374..37390422,-!p9@MEIS2!0.17!0.82!MEIS2;;chr16:29818992..29819023,+!p24@MAZ!0.17!0.82!MAZ;;chr17:2304082..2304103,-!p5@MNT!0.17!0.82!MNT;;chr17:7370612..7370625,-!p9@ZBTB4!0.17!0.82!ZBTB4;;chr18:45457909..45457939,-!p8@SMAD2!0.17!0.82!SMAD2;;chr19:35417939..35417963,+!p3@ZNF30!0.17!0.82!ZNF30;;chr19:48774586..48774670,+!p1@ZNF114!0.17!0.82!ZNF114;;chr8:116681108..116681120,-!p9@TRPS1!0.17!0.82!TRPS1;;chr8:116681275..116681290,-!p11@TRPS1!0.17!0.82!TRPS1;;chr3:150126200..150126211,+!p11@TSC22D2!0.17!0.82!TSC22D2;;chr11:19262486..19262512,-!p4@E2F8!0.17!0.82!E2F8;;chr11:8102819..8102845,+!p3@TUB!0.17!0.82!TUB;;chr12:7077134..7077154,-!p3@PHB2!0.17!0.82!PHB2;;chr12:80083807..80083859,-!p11@PAWR!0.17!0.82!PAWR;;chr17:46126136..46126152,+!p1@NFE2L1!0.16!66.68!NFE2L1;;chr12:57916584..57916682,+!p1@MBD6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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
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|creation_date=
|def=
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|is_a=EFO:0002091;;FF:0000002;;FF:0000094;;FF:0000210
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg38.nobarcode.ctss.bed.gz
|id=FF:11700-123A8
|is_a=EFO:0002091;;FF:0000094
|is_obsolete=
|library_id=CNhs12127
|library_id_phase_based=2:CNhs12127
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11700
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.GTTTCG.11700
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11700
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.GTTTCG.11700
|name=Mesenchymal Stem Cells - umbilical, donor3
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
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|profile_cagescan=,,,
|profile_hcage=CNhs12127,LSID839,release011,COMPLETED
|profile_rnaseq=
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|rna_box=123
|rna_catalog_number=SC7535
|rna_concentration=1.34
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=A8
|rna_rin=9.6
|rna_sample_type=total RNA
|rna_tube_id=123A8
|rna_weight_ug=10
|rnaseq_library_id=SRhi10011.GTTTCG
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=lot:2045
|sample_cell_type=mesenchymal stem cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.17908470496444e-222!GO:0005737;cytoplasm;7.08819323778482e-194!GO:0043231;intracellular membrane-bound organelle;6.96387704030874e-178!GO:0043226;organelle;6.96387704030874e-178!GO:0043229;intracellular organelle;1.04248409598076e-177!GO:0043227;membrane-bound organelle;1.69022410982052e-177!GO:0044444;cytoplasmic part;1.93861309868191e-148!GO:0044422;organelle part;3.90008422675611e-146!GO:0044446;intracellular organelle part;5.59969262294585e-145!GO:0032991;macromolecular complex;5.24004301221954e-92!GO:0030529;ribonucleoprotein complex;4.52755909248031e-87!GO:0044237;cellular metabolic process;8.57866173002481e-86!GO:0044238;primary metabolic process;5.72439923156567e-84!GO:0005739;mitochondrion;1.7240703211243e-82!GO:0043233;organelle lumen;9.19151606242066e-71!GO:0031974;membrane-enclosed lumen;9.19151606242066e-71!GO:0043170;macromolecule metabolic process;2.53957130822241e-70!GO:0005515;protein binding;4.11615762943062e-62!GO:0044428;nuclear part;8.14186601076882e-62!GO:0003723;RNA binding;3.31022237656529e-59!GO:0005840;ribosome;2.61999623992671e-58!GO:0005634;nucleus;4.77649479497642e-56!GO:0031090;organelle membrane;9.85903830294299e-55!GO:0044429;mitochondrial part;2.21915582271923e-54!GO:0009058;biosynthetic process;4.06527498792742e-53!GO:0003735;structural constituent of ribosome;1.02355118348995e-51!GO:0006412;translation;4.83180406862108e-51!GO:0044249;cellular biosynthetic process;3.97029944222687e-47!GO:0019538;protein metabolic process;1.84705384324821e-45!GO:0043234;protein complex;9.00223657132809e-45!GO:0031967;organelle envelope;3.92528721428062e-44!GO:0009059;macromolecule biosynthetic process;6.64608901962876e-44!GO:0031975;envelope;8.95202889091703e-44!GO:0033279;ribosomal subunit;1.42276138601567e-43!GO:0006396;RNA processing;7.16315179202433e-42!GO:0044260;cellular macromolecule metabolic process;7.43877362630282e-41!GO:0016043;cellular component organization and biogenesis;4.01819344267843e-40!GO:0044267;cellular protein metabolic process;8.0264851938794e-40!GO:0005829;cytosol;7.64060123309881e-38!GO:0031981;nuclear lumen;4.02008120269322e-37!GO:0005740;mitochondrial envelope;7.17190099908486e-36!GO:0033036;macromolecule localization;4.4763481897531e-34!GO:0015031;protein transport;6.43650447280335e-34!GO:0031966;mitochondrial membrane;1.17286590793185e-33!GO:0016071;mRNA metabolic process;1.09329421656502e-32!GO:0043283;biopolymer metabolic process;2.71361870579752e-32!GO:0019866;organelle inner membrane;5.15204931660835e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.01622487039548e-31!GO:0043228;non-membrane-bound organelle;1.46884503811219e-31!GO:0043232;intracellular non-membrane-bound organelle;1.46884503811219e-31!GO:0008104;protein localization;2.45427943450498e-31!GO:0045184;establishment of protein localization;3.08782582249368e-31!GO:0005743;mitochondrial inner membrane;1.30879897683348e-30!GO:0010467;gene expression;2.55608238118974e-30!GO:0065003;macromolecular complex assembly;2.75950927600576e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.04215989654519e-30!GO:0006259;DNA metabolic process;4.0978039093155e-29!GO:0008380;RNA splicing;5.93911069309481e-29!GO:0006996;organelle organization and biogenesis;7.03414530372093e-29!GO:0006397;mRNA processing;2.97396128876094e-28!GO:0046907;intracellular transport;5.69050368038398e-28!GO:0022607;cellular component assembly;1.03802155253054e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.42371033826831e-24!GO:0044445;cytosolic part;1.57555211771193e-24!GO:0031980;mitochondrial lumen;1.38361293507183e-23!GO:0005759;mitochondrial matrix;1.38361293507183e-23!GO:0044455;mitochondrial membrane part;1.75307914800664e-23!GO:0005783;endoplasmic reticulum;3.5851403845002e-23!GO:0005681;spliceosome;6.40786767882377e-23!GO:0006886;intracellular protein transport;7.45676164618882e-23!GO:0006119;oxidative phosphorylation;8.70362827314689e-23!GO:0005654;nucleoplasm;1.19271470271681e-22!GO:0015935;small ribosomal subunit;2.26926772513837e-22!GO:0015934;large ribosomal subunit;2.64242115470133e-22!GO:0007049;cell cycle;2.04865272868806e-21!GO:0006457;protein folding;3.30134526229539e-21!GO:0012505;endomembrane system;6.16959375548344e-21!GO:0044432;endoplasmic reticulum part;6.55783112621515e-20!GO:0051186;cofactor metabolic process;7.05537023601838e-20!GO:0005746;mitochondrial respiratory chain;2.45784773065729e-19!GO:0000166;nucleotide