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{{f5samples
{{f5samples
|id=FF:11601-120H8
|DRA_sample_Accession=CAGE@SAMD00004955
|name=Hepatic Sinusoidal Endothelial Cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004955
|sample_id=11601
|accession_numbers=CAGE;DRX008302;DRR009174;DRZ000599;DRZ001984;DRZ011949;DRZ013334
|rna_tube_id=120H8
|accession_numbers_RNASeq=sRNA-Seq;DRX037119;DRR041485;DRZ007127
|rna_box=120
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0001007,UBERON:0000055,UBERON:0001281,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0002368,UBERON:0000353,UBERON:0003497,UBERON:0003909,UBERON:0005177,UBERON:0002365,UBERON:0007500,UBERON:0001981,UBERON:0005172,UBERON:0006925,UBERON:0002049,UBERON:0002530,UBERON:0003835,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0005173,UBERON:0004535,UBERON:0002417,UBERON:0000949,UBERON:0001280,UBERON:0004647,UBERON:0002330,UBERON:0004537,UBERON:0000916,UBERON:0002423,UBERON:0001009
|rna_position=H8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000181,CL:0000417,CL:0000668,CL:0000215,CL:0000412,CL:0000255,CL:0000115,CL:0000182,CL:0002262,CL:1000398
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=lot:sc05
|rna_catalog_number=SC5005
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=liver
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.6
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=hepatic sinusoidal endothelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.34
|sample_note=
|profile_hcage=CNhs12092,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10008,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000115,CL:0000144,CL:0000213,CL:0000215,CL:0000220,CL:0000222,CL:0000255,CL:0000548,CL:0002078,CL:0002262,CL:0002321,CL:0002371,CL:1000398
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000077,UBERON:0000119,UBERON:0000353,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001009,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001280,UBERON:0001281,UBERON:0001555,UBERON:0001981,UBERON:0002049,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003081,UBERON:0003104,UBERON:0003497,UBERON:0003513,UBERON:0003835,UBERON:0003894,UBERON:0003909,UBERON:0003914,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004535,UBERON:0004537,UBERON:0004647,UBERON:0004872,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0005911,UBERON:0006235,UBERON:0006925,UBERON:0006965,UBERON:0007026,UBERON:0007500,UBERON:0007798,UBERON:0008835,UBERON:0008836,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000076
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!2.41!258.04!MYF5;;chr20:62680984..62680999,-!p1@SOX18!2.37!302.92!SOX18;;chr1:40105299..40105326,-!p1@HEYL!2.04!107.99!HEYL;;chr8:55370487..55370503,+!p1@SOX17!1.82!64.51!SOX17;;chr8:10588010..10588030,-!p1@SOX7!1.73!53.29!SOX7;;chr17:6926362..6926377,+!p1@BCL6B!1.71!50.49!BCL6B;;chr2:237076992..237077008,-!p2@GBX2!1.65!43.47!GBX2;;chr2:237077022..237077038,-!p1@GBX2!1.63!42.07!GBX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.58!185.12!CREB3L1;;chr12:96588368..96588394,+!p3@ELK3!1.58!96.77!ELK3;;chr17:1959369..1959388,+!p2@HIC1!1.51!79.94!HIC1;;chr11:61520075..61520136,+!p1@C11orf9!1.48!60.30!C11orf9;;chr21:39870339..39870443,-!p1@ERG!1.48!29.45!ERG;;chr14:29235961..29236008,+!p1@FOXG1!1.40!23.84!FOXG1;;chr8:11561684..11561751,+!p1@GATA4!1.40!23.84!GATA4;;chr2:5832508..5832524,+!p1@SOX11!1.34!21.04!SOX11;;chr17:46622205..46622218,-!p3@HOXB2!1.31!22.44!HOXB2;;chr10:94449703..94449718,+!p1@HHEX!1.29!70.12!HHEX;;chr6:134210243..134210257,+!p1@TCF21!1.28!18.23!TCF21;;chr17:46671108..46671147,-!p1@HOXB5!1.25!16.83!HOXB5;;chr14:29236269..29236285,+!p3@FOXG1!1.25!16.83!FOXG1;;chr5:92918919..92918942,+!p1@NR2F1!1.24!71.52!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!1.24!43.47!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!1.22!70.12!FOXD1;;chr19:13213511..13213545,-!p2@LYL1!1.22!16.83!LYL1;;chr19:46801639..46801699,+!p1@HIF3A!1.22!15.43!HIF3A;;chr6:34204921..34204939,+!p3@HMGA1!1.17!405.30!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!1.17!51.89!SIX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.44!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.13!30.85!FOXC2;;chr4:174451370..174451387,-!p1@HAND2!1.13!12.62!HAND2;;chr9:124991204..124991246,-!p1@LHX6!1.13!12.62!LHX6;;chr12:66218598..66218645,+!p2@HMGA2!1.11!54.69!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!1.11!19.63!FOXD1;;chr20:590944..590960,-!p1@TCF15!1.09!11.22!TCF15;;chr20:42543441..42543497,+!p1@TOX2!1.08!50.49!TOX2;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.68!ETV4;;chr17:46622229..46622257,-!p6@HOXB2!1.07!12.62!HOXB2;;chr5:72743793..72743855,-!p4@FOXD1!1.07!12.62!FOXD1;;chr12:124873357..124873401,-!p1@NCOR2!1.04!117.80!NCOR2;;chr17:46622114..46622138,-!p4@HOXB2!1.04!15.43!HOXB2;;chr1:23885981..23886002,-!p1@ID3!1.03!1702.54!ID3;;chr17:1958388..1958404,+!p1@HIC1!1.03!63.11!HIC1;;chr12:66218212..66218244,+!p5@HMGA2!1.02!14.02!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!1.01!14.02!HOXB4;;chr2:46524537..46524553,+!p1@EPAS1!0.99!890.54!EPAS1;;chr7:149470641..149470694,-!p1@ZNF467!0.98!39.27!ZNF467;;chr8:80679993..80680011,-!p1@HEY1!0.98!12.62!HEY1;;chr17:46675420..46675465,-!p3@HOXB6!0.98!9.82!HOXB6;;chr20:48599506..48599526,+!p1@SNAI1!0.97!54.69!SNAI1;;chr18:19749541..19749557,+!p1@GATA6!0.97!26.65!GATA6;;chr7:149470540..149470596,-!p2@ZNF467!0.97!11.22!ZNF467;;chr7:1577899..1577943,+!p3@MAFK!0.97!8.41!MAFK;;chr7:35293685..35293718,-!p1@TBX20!0.97!8.41!TBX20;;chr1:40105347..40105358,-!p2@HEYL!0.97!8.41!HEYL;;chr1:6479968..6479986,-!p1@HES2!0.97!8.41!HES2;;chr18:19749353..19749367,+!p4@GATA6!0.97!8.41!GATA6;;chr10:131762504..131762555,-!p1@EBF3!0.97!8.41!EBF3;;chr12:54447637..54447659,+!p4@HOXC4!0.97!8.41!HOXC4;;chr14:29234581..29234601,+!p2@FOXG1!0.97!8.41!FOXG1;;chr12:54447599..54447630,+!p3@HOXC4!0.95!9.82!HOXC4;;chr16:86544113..86544145,+!p1@FOXF1!0.95!9.82!FOXF1;;chr5:92918956..92918969,+!p4@NR2F1!0.94!8.41!NR2F1;;chr17:46621937..46621966,-!p2@HOXB2!0.93!21.04!HOXB2;;chr10:94449675..94449694,+!p2@HHEX!0.93!21.04!HHEX;;chr8:106330656..106330684,+!p1@ZFPM2!0.92!19.63!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.92!16.83!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.41!BNC1;;chr12:66218378..66218401,+!p6@HMGA2!0.91!11.22!HMGA2;;chr11:46333934..46333963,+!p5@CREB3L1!0.90!7.01!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.90!7.01!HOXC5;;chr17:46675469..46675481,-!p4@HOXB6!0.90!7.01!HOXB6;;chr19:13213465..13213478,-!p7@LYL1!0.90!7.01!LYL1;;chr22:19748231..19748317,+!p1@TBX1!0.90!7.01!TBX1;;chr2:45236540..45236577,-!p1@SIX2!0.90!7.01!SIX2;;chr4:174450089..174450153,-!p2@HAND2!0.90!7.01!HAND2;;chr3:52001448..52001478,-!p2@PCBP4!0.89!99.57!PCBP4;;chr20:42543506..42543549,+!p2@TOX2!0.89!16.83!TOX2;;chr18:19749386..19749404,+!p2@GATA6!0.89!9.82!GATA6;;chr1:156470494..156470505,-!p3@MEF2D!0.88!9.82!MEF2D;;chr3:128206762..128206781,-!p2@GATA2!0.87!42.07!GATA2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.23!TWIST1;;chr17:46622440..46622477,-!p5@HOXB2!0.86!7.01!HOXB2;;chr11:65667846..65667868,-!p1@FOSL1!0.85!172.50!FOSL1;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.22!GATA6;;chr20:50721803..50721857,-!p2@ZFP64!0.85!9.82!ZFP64;;chr1:23886132..23886156,-!p2@ID3!0.85!7.01!ID3;;chr8:49833978..49833996,-!p1@SNAI2!0.84!129.02!SNAI2;;chr6:34204672..34204692,+!p1@HMGA1!0.83!699.81!HMGA1;;chr19:49865646..49865718,-!p1@TEAD2!0.83!53.29!TEAD2;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.41!IRX3;;chr19:15543565..15543579,-!p2@WIZ!0.82!26.65!WIZ;;chr1:935467..935484,-!p1@HES4!0.82!26.65!HES4;;chr12:66218183..6621820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3!0.38!1.40!KCNIP3;;chr3:114343039..114343085,-!p8@ZBTB20!0.38!1.40!ZBTB20;;chr3:114343870..114343887,-!p9@ZBTB20!0.38!1.40!ZBTB20;;chr3:138665937..138665968,-!p1@FOXL2!0.38!1.40!FOXL2;;chr3:141087562..141087594,+!p12@ZBTB38!0.38!1.40!ZBTB38;;chr3:141121820..141121838,+!p9@ZBTB38!0.38!1.40!ZBTB38;;chr3:147111231..147111281,+!p3@ZIC1!0.38!1.40!ZIC1;;chr3:187455680..187455700,-!p4@BCL6!0.38!1.40!BCL6;;chr3:21792790..21792824,-!p4@ZNF385D!0.38!1.40!ZNF385D;;chr4:111558135..111558198,-!p2@PITX2!0.38!1.40!PITX2;;chr4:146402827..146402839,+!p10@SMAD1!0.38!1.40!SMAD1;;chr4:174451350..174451363,-!p3@HAND2!0.38!1.40!HAND2;;chr4:299227..299272,-!p1@ZNF732!0.38!1.40!ZNF732;;chr4:57522598..57522664,-!p3@HOPX!0.38!1.40!HOPX;;chr5:134369879..134369898,-!p2@PITX1!0.38!1.40!PITX1;;chr5:172662230..172662241,-!p3@NKX2-5!0.38!1.40!NKX2-5;;chr5:71803177..71803255,-!p1@ZNF366!0.38!1.40!ZNF366;;chr5:72744336..72744359,-!p5@FOXD1!0.38!1.40!FOXD1;;chr5:88119580..88119602,-!p17@MEF2C!