FF:11616-122A5: Difference between revisions

Latest revision as of 18:12, 4 June 2020

Name:	Mesenchymal Stem Cells - bone marrow, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12100
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal stem cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC7505
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005989

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12100		CAGE		DRX008352		DRR009224

Accession ID Hg19

Library id		BAM		CTSS
CNhs12100		DRZ000649		DRZ002034

Accession ID Hg38

Library id		BAM		CTSS
CNhs12100		DRZ011999		DRZ013384

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0244
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0955
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.425
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.166
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.292
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.198
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.782
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0129
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0139
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.698
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.384
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.384
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.584
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12100

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.243
MA0003.1	MA0003.1	0.344
MA0004.1	MA0004.1	0.586
MA0006.1	MA0006.1	0.657
MA0007.1	MA0007.1	0.00238
MA0009.1	MA0009.1	0.0638
MA0014.1	MA0014.1	0.9
MA0017.1	MA0017.1	0.117
MA0018.2	MA0018.2	0.00293
MA0019.1	MA0019.1	0.774
MA0024.1	MA0024.1	0.705
MA0025.1	MA0025.1	0.114
MA0027.1	MA0027.1	0.281
MA0028.1	MA0028.1	0.421
MA0029.1	MA0029.1	0.0394
MA0030.1	MA0030.1	1.60618e-5
MA0031.1	MA0031.1	8.99065e-6
MA0035.2	MA0035.2	0.409
MA0038.1	MA0038.1	0.0399
MA0039.2	MA0039.2	0.787
MA0040.1	MA0040.1	0.16
MA0041.1	MA0041.1	0.494
MA0042.1	MA0042.1	0.533
MA0043.1	MA0043.1	4.08483e-5
MA0046.1	MA0046.1	0.106
MA0047.2	MA0047.2	0.183
MA0048.1	MA0048.1	0.187
MA0050.1	MA0050.1	1.61196e-11
MA0051.1	MA0051.1	4.82727e-7
MA0052.1	MA0052.1	0.0158
MA0055.1	MA0055.1	0.11
MA0057.1	MA0057.1	0.372
MA0058.1	MA0058.1	0.848
MA0059.1	MA0059.1	0.096
MA0060.1	MA0060.1	0.00214
MA0061.1	MA0061.1	0.339
MA0062.2	MA0062.2	0.0177
MA0065.2	MA0065.2	0.0672
MA0066.1	MA0066.1	0.0212
MA0067.1	MA0067.1	0.0398
MA0068.1	MA0068.1	9.37233e-4
MA0069.1	MA0069.1	0.811
MA0070.1	MA0070.1	0.0455
MA0071.1	MA0071.1	0.0353
MA0072.1	MA0072.1	0.105
MA0073.1	MA0073.1	0.772
MA0074.1	MA0074.1	0.71
MA0076.1	MA0076.1	0.0491
MA0077.1	MA0077.1	0.762
MA0078.1	MA0078.1	0.415
MA0079.2	MA0079.2	0.181
MA0080.2	MA0080.2	3.05086e-6
MA0081.1	MA0081.1	0.0469
MA0083.1	MA0083.1	0.0041
MA0084.1	MA0084.1	0.439
MA0087.1	MA0087.1	0.474
MA0088.1	MA0088.1	0.181
MA0090.1	MA0090.1	0.194
MA0091.1	MA0091.1	0.234
MA0092.1	MA0092.1	0.333
MA0093.1	MA0093.1	0.761
MA0099.2	MA0099.2	0.00174
MA0100.1	MA0100.1	0.893
MA0101.1	MA0101.1	0.74
MA0102.2	MA0102.2	3.80166e-4
MA0103.1	MA0103.1	0.441
MA0104.2	MA0104.2	0.379
MA0105.1	MA0105.1	0.0191
MA0106.1	MA0106.1	0.0834
MA0107.1	MA0107.1	0.785
MA0108.2	MA0108.2	0.00313
MA0111.1	MA0111.1	0.703
MA0112.2	MA0112.2	5.16574e-4
MA0113.1	MA0113.1	0.0135
MA0114.1	MA0114.1	0.0554
MA0115.1	MA0115.1	0.889
MA0116.1	MA0116.1	0.0233
MA0117.1	MA0117.1	0.921
MA0119.1	MA0119.1	0.0223
MA0122.1	MA0122.1	0.505
MA0124.1	MA0124.1	0.498
MA0125.1	MA0125.1	0.131
MA0131.1	MA0131.1	0.566
MA0135.1	MA0135.1	0.0362
MA0136.1	MA0136.1	1.1045e-5
MA0137.2	MA0137.2	9.61317e-4
MA0138.2	MA0138.2	0.0724
MA0139.1	MA0139.1	0.585
MA0140.1	MA0140.1	0.158
MA0141.1	MA0141.1	0.00921
MA0142.1	MA0142.1	0.401
MA0143.1	MA0143.1	0.898
MA0144.1	MA0144.1	0.307
MA0145.1	MA0145.1	0.527
MA0146.1	MA0146.1	0.0407
MA0147.1	MA0147.1	0.153
MA0148.1	MA0148.1	0.799
MA0149.1	MA0149.1	0.0464
MA0150.1	MA0150.1	0.734
MA0152.1	MA0152.1	0.437
MA0153.1	MA0153.1	0.812
MA0154.1	MA0154.1	0.115
MA0155.1	MA0155.1	0.149
MA0156.1	MA0156.1	0.00238
MA0157.1	MA0157.1	0.0864
MA0159.1	MA0159.1	0.404
MA0160.1	MA0160.1	0.0366
MA0162.1	MA0162.1	0.237
MA0163.1	MA0163.1	0.00126
MA0164.1	MA0164.1	0.659
MA0258.1	MA0258.1	0.0172
MA0259.1	MA0259.1	0.511