binding;7.80869261886256e-19!GO:0044451;nucleoplasm part;1.88509550998527e-18!GO:0016462;pyrophosphatase activity;3.62333341866904e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.46045559169834e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;7.68162616704228e-18!GO:0017111;nucleoside-triphosphatase activity;1.94627205774756e-17!GO:0051649;establishment of cellular localization;2.49004700385553e-17!GO:0048770;pigment granule;2.49004700385553e-17!GO:0042470;melanosome;2.49004700385553e-17!GO:0051641;cellular localization;5.23069201059969e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.19767773129049e-17!GO:0022402;cell cycle process;8.93523373444274e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.25937447369685e-16!GO:0003954;NADH dehydrogenase activity;1.25937447369685e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.25937447369685e-16!GO:0000278;mitotic cell cycle;1.950615714237e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.03293406633765e-16!GO:0005794;Golgi apparatus;3.81327092426825e-16!GO:0005761;mitochondrial ribosome;7.81997032491912e-16!GO:0000313;organellar ribosome;7.81997032491912e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.12068037199756e-15!GO:0016874;ligase activity;1.25923394507608e-15!GO:0006732;coenzyme metabolic process;1.67875978339806e-15!GO:0005730;nucleolus;3.10898757074784e-15!GO:0022618;protein-RNA complex assembly;6.3137540957698e-15!GO:0042775;organelle ATP synthesis coupled electron transport;9.11251233304585e-15!GO:0042773;ATP synthesis coupled electron transport;9.11251233304585e-15!GO:0044248;cellular catabolic process;1.32329869209054e-14!GO:0051082;unfolded protein binding;1.48375973053751e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.81667720855896e-14!GO:0045271;respiratory chain complex I;1.81667720855896e-14!GO:0005747;mitochondrial respiratory chain complex I;1.81667720855896e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.49312069747804e-14!GO:0006974;response to DNA damage stimulus;2.98651188502588e-14!GO:0003676;nucleic acid binding;4.17658273395992e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.99362616362016e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.2524199642611e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.01140845049773e-13!GO:0005789;endoplasmic reticulum membrane;1.22279712124748e-13!GO:0017076;purine nucleotide binding;3.09654730217656e-13!GO:0032553;ribonucleotide binding;3.23833767769098e-13!GO:0032555;purine ribonucleotide binding;3.23833767769098e-13!GO:0044265;cellular macromolecule catabolic process;3.23833767769098e-13!GO:0008134;transcription factor binding;3.95170288032369e-13!GO:0022403;cell cycle phase;1.05954812395665e-12!GO:0008135;translation factor activity, nucleic acid binding;1.6601743240562e-12!GO:0051276;chromosome organization and biogenesis;1.98730228160732e-12!GO:0006281;DNA repair;2.12721758016148e-12!GO:0009055;electron carrier activity;2.42054014992861e-12!GO:0009057;macromolecule catabolic process;3.16055687400077e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;3.55959426381216e-12!GO:0000375;RNA splicing, via transesterification reactions;3.55959426381216e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.55959426381216e-12!GO:0005694;chromosome;4.33717541052626e-12!GO:0006605;protein targeting;5.44637161656355e-12!GO:0048193;Golgi vesicle transport;7.23462420717128e-12!GO:0043285;biopolymer catabolic process;8.42084268658478e-12!GO:0006512;ubiquitin cycle;1.26375468062169e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.5564157979448e-11!GO:0044427;chromosomal part;1.70344734892487e-11!GO:0005524;ATP binding;2.61640088635601e-11!GO:0000087;M phase of mitotic cell cycle;2.75809354985418e-11!GO:0007067;mitosis;3.46366774046945e-11!GO:0009719;response to endogenous stimulus;4.40833284687998e-11!GO:0006260;DNA replication;4.40833284687998e-11!GO:0032559;adenyl ribonucleotide binding;4.851599560621e-11!GO:0006399;tRNA metabolic process;5.387661036496e-11!GO:0016491;oxidoreductase activity;5.54080130784283e-11!GO:0006323;DNA packaging;6.25144291654834e-11!GO:0030554;adenyl nucleotide binding;6.25144291654834e-11!GO:0051188;cofactor biosynthetic process;9.20235743113683e-11!GO:0005793;ER-Golgi intermediate compartment;1.36039752370886e-10!GO:0065004;protein-DNA complex assembly;3.27544309026664e-10!GO:0042623;ATPase activity, coupled;4.09318785291031e-10!GO:0042254;ribosome biogenesis and assembly;4.27459062649612e-10!GO:0016070;RNA metabolic process;6.24512434318828e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;6.6273430738947e-10!GO:0003743;translation initiation factor activity;7.33132641914816e-10!GO:0016887;ATPase activity;8.12608714016566e-10!GO:0019941;modification-dependent protein catabolic process;1.04948873971194e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.04948873971194e-09!GO:0044257;cellular protein catabolic process;1.19033148730959e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.1910771015441e-09!GO:0043412;biopolymer modification;1.35241960547146e-09!GO:0006163;purine nucleotide metabolic process;1.46711294680227e-09!GO:0016192;vesicle-mediated transport;1.47655039960608e-09!GO:0006511;ubiquitin-dependent protein catabolic process;1.56728799558085e-09!GO:0006333;chromatin assembly or disassembly;1.56728799558085e-09!GO:0005635;nuclear envelope;1.60622098136009e-09!GO:0000074;regulation of progression through cell cycle;2.02947886543684e-09!GO:0051726;regulation of cell cycle;2.12721786167902e-09!GO:0051301;cell division;2.51132034055069e-09!GO:0009259;ribonucleotide metabolic process;2.70281798840226e-09!GO:0006413;translational initiation;3.34271447172719e-09!GO:0000279;M phase;4.41301060919418e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.5802107411516e-09!GO:0009150;purine ribonucleotide metabolic process;6.51092829947292e-09!GO:0030163;protein catabolic process;6.75652200671676e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.75652200671676e-09!GO:0006164;purine nucleotide biosynthetic process;6.92584738888837e-09!GO:0005788;endoplasmic reticulum lumen;7.28659020130791e-09!GO:0016604;nuclear body;8.46734883701186e-09!GO:0006334;nucleosome assembly;8.92858142309658e-09!GO:0031965;nuclear membrane;9.03089064055447e-09!GO:0009056;catabolic process;1.09216014098034e-08!GO:0006913;nucleocytoplasmic transport;1.42783433313044e-08!GO:0000785;chromatin;1.73003348730687e-08!GO:0003712;transcription cofactor activity;1.83160043983162e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.83160043983162e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.83160043983162e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.83160043983162e-08!GO:0012501;programmed