0.38!1.40!MEF2C;;chr5:92918768..92918783,+!p8@NR2F1!0.38!1.40!NR2F1;;chr5:92919194..92919204,+!p16@NR2F1!0.38!1.40!NR2F1;;chr5:92919312..92919334,+!p13@NR2F1!0.38!1.40!NR2F1;;chr5:92920719..92920744,+!p17@NR2F1,p31@NR2F2!0.38!1.40!NR2F1;;chr6:126070748..126070768,+!p2@HEY2!0.38!1.40!HEY2;;chr6:15245752..15245767,+!p14@JARID2!0.38!1.40!JARID2;;chr6:1610178..1610190,+!p5@FOXC1!0.38!1.40!FOXC1;;chr6:20402608..20402629,+!p13@E2F3!0.38!1.40!E2F3;;chr6:21594206..21594221,+!p15@SOX4!0.38!1.40!SOX4;;chr6:36355431..36355466,-!p1@ETV7!0.38!1.40!ETV7;;chr6:41701581..41701613,-!p2@TFEB!0.38!1.40!TFEB;;chr7:100065686..100065701,-!p2@TSC22D4!0.38!1.40!TSC22D4;;chr7:100076673..100076682,-!p7@TSC22D4!0.38!1.40!TSC22D4;;chr7:138665870..138665905,-!p4@KIAA1549!0.38!1.40!KIAA1549;;chr7:139741594..139741615,-!p5@PARP12!0.38!1.40!PARP12;;chr7:139762578..139762589,-!p2@PARP12!0.38!1.40!PARP12;;chr7:150945740..150945750,-!p7@SMARCD3!0.38!1.40!SMARCD3;;chr7:1577076..1577095,+!p5@MAFK!0.38!1.40!MAFK;;chr7:27135533..27135546,-!p3@HOXA1!0.38!1.40!HOXA1;;chr7:27153428..27153440,-!p3@HOXA3!0.38!1.40!HOXA3;;chr7:27153613..27153630,-!p6@HOXA3!0.38!1.40!HOXA3;;chr7:27170042..27170064,-!p4@HOXA4!0.38!1.40!HOXA4;;chr7:27183114..27183138,-!p3@HOXA5!0.38!1.40!HOXA5;;chr7:27196267..27196311,-!p1@HOXA7!0.38!1.40!HOXA7;;chr7:27934878..27934909,-!p4@JAZF1!0.38!1.40!JAZF1;;chr7:28449015..28449024,+!p6@CREB5!0.38!1.40!CREB5;;chr7:64342913..64342935,+!p2@ZNF273!0.38!1.40!ZNF273;;chr7:99680193..99680204,-!p2@ZNF3!0.38!1.40!ZNF3;;chr8:106331769..106331772,+!p8@ZFPM2!0.38!1.40!ZFPM2;;chr8:128747729..128747748,+!p14@MYC!0.38!1.40!MYC;;chr8:135613895..135613921,-!p8@ZFAT!0.38!1.40!ZFAT;;chr8:55370693..55370704,+!p4@SOX17!0.38!1.40!SOX17;;chr8:72756251..72756262,-!p12@MSC!0.38!1.40!MSC;;chr3:185826855..185826911,-!p1@ETV5!0.37!57.50!ETV5;;chr2:219524310..219524385,-!p1@ZNF142!0.37!30.85!ZNF142;;chr14:74226783..74226819,-!p4@C14orf43!0.37!9.82!C14orf43;;chr9:35732561..35732587,+!p3@CREB3!0.37!8.41!CREB3;;chr14:21994449..21994524,-!p2@SALL2!0.37!5.61!SALL2;;chr16:29817231..29817290,+!p10@MAZ!0.37!5.61!MAZ;;chr19:19516507..19516539,+!p7@GATAD2A!0.37!5.61!GATAD2A;;chr1:27022839..27022890,+!p3@ARID1A!0.37!5.61!ARID1A;;chr22:42229210..42229229,+!p3@SREBF2!0.37!4.21!SREBF2;;chr17:79885633..79885645,-!p4@MAFG!0.37!2.80!MAFG;;chr5:174151553..174151610,+!p1@MSX2!0.37!2.80!MSX2;;chrX:48900871..48900890,-!p1@TFE3!0.36!107.99!TFE3;;chr19:3572925..3573014,+!p1@HMG20B!0.36!60.30!HMG20B;;chr16:67867749..67867852,-!p1@CENPT!0.36!47.68!CENPT;;chr19:42724436..42724507,+!p1@ZNF526!0.36!16.83!ZNF526;;chr11:65479702..65479731,+!p1@KAT5!0.36!12.62!KAT5;;chr6:34205372..34205412,+!p5@HMGA1!0.36!9.82!HMGA1;;chr19:19516464..19516492,+!p4@GATAD2A!0.36!9.82!GATAD2A;;chr21:47063625..47063658,+!p1@PCBP3!0.36!8.41!PCBP3;;chr19:58951496..58951539,-!p1@ZNF132!0.36!4.21!ZNF132;;chr15:64752804..64752842,+!p2@ZNF609!0.36!4.21!ZNF609;;chr19:3572908..3572917,+!p3@HMG20B!0.36!2.80!HMG20B;;chr2:28616316..28616327,+!p5@FOSL2!0.36!2.80!FOSL2;;chr6:45390002..45390023,+!p6@RUNX2!0.36!2.80!RUNX2;;chr7:150076370..150076396,+!p2@ZNF775!0.36!2.80!ZNF775;;chr10:114710060..114710069,+!p5@TCF7L2!0.36!2.80!TCF7L2;;chr10:114710553..114710585,+!p6@TCF7L2!0.36!2.80!TCF7L2;;chr2:70314601..70314622,+!p1@PCBP1!0.35!472.61!PCBP1;;chr3:5021113..5021180,+!p1@BHLHE40!0.35!143.05!BHLHE40;;chr2:27357479..27357524,-!p1@PREB!0.35!57.50!PREB;;chr8:145159415..145159438,+!p2@MAF1!0.35!39.27!MAF1;;chr2:70314849..70314860,+!p3@PCBP1!0.35!29.45!PCBP1;;chr1:27022485..27022543,+!p1@ARID1A!0.35!28.05!ARID1A;;chr9:35732592..35732640,+!p1@CREB3!0.35!26.65!CREB3;;chr9:14314566..14314618,-!p1@NFIB!0.35!23.84!NFIB;;chr20:62258402..62258464,-!p1@GMEB2!0.35!22.44!GMEB2;;chr11:62521614..62521646,-!p1@ZBTB3!0.35!9.82!ZBTB3;;chr1:161015676..161015694,-!p3@USF1!0.35!7.01!USF1;;chrX:106960180..106960197,-!p2@TSC22D3!0.35!7.01!TSC22D3;;chrX:129244840..129244881,-!p2@ELF4!0.35!7.01!ELF4;;chr3:185826764..185826803,-!p2@ETV5!0.35!7.01!ETV5;;chr17:59477233..59477263,+!p1@TBX2!0.35!5.61!TBX2;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I4!0.31!12.62!GLI4;;chr6:41040923..41040952,+!p2@NFYA!0.31!4.21!NFYA;;chr7:6676986..6677005,+!p2@ENST00000427912!0.31!4.21!ZNF316;;chr19:52674853..52674892,-!p2@ZNF836!0.31!4.21!ZNF836;;chr19:20188776..20188826,+!p1@ZNF90!0.31!4.21!ZNF90;;chr9:137218362..137218385,+!p4@RXRA!0.31!4.21!RXRA;;chr1:151032142..151032195,+!p5@MLLT11!0.31!2.80!MLLT11;;chr1:26496459..26496470,+!p2@ZNF593!0.31!2.80!ZNF593;;chr1:33721873..33721898,+!p3@ZNF362!0.31!2.80!ZNF362;;chr20:48807456..48807475,+!p3@CEBPB!0.31!2.80!CEBPB;;chr2:208030886..208030917,-!p4@KLF7!0.31!2.80!KLF7;;chr3:178789622..178789633,-!p3@ZMAT3!0.31!2.80!ZMAT3;;chr7:27135591..27135658,-!p1@HOXA1!0.31!2.80!HOXA1;;chr9:116638634..116638664,+!p2@ZNF618!0.31!2.80!ZNF618;;chr17:61920116..61920131,-!p5@SMARCD2!0.31!2.80!SMARCD2;;chr12:53853054..53853092,+!p6@PCBP2!0.31!2.80!PCBP2;;chr12:57400227..57400245,-!p2@ZBTB39!0.31!2.80!ZBTB39;;chr2:75938128..75938135,-!p3@GCFC2!0.31!1.40!GCFC2;;chr1:221052840..221052875,+!p4@HLX!0.31!1.40!HLX;;chr16:73081974..73082002,-!p7@ZFHX3!0.31!1.40!ZFHX3;;chr17:38256695..38256706,-!p7@NR1D1!0.31!1.40!NR1D1;;chr7:111846777..111846804,+!p2@ZNF277!0.31!1.40!ZNF277;;chr7:28725715..28725727,+!p3@CREB5!0.31!1.40!CREB5;;chr7:4721998..4722013,+!p3@FOXK1!0.31!1.40!FOXK1;;chr14:69259772..69259790,-!p1@ZFP36L1!0.30!186.52!ZFP36L1;;chr8:145159376..145159407,+!p1@MAF1!0.30!75.73!MAF1;;chr20:30795511..30795562,-!p1@PLAGL2!0.30!32.26!PLAGL2;;chr17:61920023..61920110,-!p1@SMARCD2!0.30!25.24!SMARCD2;;chr1:44679113..44679152,+!p1@DMAP1!0.30!14.02!DMAP1;;chr9:4300050..4300118,-!p1@GLIS3!0.30!11.22!GLIS3;;chr11:65687158..65687216,+!p4@DRAP1!0.30!9.82!DRAP1;;chr9:116638565..116638606,+!p1@ZNF618!0.30!7.01!ZNF618;;chr7:28448965..28448994,+!p2@CREB5!0.30!5.61!CREB5;;chr2:157198916..157198978,-!p2@NR4A2!0.30!5.61!NR4A2;;chr2:27357446..27357475,-!p2@PREB!0.30!5.61!PREB;;chr18:77155922..77155939,+!p1@NFATC1!0.30!4.21!NFATC1;;chr16:30596963..30596999,-!p3@ZNF785!0.30!2.80!ZNF785;;chr16:4322948..4322975,-!p3@TFAP4!0.30!2.80!TFAP4;;chr19:4065848..4065909,-!p4@ZBTB7A!0.30!2.80!ZBTB7A;;chr3:71632840..71632857,-!p10@FOXP1!0.30!2.80!FOXP1;;chr4:146402843..146402864,+!p3@SMAD1!0.30!2.80!SMAD1;;chr13:72441315..72441454,-!p1@DACH1!0.30!2.80!DACH1;;chr14:23755247..23755278,-!p2@HOMEZ!0.30!2.80!HOMEZ;;chr10:8096631..8096660,+!p1@GATA3!0.30!1.40!GATA3;;chr12:66218003..66218018,+!p9@HMGA2!0.30!1.40!HMGA2;;chr13:114238987..114238994,+!p2@TFDP1!0.30!1.40!TFDP1;;chr14:69262947..69262986,-!p3@ZFP36L1!0.30!1.40!ZFP36L1;;chr15:37392576..37392589,-!p12@MEIS2!0.30!1.40!MEIS2;;chr15:77713281..77713290,+!p6@HMG20A!0.30!1.40!HMG20A;;chr19:23299814..23299844,+!p1@ZNF730!0.30!1.40!ZNF730;;chr6:126112039..126112062,+!p8@NCOA7!0.30!1.40!NCOA7;;chr6:85473156..85473210,-!p2@TBX18!0.30!1.40!TBX18;;chrX:129244499..129244506,-!p7@ELF4!0.30!1.40!ELF4;;chr3:170075080..170075089,+!p7@SKIL!0.30!1.40!SKIL;;chr4:81104985..81105005,+!p4@PRDM8!0.30!1.40!PRDM8;;chr19:9785710..9785721,-!p3@ZNF562!0.30!1.40!ZNF562;;chr1:23696448..23696453,-!p5@ZNF436!0.30!1.40!ZNF436;;chr1:41204530..41204541,+!p8@NFYC!0.30!1.40!NFYC;;chr7:148892653..148892729,+!p1@ZNF282!0.29!25.24!ZNF282;;chr1:37940170..37940190,+!p1@ZC3H12A!0.29!21.04!ZC3H12A;;chr19:55987963..55987996,+!p1@ZNF628!0.29!12.62!ZNF628;;chr19:1592714..1592762,-!p1@MBD3!0.29!12.62!MBD3;;chr19:344786..344826,-!p1@MIER2!0.29!9.82!MIER2;;chr12:80084303..80084332,-!p1@PAWR!0.29!9.82!PAWR;;chr6:43138999..43139017,+!p2@SRF!0.29!9.82!SRF;;chr19:56152437..56152467,+!p3@ZNF580!0.29!8.41!ZNF580;;chr16:30583017..30583064,-!p1@ZNF688!0.29!8.41!ZNF688;;chr1:8483756..8483809,-!p5@RERE!0.29!4.21!RERE;;chr1:8483821..8483845,-!p11@RERE!0.29!2.80!RERE;;chr19:19617430..19617443,+!p9@GATAD2A!0.29!2.80!GATAD2A;;chr5:76383133..76383186,-!p2@ZBED3!0.29!2.80!ZBED3;;chr3:114343826..114343869,-!p4@ZBTB20!0.29!2.80!ZBTB20;;chr17:61919812..61919833,-!p6@SMARCD2!0.29!1.40!SMARCD2;;chr18:6414884..6414942,-!p1@L3MBTL4!0.29!1.40!L3MBTL4;;chr19:35759387..35759398,+!p6@USF2!0.29!1.40!USF2;;chr10:104155659..104155676,+!p4@NFKB2!0.29!1.40!NFKB2;;chr11:19262486..19262512,-!p4@E2F8!0.29!1.40!E2F8;;chr14:105927191..105927216,+!p6@MTA1!0.29!1.40!MTA1;;chr14:64970662..64970688,+!p8@ZBTB1!0.29!1.40!ZBTB1;;chr1:211432784..211432796,+!p8@RCOR3!0.29!1.40!RCOR3;;chr8:116681275..116681290,-!p11@TRPS1!0.29!1.40!TRPS1;;chr8:72756023..72756055,-!p6@MSC!0.29!1.40!MSC;;chr22:41697520..41697613,+!p1@ZC3H7B!0.28!98.17!ZC3H7B;;chr4:2263809..2263854,-!p1@MXD4!0.28!65.91!MXD4;;chr11:65430402..65430431,-!p2@RELA!0.28!44.88!RELA;;chr19:15543484..15543561,-!p1@WIZ!0.28!39.27!WIZ;;chr16:3930681..3930721,-!p1@CREBBP!0.28!29.45!CREBBP;;chr17:42298201..42298284,-!p1@UBTF!0.28!28.05!UBTF;;chr16:69419871..69419927,-!p1@TERF2!0.28!22.44!TERF2;;chr22:41601296..41601355,+!p1@L3MBTL2!0.28!19.63!L3MBTL2;;chr17:4890919..4890985,-!p1@CAMTA2!0.28!15.43!CAMTA2;;chr18:53255415..53255491,-!p1@TCF4!0.28!14.02!TCF4;;chr12:115121962..115121987,-!p1@TBX3!0.28!14.02!TBX3;;chr12:6798616..6798684,-!p2@ZNF384!0.28!11.22!ZNF384;;chr10:104154246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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000182;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000398;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002294;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