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12100

Novel motif	Logo	P-value
1	1	0.133
10	10	0.358
100	100	0.395
101	101	0.536
102	102	0.548
103	103	0.264
104	104	0.401
105	105	0.123
106	106	0.111
107	107	0.125
108	108	0.537
109	109	0.0284
11	11	0.0119
110	110	0.0609
111	111	0.12
112	112	0.252
113	113	0.569
114	114	0.243
115	115	0.976
116	116	0.135
117	117	0.404
118	118	0.39
119	119	0.257
12	12	0.916
120	120	0.0783
121	121	0.963
122	122	0.999
123	123	0.915
124	124	0.672
125	125	0.139
126	126	0.58
127	127	0.0661
128	128	0.21
129	129	0.586
13	13	0.32
130	130	0.768
131	131	0.621
132	132	0.338
133	133	0.449
134	134	0.831
135	135	0.583
136	136	0.646
137	137	0.197
138	138	0.203
139	139	0.374
14	14	0.982
140	140	0.335
141	141	0.293
142	142	0.272
143	143	0.0807
144	144	0.759
145	145	0.098
146	146	0.662
147	147	0.438
148	148	0.818
149	149	0.189
15	15	0.165
150	150	0.35
151	151	0.454
152	152	0.206
153	153	0.916
154	154	0.746
155	155	0.749
156	156	0.236
157	157	0.753
158	158	0.912
159	159	0.715
16	16	0.23
160	160	0.0026
161	161	0.938
162	162	0.311
163	163	0.396
164	164	0.66
165	165	0.717
166	166	0.731
167	167	0.538
168	168	0.796
169	169	0.0401
17	17	0.18
18	18	0.0801
19	19	0.111
2	2	0.673
20	20	0.898
21	21	0.514
22	22	0.161
23	23	0.247
24	24	0.819
25	25	0.79
26	26	0.0112
27	27	0.258
28	28	0.481
29	29	0.217
3	3	0.226
30	30	0.578
31	31	0.427
32	32	4.8488e-4
33	33	0.239
34	34	0.678
35	35	0.688
36	36	0.055
37	37	0.151
38	38	0.232
39	39	0.542
4	4	0.409
40	40	0.0176
41	41	0.757
42	42	0.488
43	43	0.142
44	44	0.377
45	45	0.6
46	46	0.0103
47	47	0.11
48	48	0.1
49	49	0.0902
5	5	0.589
50	50	0.596
51	51	0.326
52	52	0.899
53	53	0.993
54	54	0.339
55	55	0.343
56	56	0.252
57	57	0.0675
58	58	0.898
59	59	0.0451
6	6	0.946
60	60	0.582
61	61	0.573
62	62	0.406
63	63	0.165
64	64	0.101
65	65	0.0554
66	66	0.0483
67	67	0.888
68	68	0.377
69	69	0.00779
7	7	0.578
70	70	0.342
71	71	0.0534
72	72	0.745
73	73	0.0915
74	74	0.869
75	75	0.256
76	76	0.872
77	77	0.183
78	78	0.334
79	79	0.143
8	8	0.00854
80	80	0.847
81	81	0.335
82	82	0.191
83	83	0.502
84	84	0.37
85	85	0.228
86	86	0.845
87	87	0.503
88	88	0.377
89	89	0.113
9	9	0.443
90	90	0.702
91	91	0.329
92	92	0.275
93	93	0.211
94	94	0.0876
95	95	0.0823
96	96	0.28
97	97	0.746
98	98	0.093
99	99	0.00863