cell death;1.83160043983162e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.92397751526292e-08!GO:0008565;protein transporter activity;1.92615962645128e-08!GO:0016740;transferase activity;2.01058362322535e-08!GO:0044453;nuclear membrane part;2.32449783200105e-08!GO:0009260;ribonucleotide biosynthetic process;2.77175994199282e-08!GO:0006446;regulation of translational initiation;2.77175994199282e-08!GO:0051169;nuclear transport;2.98300401372221e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.9852710818489e-08!GO:0031497;chromatin assembly;3.05224252634708e-08!GO:0006464;protein modification process;3.26172314493893e-08!GO:0006461;protein complex assembly;3.35347160638086e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.45142258147052e-08!GO:0009060;aerobic respiration;3.57159965722401e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.61743719462153e-08!GO:0009141;nucleoside triphosphate metabolic process;3.82807296880954e-08!GO:0009108;coenzyme biosynthetic process;3.98354723771746e-08!GO:0006915;apoptosis;4.31498107999107e-08!GO:0043038;amino acid activation;4.76150582196456e-08!GO:0006418;tRNA aminoacylation for protein translation;4.76150582196456e-08!GO:0043039;tRNA aminoacylation;4.76150582196456e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.13990078712413e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.13990078712413e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.71122513370119e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.71122513370119e-08!GO:0006091;generation of precursor metabolites and energy;7.95413209329301e-08!GO:0065002;intracellular protein transport across a membrane;1.31788579989405e-07!GO:0009117;nucleotide metabolic process;1.32114413752875e-07!GO:0017038;protein import;1.33581418920129e-07!GO:0015986;ATP synthesis coupled proton transport;1.41033773891285e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.41033773891285e-07!GO:0045333;cellular respiration;1.4190749317207e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.42160656529746e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.42160656529746e-07!GO:0016853;isomerase activity;1.47517326634708e-07!GO:0008219;cell death;2.43384977877769e-07!GO:0016265;death;2.43384977877769e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.75926589154668e-07!GO:0016779;nucleotidyltransferase activity;2.90201656253943e-07!GO:0008026;ATP-dependent helicase activity;3.18689323085695e-07!GO:0019829;cation-transporting ATPase activity;3.36629311622828e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.49238446998445e-07!GO:0008639;small protein conjugating enzyme activity;4.41268556200244e-07!GO:0030120;vesicle coat;4.5551465596551e-07!GO:0030662;coated vesicle membrane;4.5551465596551e-07!GO:0007005;mitochondrion organization and biogenesis;4.83587187059602e-07!GO:0004386;helicase activity;5.59086807690461e-07!GO:0046034;ATP metabolic process;5.711403855483e-07!GO:0048475;coated membrane;6.24895079337121e-07!GO:0030117;membrane coat;6.24895079337121e-07!GO:0006364;rRNA processing;6.84095334699431e-07!GO:0003697;single-stranded DNA binding;7.49445004745093e-07!GO:0044431;Golgi apparatus part;8.0651100753438e-07!GO:0015630;microtubule cytoskeleton;8.08528460386138e-07!GO:0048523;negative regulation of cellular process;8.13941670194591e-07!GO:0006099;tricarboxylic acid cycle;9.20051986332006e-07!GO:0046356;acetyl-CoA catabolic process;9.20051986332006e-07!GO:0004842;ubiquitin-protein ligase activity;9.84743855873623e-07!GO:0051329;interphase of mitotic cell cycle;9.84743855873623e-07!GO:0045259;proton-transporting ATP synthase complex;1.02907795320924e-06!GO:0016072;rRNA metabolic process;1.04543313004819e-06!GO:0006084;acetyl-CoA metabolic process;1.10571126853093e-06!GO:0006754;ATP biosynthetic process;1.10571126853093e-06!GO:0006753;nucleoside phosphate metabolic process;1.10571126853093e-06!GO:0006366;transcription from RNA polymerase II promoter;1.14700071370543e-06!GO:0016787;hydrolase activity;1.21831141571721e-06!GO:0016607;nuclear speck;1.34483687502262e-06!GO:0005643;nuclear pore;1.3660434761847e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.52343546484396e-06!GO:0051187;cofactor catabolic process;1.760819279467e-06!GO:0006752;group transfer coenzyme metabolic process;1.98112880890925e-06!GO:0019787;small conjugating protein ligase activity;1.98112880890925e-06!GO:0043687;post-translational protein modification;2.20580013927597e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.44108474258134e-06!GO:0009109;coenzyme catabolic process;2.60025451012213e-06!GO:0008654;phospholipid biosynthetic process;2.67362091620234e-06!GO:0051325;interphase;2.69511618132674e-06!GO:0003924;GTPase activity;3.65246528574645e-06!GO:0005762;mitochondrial large ribosomal subunit;3.75302562545338e-06!GO:0000315;organellar large ribosomal subunit;3.75302562545338e-06!GO:0016859;cis-trans isomerase activity;4.50815870764584e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.64012608287487e-06!GO:0045454;cell redox homeostasis;5.39431189338513e-06!GO:0016568;chromatin modification;5.44143392180859e-06!GO:0005667;transcription factor complex;5.71135779076062e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.30295632634529e-06!GO:0046930;pore complex;6.59448345846671e-06!GO:0044262;cellular carbohydrate metabolic process;7.15078276073252e-06!GO:0000245;spliceosome assembly;8.90242455017642e-06!GO:0016881;acid-amino acid ligase activity;1.01362910402964e-05!GO:0005768;endosome;1.0786238449915e-05!GO:0008610;lipid biosynthetic process;1.64078037340776e-05!GO:0000139;Golgi membrane;1.64078037340776e-05!GO:0048519;negative regulation of biological process;1.68245318541901e-05!GO:0016564;transcription repressor activity;1.88107125221279e-05!GO:0031324;negative regulation of cellular metabolic process;1.88573085126666e-05!GO:0051246;regulation of protein metabolic process;2.0372682124664e-05!GO:0043067;regulation of programmed cell death;2.44243711807484e-05!GO:0043566;structure-specific DNA binding;2.44336567493282e-05!GO:0006082;organic acid metabolic process;2.58619938738472e-05!GO:0019843;rRNA binding;2.69553564343055e-05!GO:0042981;regulation of apoptosis;2.87119540945008e-05!GO:0050657;nucleic acid transport;3.0970206567615e-05!GO:0051236;establishment of RNA localization;3.0970206567615e-05!GO:0050658;RNA transport;3.0970206567615e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.11777020199414e-05!GO:0019752;carboxylic acid metabolic process;3.18526989823758e-05!GO:0003714;transcription corepressor