FF:11561-120D4: Difference between revisions

Latest revision as of 18:09, 4 June 2020

Name:	Fibroblast - skin normal, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11914
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	NA
sex	M
age	3 year old child
cell type	fibroblast
cell line	NA
company	Coriell
collaboration	Splicing (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	custom
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004977

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11914		CAGE		DRX008288		DRR009160

Accession ID Hg19

Library id		BAM		CTSS
CNhs11914		DRZ000585		DRZ001970

Accession ID Hg38

Library id		BAM		CTSS
CNhs11914		DRZ011935		DRZ013320

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.123
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.23
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.587
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0476
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.3
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0404
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.365
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.237
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.285
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.226
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.143
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0351
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0404
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.25
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.116
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.172
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.635
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.143
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.88
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.455
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.604
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.625
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11914

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.241
MA0003.1	MA0003.1	0.641
MA0004.1	MA0004.1	0.00118
MA0006.1	MA0006.1	0.0574
MA0007.1	MA0007.1	0.756
MA0009.1	MA0009.1	0.545
MA0014.1	MA0014.1	0.195
MA0017.1	MA0017.1	0.148
MA0018.2	MA0018.2	0.00112
MA0019.1	MA0019.1	0.389
MA0024.1	MA0024.1	0.571
MA0025.1	MA0025.1	0.0717
MA0027.1	MA0027.1	0.805
MA0028.1	MA0028.1	0.472
MA0029.1	MA0029.1	0.419
MA0030.1	MA0030.1	0.054
MA0031.1	MA0031.1	0.0987
MA0035.2	MA0035.2	0.0535
MA0038.1	MA0038.1	0.702
MA0039.2	MA0039.2	0.0592
MA0040.1	MA0040.1	0.441
MA0041.1	MA0041.1	0.661
MA0042.1	MA0042.1	0.951
MA0043.1	MA0043.1	0.00347
MA0046.1	MA0046.1	0.618
MA0047.2	MA0047.2	0.26
MA0048.1	MA0048.1	0.0041
MA0050.1	MA0050.1	4.90195e-5
MA0051.1	MA0051.1	0.00656
MA0052.1	MA0052.1	0.228
MA0055.1	MA0055.1	0.0609
MA0057.1	MA0057.1	0.348
MA0058.1	MA0058.1	6.07594e-4
MA0059.1	MA0059.1	0.209
MA0060.1	MA0060.1	0.0982
MA0061.1	MA0061.1	0.0584
MA0062.2	MA0062.2	0.168
MA0065.2	MA0065.2	0.116
MA0066.1	MA0066.1	0.34
MA0067.1	MA0067.1	0.0314
MA0068.1	MA0068.1	0.61
MA0069.1	MA0069.1	0.0139
MA0070.1	MA0070.1	0.442
MA0071.1	MA0071.1	0.746
MA0072.1	MA0072.1	0.777
MA0073.1	MA0073.1	0.942
MA0074.1	MA0074.1	0.881
MA0076.1	MA0076.1	0.391
MA0077.1	MA0077.1	0.826
MA0078.1	MA0078.1	0.899
MA0079.2	MA0079.2	0.726
MA0080.2	MA0080.2	2.36182e-7
MA0081.1	MA0081.1	0.0218
MA0083.1	MA0083.1	0.00308
MA0084.1	MA0084.1	0.313
MA0087.1	MA0087.1	0.971
MA0088.1	MA0088.1	0.684
MA0090.1	MA0090.1	6.42359e-4
MA0091.1	MA0091.1	0.209
MA0092.1	MA0092.1	0.223
MA0093.1	MA0093.1	0.00621
MA0099.2	MA0099.2	0.326
MA0100.1	MA0100.1	0.6
MA0101.1	MA0101.1	8.58832e-5
MA0102.2	MA0102.2	0.0726
MA0103.1	MA0103.1	3.59354e-6
MA0104.2	MA0104.2	2.6611e-4
MA0105.1	MA0105.1	0.464
MA0106.1	MA0106.1	0.186
MA0107.1	MA0107.1	2.08465e-4
MA0108.2	MA0108.2	0.0211
MA0111.1	MA0111.1	0.0623
MA0112.2	MA0112.2	0.0971
MA0113.1	MA0113.1	0.606
MA0114.1	MA0114.1	0.0282
MA0115.1	MA0115.1	0.273
MA0116.1	MA0116.1	0.403
MA0117.1	MA0117.1	0.913
MA0119.1	MA0119.1	0.3
MA0122.1	MA0122.1	0.739
MA0124.1	MA0124.1	0.861
MA0125.1	MA0125.1	0.746
MA0131.1	MA0131.1	0.897
MA0135.1	MA0135.1	0.638
MA0136.1	MA0136.1	4.77179e-7
MA0137.2	MA0137.2	0.838
MA0138.2	MA0138.2	0.423
MA0139.1	MA0139.1	0.608
MA0140.1	MA0140.1	0.294
MA0141.1	MA0141.1	0.474
MA0142.1	MA0142.1	0.2
MA0143.1	MA0143.1	0.737
MA0144.1	MA0144.1	0.65
MA0145.1	MA0145.1	0.103
MA0146.1	MA0146.1	0.741
MA0147.1	MA0147.1	0.00779
MA0148.1	MA0148.1	0.226
MA0149.1	MA0149.1	0.45
MA0150.1	MA0150.1	0.0572
MA0152.1	MA0152.1	0.0101
MA0153.1	MA0153.1	0.449
MA0154.1	MA0154.1	0.549
MA0155.1	MA0155.1	0.619
MA0156.1	MA0156.1	0.0192
MA0157.1	MA0157.1	0.351
MA0159.1	MA0159.1	0.81
MA0160.1	MA0160.1	0.0295
MA0162.1	MA0162.1	0.082
MA0163.1	MA0163.1	0.0663
MA0164.1	MA0164.1	0.753
MA0258.1	MA0258.1	0.809
MA0259.1	MA0259.1	0.29