|ffid_belonging_in_development=CL:0000134,CL:0000222,CL:0000223
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
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|rna_box=120
|rna_catalog_number=SC5005
|rna_concentration=1.34
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=lot:sc05
|rna_od260/230=
|rna_od260/280=
|rna_position=H8
|rna_rin=9.6
|rna_sample_type=total RNA
|rna_tube_id=120H8
|rna_weight_ug=10
|rnaseq_library_id=SRhi10008.AGTTCC
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=hepatic sinusoidal endothelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.3879867659851e-247!GO:0005737;cytoplasm;1.18435950854799e-168!GO:0043226;organelle;7.86033350842121e-131!GO:0043229;intracellular organelle;9.41406513114132e-131!GO:0043231;intracellular membrane-bound organelle;3.91533334680662e-123!GO:0043227;membrane-bound organelle;6.27293185232964e-123!GO:0044444;cytoplasmic part;5.64157056095295e-120!GO:0044422;organelle part;9.18645010022002e-113!GO:0044446;intracellular organelle part;1.47330472030644e-111!GO:0005515;protein binding;7.22764800315448e-83!GO:0032991;macromolecular complex;3.73201310408954e-71!GO:0005739;mitochondrion;2.73936785587606e-60!GO:0030529;ribonucleoprotein complex;3.79213205969148e-60!GO:0044237;cellular metabolic process;2.67801889694649e-54!GO:0044238;primary metabolic process;5.46680993147189e-54!GO:0043233;organelle lumen;1.90469795211177e-49!GO:0031974;membrane-enclosed lumen;1.90469795211177e-49!GO:0043170;macromolecule metabolic process;1.01978832558848e-46!GO:0031090;organelle membrane;2.41132984185508e-46!GO:0005840;ribosome;1.54889820009386e-44!GO:0019538;protein metabolic process;8.2767851145345e-44!GO:0016043;cellular component organization and biogenesis;9.68671686270467e-41!GO:0044428;nuclear part;1.81277869344232e-40!GO:0044429;mitochondrial part;2.44078536724535e-40!GO:0003735;structural constituent of ribosome;5.99907273838838e-40!GO:0003723;RNA binding;1.51866575872849e-39!GO:0009058;biosynthetic process;1.0724286792644e-38!GO:0006412;translation;2.86144071178555e-38!GO:0044260;cellular macromolecule metabolic process;2.99436105803093e-38!GO:0044267;cellular protein metabolic process;7.42990767870548e-38!GO:0043234;protein complex;1.63750371513757e-36!GO:0044249;cellular biosynthetic process;9.7774838947702e-36!GO:0033279;ribosomal subunit;7.7208128439795e-35!GO:0031967;organelle envelope;4.61438133524573e-34!GO:0031975;envelope;9.35838185929887e-34!GO:0009059;macromolecule biosynthetic process;1.0927823724879e-33!GO:0005634;nucleus;4.83480536357752e-33!GO:0005829;cytosol;1.98101997408083e-31!GO:0005740;mitochondrial envelope;4.2569699625356e-29!GO:0043228;non-membrane-bound organelle;2.2798521706384e-28!GO:0043232;intracellular non-membrane-bound organelle;2.2798521706384e-28!GO:0006996;organelle organization and biogenesis;5.74478532450969e-28!GO:0015031;protein transport;2.58955477151652e-27!GO:0031966;mitochondrial membrane;5.68861807067611e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.14446137386126e-26!GO:0033036;macromolecule localization;3.10746499757279e-26!GO:0031981;nuclear lumen;3.55046481314259e-26!GO:0006396;RNA processing;3.26414824929671e-25!GO:0008104;protein localization;7.10242097927422e-25!GO:0045184;establishment of protein localization;1.08294622199092e-24!GO:0019866;organelle inner membrane;1.388640476775e-24!GO:0046907;intracellular transport;1.25862186649083e-23!GO:0065003;macromolecular complex assembly;2.14292063005281e-23!GO:0005743;mitochondrial inner membrane;3.72110228518942e-23!GO:0022607;cellular component assembly;1.09300165020061e-21!GO:0044445;cytosolic part;5.62287908016471e-21!GO:0016071;mRNA metabolic process;1.6757849877408e-20!GO:0043283;biopolymer metabolic process;8.95286426336718e-20!GO:0005783;endoplasmic reticulum;2.04609352880196e-19!GO:0015934;large ribosomal subunit;2.65188451680485e-19!GO:0044455;mitochondrial membrane part;2.80666091887126e-19!GO:0006886;intracellular protein transport;3.03943967420478e-19!GO:0012505;endomembrane system;1.59808825330591e-18!GO:0008380;RNA splicing;2.16725263995815e-18!GO:0006119;oxidative phosphorylation;2.37112582879351e-18!GO:0006259;DNA metabolic process;3.79584406514123e-18!GO:0006397;mRNA processing;1.61277207200163e-17!GO:0015935;small ribosomal subunit;1.51826212452395e-16!GO:0044432;endoplasmic reticulum part;2.09992603623623e-16!GO:0000166;nucleotide binding;4.53100820805019e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.02566197435561e-15!GO:0005794;Golgi apparatus;1.53616743863605e-15!GO:0005746;mitochondrial respiratory chain;2.06696219627566e-15!GO:0005654;nucleoplasm;2.57888479566062e-15!GO:0048770;pigment granule;3.48840946846232e-15!GO:0042470;melanosome;3.48840946846232e-15!GO:0010467;gene expression;9.84569968846383e-15!GO:0007049;cell cycle;1.47016686967239e-14!GO:0006457;protein folding;2.87628864865727e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.11780446326866e-14!GO:0031980;mitochondrial lumen;3.80464242325282e-14!GO:0005759;mitochondrial matrix;3.80464242325282e-14!GO:0051649;establishment of cellular localization;7.88447559043527e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.66614365146021e-14!GO:0051641;cellular localization;9.64735549623952e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.18322985422436e-13!GO:0003954;NADH dehydrogenase activity;1.18322985422436e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.18322985422436e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.34276839939978e-13!GO:0005681;spliceosome;2.26687118537982e-13!GO:0044451;nucleoplasm part;3.3801478914209e-13!GO:0012501;programmed cell death;5.4886157906514e-13!GO:0043412;biopolymer modification;7.61355201162127e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.6414707948735e-13!GO:0008134;transcription factor binding;8.90568651599203e-13!GO:0006915;apoptosis;9.28031155238075e-13!GO:0051186;cofactor metabolic process;1.23763435911635e-12!GO:0032553;ribonucleotide binding;2.58647211811683e-12!GO:0032555;purine ribonucleotide binding;2.58647211811683e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.76462369816261e-12!GO:0016462;pyrophosphatase activity;3.00950965546454e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;3.07751532364287e-12!GO:0022402;cell cycle process;4.34796473057193e-12!GO:0017111;nucleoside-triphosphatase activity;4.76068581733588e-12!GO:0006464;protein modification process;4.77769237656607e-12!GO:0042775;organelle ATP synthesis coupled electron transport;6.16678524917926e-12!GO:0042773;ATP synthesis coupled electron transport;6.16678524917926e-12!GO:0017076;purine nucleotide binding;6.42076111965095e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.25864513592735e-12!GO:0045271;respiratory chain complex I;7.25864513592735e-12!GO:0005747;mitochondrial respiratory chain complex I;7.25864513592735e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.17799099733807e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.31668830188544e-11!GO:0048523;negative regulation of cellular process;2.43421716194982e-11!GO:0000278;mitotic cell cycle;2.69718978342435e-11!GO:0008219;cell death;2.75568294287777e-11!GO:0016265;death;2.75568294287777e-11!GO:0005789;endoplasmic reticulum membrane;3.64655516556231e-11!GO:0005730;nucleolus;4.62640064879877e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.56602843773298e-11!GO:0005761;mitochondrial ribosome;5.8923745301165e-11!GO:0000313;organellar ribosome;5.8923745301165e-11!GO:0016874;ligase activity;7.66813461321114e-11!GO:0051082;unfolded protein binding;3.14524696804221e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.63870851885913e-10!GO:0016192;vesicle-mediated transport;3.88330866359187e-10!GO:0048519;negative regulation of biological process;3.98373373729041e-10!GO:0000502;proteasome complex (sensu Eukaryota);7.40376276010821e-10!GO:0043687;post-translational protein modification;7.83412633885272e-10!GO:0006605;protein targeting;8.72734262846941e-10!GO:0005793;ER-Golgi intermediate compartment;9.50339736507484e-10!GO:0044265;cellular