activity;3.56096619476323e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.56096619476323e-05!GO:0004298;threonine endopeptidase activity;3.67353392687808e-05!GO:0006403;RNA localization;3.74727310948443e-05!GO:0043623;cellular protein complex assembly;3.81812143469255e-05!GO:0030867;rough endoplasmic reticulum membrane;3.97318487066029e-05!GO:0030176;integral to endoplasmic reticulum membrane;4.25413156835006e-05!GO:0000314;organellar small ribosomal subunit;4.3791082236416e-05!GO:0005763;mitochondrial small ribosomal subunit;4.3791082236416e-05!GO:0005798;Golgi-associated vesicle;4.39314415645978e-05!GO:0003899;DNA-directed RNA polymerase activity;4.5513085952772e-05!GO:0005819;spindle;4.68861815135466e-05!GO:0031988;membrane-bound vesicle;5.18040952770325e-05!GO:0051789;response to protein stimulus;5.43754753223753e-05!GO:0006986;response to unfolded protein;5.43754753223753e-05!GO:0005813;centrosome;5.71819584727431e-05!GO:0031968;organelle outer membrane;5.7819152702546e-05!GO:0000786;nucleosome;5.82305765257521e-05!GO:0005770;late endosome;5.94953446161704e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.29309314450381e-05!GO:0051170;nuclear import;6.40612055771312e-05!GO:0019867;outer membrane;6.42548841058566e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.91321734325445e-05!GO:0016563;transcription activator activity;7.0151699765525e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.31576332837669e-05!GO:0043069;negative regulation of programmed cell death;7.86409477686344e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.98572388617428e-05!GO:0031252;leading edge;8.86406280459527e-05!GO:0006916;anti-apoptosis;8.89114414906424e-05!GO:0045786;negative regulation of progression through cell cycle;9.12573851249785e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;9.40680094489397e-05!GO:0043066;negative regulation of apoptosis;0.000106409287498581!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000107243499646589!GO:0033116;ER-Golgi intermediate compartment membrane;0.000107715848780011!GO:0005773;vacuole;0.000113040610810117!GO:0006613;cotranslational protein targeting to membrane;0.000115897798424888!GO:0016126;sterol biosynthetic process;0.000116413858609586!GO:0005791;rough endoplasmic reticulum;0.000116413858609586!GO:0005525;GTP binding;0.000132513699716676!GO:0005815;microtubule organizing center;0.00013404624438965!GO:0006606;protein import into nucleus;0.00013404624438965!GO:0005741;mitochondrial outer membrane;0.000144161241604776!GO:0009165;nucleotide biosynthetic process;0.00015560676893558!GO:0044440;endosomal part;0.000170277196890886!GO:0010008;endosome membrane;0.000170277196890886!GO:0030133;transport vesicle;0.000174728729241549!GO:0046474;glycerophospholipid biosynthetic process;0.000174826301631997!GO:0008033;tRNA processing;0.00020649540743324!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000210339476307912!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00022693855059643!GO:0003724;RNA helicase activity;0.000227070068997482!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000246883995861376!GO:0009892;negative regulation of metabolic process;0.0002486788637515!GO:0043681;protein import into mitochondrion;0.000250572616702554!GO:0006261;DNA-dependent DNA replication;0.000261274058421713!GO:0032446;protein modification by small protein conjugation;0.000268591039573975!GO:0031410;cytoplasmic vesicle;0.000272964587868217!GO:0006626;protein targeting to mitochondrion;0.000299487270850105!GO:0031982;vesicle;0.000306141185935268!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000341894997546618!GO:0016567;protein ubiquitination;0.000369743657362985!GO:0003713;transcription coactivator activity;0.000390749680384832!GO:0008361;regulation of cell size;0.000431504917748753!GO:0051427;hormone receptor binding;0.000434439081535552!GO:0005048;signal sequence binding;0.000449248007326177!GO:0008094;DNA-dependent ATPase activity;0.000453907510728045!GO:0008250;oligosaccharyl transferase complex;0.000471881157771411!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000472049846227733!GO:0006520;amino acid metabolic process;0.000472279071738531!GO:0016049;cell growth;0.000480433299539949!GO:0006793;phosphorus metabolic process;0.000501560325645392!GO:0006796;phosphate metabolic process;0.000501560325645392!GO:0051028;mRNA transport;0.000515594976882849!GO:0046483;heterocycle metabolic process;0.000562909821032116!GO:0005905;coated pit;0.000586607095664268!GO:0043284;biopolymer biosynthetic process;0.000600855078886837!GO:0043021;ribonucleoprotein binding;0.000612667347924482!GO:0000323;lytic vacuole;0.000620775971323836!GO:0005764;lysosome;0.000620775971323836!GO:0046467;membrane lipid biosynthetic process;0.000723653292714879!GO:0005885;Arp2/3 protein complex;0.000801026325198379!GO:0016310;phosphorylation;0.00083871661794756!GO:0035257;nuclear hormone receptor binding;0.000843894032804168!GO:0051920;peroxiredoxin activity;0.000870422912987542!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000870422912987542!GO:0015399;primary active transmembrane transporter activity;0.000870422912987542!GO:0032561;guanyl ribonucleotide binding;0.000901603024888969!GO:0019001;guanyl nucleotide binding;0.000901603024888969!GO:0006695;cholesterol biosynthetic process;0.000924097199839004!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000928891251394828!GO:0018196;peptidyl-asparagine modification;0.000957881881517381!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000957881881517381!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00103739152453507!GO:0015002;heme-copper terminal oxidase activity;0.00103739152453507!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00103739152453507!GO:0004129;cytochrome-c oxidase activity;0.00103739152453507!GO:0016481;negative regulation of transcription;0.00108260092643215!GO:0006839;mitochondrial transport;0.00108809502549287!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0011047764929952!GO:0005657;replication fork;0.00115463367159017!GO:0000151;ubiquitin ligase complex;0.00117613938454492!GO:0006414;translational elongation;0.00118133551388845!GO:0050662;coenzyme binding;0.00120434482911583!GO:0005684;U2-dependent spliceosome;0.00127215465565981!GO:0006118;electron transport;0.00136447113302589!GO:0001558;regulation of cell growth;0.00136756449284559!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00147496055090023!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00148424969818473!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00151298292029588!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00151298292029588!