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11914

Novel motif	Logo	P-value
1	1	0.831
10	10	0.905
100	100	0.242
101	101	0.137
102	102	0.232
103	103	0.541
104	104	0.706
105	105	0.551
106	106	0.847
107	107	0.917
108	108	0.736
109	109	0.846
11	11	0.796
110	110	0.49
111	111	0.385
112	112	0.945
113	113	0.00275
114	114	0.813
115	115	0.59
116	116	0.582
117	117	0.668
118	118	0.442
119	119	0.343
12	12	0.646
120	120	0.675
121	121	0.604
122	122	0.209
123	123	5.25223e-6
124	124	0.313
125	125	0.912
126	126	0.241
127	127	0.519
128	128	0.401
129	129	0.455
13	13	0.814
130	130	0.161
131	131	0.521
132	132	0.382
133	133	0.552
134	134	0.0723
135	135	0.11
136	136	0.119
137	137	0.618
138	138	0.382
139	139	0.103
14	14	0.302
140	140	0.0749
141	141	0.0853
142	142	0.393
143	143	0.869
144	144	0.788
145	145	0.526
146	146	0.861
147	147	0.39
148	148	0.0793
149	149	0.00777
15	15	0.363
150	150	0.219
151	151	0.389
152	152	0.0344
153	153	0.247
154	154	0.584
155	155	0.00279
156	156	0.881
157	157	0.0975
158	158	0.00795
159	159	0.326
16	16	0.225
160	160	0.681
161	161	0.0901
162	162	0.559
163	163	0.877
164	164	0.752
165	165	0.112
166	166	0.187
167	167	0.148
168	168	0.397
169	169	0.126
17	17	0.999
18	18	0.107
19	19	0.0127
2	2	0.23
20	20	0.424
21	21	0.134
22	22	0.501
23	23	0.855
24	24	0.359
25	25	0.499
26	26	0.504
27	27	0.867
28	28	0.639
29	29	0.708
3	3	0.588
30	30	0.242
31	31	0.974
32	32	2.48119e-8
33	33	0.574
34	34	0.87
35	35	0.442
36	36	0.0624
37	37	0.105
38	38	0.345
39	39	0.316
4	4	0.991
40	40	0.0785
41	41	0.91
42	42	0.517
43	43	0.772
44	44	0.357
45	45	0.895
46	46	0.901
47	47	0.988
48	48	0.912
49	49	0.282
5	5	0.814
50	50	0.335
51	51	0.624
52	52	0.886
53	53	0.227
54	54	0.915
55	55	0.174
56	56	0.564
57	57	0.594
58	58	0.165
59	59	0.253
6	6	0.606
60	60	0.393
61	61	0.398
62	62	0.49
63	63	0.706
64	64	0.564
65	65	0.999
66	66	0.465
67	67	0.588
68	68	0.483
69	69	0.502
7	7	0.275
70	70	0.141
71	71	0.828
72	72	0.482
73	73	0.0545
74	74	0.532
75	75	0.949
76	76	0.161
77	77	0.011
78	78	0.127
79	79	0.0239
8	8	0.777
80	80	0.997
81	81	0.267
82	82	0.992
83	83	0.183
84	84	0.275
85	85	0.471
86	86	0.164
87	87	0.0533
88	88	0.59
89	89	0.107
9	9	0.593
90	90	0.441
91	91	0.761
92	92	0.759
93	93	0.278
94	94	0.715
95	95	0.564
96	96	0.828
97	97	0.61
98	98	0.181
99	99	0.0682