macromolecule catabolic process;1.40966684329028e-09!GO:0009055;electron carrier activity;1.62659521737493e-09!GO:0006732;coenzyme metabolic process;1.66337929124507e-09!GO:0006323;DNA packaging;1.8031145694868e-09!GO:0032559;adenyl ribonucleotide binding;1.970380895276e-09!GO:0051276;chromosome organization and biogenesis;2.11156756602131e-09!GO:0009057;macromolecule catabolic process;2.39819225926585e-09!GO:0005524;ATP binding;2.39819225926585e-09!GO:0006512;ubiquitin cycle;3.00566993104616e-09!GO:0022618;protein-RNA complex assembly;4.75936966590792e-09!GO:0051726;regulation of cell cycle;5.2295943547368e-09!GO:0030554;adenyl nucleotide binding;5.96137897813519e-09!GO:0006366;transcription from RNA polymerase II promoter;5.98536849495152e-09!GO:0043285;biopolymer catabolic process;7.53318069948763e-09!GO:0048193;Golgi vesicle transport;1.01424120917666e-08!GO:0000074;regulation of progression through cell cycle;1.06942566990146e-08!GO:0003712;transcription cofactor activity;1.21157552387907e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.21157552387907e-08!GO:0000375;RNA splicing, via transesterification reactions;1.21157552387907e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.21157552387907e-08!GO:0044248;cellular catabolic process;1.39596434938449e-08!GO:0006333;chromatin assembly or disassembly;1.66704752900686e-08!GO:0042981;regulation of apoptosis;3.97784056744968e-08!GO:0043067;regulation of programmed cell death;4.13786449013206e-08!GO:0006334;nucleosome assembly;5.40704839271023e-08!GO:0006793;phosphorus metabolic process;6.36547097881448e-08!GO:0006796;phosphate metabolic process;6.36547097881448e-08!GO:0006163;purine nucleotide metabolic process;6.56642476292547e-08!GO:0000785;chromatin;6.9898080973893e-08!GO:0009150;purine ribonucleotide metabolic process;7.48971272920326e-08!GO:0031497;chromatin assembly;7.57818257076619e-08!GO:0006461;protein complex assembly;8.17558529708747e-08!GO:0005788;endoplasmic reticulum lumen;1.36584434282699e-07!GO:0051188;cofactor biosynthetic process;1.38897849158034e-07!GO:0008135;translation factor activity, nucleic acid binding;1.48922267111809e-07!GO:0016740;transferase activity;1.56728319583486e-07!GO:0044427;chromosomal part;1.61037532394664e-07!GO:0006164;purine nucleotide biosynthetic process;1.66066565610952e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.80650904637826e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.8602856172855e-07!GO:0051603;proteolysis involved in cellular protein catabolic process;1.95098456106268e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.97238913663869e-07!GO:0065004;protein-DNA complex assembly;2.14406983566566e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.18616229729642e-07!GO:0019941;modification-dependent protein catabolic process;2.28685459831235e-07!GO:0043632;modification-dependent macromolecule catabolic process;2.28685459831235e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.28685459831235e-07!GO:0044257;cellular protein catabolic process;2.42938295659588e-07!GO:0009259;ribonucleotide metabolic process;2.58984025485547e-07!GO:0005694;chromosome;3.51896102927595e-07!GO:0022403;cell cycle phase;3.55147636485219e-07!GO:0006511;ubiquitin-dependent protein catabolic process;3.57651361960719e-07!GO:0006913;nucleocytoplasmic transport;4.20107567054918e-07!GO:0044431;Golgi apparatus part;4.22546628570702e-07!GO:0016310;phosphorylation;4.22546628570702e-07!GO:0030163;protein catabolic process;4.76788933146727e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.46914943622926e-07!GO:0042254;ribosome biogenesis and assembly;6.04533225985217e-07!GO:0009199;ribonucleoside triphosphate metabolic process;6.13059670852496e-07!GO:0009260;ribonucleotide biosynthetic process;6.15499820745305e-07!GO:0048522;positive regulation of cellular process;7.14241854022034e-07!GO:0051169;nuclear transport;7.35115431467976e-07!GO:0009141;nucleoside triphosphate metabolic process;7.38759650080461e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.010582845833e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.010582845833e-07!GO:0005635;nuclear envelope;9.20281763335451e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.80129767518184e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.14406463247796e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.14406463247796e-06!GO:0009117;nucleotide metabolic process;1.15738027412861e-06!GO:0007067;mitosis;1.44368625935592e-06!GO:0031988;membrane-bound vesicle;1.46408420311359e-06!GO:0006974;response to DNA damage stimulus;1.57205721837125e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.63585485386732e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.63585485386732e-06!GO:0016564;transcription repressor activity;1.78108296430543e-06!GO:0030029;actin filament-based process;2.02794122700519e-06!GO:0003714;transcription corepressor activity;2.04265329749633e-06!GO:0015986;ATP synthesis coupled proton transport;2.56515348230614e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.56515348230614e-06!GO:0000087;M phase of mitotic cell cycle;2.63991835540095e-06!GO:0017038;protein import;2.91717753541924e-06!GO:0007005;mitochondrion organization and biogenesis;3.06400031591103e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.15566707223154e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.15566707223154e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.15728928338153e-06!GO:0016491;oxidoreductase activity;3.66495622841819e-06!GO:0008639;small protein conjugating enzyme activity;3.84572672403526e-06!GO:0003924;GTPase activity;4.17251071314386e-06!GO:0044453;nuclear membrane part;4.29307259799796e-06!GO:0008565;protein transporter activity;4.51144349866833e-06!GO:0019829;cation-transporting ATPase activity;4.58706652574446e-06!GO:0043069;negative regulation of programmed cell death;4.91159730528208e-06!GO:0031965;nuclear membrane;5.08605799674462e-06!GO:0045786;negative regulation of progression through cell cycle;5.27176306175297e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.62132633716277e-06!GO:0003743;translation initiation factor activity;5.96598800325124e-06!GO:0030120;vesicle coat;5.9977807197933e-06!GO:0030662;coated vesicle membrane;5.9977807197933e-06!GO:0051329;interphase of mitotic cell cycle;6.06345918607155e-06!GO:0046034;ATP metabolic process;6.34243726775822e-06!GO:0006260;DNA replication;6.48135852819686e-06!GO:0042623;ATPase activity, coupled;6.74465368153481e-06!GO:0007243;protein kinase cascade;7.00165962151207e-06!GO:0031252;leading edge;7.00941066930398e-06!GO:0043066;negative regulation of apoptosis;7.09923324276288e-06!GO:0004842;ubiquitin-protein ligase activity;7.2119038205935e-06!GO:0016604;nuclear body;8.55555876491272e-06!GO:0001568;blood vessel development;8.5563045062247e-06!GO:0006399;tRNA metabolic process;8.56998727612649e-06!GO:0001944;vasculature development;8.86352660279388e-06!GO:0005905;coated pit;8.93249101905737e-06!GO:0009719;response to endogenous stimulus;9.00734940814727e-06!GO:0005667;transcription factor complex;1.01447945239536e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.05572653144428e-05!GO:0065002;intracellular protein transport across a membrane;1.09530896830053e-05!GO:0045259;proton-transporting ATP synthase complex;1.11106396151938e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.11106396151938e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.11106396151938e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.11106396151938e-05!GO:0019787;small conjugating protein ligase activity;1.12980378682304e-05!GO:0005768;endosome;1.23136804831401e-05!GO:0007010;cytoskeleton organization and biogenesis;1.30544878689357e-05!GO:0009108;coenzyme biosynthetic process;1.4943987885142e-05!GO:0051246;regulation of protein metabolic process;1.5313664571001e-05!GO:0006754;ATP biosynthetic process;1.53849420524011e-05!GO:0006753;nucleoside phosphate metabolic process;1.53849420524011e-05!GO:0031324;negative regulation of cellular metabolic process;1.57421258951791e-05!GO:0008361;regulation of cell size;1.61999034754462e-05!GO:0031410;cytoplasmic vesicle;1.63648537105624e-05!GO:0031982;vesicle;1.637696260014e-05!GO:0051325;interphase;1.76904553270874e-05!GO:0016049;cell growth;1.86495942138227e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.89862506112379e-05!GO:0000139;Golgi membrane;1.91081858364762e-05!GO:0000786;nucleosome;2.06154114884676e-05!GO:0016887;ATPase activity;2.08258497405193e-05!GO:0019899;enzyme binding;2.10740362547391e-05!GO:0006916;anti-apoptosis;2.16580287428038e-05!GO:0048475;coated membrane;2.63832091096719e-05!GO:0030117;membrane coat;2.63832091096719e-05!GO:0048518;positive