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00152346932671404!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00152346932671404!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00152346932671404!GO:0008186;RNA-dependent ATPase activity;0.00156920696847794!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00157241750682413!GO:0042802;identical protein binding;0.00167010015759472!GO:0006383;transcription from RNA polymerase III promoter;0.00168698073802851!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00171161151285877!GO:0031072;heat shock protein binding;0.00175276211477522!GO:0030132;clathrin coat of coated pit;0.00188874502106152!GO:0006807;nitrogen compound metabolic process;0.00191017292067866!GO:0004576;oligosaccharyl transferase activity;0.00191121109943587!GO:0006979;response to oxidative stress;0.00191921556840071!GO:0015992;proton transport;0.00193008126028953!GO:0007006;mitochondrial membrane organization and biogenesis;0.00193403326221114!GO:0050794;regulation of cellular process;0.00193585002481969!GO:0006818;hydrogen transport;0.00194017646059612!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00201176878659656!GO:0006778;porphyrin metabolic process;0.00203109706537163!GO:0033013;tetrapyrrole metabolic process;0.00203109706537163!GO:0046489;phosphoinositide biosynthetic process;0.00205084131173555!GO:0003684;damaged DNA binding;0.00212954172857324!GO:0000075;cell cycle checkpoint;0.00213266872927263!GO:0006066;alcohol metabolic process;0.00214026278044589!GO:0022890;inorganic cation transmembrane transporter activity;0.00214842209895316!GO:0003678;DNA helicase activity;0.00217957388540751!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00223210447337673!GO:0043488;regulation of mRNA stability;0.00244701854674508!GO:0043487;regulation of RNA stability;0.00244701854674508!GO:0051287;NAD binding;0.00254588487845162!GO:0030036;actin cytoskeleton organization and biogenesis;0.0025835308129894!GO:0003729;mRNA binding;0.00283707074497601!GO:0048037;cofactor binding;0.00299682919167951!GO:0008168;methyltransferase activity;0.00304809491835833!GO:0016741;transferase activity, transferring one-carbon groups;0.00305530505384597!GO:0030663;COPI coated vesicle membrane;0.00305530505384597!GO:0030126;COPI vesicle coat;0.00305530505384597!GO:0030137;COPI-coated vesicle;0.0031212215585011!GO:0006740;NADPH regeneration;0.00325296722503863!GO:0006098;pentose-phosphate shunt;0.00325296722503863!GO:0019899;enzyme binding;0.00335766476363887!GO:0031301;integral to organelle membrane;0.00338203861178725!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00348856678064887!GO:0000082;G1/S transition of mitotic cell cycle;0.00356767111672406!GO:0006779;porphyrin biosynthetic process;0.00360829059145466!GO:0033014;tetrapyrrole biosynthetic process;0.00360829059145466!GO:0006402;mRNA catabolic process;0.00362842760230988!GO:0030880;RNA polymerase complex;0.00367267996049111!GO:0004004;ATP-dependent RNA helicase activity;0.00386505823476451!GO:0030658;transport vesicle membrane;0.00387547437366135!GO:0016125;sterol metabolic process;0.0040714174686663!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00411074718355871!GO:0009308;amine metabolic process;0.00424123969478439!GO:0051087;chaperone binding;0.00432513451601154!GO:0006595;polyamine metabolic process;0.00433643420911393!GO:0007051;spindle organization and biogenesis;0.00445718997255439!GO:0015631;tubulin binding;0.00454673843714693!GO:0006733;oxidoreduction coenzyme metabolic process;0.00463142604135002!GO:0032508;DNA duplex unwinding;0.00472242577572074!GO:0032392;DNA geometric change;0.00472242577572074!GO:0005996;monosaccharide metabolic process;0.00516044283075927!GO:0006950;response to stress;0.00526643575266901!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00527233185500077!GO:0007010;cytoskeleton organization and biogenesis;0.00529343418569342!GO:0000775;chromosome, pericentric region;0.00529343418569342!GO:0005975;carbohydrate metabolic process;0.00534038148605658!GO:0016272;prefoldin complex;0.00537093037751058!GO:0006401;RNA catabolic process;0.00537093037751058!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00560675589843983!GO:0042168;heme metabolic process;0.00566589465566633!GO:0019318;hexose metabolic process;0.00574030246786932!GO:0030118;clathrin coat;0.00581644008946513!GO:0006612;protein targeting to membrane;0.0058327066758191!GO:0016363;nuclear matrix;0.00593876674838058!GO:0005874;microtubule;0.00595758962730274!GO:0051168;nuclear export;0.00623635470857102!GO:0017166;vinculin binding;0.00634572285467275!GO:0030134;ER to Golgi transport vesicle;0.006417880513052!GO:0051539;4 iron, 4 sulfur cluster binding;0.00661360607758975!GO:0006519;amino acid and derivative metabolic process;0.00666587976932986!GO:0048471;perinuclear region of cytoplasm;0.0066696737921348!GO:0006007;glucose catabolic process;0.00678953040088139!GO:0005769;early endosome;0.00689889475903405!GO:0006302;double-strand break repair;0.0069357926951925!GO:0043492;ATPase activity, coupled to movement of substances;0.00711467593175902!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00715059205176592!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00765764305911901!GO:0006289;nucleotide-excision repair;0.00796142995250745!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00798943083093337!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00807509912807785!GO:0000428;DNA-directed RNA polymerase complex;0.00807509912807785!GO:0006268;DNA unwinding during replication;0.00817935812514231!GO:0008139;nuclear localization sequence binding;0.00823115889090617!GO:0000059;protein import into nucleus, docking;0.00827522324420608!GO:0051101;regulation of DNA binding;0.0083819036448634!GO:0009112;nucleobase metabolic process;0.00866458399210599!GO:0030659;cytoplasmic vesicle membrane;0.00870880504847374!GO:0040029;regulation of gene expression, epigenetic;0.00873470755430977!GO:0030027;lamellipodium;0.00874983563728038!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00896361732372674!GO:0048487;beta-tubulin binding;0.00900533071338263!GO:0044452;nucleolar part;0.00923124406785611!GO:0030660;Golgi-associated vesicle membrane;0.00935179681974649!GO:0003682;chromatin binding;0.00951528703344035!GO:0006783;heme biosynthetic process;0.00978859441886971!GO:0048500;signal recognition particle;0.0101609598172068!GO:0005774;vacuolar membrane;0.0101741806034176!GO:0005869;dynactin complex;0.0102459564300152!