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11914

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000250 human fibroblast of skin sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008180
+|DRA_sample_Accession=CAGE@SAMD00004977
-|accession_numbers=CAGE;DRX008288;DRR009160;DRZ000585;DRZ001970
+|accession_numbers=CAGE;DRX008288;DRR009160;DRZ000585;DRZ001970;DRZ011935;DRZ013320
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!2.11!126.86!HOXC5;;chr9:132427883..132427951,+!p2@PRRX2!1.81!64.02!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.80!166.23!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.72!58.46!PRRX1;;chr1:197886461..197886558,+!p1@LHX9!1.72!52.03!LHX9;;chr9:132427972..132428056,+!p1@PRRX2!1.69!62.16!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.67!60.90!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!1.48!29.13!HOXB6;;chr12:54402745..54402788,+!p1@HOXC8!1.45!27.38!HOXC8;;chr10:119303078..119303169,+!p2@EMX2!1.45!27.28!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.41!124.52!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!1.34!23.87!PRRX1;;chr19:47523058..47523114,+!p1@NPAS1!1.33!20.46!NPAS1;;chr5:72744594..72744609,-!p1@FOXD1!1.31!87.01!FOXD1;;chr12:54379029..54379057,+!p2@HOXC10!1.31!19.39!HOXC10;;chr6:19837592..19837621,+!p1@ID4!1.30!112.73!ID4;;chr19:13134772..13134822,+!p2@NFIX!1.30!27.87!NFIX;;chr15:57511609..57511651,+!p2@TCF12!1.26!28.55!TCF12;;chr6:10415276..10415341,-!p2@TFAP2A!1.26!20.85!TFAP2A;;chr6:134210243..134210257,+!p1@TCF21!1.26!17.34!TCF21;;chr1:209979467..209979494,-!p1@IRF6!1.25!18.81!IRF6;;chr12:54393880..54393962,+!p1@HOXC9!1.25!16.76!HOXC9;;chr1:170633058..170633084,+!p5@PRRX1!1.21!15.40!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.20!25.53!TWIST2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.62!HOXC5;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.74!IRX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.16!22.80!CREB3L1;;chr5:72744445..72744466,-!p2@FOXD1!1.16!22.22!FOXD1;;chr1:170632959..170632987,+!p4@PRRX1!1.14!13.93!PRRX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.13!20.66!TFAP2A;;chr12:54378923..54378966,+!p1@HOXC10!1.13!12.57!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!1.12!12.28!HOXC10;;chr2:119605214..119605230,-!p1@EN1!1.09!11.40!EN1;;chr17:46667594..46667619,-!p1@HOXB3!1.08!11.01!HOXB3;;chr2:176994408..176994492,+!p1@HOXD8!1.04!10.04!HOXD8;;chr2:239756671..239756732,+!p1@TWIST2!1.03!31.47!TWIST2;;chr4:111558135..111558198,-!p2@PITX2!1.02!9.55!PITX2;;chr4:174450089..174450153,-!p2@HAND2!1.02!9.45!HAND2;;chr1:170632477..170632506,+!p6@PRRX1!1.01!9.26!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!1.01!9.16!KDM5D;;chr1:170632723..170632739,+!p8@PRRX1!1.00!9.06!