regulation of biological process;2.76553841134932e-05!GO:0006413;translational initiation;2.85072364551887e-05!GO:0016568;chromatin modification;3.06003913878675e-05!GO:0005762;mitochondrial large ribosomal subunit;3.20340518166559e-05!GO:0000315;organellar large ribosomal subunit;3.20340518166559e-05!GO:0006281;DNA repair;3.2445958202377e-05!GO:0043038;amino acid activation;3.37070317008724e-05!GO:0006418;tRNA aminoacylation for protein translation;3.37070317008724e-05!GO:0043039;tRNA aminoacylation;3.37070317008724e-05!GO:0051301;cell division;3.37356422159003e-05!GO:0006446;regulation of translational initiation;3.4849971937056e-05!GO:0001558;regulation of cell growth;3.63545025275369e-05!GO:0005525;GTP binding;3.76590973017047e-05!GO:0005839;proteasome core complex (sensu Eukaryota);4.02787835900086e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.09757099292586e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.70783510454217e-05!GO:0015630;microtubule cytoskeleton;4.86326617396052e-05!GO:0044262;cellular carbohydrate metabolic process;5.4727350965652e-05!GO:0016881;acid-amino acid ligase activity;7.0726498850412e-05!GO:0016853;isomerase activity;7.45624322457506e-05!GO:0016044;membrane organization and biogenesis;7.45624322457506e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.49966782437612e-05!GO:0005773;vacuole;7.49966782437612e-05!GO:0006888;ER to Golgi vesicle-mediated transport;7.54299377931033e-05!GO:0016779;nucleotidyltransferase activity;8.25553762251456e-05!GO:0008654;phospholipid biosynthetic process;8.88505496532907e-05!GO:0003697;single-stranded DNA binding;9.46467949703788e-05!GO:0031968;organelle outer membrane;0.000106089311517939!GO:0009056;catabolic process;0.000115563934961964!GO:0016563;transcription activator activity;0.000130793586814916!GO:0045454;cell redox homeostasis;0.000172445250579458!GO:0048468;cell development;0.000180999907936882!GO:0006364;rRNA processing;0.000185495587539343!GO:0051789;response to protein stimulus;0.000196669384888011!GO:0006986;response to unfolded protein;0.000196669384888011!GO:0042802;identical protein binding;0.00021281404309841!GO:0033116;ER-Golgi intermediate compartment membrane;0.000213283215136263!GO:0009892;negative regulation of metabolic process;0.000214285312848245!GO:0000279;M phase;0.000219074595195538!GO:0065009;regulation of a molecular function;0.000227218431451052!GO:0008092;cytoskeletal protein binding;0.000237861744928529!GO:0009165;nucleotide biosynthetic process;0.000237945713381846!GO:0004298;threonine endopeptidase activity;0.000240497533127064!GO:0005770;late endosome;0.000244279235440963!GO:0005741;mitochondrial outer membrane;0.000257069739895001!GO:0019867;outer membrane;0.000260068036002987!GO:0006606;protein import into nucleus;0.000262739438325714!GO:0044440;endosomal part;0.000262739438325714!GO:0010008;endosome membrane;0.000262739438325714!GO:0016072;rRNA metabolic process;0.000265151778252002!GO:0006752;group transfer coenzyme metabolic process;0.000271531043016226!GO:0005643;nuclear pore;0.000279358101003883!GO:0048514;blood vessel morphogenesis;0.000279358101003883!GO:0051170;nuclear import;0.000304114887724329!GO:0032561;guanyl ribonucleotide binding;0.000306869662415072!GO:0019001;guanyl nucleotide binding;0.000306869662415072!GO:0007264;small GTPase mediated signal transduction;0.000310546936717863!GO:0009060;aerobic respiration;0.000329555072046542!GO:0016481;negative regulation of transcription;0.000334470167304171!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000372452768545401!GO:0050794;regulation of cellular process;0.000405930687438219!GO:0000323;lytic vacuole;0.000462117374354599!GO:0005764;lysosome;0.000462117374354599!GO:0000245;spliceosome assembly;0.000554996334769853!GO:0030867;rough endoplasmic reticulum membrane;0.000559349724807878!GO:0006950;response to stress;0.000571125738601636!GO:0046930;pore complex;0.000581045853504344!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000643886881645769!GO:0015399;primary active transmembrane transporter activity;0.000643886881645769!GO:0008632;apoptotic program;0.000696019411671326!GO:0016787;hydrolase activity;0.00071291180030884!GO:0001525;angiogenesis;0.000770141332550174!GO:0016607;nuclear speck;0.000837597549588026!GO:0040008;regulation of growth;0.000877208433694616!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00090921502450061!GO:0008286;insulin receptor signaling pathway;0.000922397951190355!GO:0030176;integral to endoplasmic reticulum membrane;0.000963796296962244!GO:0005769;early endosome;0.000996044675213048!GO:0045941;positive regulation of transcription;0.00102390267078844!GO:0032446;protein modification by small protein conjugation;0.00102926461769193!GO:0005798;Golgi-associated vesicle;0.00103382607909555!GO:0003899;DNA-directed RNA polymerase activity;0.00107205094341671!GO:0003676;nucleic acid binding;0.00107948404072439!GO:0016567;protein ubiquitination;0.00114440889184526!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00118086569441248!GO:0046474;glycerophospholipid biosynthetic process;0.00130463125344632!GO:0045333;cellular respiration;0.00132753195219678!GO:0005048;signal sequence binding;0.00134745993879934!GO:0006091;generation of precursor metabolites and energy;0.00145930060890963!GO:0030132;clathrin coat of coated pit;0.00145930060890963!GO:0043681;protein import into mitochondrion;0.00148648510102265!GO:0007242;intracellular signaling cascade;0.0015198115199136!GO:0016859;cis-trans isomerase activity;0.00155162584831699!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0015989708348119!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0016606537401202!GO:0030133;transport vesicle;0.00181064719970814!GO:0000151;ubiquitin ligase complex;0.00185628193138985!GO:0008047;enzyme activator activity;0.00194326469377236!GO:0008250;oligosaccharyl transferase complex;0.00196477996386509!GO:0006897;endocytosis;0.00197947227721554!GO:0010324;membrane invagination;0.00197947227721554!GO:0007006;mitochondrial membrane organization and biogenesis;0.00205475815966692!GO:0046467;membrane lipid biosynthetic process;0.00213282262675809!GO:0051427;hormone receptor binding;0.00214955137490661!GO:0008610;lipid biosynthetic process;0.00217602927178974!GO:0043623;cellular protein complex assembly;0.00228874870455919!GO:0006626;protein targeting to mitochondrion;0.0023043101604496!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00239242540879771!GO:0005791;rough endoplasmic reticulum;0.00242104650352664!GO:0019843;rRNA binding;0.00246424783764702!GO:0043566;structure-specific DNA binding;0.00251548074213548!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00256551568137362!GO:0045792;negative regulation of cell size;0.00267967400390207!GO:0006099;tricarboxylic acid cycle;0.00278745732427624!GO:0046356;acetyl-CoA catabolic process;0.00278745732427624!GO:0005774;vacuolar membrane;0.00278985774600459!GO:0043488;regulation of mRNA stability;0.00285395105012808!GO:0043487;regulation of RNA stability;0.00285395105012808!GO:0003713;transcription coactivator activity;0.00289145404343135!GO:0030308;negative regulation of cell growth;0.0029723692274904!GO:0000314;organellar small ribosomal subunit;0.00310276992135059!GO:0005763;mitochondrial small ribosomal subunit;0.00310276992135059!GO:0008283;cell proliferation;0.00312590070973163!GO:0050789;regulation of biological process;0.00317906448623838!GO:0009967;positive regulation of signal transduction;0.00321581799331865!GO:0006740;NADPH regeneration;0.00322874176693476!GO:0006098;pentose-phosphate shunt;0.00322874176693476!GO:0051187;cofactor catabolic process;0.00333063829099051!GO:0000082;G1/S transition of mitotic cell cycle;0.0034060846533078!GO:0035257;nuclear hormone receptor binding;0.00346639251572645!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00355238132245688!GO:0006084;acetyl-CoA metabolic process;0.00370262148237234!GO:0051920;peroxiredoxin activity;0.00372776732424056!GO:0007346;regulation of progression through mitotic cell cycle;0.00372776732424056!GO:0043284;biopolymer biosynthetic process;0.00386544029928549!GO:0005885;Arp2/3 protein complex;0.00394057310850523!GO:0051087;chaperone binding;0.00406715097588725!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00411208113292164!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00416454223925943!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00416454223925943!GO:0005813;centrosome;0.00425728955093595!GO:0033673;negative regulation of kinase activity;0.00435937223482602!GO:0006469;negative regulation of protein kinase activity;0.00435937223482602!GO:0018196;peptidyl-asparagine modification;0.00445502533070706!