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12100

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000097 human mesenchymal stem cell of bone marrow sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008244
+|DRA_sample_Accession=CAGE@SAMD00005989
+|accession_numbers=CAGE;DRX008352;DRR009224;DRZ000649;DRZ002034;DRZ011999;DRZ013384
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.90!209.94!TWIST1;;chr12:66218255..66218304,+!p3@HMGA2!1.80!161.71!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.71!1421.33!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!1.62!148.94!SIX1;;chr12:66218598..66218645,+!p2@HMGA2!1.56!156.03!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.54!34.04!IRX2;;chr16:86600426..86600441,+!p1@FOXC2!1.51!75.18!FOXC2;;chr2:5832508..5832524,+!p1@SOX11!1.45!26.95!SOX11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!26.95!HOXC5;;chr17:46675420..46675465,-!p3@HOXB6!1.37!25.53!HOXB6;;chr11:65686802..65686818,+!p6@DRAP1!1.33!35.46!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.27!25.53!HMGA2;;chr17:46675558..46675577,-!p2@HOXB6!1.26!17.02!HOXB6;;chr9:132427883..132427951,+!p2@PRRX2!1.26!17.02!PRRX2;;chr12:66218836..66218888,+!p1@HMGA2!1.25!153.20!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!1.22!15.60!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!1.22!15.60!HOXB6;;chr11:65687222..65687240,+!p7@DRAP1!1.19!18.44!DRAP1;;chr12:54394309..54394336,+!p2@HOXC9!1.18!14.18!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!1.14!12.77!HOXC8;;chr12:66218469..66218477,+!p16@HMGA2!1.14!12.77!HMGA2;;chr17:59477403..59477414,+!p4@TBX2!1.14!12.77!TBX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.13!21.28!CREB3L1;;chr11:65686732..65686756,+!p2@DRAP1!1.12!51.07!DRAP1;;chr9:132427972..132428056,+!p1@PRRX2!1.11!15.60!PRRX2;;chr5:2751785..2751808,-!p2@IRX2!1.09!11.35!IRX2;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.35!TCF21;;chr12:66218183..66218209,+!p4@HMGA2!1.08!21.28!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!1.07!15.60!SATB2;;chr11:46299199..46299233,+!p1@CREB3L1!1.06!55.32!CREB3L1;;chr7:19157043..19157088,-!p2@TWIST1!1.04!25.53!TWIST1;;chr5:3595977..3595999,+!p1@IRX1!1.04!9.93!IRX1;;chr12:54422217..54422239,+!p3@HOXC6!1.04!9.93!HOXC6;;chr12:54447637..54447659,+!p4@HOXC4!1.04!9.93!HOXC4;;chr2:85981107..85981120,+!p3@ATOH8!1.04!9.93!ATOH8;;chr16:86600458..86600461,+!p3@FOXC2!1.04!9.93!FOXC2;;chr17:46690839..46690884,-!p1@HOXB8!1.04!9.93!HOXB8;;chr5:176738887..176738934,-!p1@MXD3!1.03!65.25!MXD3;;chr6:34204672..34204692,+!p1@HMGA1!1.02!1083.73!HMGA1;;chr12:66218573..66218596,+!p7@HMGA2!1.02!14.18!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!1.01!25.53!OSR1;;chr17:46687959..46688007,-!p2@HOXB7!1.01!12.77!HOXB7;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.93!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.51!HOXD8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.98!8.51!