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0103325817582148!GO:0051252;regulation of RNA metabolic process;0.0104489582427729!GO:0000049;tRNA binding;0.0104872438342783!GO:0006509;membrane protein ectodomain proteolysis;0.0107438421010417!GO:0033619;membrane protein proteolysis;0.0107438421010417!GO:0006891;intra-Golgi vesicle-mediated transport;0.0107604553305459!GO:0006739;NADP metabolic process;0.0111534232842528!GO:0007040;lysosome organization and biogenesis;0.0114941703388433!GO:0030127;COPII vesicle coat;0.0114990441797389!GO:0012507;ER to Golgi transport vesicle membrane;0.0114990441797389!GO:0007050;cell cycle arrest;0.0115423401192376!GO:0065009;regulation of a molecular function;0.0116222099047012!GO:0031902;late endosome membrane;0.0120757668211053!GO:0005862;muscle thin filament tropomyosin;0.0120757668211053!GO:0008632;apoptotic program;0.0122411670516549!GO:0003711;transcription elongation regulator activity;0.0123102638750876!GO:0030029;actin filament-based process;0.0123102638750876!GO:0004177;aminopeptidase activity;0.0123988431938224!GO:0044255;cellular lipid metabolic process;0.0128412030619413!GO:0008286;insulin receptor signaling pathway;0.0130213575020642!GO:0030119;AP-type membrane coat adaptor complex;0.0139123301209089!GO:0008652;amino acid biosynthetic process;0.0141016592784383!GO:0045892;negative regulation of transcription, DNA-dependent;0.0142057705123542!GO:0048522;positive regulation of cellular process;0.0144397514684134!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0144406508366529!GO:0006506;GPI anchor biosynthetic process;0.0145419563629942!GO:0045792;negative regulation of cell size;0.0148255064143006!GO:0006220;pyrimidine nucleotide metabolic process;0.015138353548946!GO:0004364;glutathione transferase activity;0.0153394507272269!GO:0006790;sulfur metabolic process;0.0153545187510817!GO:0006650;glycerophospholipid metabolic process;0.0156648300880878!GO:0004003;ATP-dependent DNA helicase activity;0.0159597382904246!GO:0006352;transcription initiation;0.0163602483879823!GO:0030433;ER-associated protein catabolic process;0.0165639161296514!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0165639161296514!GO:0006769;nicotinamide metabolic process;0.0167248787678044!GO:0006497;protein amino acid lipidation;0.016768131974354!GO:0000084;S phase of mitotic cell cycle;0.0169371660308576!GO:0051540;metal cluster binding;0.0170850120272172!GO:0051536;iron-sulfur cluster binding;0.0170850120272172!GO:0007346;regulation of progression through mitotic cell cycle;0.0171930811137261!GO:0007088;regulation of mitosis;0.0171930811137261!GO:0006310;DNA recombination;0.0172308920417013!GO:0015036;disulfide oxidoreductase activity;0.0179799702688761!GO:0030308;negative regulation of cell growth;0.0183131682033438!GO:0016044;membrane organization and biogenesis;0.0183872886789314!GO:0030145;manganese ion binding;0.018550893636668!GO:0004518;nuclease activity;0.018654616910567!GO:0031529;ruffle organization and biogenesis;0.0188585427532455!GO:0030521;androgen receptor signaling pathway;0.0189505417708019!GO:0044433;cytoplasmic vesicle part;0.0190801297348303!GO:0033559;unsaturated fatty acid metabolic process;0.0192764891981759!GO:0006636;unsaturated fatty acid biosynthetic process;0.0192764891981759!GO:0006505;GPI anchor metabolic process;0.0194797378537445!GO:0003756;protein disulfide isomerase activity;0.0194797378537445!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0194797378537445!GO:0007264;small GTPase mediated signal transduction;0.0195659924987458!GO:0007021;tubulin folding;0.0195919655328078!GO:0044437;vacuolar part;0.0205873977441633!GO:0031418;L-ascorbic acid binding;0.020659772541018!GO:0051052;regulation of DNA metabolic process;0.0207964437351474!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0212251334492924!GO:0030125;clathrin vesicle coat;0.0213479588345141!GO:0030665;clathrin coated vesicle membrane;0.0213479588345141!GO:0009303;rRNA transcription;0.0216343611078271!GO:0030131;clathrin adaptor complex;0.0216412134681098!GO:0043414;biopolymer methylation;0.0220184260013097!GO:0006284;base-excision repair;0.022305148809603!GO:0016860;intramolecular oxidoreductase activity;0.02248107041014!GO:0042158;lipoprotein biosynthetic process;0.0232336511833876!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0232336511833876!GO:0045047;protein targeting to ER;0.0232336511833876!GO:0007033;vacuole organization and biogenesis;0.0235969680964182!GO:0000096;sulfur amino acid metabolic process;0.0236489335264129!GO:0007243;protein kinase cascade;0.0237189172919862!GO:0051098;regulation of binding;0.0245852929628585!GO:0040008;regulation of growth;0.0247277153829359!GO:0005637;nuclear inner membrane;0.0247277153829359!GO:0000339;RNA cap binding;0.0249364292085057!GO:0001726;ruffle;0.025225176805494!GO:0005765;lysosomal membrane;0.0259012276852778!GO:0016408;C-acyltransferase activity;0.0259631090462989!GO:0031300;intrinsic to organelle membrane;0.0264263970493399!GO:0035258;steroid hormone receptor binding;0.0264724917550704!GO:0005758;mitochondrial intermembrane space;0.0266168258410634!GO:0006458;'de novo' protein folding;0.0273409873718731!GO:0051084;'de novo' posttranslational protein folding;0.0273409873718731!GO:0030508;thiol-disulfide exchange intermediate activity;0.0277497584949651!GO:0008312;7S RNA binding;0.0280486578577321!GO:0000209;protein polyubiquitination;0.0282782798160683!GO:0006405;RNA export from nucleus;0.0282929951277187!GO:0035035;histone acetyltransferase binding;0.0284593160120535!GO:0019798;procollagen-proline dioxygenase activity;0.0286283799934895!GO:0005586;collagen type III;0.0288783108365468!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0293129504373005!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0298501719587675!GO:0019362;pyridine nucleotide metabolic process;0.0306014819428925!GO:0050178;phenylpyruvate tautomerase activity;0.0308604300396366!GO:0009451;RNA modification;0.0312414426717861!GO:0008538;proteasome activator activity;0.0318135840573119!GO:0043189;H4/H2A histone acetyltransferase complex;0.0319025139381717!GO:0045936;negative regulation of phosphate metabolic process;0.0324764075584078!GO:0031543;peptidyl-proline dioxygenase activity;0.0330811178613682!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.033216386252929!GO:0006730;one-carbon compound metabolic process;0.0334675122897649!GO:0008180;signalosome;0.0334675122897649!GO:0016407;acetyltransferase activity;0.0338050543039611!GO:0006767;water-soluble vitamin metabolic process;0.0344099138815707!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0346932932772109!GO:0006541;glutamine metabolic process;0.0351999472790716!GO:0004527;exonuclease activity;0.0353815917483815!GO:0008203;cholesterol metabolic process;0.0354406789998652!GO:0006275;regulation of DNA replication;0.0360971012715011!GO:0032984;macromolecular complex disassembly;0.0362680384276257!