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00445502533070706!GO:0031589;cell-substrate adhesion;0.00447972378412263!GO:0017166;vinculin binding;0.00447972378412263!GO:0043492;ATPase activity, coupled to movement of substances;0.00461448439805668!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00482442297632955!GO:0051348;negative regulation of transferase activity;0.00490131843948617!GO:0030659;cytoplasmic vesicle membrane;0.00493374466964589!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00497967582422991!GO:0016126;sterol biosynthetic process;0.00498894290195037!GO:0006414;translational elongation;0.00504285233123361!GO:0031301;integral to organelle membrane;0.00527770668540897!GO:0045893;positive regulation of transcription, DNA-dependent;0.00530585216710411!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00545526412653203!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00548945563315861!GO:0045892;negative regulation of transcription, DNA-dependent;0.0054996905257543!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00560441147946472!GO:0015002;heme-copper terminal oxidase activity;0.00560441147946472!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00560441147946472!GO:0004129;cytochrome-c oxidase activity;0.00560441147946472!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00562307021099058!GO:0050790;regulation of catalytic activity;0.00613119988155273!GO:0044437;vacuolar part;0.00617306766439287!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00636480031073922!GO:0006778;porphyrin metabolic process;0.00636480031073922!GO:0033013;tetrapyrrole metabolic process;0.00636480031073922!GO:0005815;microtubule organizing center;0.00645582166138627!GO:0051101;regulation of DNA binding;0.00666469692577475!GO:0001952;regulation of cell-matrix adhesion;0.00666905542385748!GO:0008026;ATP-dependent helicase activity;0.00668035251987907!GO:0019318;hexose metabolic process;0.00688087716281474!GO:0030041;actin filament polymerization;0.00691428534850631!GO:0015992;proton transport;0.00698193301314954!GO:0006818;hydrogen transport;0.00704540477504303!GO:0051252;regulation of RNA metabolic process;0.00704540477504303!GO:0009109;coenzyme catabolic process;0.00722906439628876!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00723363056886188!GO:0046489;phosphoinositide biosynthetic process;0.00733746314211675!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00743163102902101!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00743163102902101!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00743163102902101!GO:0006509;membrane protein ectodomain proteolysis;0.00744493338011287!GO:0033619;membrane protein proteolysis;0.00744493338011287!GO:0005765;lysosomal membrane;0.00756149789320611!GO:0030880;RNA polymerase complex;0.00759791157898138!GO:0031543;peptidyl-proline dioxygenase activity;0.00796178230496365!GO:0006839;mitochondrial transport;0.0081285652701196!GO:0016301;kinase activity;0.00813189189984251!GO:0005684;U2-dependent spliceosome;0.00813189189984251!GO:0001726;ruffle;0.0085715140593616!GO:0030658;transport vesicle membrane;0.00867390027239467!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00881469579457205!GO:0016860;intramolecular oxidoreductase activity;0.00905737209747265!GO:0016070;RNA metabolic process;0.0096334475360043!GO:0030118;clathrin coat;0.00970938815308538!GO:0004576;oligosaccharyl transferase activity;0.00975643188297733!GO:0003779;actin binding;0.00992741805115764!GO:0045926;negative regulation of growth;0.0101892518514611!GO:0022890;inorganic cation transmembrane transporter activity;0.010276785866827!GO:0051270;regulation of cell motility;0.0104621567309733!GO:0043086;negative regulation of catalytic activity;0.0104635479205662!GO:0006790;sulfur metabolic process;0.0106177941500469!GO:0006979;response to oxidative stress;0.0107487008804112!GO:0044433;cytoplasmic vesicle part;0.0111659209272426!GO:0022415;viral reproductive process;0.0113642639724201!GO:0031272;regulation of pseudopodium formation;0.0114354964269775!GO:0031269;pseudopodium formation;0.0114354964269775!GO:0031344;regulation of cell projection organization and biogenesis;0.0114354964269775!GO:0031268;pseudopodium organization and biogenesis;0.0114354964269775!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0114354964269775!GO:0031274;positive regulation of pseudopodium formation;0.0114354964269775!GO:0005819;spindle;0.0115001621805957!GO:0004386;helicase activity;0.0117916275388982!GO:0019798;procollagen-proline dioxygenase activity;0.0118891109503872!GO:0007040;lysosome organization and biogenesis;0.0121983208742652!GO:0015036;disulfide oxidoreductase activity;0.0122044178849497!GO:0042168;heme metabolic process;0.0125984376644431!GO:0008637;apoptotic mitochondrial changes;0.0131055961108974!GO:0006779;porphyrin biosynthetic process;0.013253265730866!GO:0033014;tetrapyrrole biosynthetic process;0.013253265730866!GO:0007033;vacuole organization and biogenesis;0.013286864807651!GO:0006403;RNA localization;0.013286864807651!GO:0007265;Ras protein signal transduction;0.0135455156576607!GO:0050657;nucleic acid transport;0.0135455156576607!GO:0051236;establishment of RNA localization;0.0135455156576607!GO:0050658;RNA transport;0.0135455156576607!GO:0048660;regulation of smooth muscle cell proliferation;0.0135501329901545!GO:0004674;protein serine/threonine kinase activity;0.0136998925546384!GO:0030027;lamellipodium;0.0138648950225045!GO:0005100;Rho GTPase activator activity;0.0141501475534872!GO:0045936;negative regulation of phosphate metabolic process;0.0142555661773441!GO:0031072;heat shock protein binding;0.0144169873944537!GO:0048646;anatomical structure formation;0.0145791874547146!GO:0006520;amino acid metabolic process;0.0149611431009561!GO:0007160;cell-matrix adhesion;0.0151101553600823!GO:0001666;response to hypoxia;0.0152236867586992!GO:0006807;nitrogen compound metabolic process;0.0154077405104893!GO:0006458;'de novo' protein folding;0.0157315982010086!GO:0051084;'de novo' posttranslational protein folding;0.0157315982010086!GO:0043021;ribonucleoprotein binding;0.0157389813639353!GO:0005874;microtubule;0.0159203028202876!GO:0005996;monosaccharide metabolic process;0.0159617680006409!GO:0006595;polyamine metabolic process;0.0159617680006409!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0160679813640554!GO:0000428;DNA-directed RNA polymerase complex;0.0160679813640554!GO:0006739;NADP metabolic process;0.0167070310504951!GO:0005096;GTPase activator activity;0.0171462266153619!GO:0007162;negative regulation of cell adhesion;0.0172775321739925!GO:0008139;nuclear localization sequence binding;0.0172829922825482!GO:0005862;muscle thin filament tropomyosin;0.0173950572294439!GO:0000049;tRNA binding;0.0174646714625958!GO:0040011;locomotion;0.0176539508641188!GO:0048487;beta-tubulin binding;0.0176539508641188!GO:0031902;late endosome membrane;0.0183546461326549!GO:0030660;Golgi-associated vesicle membrane;0.0187836759067327!GO:0015980;energy derivation by oxidation of organic compounds;0.019039984880956!GO:0030125;clathrin vesicle coat;0.0193050102779841!GO:0030665;clathrin coated vesicle membrane;0.0193050102779841!GO:0007050;cell cycle arrest;0.0193311181185384!GO:0022408;negative regulation of cell-cell adhesion;0.0199773484005656!GO:0003724;RNA helicase activity;0.0204636239750561!GO:0006695;cholesterol biosynthetic process;0.0204888599797471!GO:0018193;peptidyl-amino acid modification;0.0205393356889115!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0211714859075342!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0211714859075342!GO:0035035;histone acetyltransferase binding;0.0212417358959286!GO:0006082;organic acid metabolic process;0.0218328828448333!GO:0008243;plasminogen activator activity;0.0221029944613515!GO:0043065;positive regulation of apoptosis;0.0223493446963829!GO:0003729;mRNA binding;0.0224285687088666!GO:0006066;alcohol metabolic process;0.0228000571644585!GO:0030119;AP-type membrane coat adaptor complex;0.0228564831058191!GO:0046822;regulation of nucleocytoplasmic transport;0.0232459028725012!GO:0006650;glycerophospholipid metabolic process;0.0232459028725012!GO:0043068;positive regulation of programmed cell death;0.023358776531931!GO:0009893;positive regulation of metabolic process;0.0235911585846022!GO:0030137;COPI-coated vesicle;0.0239598162604004!GO:0001953;negative regulation of cell-matrix adhesion;0.0243208113951978!GO:0006613;cotranslational protein targeting to membrane;0.0243876965013572!GO:0030663;COPI coated vesicle membrane;0.0244168061919507!GO:0030126;COPI vesicle coat;0.0244168061919507!GO:0046426;negative regulation of JAK-STAT cascade;0.0244377882448909!GO:0019752;carboxylic acid metabolic process;0.0244423404643145!GO:0003756;protein disulfide isomerase activity;0.0244423404643145!