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!0.97!11.35!PRRX1;;chr12:66218378..66218401,+!p6@HMGA2!0.96!12.77!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.95!49.65!FOXM1;;chr17:59477233..59477263,+!p1@TBX2!0.95!25.53!TBX2;;chr19:38720294..38720348,-!p1@DPF1!0.95!9.93!DPF1;;chr12:66218443..66218461,+!p8@HMGA2!0.94!9.93!HMGA2;;chr20:30193083..30193098,+!p1@ID1!0.92!612.79!ID1;;chr16:54320646..54320672,-!p2@IRX3!0.92!11.35!IRX3;;chr6:45296048..45296082,+!p1@RUNX2!0.92!8.51!RUNX2;;chr5:72744594..72744609,-!p1@FOXD1!0.91!34.04!FOXD1;;chr8:145669791..145669834,-!p1@TONSL!0.91!21.28!TONSL;;chr11:65687243..65687276,+!p8@DRAP1!0.91!9.93!DRAP1;;chr12:115122318..115122331,-!p2@TBX3!0.91!7.09!TBX3;;chr12:54410948..54410992,+!p3@HOXC5!0.91!7.09!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.91!7.09!HMGA2;;chr12:66218923..66218934,+!p14@HMGA2!0.91!7.09!HMGA2;;chr16:54320127..54320148,-!p6@IRX3!0.91!7.09!IRX3;;chr17:46675586..46675600,-!p6@HOXB6!0.91!7.09!HOXB6;;chr17:46691732..46691766,-!p4@HOXB8!0.91!7.09!HOXB8;;chr19:47523058..47523114,+!p1@NPAS1!0.91!7.09!NPAS1;;chr1:2461692..2461710,-!p1@HES5!0.91!7.09!HES5;;chr5:3595961..3595975,+!p3@IRX1!0.91!7.09!IRX1;;chr12:54447599..54447630,+!p3@HOXC4!0.90!8.51!HOXC4;;chr2:85980951..85981004,+!p1@ATOH8!0.89!11.35!ATOH8;;chr16:54320617..54320643,-!p3@IRX3!0.88!8.51!IRX3;;chr17:41622765..41622821,-!p2@ETV4!0.87!9.93!ETV4;;chr1:8926441..8926473,-!p10@ENO1!0.87!9.93!ENO1;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.55!SNAI2;;chr1:170632285..170632309,+!p1@PRRX1!0.86!7.09!PRRX1;;chr14:61116168..61116180,-!p2@SIX1!0.85!7.09!SIX1;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.51!IRX3;;chr20:48599506..48599526,+!p1@SNAI1!0.82!38.30!SNAI1;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.04!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.82!9.93!TWIST2;;chr22:19748231..19748317,+!p1@TBX1!0.82!5.67!TBX1;;chr4:299227..299272,-!p1@ZNF732!0.82!5.67!ZNF732;;chr11:46316699..46316719,+!p10@CREB3L1!0.82!5.67!CREB3L1;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.67!IRX1;;chr7:27183291..27183324,-!p1@HOXA5!0.82!5.67!HOXA5;;chr17:8027418..8027432,-!p1@HES7!0.82!5.67!HES7;;chr1:23885981..23886002,-!p1@ID3!0.80!1004.29!ID3;;chr11:65667846..65667868,-!p1@FOSL1!0.79!150.36!FOSL1;;chr11:65687362..65687436,+!p3@DRAP1!0.79!25.53!DRAP1;;chr20:42295745..42295765,+!p1@MYBL2!0.77!87.95!MYBL2;;chr6:34204973..34204990,+!p4@HMGA1!0.77!72.34!HMGA1;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.67!BNC1;;chr11:65667884..65667895,-!p2@FOSL1!0.76!19.86!FOSL1;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.09!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.76!7.09!IRX5;;chr20:32274179..32274213,-!p1@E2F1!0.75!34.04!E2F1;;chr3:12329397..12329433,+!p2@PPARG!0.75!11.35!PPARG;;chr17:59477197..59477212,+!p2@TBX2!0.75!8.51!TBX2;;chr19:13134772..13134822,+!p2@NFIX!0.75!7.09!NFIX;;chr11:65686776..65686787,+!p9@DRAP1!0.75!5.67!