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0368691802456909!GO:0046365;monosaccharide catabolic process;0.0373306084236801!GO:0000123;histone acetyltransferase complex;0.0373509519257889!GO:0031970;organelle envelope lumen;0.0383191069895382!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0385623493315801!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0385623493315801!GO:0046519;sphingoid metabolic process;0.0386712583015702!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0388180368441412!GO:0010257;NADH dehydrogenase complex assembly;0.0388180368441412!GO:0033108;mitochondrial respiratory chain complex assembly;0.0388180368441412!GO:0050789;regulation of biological process;0.0389277230335736!GO:0007093;mitotic cell cycle checkpoint;0.0389277230335736!GO:0019206;nucleoside kinase activity;0.0390075787391367!GO:0005581;collagen;0.0393809802443715!GO:0004448;isocitrate dehydrogenase activity;0.0396362112601367!GO:0032259;methylation;0.0397153481593014!GO:0006643;membrane lipid metabolic process;0.0407203499262698!GO:0043022;ribosome binding;0.0409240101379776!GO:0030496;midbody;0.0414645371655395!GO:0030911;TPR domain binding;0.0414658679645565!GO:0006354;RNA elongation;0.0418112730844756!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0418965112661632!GO:0005832;chaperonin-containing T-complex;0.0420040594759104!GO:0043241;protein complex disassembly;0.0420891633474811!GO:0009116;nucleoside metabolic process;0.0420891633474811!GO:0016584;nucleosome positioning;0.0422609222426921!GO:0035267;NuA4 histone acetyltransferase complex;0.0425181396563565!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0426105440206888!GO:0031272;regulation of pseudopodium formation;0.0426105440206888!GO:0031269;pseudopodium formation;0.0426105440206888!GO:0031344;regulation of cell projection organization and biogenesis;0.0426105440206888!GO:0031268;pseudopodium organization and biogenesis;0.0426105440206888!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0426105440206888!GO:0031274;positive regulation of pseudopodium formation;0.0426105440206888!GO:0008047;enzyme activator activity;0.0432127474987809!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0437895206600106!GO:0003746;translation elongation factor activity;0.0438492470843718!GO:0006984;ER-nuclear signaling pathway;0.0446643507188224!GO:0005652;nuclear lamina;0.0450534641563506!GO:0003923;GPI-anchor transamidase activity;0.0457246154182854!GO:0016255;attachment of GPI anchor to protein;0.0457246154182854!GO:0042765;GPI-anchor transamidase complex;0.0457246154182854!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0468594435533372!GO:0006376;mRNA splice site selection;0.048023927343021!GO:0000389;nuclear mRNA 3'-splice site recognition;0.048023927343021!GO:0045926;negative regulation of growth;0.0481909724176258!GO:0003690;double-stranded DNA binding;0.0487568667196773!GO:0045893;positive regulation of transcription, DNA-dependent;0.0489305104343007!GO:0000118;histone deacetylase complex;0.0490366496004455!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0490366496004455!GO:0031124;mRNA 3'-end processing;0.0492932686480952!GO:0043624;cellular protein complex disassembly;0.0496585137228113
|sample_id=11700
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=umbilical cord
|top_motifs=RXRA_VDR{dimer}:1.72271906635;GLI1..3:1.4701497021;HOX{A5,B5}:1.34442759232;GTF2A1,2:1.25595940557;TAL1_TCF{3,4,12}:1.20093187532;TFAP4:1.15923142498;ATF6:1.15915485743;LHX3,4:1.11792778599;PBX1:1.07047433566;ZNF238:1.05266864026;HAND1,2:1.03779420109;NR5A1,2:1.02118185544;AR:0.913819876528;RXR{A,B,G}:0.896122070975;NANOG:0.881458748263;EBF1:0.870831103668;NR6A1:0.855365744038;IKZF1:0.76268519384;NR3C1:0.749512625872;NR1H4:0.747214686043;GFI1:0.745021858239;ESRRA:0.731195986305;STAT5{A,B}:0.588265667422;POU2F1..3:0.586697708663;ZNF148:0.581978831223;NFY{A,B,C}:0.577723102313;TFCP2:0.562493836479;TEAD1:0.555615324476;GZF1:0.548147770488;ZNF423:0.543790204109;SOX17:0.540953935631;SRF:0.516464165344;GFI1B:0.473893344261;NKX2-3_NKX2-5:0.454381399178;TP53:0.449600062522;NFIX:0.420483660644;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.400159525142;RORA:0.352404912317;TFAP2{A,C}:0.351053558202;KLF4:0.349888589743;ZBTB6:0.339050742566;HNF4A_NR2F1,2:0.337035190743;TLX1..3_NFIC{dimer}:0.331019278694;CDC5L:0.291210861691;NANOG{mouse}:0.288658676671;TOPORS:0.281670143205;HES1:0.256338023884;ZIC1..3:0.242072417203;TBP:0.230437632706;SPZ1:0.227225339853;HLF:0.226243006097;ESR1:0.222869298235;UFEwm:0.220802770808;RREB1:0.213520150131;YY1:0.191917984158;HNF1A:0.183101719314;EN1,2:0.177416501554;NFE2L2:0.17519696568;REST:0.170599423925;ALX4:0.168093939811;PRRX1,2:0.13730760944;TBX4,5:0.104995657433;SMAD1..7,9:0.102401599621;XCPE1{core}:0.098756770372;CEBPA,B_DDIT3:0.0877871947593;LEF1_TCF7_TCF7L1,2:0.0785425281739;CRX:0.071646917388;PAX3,7:0.0642398240907;NFE2:0.0599644627012;MAFB:0.059214812143;MYB:0.0537712947415;PATZ1:0.0144310236284;GTF2I:0.00361463367025;E2F1..5:0.00109736249727;GATA6:-0.0106319693806;PPARG:-0.0165530052249;ZNF384:-0.0267441388089;POU3F1..4:-0.0402069027106;BACH2:-0.0481453540423;RFX1:-0.0534778241695;NFATC1..3:-0.0568744339574;SOX5:-0.0574810970425;FOS_FOS{B,L1}_JUN{B,D}:-0.0628884264052;HOX{A6,A7,B6,B7}:-0.0910612433789;SOX{8,9,10}:-0.0952884843795;PAX1,9:-0.104850656817;ZNF143:-0.115591088224;HIC1:-0.116592013238;HSF1,2:-0.121237683365;PAX5:-0.12488674813;XBP1:-0.138181474561;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.142659024249;RUNX1..3:-0.146471954954;MYBL2:-0.154463304296;POU5F1:-0.160319179221;MTF1:-0.165150437525;HOXA9_MEIS1:-0.183778665798;NKX3-1:-0.192547814699;bHLH_family:-0.19488833996;FOSL2:-0.195995629432;MZF1:-0.203426064468;DBP:-0.205875069196;NFKB1_REL_RELA:-0.206264325867;NKX2-2,8:-0.206538863879;SP1:-0.2215500725;POU1F1:-0.22320079815;ONECUT1,2:-0.224083045047;PITX1..3:-0.23176446941;ADNP_IRX_SIX_ZHX:-0.250495869185;MEF2{A,B,C,D}:-0.254059361017;HOX{A4,D4}:-0.262316201342;LMO2:-0.292665969987;STAT2,4,6:-0.298898401818;NFE2L1:-0.311004406081;PAX8:-0.312287884996;ELK1,4_GABP{A,B1}:-0.318460603355;FOXM1:-0.320738713586;FOXL1:-0.336043555423;T:-0.342211184828;ETS1,2:-0.384825942381;FOX{F1,F2,J1}:-0.386675723204;OCT4_SOX2{dimer}:-0.392331288549;CUX2:-0.401524064005;HBP1_HMGB_SSRP1_UBTF:-0.410726982932;GATA4:-0.416146264519;PAX6:-0.42144127356;NHLH1,2:-0.434800931319;PRDM1:-0.441089475934;SPIB:-0.446111780513;TEF:-0.446720839451;STAT1,3:-0.45199641715;ELF1,2,4:-0.454308