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0244423404643145!GO:0051235;maintenance of localization;0.0245087898801756!GO:0005092;GDP-dissociation inhibitor activity;0.0247319542645875!GO:0009308;amine metabolic process;0.0248891818533643!GO:0006783;heme biosynthetic process;0.0250747990832218!GO:0006007;glucose catabolic process;0.025147678979264!GO:0051168;nuclear export;0.0261569114623966!GO:0040012;regulation of locomotion;0.0261569114623966!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0263775573037176!GO:0009966;regulation of signal transduction;0.026527357075576!GO:0012506;vesicle membrane;0.0266589576953643!GO:0030433;ER-associated protein catabolic process;0.0267069669997796!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0267069669997796!GO:0033559;unsaturated fatty acid metabolic process;0.0267069669997796!GO:0006636;unsaturated fatty acid biosynthetic process;0.0267069669997796!GO:0008154;actin polymerization and/or depolymerization;0.0275623163145086!GO:0016363;nuclear matrix;0.0276735863387372!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.027795919627829!GO:0006289;nucleotide-excision repair;0.0278345813242715!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0278670049021869!GO:0050178;phenylpyruvate tautomerase activity;0.0279025440694804!GO:0051098;regulation of binding;0.027972729600171!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0284990063113809!GO:0006383;transcription from RNA polymerase III promoter;0.0286364205504339!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.029065782269966!GO:0043281;regulation of caspase activity;0.0291423135065425!GO:0031300;intrinsic to organelle membrane;0.0298151791686327!GO:0005975;carbohydrate metabolic process;0.0298151791686327!GO:0019904;protein domain specific binding;0.0298866317001349!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0301979482827019!GO:0046483;heterocycle metabolic process;0.0304070691588887!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0304070691588887!GO:0016272;prefoldin complex;0.0310022425754708!GO:0006891;intra-Golgi vesicle-mediated transport;0.0311571793206611!GO:0016125;sterol metabolic process;0.0314200226228991!GO:0048659;smooth muscle cell proliferation;0.0321866822540788!GO:0005637;nuclear inner membrane;0.0321866822540788!GO:0046519;sphingoid metabolic process;0.0321866822540788!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0325702328042426!GO:0042326;negative regulation of phosphorylation;0.0326324270284881!GO:0051085;chaperone cofactor-dependent protein folding;0.0326324270284881!GO:0008629;induction of apoptosis by intracellular signals;0.0328360569105852!GO:0030131;clathrin adaptor complex;0.0336593629145792!GO:0003684;damaged DNA binding;0.0337082166383611!GO:0031418;L-ascorbic acid binding;0.0342642227672119!GO:0007266;Rho protein signal transduction;0.0351167170145858!GO:0000902;cell morphogenesis;0.0351186434437009!GO:0032989;cellular structure morphogenesis;0.0351186434437009!GO:0000084;S phase of mitotic cell cycle;0.0356640266828884!GO:0008186;RNA-dependent ATPase activity;0.0358550953333959!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0364936834845644!GO:0048471;perinuclear region of cytoplasm;0.0369162075356352!GO:0016197;endosome transport;0.037168965532118!GO:0030134;ER to Golgi transport vesicle;0.037469027770327!GO:0030100;regulation of endocytosis;0.0375941872392228!GO:0030127;COPII vesicle coat;0.0379088147800608!GO:0012507;ER to Golgi transport vesicle membrane;0.0379088147800608!GO:0005657;replication fork;0.0379804009119362!GO:0000287;magnesium ion binding;0.0379880611877546!GO:0045334;clathrin-coated endocytic vesicle;0.0379965174007034!GO:0035258;steroid hormone receptor binding;0.0385099572224208!GO:0030031;cell projection biogenesis;0.0387815520858853!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0388996512961241!GO:0030508;thiol-disulfide exchange intermediate activity;0.0399640704063026!GO:0006506;GPI anchor biosynthetic process;0.0403487648051577!GO:0000209;protein polyubiquitination;0.0405605816555902!GO:0065007;biological regulation;0.0416788416527007!GO:0032508;DNA duplex unwinding;0.0420049975600873!GO:0032392;DNA geometric change;0.0420049975600873!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0421119640885143!GO:0006611;protein export from nucleus;0.0421119640885143!GO:0005856;cytoskeleton;0.0421119640885143!GO:0040029;regulation of gene expression, epigenetic;0.0426414011958325!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0426414011958325!GO:0001836;release of cytochrome c from mitochondria;0.0426898496358265!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0426898496358265!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0430327148571164!GO:0008538;proteasome activator activity;0.0432416182175732!GO:0051336;regulation of hydrolase activity;0.0433427864681081!GO:0032507;maintenance of cellular protein localization;0.0442211356323521!GO:0016791;phosphoric monoester hydrolase activity;0.0450262117550526!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0455639433996343!GO:0043407;negative regulation of MAP kinase activity;0.0456124188019877!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0456124188019877!GO:0010257;NADH dehydrogenase complex assembly;0.0456124188019877!GO:0033108;mitochondrial respiratory chain complex assembly;0.0456124188019877!GO:0006505;GPI anchor metabolic process;0.0457059286637011!GO:0006733;oxidoreduction coenzyme metabolic process;0.0461880608918892!GO:0030128;clathrin coat of endocytic vesicle;0.0463957039000395!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0463957039000395!GO:0030122;AP-2 adaptor complex;0.0463957039000395!GO:0043433;negative regulation of transcription factor activity;0.0465971668961101!GO:0008033;tRNA processing;0.0469354956417655!GO:0006643;membrane lipid metabolic process;0.0480173263688503!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0484731284388741!GO:0051287;NAD binding;0.0484731284388741!GO:0009303;rRNA transcription;0.0485529705339641!GO:0004680;casein kinase activity;0.0492729559441221!GO:0030833;regulation of actin filament polymerization;0.0493909314147473
|sample_id=11601
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=liver
|top_motifs=ZNF423:2.53205342179;RXRA_VDR{dimer}:1.77437877088;EBF1:1.70078054385;RXR{A,B,G}:1.69162435308;TFAP2{A,C}:1.67010903676;GLI1..3:1.62828583686;SPZ1:1.62442303293;GTF2A1,2:1.61264120938;ESR1:1.4595731688;GZF1:1.43438011552;TLX1..3_NFIC{dimer}:1.41781781947;SRF:1.33685823365;NR5A1,2:1.30153753844;ZNF148:1.27220320147;PPARG:1.25162775316;POU2F1..3:1.20736346318;PBX1:1.20515822991;XCPE1{core}:1.11298322623;TBP:1.10897172199;ESRRA:1.08251217381;bHLH_family:1.0816403223;HES1:1.03221211154;SOX{8,9,10}:1.02938599865;TFCP2:0.982780183881;IKZF1:0.945014758524;TFAP4:0.932202012186;NANOG:0.873757166523;SMAD1..7,9:0.85543934702;ZIC1..3:0.829249280446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.800341920702;SOX17:0.775470792023;RREB1:0.769485765974;ZNF238:0.753122735603;LEF1_TCF7_TCF7L1,2:0.748781485653;NR3C1:0.747170857234;HOX{A5,B5}:0.70793294977;HIC1:0.668720997455;PAX1,9:0.660711914157;TAL1_TCF{3,4,12}:0.610611435178;ZBTB6:0.59442617461;LMO2:0.579599434754;TFAP2B:0.572854973255;REST:0.565230378025;TEAD1:0.564164466107;CRX:0.554482256341;ONECUT1,2:0.53726690489;AR:0.524746323724;NR6A1:0.511753887934;GTF2I:0.498897208859;PATZ1:0.459722740718;HNF4A_NR2F1,2:0.45822334503;SP1:0.400095141315;HAND1,2:0.397314618209;ETS1,2:0.391385314908;MYOD1:0.356695687559;GATA6:0.345681027125;GFI1B:0.342640757981;PAX8:0.334470508402;GCM1,2:0.329667851426;NKX2-3_NKX2-5:0.306013427097;MEF2{A,B,C,D}:0.304817435287;TP53:0.26035069779;GFI1:0.247066858521;NKX3-2:0.243652750999;BACH2:0.211058339055;POU3F1..4:0.207751904623;TOPORS:0.181929175572;NFE2:0.175695091455;FOSL2:0.161661532905;STAT2,4,6:0.153067232946;NFE2L2:0.15270893705;NFATC1..3:0.142202991568;FOXL1:0.129839392173;NFE2L1:0.126617334217;MED-1{core}:0.123580727463;MAFB:0.12188040716;HLF:0.120976522806;UFEwm:0.116814834084;HIF1A:0.102634227651;FOS_FOS{B,L1}_JUN{B,D}:0.0770760953391;MZF1:0.0683307775901;VSX1,2:0.0634385796403;KLF4:0.0533471039302;SOX2:0.0500045034466;NFKB1_REL_RELA:0.0344247221305;LHX3,4:0.0292992033116;SPIB:0.0103798213407;PAX5:0.0102166949832;ARID5B:-0.00133933116921;HNF1A:-0.0228673445319;XBP1:-0.0299828253302;PAX6:-0.0345415001102;RUNX1..3:-0.0731808725115;MTF1:-0.0777447649528;POU6F1:-0.0999439071224;PITX1..3:-0.102972399656;MAZ:-0.127202710242;FOXM1:-0.149963201512;TFDP1:-0.18082