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.74!15.60!AHRR;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.51!IKZF2;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.81!TCF19;;chr12:115121962..115121987,-!p1@TBX3!0.73!41.14!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.72!21.28!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!0.72!11.35!PPARG;;chr2:5832493..5832507,+!p2@SOX11!0.72!4.26!SOX11;;chr2:85981073..85981091,+!p5@ATOH8!0.72!4.26!ATOH8;;chr2:96012397..96012417,+!p3@KCNIP3!0.72!4.26!KCNIP3;;chr15:67418177..67418204,+!p9@SMAD3!0.72!4.26!SMAD3;;chr16:54320280..54320291,-!p9@IRX3!0.72!4.26!IRX3;;chr16:86601088..86601105,+!p5@FOXC2!0.72!4.26!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.72!4.26!ETV4;;chr17:41623716..41623727,-!p12@ETV4!0.72!4.26!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.72!4.26!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.72!4.26!HOXB6;;chr17:46692603..46692621,-!p6@HOXB8!0.72!4.26!HOXB8;;chr19:46801639..46801699,+!p1@HIF3A!0.72!4.26!HIF3A;;chr7:27196217..27196246,-!p2@HOXA7!0.72!4.26!HOXA7;;chr7:96654026..96654061,-!p2@DLX5!0.72!4.26!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.72!4.26!TOX;;chr11:65668011..65668020,-!p3@FOSL1!0.72!4.26!FOSL1;;chr11:65688877..65688891,+!p13@DRAP1!0.72!4.26!DRAP1;;chr12:115122303..115122314,-!p6@TBX3!0.72!4.26!TBX3;;chr12:54393880..54393962,+!p1@HOXC9!0.72!4.26!HOXC9;;chr12:54394059..54394088,+!p3@HOXC9!0.72!4.26!HOXC9;;chr12:54394416..54394467,+!p5@HOXC9!0.72!4.26!HOXC9;;chr12:54402694..54402705,+!p5@HOXC8!0.72!4.26!HOXC8;;chr12:54402729..54402743,+!p3@HOXC8!0.72!4.26!HOXC8;;chr12:54402790..54402805,+!p2@HOXC8!0.72!4.26!HOXC8;;chr12:54447868..54447892,+!p6@HOXC6,p7@HOXC4!0.72!4.26!HOXC6;;chr12:66218413..66218418,+!p17@HMGA2!0.72!4.26!HMGA2;;chr19:1592714..1592762,-!p1@MBD3!0.71!35.46!MBD3;;chr12:3068544..3068597,+!p1@TEAD4!0.70!26.95!TEAD4;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.95!MYBL2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.69!4.26!GLIS1;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.26!HMGA2;;chr12:7079780..7079791,-!p2@PHB2!0.68!22.70!PHB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.68!7.09!CREB3L2;;chr11:46299186..46299195,+!p3@CREB3L1!0.68!4.26!CREB3L1;;chr7:150945754..150945789,-!p2@SMARCD3!0.67!12.77!SMARCD3;;chr11:65686952..65686975,+!p5@DRAP1!0.66!22.70!DRAP1;;chr3:52001426..52001447,-!p3@PCBP4!0.66!11.35!PCBP4;;chr1:247171347..247171366,-!p2@ZNF695!0.66!7.09!ZNF695;;chr20:32274150..32274166,-!p2@E2F1!0.65!7.09!E2F1;;chr5:92919068..92919082,+!p5@NR2F1!0.65!4.26!