359082;SNAI1..3:-0.455385933631;MAZ:-0.457694475712;CDX1,2,4:-0.497252154935;AHR_ARNT_ARNT2:-0.497926385189;TFAP2B:-0.498689887468;FOXP3:-0.50573491808;NRF1:-0.508182297229;AIRE:-0.513421320735;FOXD3:-0.520370646705;ARID5B:-0.52672112223;FOXA2:-0.543930921356;HMX1:-0.550505504168;TFDP1:-0.557874265237;MTE{core}:-0.580453262176;SOX2:-0.584576426961;NKX3-2:-0.613636001652;RFX2..5_RFXANK_RFXAP:-0.62821708365;ATF2:-0.658415597389;EVI1:-0.673658917477;MED-1{core}:-0.682598446604;MYFfamily:-0.684917805577;TLX2:-0.689559319464;FOXQ1:-0.691117501982;GCM1,2:-0.724704317423;HMGA1,2:-0.743010997938;DMAP1_NCOR{1,2}_SMARC:-0.743797368474;FOX{I1,J2}:-0.769386684864;JUN:-0.784385109974;EP300:-0.785240597128;BREu{core}:-0.796299463692;SPI1:-0.797566328242;POU6F1:-0.808198811715;MYOD1:-0.812668538174;ZEB1:-0.827979696462;BPTF:-0.837294773652;NKX6-1,2:-0.878230741687;IRF7:-0.888323789776;IRF1,2:-0.890844309889;NFIL3:-0.897758344805;ATF5_CREB3:-0.917524007546;PAX2:-0.923332557131;VSX1,2:-0.924570826875;ATF4:-0.952996959282;EGR1..3:-0.97258448549;CREB1:-0.982859412714;TGIF1:-0.988472968265;FOX{D1,D2}:-1.04991027276;PDX1:-1.05337071618;ZFP161:-1.08139957198;HIF1A:-1.09730041613;SREBF1,2:-1.11345426463;PAX4:-1.14415496389;FOXP1:-1.19372337298;ALX1:-1.21715862628;NKX2-1,4:-1.30501056332;RBPJ:-1.38022320743;ZBTB16:-1.44516473585;IKZF2:-1.53338119164;FOXO1,3,4:-1.71218786855;FOXN1:-1.97721513095
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11700-123A8;search_select_hide=table117:FF:11700-123A8
}}
}}

Latest revision as of 18:15, 4 June 2020

Name:Mesenchymal Stem Cells - umbilical, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12127
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical cord
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7535
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005444
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12127 CAGE DRX008359 DRR009231
Accession ID Hg19

Library idBAMCTSS
CNhs12127 DRZ000656 DRZ002041
Accession ID Hg38

Library idBAMCTSS
CNhs12127 DRZ012006 DRZ013391
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005444
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10011.GTTTCG sRNA-Seq DRX037179 DRR041545
Accession ID Hg19

Library idBAMCTSS
SRhi10011.GTTTCG DRZ007187


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0617
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.261
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.261
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0924
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.372
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0843
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.214
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.217
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.321
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.435
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0242
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.403
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.261
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.423
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.54
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.54
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.519
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12127

Jaspar motifP-value
MA0002.20.5
MA0003.10.179
MA0004.10.853
MA0006.10.309
MA0007.10.0302
MA0009.10.486
MA0014.10.918
MA0017.10.0598
MA0018.20.00107
MA0019.10.766
MA0024.10.243
MA0025.10.0414
MA0027.10.85
MA0028.10.953
MA0029.10.487
MA0030.10.0319
MA0031.19.3509e-5
MA0035.20.0554
MA0038.10.0069
MA0039.20.72
MA0040.10.854
MA0041.10.593
MA0042.10.994
MA0043.10.00227
MA0046.10.154
MA0047.20.192
MA0048.10.331
MA0050.14.72037e-7
MA0051.12.07794e-5
MA0052.10.68
MA0055.10.0374
MA0057.10.285
MA0058.10.883
MA0059.10.203
MA0060.11.45979e-4
MA0061.10.447
MA0062.20.109
MA0065.20.0336
MA0066.10.302
MA0067.10.0152
MA0068.10.393
MA0069.10.478
MA0070.10.149
MA0071.10.0143
MA0072.10.705
MA0073.10.715
MA0074.10.203
MA0076.10.289
MA0077.10.482
MA0078.10.732
MA0079.20.587
MA0080.22.67015e-6
MA0081.10.00641
MA0083.10.0853
MA0084.10.524
MA0087.10.882
MA0088.10.141
MA0090.10.0271
MA0091.10.00663
MA0092.10.0648
MA0093.10.906
MA0099.20.148
MA0100.10.666
MA0101.10.907
MA0102.20.04
MA0103.10.689
MA0104.20.978
MA0105.10.0677
MA0106.10.018
MA0107.10.863
MA0108.20.115
MA0111.10.658
MA0112.28.37915e-4
MA0113.10.0103
MA0114.10.0484
MA0115.10.994
MA0116.10.0363
MA0117.10.629
MA0119.10.0522
MA0122.10.748
MA0124.10.381
MA0125.10.573
MA0131.10.281
MA0135.10.437
MA0136.14.77891e-6
MA0137.20.285
MA0138.20.0672
MA0139.10.682
MA0140.10.0112
MA0141.10.0651
MA0142.10.587
MA0143.10.958
MA0144.10.822
MA0145.10.159
MA0146.10.023
MA0147.10.791
MA0148.10.719
MA0149.10.662
MA0150.10.832
MA0152.10.961
MA0153.10.17
MA0154.10.0647
MA0155.10.174
MA0156.10.00902
MA0157.10.00579
MA0159.10.399
MA0160.10.104
MA0162.10.0977
MA0163.16.93535e-4
MA0164.10.749
MA0258.10.0177
MA0259.10.827



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12127

Novel motifP-value
10.0839
100.398
1000.28
1010.589
1020.647
1030.11
1040.425
1050.246
1060.19
1070.0619
1080.574
1090.0193
110.0331
1100.0671
1110.389
1120.974
1130.793
1140.247
1150.819
1160.0652
1170.233
1180.397
1190.212
120.505
1200.2
1210.809
1220.99
1230.315
1240.535
1250.397
1260.38
1270.0346
1280.188
1290.404
130.215
1300.238
1310.99
1320.366
1330.409
1340.322
1350.572
1360.778
1370.093
1380.235
1390.261
140.94
1400.591
1410.507
1420.107
1430.132
1440.597
1450.442
1460.186
1470.165
1480.506
1490.128
150.461
1500.454
1510.331
1520.142
1530.353
1540.541
1550.284
1560.373
1570.618
1580.401
1590.755
160.11
1600.0201
1610.17
1620.0993
1630.509
1640.632
1650.446
1660.388
1670.925
1680.68
1690.0299
170.0584
180.177
190.0926
20.413
200.67
210.644
220.0838
230.365
240.686
250.832
260.0121
270.222
280.335
290.353
30.261
300.393
310.378
325.47847e-9
330.523
340.166
350.618
360.149
370.0767
380.336
390.331
40.595
400.013
410.641
420.712
430.102
440.388
450.621
460.0481
470.12
480.0894
490.139
50.844
500.302
510.115
520.978
530.808
540.384
550.332
560.192
570.183
580.957
590.068
60.747
600.576
610.281
620.719
630.137
640.119
650.0468
660.258
670.989
680.14
690.182
70.605
700.922
710.051
720.955
730.104
740.877
750.26
760.436
770.0427
780.785
790.085
80.0394
800.886
810.461
820.282
830.946
840.352
850.211
860.946
870.341
880.294
890.24
90.368
900.948
910.264
920.941
930.262
940.319
950.209
960.589
970.643
980.357
990.00203



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12127


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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