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.99!47.84!RARG;;chr8:49833948..49833973,-!p2@SNAI2!0.98!55.83!SNAI2;;chr4:4861385..4861398,+!p1@MSX1!0.97!25.43!MSX1;;chr16:54964740..54964789,+!p1@IRX5!0.96!11.98!IRX5;;chr18:53068911..53068935,-!p4@TCF4!0.95!9.06!TCF4;;chr3:128206762..128206781,-!p2@GATA2!0.94!50.08!GATA2;;chr2:85981107..85981120,+!p3@ATOH8!0.94!7.79!ATOH8;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.50!HOXA3;;chr19:50432453..50432468,+!p1@ATF5!0.92!430.57!ATF5;;chr1:170632250..170632277,+!p7@PRRX1!0.92!7.31!PRRX1;;chr10:114889045..114889074,+!p12@TCF7L2!0.92!7.31!TCF7L2;;chr12:54402729..54402743,+!p3@HOXC8!0.91!7.11!HOXC8;;chr5:72744562..72744573,-!p3@FOXD1!0.90!8.87!FOXD1;;chr1:23885981..23886002,-!p1@ID3!0.89!1251.09!ID3;;chr2:85980951..85981004,+!p1@ATOH8!0.88!11.01!ATOH8;;chr1:170632137..170632172,+!p10@PRRX1!0.87!6.43!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!0.86!6.24!PAX3;;chr12:54380036..54380091,+!p4@HOXC10!0.86!6.24!HOXC10;;chr10:114710244..114710257,+!p3@TCF7L2!0.85!17.15!TCF7L2;;chr1:200379104..200379128,-!p2@ZNF281!0.85!15.40!ZNF281;;chr21:36260773..36260804,-!p7@RUNX1!0.85!8.38!RUNX1;;chr10:119302645..119302712,+!p3@EMX2!0.85!6.04!EMX2;;chr7:27205136..27205164,-!p1@HOXA9!0.85!6.04!HOXA9;;chr16:54320617..54320643,-!p3@IRX3!0.84!7.79!IRX3;;chr7:27224842..27224872,-!p1@HOXA11!0.84!5.94!HOXA11;;chr1:170632439..170632465,+!p11@PRRX1!0.83!5.75!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.75!ZFY;;chr8:49833978..49833996,-!p1@SNAI2!0.82!123.06!SNAI2;;chr12:54402790..54402805,+!p2@HOXC8!0.82!5.65!HOXC8;;chr2:172949484..172949522,+!p1@DLX1!0.82!5.55!DLX1;;chr4:174451370..174451387,-!p1@HAND2!0.82!5.55!HAND2;;chr7:27205106..27205134,-!p2@HOXA9!0.81!5.46!HOXA9;;chr19:13135386..13135435,+!p4@NFIX!0.80!5.36!NFIX;;chr15:37392534..37392562,-!p10@MEIS2!0.79!5.75!MEIS2;;chr15:37390482..37390572,-!p7@MEIS2!0.78!7.21!MEIS2;;chr10:119302508..119302559,+!p5@EMX2!0.78!4.97!EMX2;;chr2:8822176..8822196,+!p1@ID2!0.77!763.71!ID2;;chr10:63809106..63809127,+!p1@ARID5B!0.77!73.08!ARID5B;;chr19:13135582..13135600,+!p3@NFIX!0.77!4.87!NFIX;;chr2:119604456..119604501,-!p2@EN1!0.77!4.87!EN1;;chr12:80085061..80085119,-!p6@PAWR!0.76!7.89!PAWR;;chr8:67525443..67525459,-!p2@MYBL1!0.76!7.31!MYBL1;;chr13:37494275..37494304,-!p2@SMAD9!0.76!4.77!SMAD9;;chr2:85981073..85981091,+!p5@ATOH8!0.75!4.68!ATOH8;;chr15:37392616..37392638,-!p2@MEIS2!0.74!15.30!MEIS2;;chr20:51588873..51588953,+!p1@TSHZ2!0.74!6.14!TSHZ2;;chr2:172967242..172967265,-!p2@DLX2!0.74!4.48!DLX2;;chr5:2751785..2751808,-!p2@IRX2!0.74!4.48!IRX2;;chr15:37390850..37390909,-!p3@MEIS2!0.73!9.16!MEIS2;;chr17:46667628..46667642,-!p2@HOXB3!0.73!4.38!HOXB3;;chr1:170632683..170632696,+!p12@PRRX1!0.73!4.38!PRRX1;;chr20:48599506..48599526,+!p1@SNAI1!0.72!30.50!SNAI1;;chr5:72743793..72743855,-!p4@FOXD1!0.72!5.07!FOXD1;;chr17:46675420..46675465,-!p3@HOXB6!0.72!4.97!HOXB6;;chr20:30193083..30193098,+!p1@ID1!0.71!379.52!ID1;;chr7:44143925..44143970,+!p1@AEBP1!0.71!104.45!AEBP1;;chr6:85473156..85473210,-!p2@TBX18!0.71!5.16!TBX18;;chr1:170632115..170632136,+!p9@PRRX1!0.71!4.09!PRRX1;;chr3:52001448..52001478,-!p2@PCBP4!0.70!64.02!PCBP4;;chr15:37390374..37390422,-!p9@MEIS2!0.70!5.07!MEIS2;;chr17:46690839..46690884,-!p1@HOXB8!0.70!3.99!HOXB8;;chr2:102091566..102091581,-!p1@RFX8!0.70!3.99!RFX8;;chr10:77161504..77161530,-!p1@ZNF503!0.69!59.05!ZNF503;;chr5:321810..321877,+!p1@AHRR!0.69!13.93!AHRR;;chr1:158979872..158979898,+!p3@IFI16!0.69!13.25!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.69!7.70!AEBP1;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.21!DRAP1;;chr16:54320646..54320672,-!p2@IRX3!0.69!6.33!IRX3;;chr15:83953397..83953425,-!p1@BNC1!0.69!4.58!BNC1;;chr14:75894714..75894733,+!p1@JDP2!0.68!124.52!JDP2;;chr6:144329384..144329405,-!p1@PLAGL1!0.68!50.96!PLAGL1;;chr15:37392724..37392757,-!p1@MEIS2!0.68!19.49!MEIS2;;chr17:46687959..46688007,-!p2@HOXB7!0.68!5.46!HOXB7;;chr6:1389789..1389821,+!p1@FOXF2!0.68!5.46!FOXF2;;chr16:31076332..31076388,-!p3@ZNF668!0.68!3.80!ZNF668;;chr1:119530493..119530572,-!p1@TBX15!0.68!3.80!TBX15;;chr10:63809013..63809041,+!p3@ARID5B!0.67!23.48!ARID5B;;chr11:12696071..12696086,+!p3@TEAD1!0.67!5.07!TEAD1;;chr1:2985760..2985774,+!p1@PRDM16!0.67!3.70!PRDM16;;chr12:124873357..124873401,-!p1@NCOR2!0.66!47.65!NCOR2;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.61!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.66!17.25!DRAP1;;chr8:106330656..106330684,+!p1@ZFPM2!0.66!10.43!ZFPM2;;chr7:27224795..27224840,-!p2@HOXA11!0.66!3.61!HOXA11;;chr16:54320675..54320715,-!p1@IRX3!0.65!8.18!IRX3;;chr19:31840130..31840160,-!p2@TSHZ3!0.65!5.75!TSHZ3;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.26!HOXB7;;chr19:13136130..13136165,+!p6@NFIX!0.65!4.87!NFIX;;chr2:172967276..172967296,-!p3@DLX2!0.65!3.51!DLX2;;chr10:119302232..119302265,+!p1@EMX2!0.65!3.51!EMX2;;chr12:54394309..54394336,+!p2@HOXC9!0.65!3.51!HOXC9;;chr2:85981222..85981259,+!p2@ATOH8!0.64!5.94!ATOH8;;chr11:46299186..46299195,+!p3@CREB3L1!0.64!3.90!CREB3L1;;chr13:37494248..37494260,-!p3@SMAD9!0.64!3.41!SMAD9;;chr1:170633194..170633205,+!p18@PRRX1!0.64!3.41!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.64!3.41!DLX1;;chr2:85980768..85980783,+!p10@ATOH8!0.64!3.41!ATOH8;;chr3:128212033..128212051,-!p1@GATA2!0.64!3.41!GATA2;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.41!TFAP2A;;chr7:27213893..27213954,-!p1@HOXA10!0.64!3.41!HOXA10;;chr14:24837368..24837401,+!p1@NFATC4!0.63!8.67!NFATC4;;chr15:37391588..37391604,-!p11@MEIS2!0.63!4.38!MEIS2;;chr12:54410948..54410992,+!p3@HOXC5!0.63!3.31!HOXC5;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.31!RFX8;;chr2:177001290..177001315,+!p1@HOXD3!0.63!3.31!HOXD3;;chr7:44143997..44144008,+!p3@AEBP1!0.62!4.19!AEBP1;;chr14:62162258..62162269,+!p2@HIF1A!0.61!35.08!HIF1A;;chr16:54320101..54320125,-!p4@IRX3!0.61!4.68!IRX3;;chr