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.64!82.27!SNAI2;;chr5:138609782..138609826,+!p5@MATR3!0.64!25.53!MATR3;;chr19:24097675..24097699,+!p1@ZNF726!0.64!12.77!ZNF726;;chr1:151032833..151032850,+!p3@MLLT11!0.64!8.51!MLLT11;;chr20:50721803..50721857,-!p2@ZFP64!0.64!5.67!ZFP64;;chr12:66218003..66218018,+!p9@HMGA2!0.64!4.26!HMGA2;;chr13:114238987..114238994,+!p2@TFDP1!0.64!4.26!TFDP1;;chr3:52001448..52001478,-!p2@PCBP4!0.63!53.90!PCBP4;;chr19:58962974..58963001,+!p1@ZNF324B!0.63!17.02!ZNF324B;;chr8:60031682..60031710,-!p2@TOX!0.63!5.67!TOX;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.26!FOXD1;;chr15:96874012..96874042,+!p2@NR2F2!0.62!34.04!NR2F2;;chr8:77593474..77593612,+!p1@ZFHX4!0.62!15.60!ZFHX4;;chr1:8483878..8483907,-!p4@RERE!0.62!14.18!RERE;;chr2:85981222..85981259,+!p2@ATOH8!0.62!5.67!ATOH8;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.18!ZBTB38;;chr1:8483756..8483809,-!p5@RERE!0.61!9.93!RERE;;chr19:45260775..45260838,+!p5@BCL3!0.61!4.26!BCL3;;chr11:61520075..61520136,+!p1@C11orf9!0.60!7.09!C11orf9;;chr13:74708269..74708291,-!p7@KLF12!0.60!4.26!KLF12;;chr1:8938709..8938720,-!p3@ENO1!0.59!171.64!ENO1;;chr20:39946361..39946379,-!p2@ZHX3!0.59!9.93!ZHX3;;chr16:54320675..54320715,-!p1@IRX3!0.59!7.09!IRX3;;chr19:49864746..49864780,-!p2@TEAD2!0.59!4.26!TEAD2;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.18!ETV4;;chr3:126076264..126076305,-!p2@KLF15!0.58!4.26!KLF15;;chr2:200320768..200320800,-!p4@SATB2!0.58!2.84!SATB2;;chr2:85981008..85981025,+!p7@ATOH8!0.58!2.84!ATOH8;;chr4:109089215..109089236,-!p25@LEF1!0.58!2.84!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.58!2.84!HOPX;;chr15:80843484..80843499,+!p5@ARNT2!0.58!2.84!ARNT2;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.84!BNC1;;chr15:90294087..90294115,-!p1@MESP1!0.58!2.84!MESP1;;chr16:54320322..54320343,-!p7@IRX3!0.58!2.84!IRX3;;chr16:86600870..86600921,+!p2@FOXC2!0.58!2.84!FOXC2;;chr17:46655672..46655697,-!p3@HOXB4!0.58!2.84!HOXB4;;chr17:46671504..46671541,-!p2@HOXB5!0.58!2.84!HOXB5;;chr17:46675539..46675551,-!p7@HOXB6!0.58!2.84!HOXB6;;chr17:46692318..46692362,-!p5@HOXB8!0.58!2.84!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.58!2.84!HOXB9;;chr19:11750543..11750565,+!p2@ZNF833P!0.58!2.84!ZNF833P;;chr5:76382989..76383001,-!p4@ZBED3!0.58!2.84!ZBED3;;chr5:929187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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor2.CNhs12100.11616-122A5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11616-122A5
 |is_a=EFO:0002091;;FF:0000097
 |is_obsolete=
-|library_ids=CNhs12100
+|library_id=CNhs12100
+|library_id_phase_based=2:CNhs12100
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11616
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11616
 |name=Mesenchymal Stem Cells - bone marrow, donor2
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12100,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS008244
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 }}

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FF:11616-122A5: Difference between revisions

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Latest revision as of 18:12, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0