718517;MTE{core}:-0.227486267762;SPI1:-0.252676629223;CDC5L:-0.262510992811;FOX{F1,F2,J1}:-0.267863651503;JUN:-0.268089848661;HMX1:-0.280220737356;NHLH1,2:-0.285066269416;MYB:-0.289678609828;PAX3,7:-0.2989320841;RORA:-0.302535829403;PRRX1,2:-0.321068784862;HSF1,2:-0.323489909937;NFIX:-0.335292133202;TBX4,5:-0.342944018651;NFY{A,B,C}:-0.344665684774;E2F1..5:-0.365546860002;PRDM1:-0.367425058903;CEBPA,B_DDIT3:-0.38035914105;RFX1:-0.381395089535;ZNF384:-0.385231433724;CUX2:-0.388294136747;ALX1:-0.397059563225;SOX5:-0.416933994953;TEF:-0.427125522085;AHR_ARNT_ARNT2:-0.431390601254;MYFfamily:-0.431551616561;EGR1..3:-0.441862912057;NKX2-2,8:-0.445415678848;SNAI1..3:-0.467805108225;FOX{I1,J2}:-0.4743084671;NANOG{mouse}:-0.475082593536;STAT5{A,B}:-0.485352165749;IKZF2:-0.489066627466;ZFP161:-0.495133145771;BREu{core}:-0.51321740356;POU5F1:-0.525816676414;ATF6:-0.529548204857;ATF2:-0.54805561825;FOX{D1,D2}:-0.553068570925;HOXA9_MEIS1:-0.55624299812;POU1F1:-0.579669535393;HOX{A6,A7,B6,B7}:-0.595180555039;HOX{A4,D4}:-0.603099645463;OCT4_SOX2{dimer}:-0.604896945866;EP300:-0.607176845547;ALX4:-0.608341053333;PAX2:-0.609005581221;ZEB1:-0.617874218227;NFIL3:-0.664079789035;TLX2:-0.69718726696;DBP:-0.716418921053;EVI1:-0.727236739574;NKX3-1:-0.73724097266;FOXP3:-0.751455911139;GATA4:-0.759035544427;ELF1,2,4:-0.800898351353;FOXQ1:-0.815540827698;FOXA2:-0.820107502279;ZNF143:-0.847752697623;MYBL2:-0.868140994618;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.881519741953;IRF1,2:-0.892645852201;ATF4:-0.906104967931;RBPJ:-0.910076562088;NKX2-1,4:-0.920641489484;CDX1,2,4:-0.925266854492;ADNP_IRX_SIX_ZHX:-0.931292888581;EN1,2:-0.936826098084;FOXD3:-0.962422535705;DMAP1_NCOR{1,2}_SMARC:-0.991204110094;NR1H4:-1.00981066112;HBP1_HMGB_SSRP1_UBTF:-1.08224648987;TGIF1:-1.10913165818;T:-1.13024770957;CREB1:-1.14225038091;IRF7:-1.16486898864;FOXP1:-1.19129346635;YY1:-1.23427147816;PAX4:-1.26453724529;FOXO1,3,4:-1.27051147556;NRF1:-1.281130612;ATF5_CREB3:-1.29561378056;HMGA1,2:-1.31799395319;ZBTB16:-1.41430434161;AIRE:-1.41852784223;RFX2..5_RFXANK_RFXAP:-1.45698316545;SREBF1,2:-1.64534122891;STAT1,3:-1.65025867123;BPTF:-1.6753579504;NKX6-1,2:-1.68644214645;PDX1:-1.95357524526;ELK1,4_GABP{A,B1}:-2.2081001702;FOXN1:-2.63768089695
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11601-120H8;search_select_hide=table117:FF:11601-120H8
}}
}}

Latest revision as of 18:11, 4 June 2020

Name:Hepatic Sinusoidal Endothelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12092
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexNA
ageNA
cell typehepatic sinusoidal endothelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:sc05
catalog numberSC5005
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004955
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12092 CAGE DRX008302 DRR009174
Accession ID Hg19

Library idBAMCTSS
CNhs12092 DRZ000599 DRZ001984
Accession ID Hg38

Library idBAMCTSS
CNhs12092 DRZ011949 DRZ013334
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004955
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.AGTTCC sRNA-Seq DRX037119 DRR041485
Accession ID Hg19

Library idBAMCTSS
SRhi10008.AGTTCC DRZ007127


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.157
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.157
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.974
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.237
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0564
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.491
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.253
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.381
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0885
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0489
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.548
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0117
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.458
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.381
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.001
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.381
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.381
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12092

Jaspar motifP-value
MA0002.20.168
MA0003.10.186
MA0004.10.523
MA0006.10.329
MA0007.10.0582
MA0009.10.705
MA0014.10.627
MA0017.10.228
MA0018.20.0101
MA0019.10.317
MA0024.10.0371
MA0025.10.921
MA0027.10.419
MA0028.14.2207e-4
MA0029.10.259
MA0030.10.0964
MA0031.10.0381
MA0035.20.0183
MA0038.10.646
MA0039.20.992
MA0040.10.453
MA0041.10.36
MA0042.10.82
MA0043.18.13913e-4
MA0046.10.07
MA0047.20.411
MA0048.10.766
MA0050.11.05287e-4
MA0051.10.00358
MA0052.10.0463
MA0055.10.625
MA0057.10.212
MA0058.10.636
MA0059.10.272
MA0060.10.495
MA0061.10.171
MA0062.21.19908e-7
MA0065.20.0441
MA0066.10.0533
MA0067.10.0799
MA0068.10.868
MA0069.10.907
MA0070.10.00846
MA0071.10.021
MA0072.10.557
MA0073.10.747
MA0074.10.374
MA0076.14.76126e-6
MA0077.10.00391
MA0078.10.0274
MA0079.20.917
MA0080.20.658
MA0081.10.223
MA0083.11.18894e-4
MA0084.10.945
MA0087.10.516
MA0088.10.811
MA0090.10.0682
MA0091.10.0899
MA0092.10.276
MA0093.10.598
MA0099.22.598e-5
MA0100.10.246
MA0101.10.51
MA0102.27.6544e-5
MA0103.10.472
MA0104.20.848
MA0105.10.216
MA0106.10.158
MA0107.10.192
MA0108.22.46255e-12
MA0111.10.646
MA0112.20.00369
MA0113.10.102
MA0114.10.483
MA0115.10.622
MA0116.10.144
MA0117.10.365
MA0119.10.0675
MA0122.10.831
MA0124.10.501
MA0125.10.773
MA0131.10.0715
MA0135.10.0722
MA0136.10.0419
MA0137.20.0578
MA0138.20.182
MA0139.10.986
MA0140.10.0574
MA0141.10.033
MA0142.10.476
MA0143.10.664
MA0144.10.724
MA0145.10.189
MA0146.10.102
MA0147.10.879
MA0148.10.239
MA0149.10.284
MA0150.10.178
MA0152.10.549
MA0153.10.372
MA0154.10.053
MA0155.10.041
MA0156.10.0306
MA0157.10.395
MA0159.10.316
MA0160.10.184
MA0162.10.0992
MA0163.10.149
MA0164.10.461
MA0258.10.00858
MA0259.10.779



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12092

Novel motifP-value
10.655
100.521
1000.979
1010.651
1020.943
1030.621
1040.22
1050.0503
1060.0175
1070.00964
1080.286
1090.184
110.0785
1100.149
1110.8
1120.402
1130.951
1140.327
1150.763
1160.21
1170.941
1180.871
1190.228
120.636
1200.0995
1210.819
1220.611
1230.396
1240.864
1250.382
1260.799
1270.379
1280.0249
1290.196
130.431
1300.246
1310.56
1320.235
1330.289
1340.881
1350.138
1360.411
1370.538
1380.978
1390.087
140.865
1400.979
1410.879
1420.345
1430.00113
1440.856
1450.0855
1460.226
1470.251
1480.79
1490.0232
150.596
1500.189
1510.339
1520.0501
1530.382
1540.477
1550.844
1560.573
1570.146
1580.724
1590.822
160.241
1600.00862
1610.28
1620.206
1630.757
1640.89
1650.126
1660.921
1670.184
1680.341
1690.0283
170.123
180.0888
190.0759
20.214
200.363
210.714
220.113
230.0607
240.344
250.646
260.0628
270.206
280.364
290.893
30.488
300.31
310.388
329.41698e-4
330.542
340.147
350.659
360.607
370.291
380.236
390.302
40.252
400.0204
410.301
420.605
430.199
440.408
450.212
460.127
470.411
480.202
490.244
50.663
500.459
510.266
520.353
530.937
540.302
550.631
560.247
570.231
580.991
590.00797
60.752
600.239
610.811
620.73
630.21
640.201
650.0199
660.408
670.54
680.00372
690.0115
70.778
700.138
710.228
720.737
730.0595
740.877
750.914
760.265
770.0431
780.517
790.0209
80.0674
800.4
810.816
820.457
830.692
840.133
850.0528
860.84
870.433
880.548
890.109
90.139
900.0173
910.0826
920.262
930.6
940.462
950.228
960.997
970.434
980.4
990.0972



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12092


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000215 (barrier cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000182 (hepatocyte)
0002262 (endothelial cell of sinusoid)
1000398 (endothelial cell of hepatic sinusoid)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0001007 (digestive system)
0000055 (vessel)
0001281 (hepatic sinusoid)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0000353 (parenchyma)
0003497 (abdomen blood vessel)
0003909 (sinusoid)
0005177 (trunk region element)
0002365 (exocrine gland)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0005172 (abdomen element)
0006925 (digestive gland)
0002049 (vasculature)
0002530 (gland)
0003835 (abdominal segment blood vessel)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005173 (abdominal segment element)
0004535 (cardiovascular system)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0001280 (liver parenchyma)
0004647 (liver lobule)
0002330 (exocrine system)
0004537 (blood vasculature)
0000916 (abdomen)
0002423 (hepatobiliary system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000076 (hepatic sinusoidal endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
CL:0000223 (endodermal cell)

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