2:119605056..119605071,-!p10@EN1!0.61!3.12!EN1;;chr5:88081308..88081333,-!p8@MEF2C!0.61!3.12!MEF2C;;chr1:170632907..170632916,+!p22@PRRX1!0.61!3.12!PRRX1;;chr15:37392576..37392589,-!p12@MEIS2!0.60!3.80!MEIS2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.02!FOXL1;;chr1:197886665..197886732,+!p3@LHX9!0.60!3.02!LHX9;;chr2:172967621..172967637,-!p1@DLX2!0.59!8.96!DLX2;;chr11:65687222..65687240,+!p7@DRAP1!0.59!3.90!DRAP1;;chr10:114889016..114889037,+!p15@TCF7L2!0.59!2.92!TCF7L2;;chr12:54380112..54380126,+!p5@HOXC10!0.59!2.92!HOXC10;;chr8:93074803..93074845,-!p1@RUNX1T1!0.59!2.92!RUNX1T1;;chr19:13106214..13106382,+!p1@NFIX!0.58!79.41!NFIX;;chrX:106960180..106960197,-!p2@TSC22D3!0.58!12.57!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!0.58!8.18!TWIST1;;chr13:37494365..37494381,-!p1@SMAD9!0.58!5.46!SMAD9;;chr19:50435736..50435781,+!p3@ATF5!0.58!4.09!ATF5;;chr17:46691732..46691766,-!p4@HOXB8!0.58!2.83!HOXB8;;chr12:114843940..114843955,-!p2@TBX5!0.58!2.83!TBX5;;chr12:54394416..54394467,+!p5@HOXC9!0.58!2.83!HOXC9;;chr18:53257001..53257015,-!p5@TCF4!0.57!5.16!TCF4;;chr2:85980919..85980942,+!p4@ATOH8!0.57!2.92!ATOH8;;chr2:172967323..172967336,-!p4@DLX2!0.57!2.73!DLX2;;chr12:54384370..54384382,+!p5@HOXC6!0.57!2.73!HOXC6;;chr12:54378984..54378996,+!p7@HOXC10!0.56!2.63!HOXC10;;chr1:170632867..170632878,+!p21@PRRX1!0.56!2.63!PRRX1;;chr2:172967353..172967365,-!p5@DLX2!0.56!2.63!DLX2;;chr2:85981027..85981047,+!p8@ATOH8!0.56!2.63!ATOH8;;chr17:70117153..70117174,+!p1@SOX9!0.55!32.64!SOX9;;chr7:42276787..42276815,-!p1@GLI3!0.55!7.99!GLI3;;chr5:139492456..139492489,+!p7@PURA!0.55!2.53!PURA;;chr2:85981008..85981025,+!p7@ATOH8!0.55!2.53!ATOH8;;chr11:46299443..46299459,+!p4@CREB3L1!0.55!2.53!CREB3L1;;chr1:2985726..2985752,+!p2@PRDM16!0.55!2.53!PRDM16;;chr11:46333934..46333963,+!p5@CREB3L1!0.54!2.44!CREB3L1;;chr15:57511589..57511608,+!p4@TCF12!0.54!2.44!TCF12;;chr3:114343768..114343822,-!p1@ZBTB20!0.53!13.06!ZBTB20;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.94!FOXP1;;chr2:666622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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520normal%252c%2520donor2.CNhs11914.11561-120D4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11561-120D4
 |is_a=EFO:0002091;;FF:0000250
 |is_obsolete=
 |library_id=CNhs11914
-|library_id_phase_based=1:CNhs11914
+|library_id_phase_based=2:CNhs11914
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11561
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11561
 |name=Fibroblast - skin normal, donor2
 |namespace=
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11914,LSID842,release014,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11561-120D4;search_select_hide=table117:FF:11561-120D4
 }}

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Latest revision as of 18:09, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0