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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000087,UBERON:0000091,UBERON:0000358,UBERON:0000465,UBERON:0000468,UBERON:0000478,UBERON:0000479,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002331,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003104,UBERON:0003422,UBERON:0004120,UBERON:0005423,UBERON:0005728,UBERON:0007806,UBERON:0008780,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00005491
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002569
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005491
|accession_numbers=CAGE;DRX008357;DRR009229;DRZ000654;DRZ002039;DRZ012004;DRZ013389
|accession_numbers_RNASeq=sRNA-Seq;DRX037060;DRR041426;DRZ007068
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000094,FF:0000001
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.92!838.89!HAND2;;chr19:46801639..46801699,+!p1@HIF3A!2.38!237.13!HIF3A;;chr7:27224795..27224840,-!p2@HOXA11!2.14!136.74!HOXA11;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.07!115.58!SEBOX;;chr7:27224842..27224872,-!p1@HOXA11!2.03!106.90!HOXA11;;chr11:46299199..46299233,+!p1@CREB3L1!2.00!487.82!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.92!82.48!HOXC5;;chr4:111544219..111544240,-!p1@PITX2!1.91!80.85!PITX2;;chr4:174451350..174451363,-!p3@HAND2!1.86!72.17!HAND2;;chr7:19157248..19157268,-!p1@TWIST1!1.81!168.76!TWIST1;;chr4:174450089..174450153,-!p2@HAND2!1.77!57.52!HAND2;;chr5:92918919..92918942,+!p1@NR2F1!1.72!221.39!NR2F1;;chr11:46299539..46299620,+!p2@CREB3L1!1.71!82.48!CREB3L1;;chr11:61520075..61520136,+!p1@C11orf9!1.64!87.36!C11orf9;;chr12:54402745..54402788,+!p1@HOXC8!1.63!41.78!HOXC8;;chr5:134369905..134369972,-!p1@PITX1!1.59!57.52!PITX1;;chr6:134210243..134210257,+!p1@TCF21!1.58!36.90!TCF21;;chrX:106960285..106960299,-!p1@TSC22D3!1.56!904.55!TSC22D3;;chr9:77112244..77112262,+!p1@RORB!1.51!34.73!RORB;;chr18:19749541..19749557,+!p1@GATA6!1.50!93.87!GATA6;;chr17:46682321..46682362,-!p1@HOXB6!1.50!30.39!HOXB6;;chr11:113930425..113930471,+!p1@ZBTB16!1.49!42.87!ZBTB16;;chr4:111558135..111558198,-!p2@PITX2!1.49!29.84!PITX2;;chr12:54378923..54378966,+!p1@HOXC10!1.47!28.76!HOXC10;;chr2:176969228..176969260,+!p1@HOXD11!1.47!28.22!HOXD11;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.41!24.96!SEBOX;;chr18:19749386..19749404,+!p2@GATA6!1.39!33.10!GATA6;;chr5:92919100..92919135,+!p3@NR2F1!1.38!27.67!NR2F1;;chr5:134369879..134369898,-!p2@PITX1!1.37!22.25!PITX1;;chr8:48650715..48650735,-!p1@CEBPD!1.36!2664.27!CEBPD;;chr7:27213893..27213954,-!p1@HOXA10!1.35!21.16!HOXA10;;chr6:144329384..144329405,-!p1@PLAGL1!1.32!224.65!PLAGL1;;chr8:49833948..49833973,-!p2@SNAI2!1.32!123.18!SNAI2;;chr11:47279248..47279264,+!p3@NR1H3!1.32!22.79!NR1H3;;chr7:35293685..35293718,-!p1@TBX20!1.32!20.08!TBX20;;chr16:49698228..49698243,-!p2@ZNF423!1.31!19.53!ZNF423;;chr7:27192185..27192209,-!p1@HOXA3!1.29!18.45!HOXA3;;chr5:92918956..92918969,+!p4@NR2F1!1.28!19.53!NR2F1;;chr2:19558373..19558392,-!p1@OSR1!1.27!47.75!OSR1;;chr5:92919375..92919438,+!p6@NR2F1!1.27!18.99!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.25!51.55!TBX2;;chr3:126076242..126076257,-!p1@KLF15!1.25!20.62!KLF15;;chr7:27239703..27239715,-!p1@HOXA13!1.25!16.82!HOXA13;;chrX:107019163..107019179,-!p7@TSC22D3!1.24!18.99!TSC22D3;;chr12:115122318..115122331,-!p2@TBX3!1.24!16.28!TBX3;;chr5:92918860..92918871,+!p10@NR2F1!1.22!17.36!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!1.22!15.74!NR2F1;;chr11:46299443..46299459,+!p4@CREB3L1!1.22!15.74!CREB3L1;;chr16:86544113..86544145,+!p1@FOXF1!1.21!18.99!FOXF1;;chr5:92919068..92919082,+!p5@NR2F1!1.19!17.36!NR2F1;;chr11:63684602..63684664,-!p1@RCOR2!1.17!27.13!RCOR2;;chr5:92918894..92918912,+!p2@NR2F1!1.16!43.95!NR2F1;;chr12:54402790..54402805,+!p2@HOXC8!1.16!13.57!HOXC8;;chr7:101460882..101460923,+!p5@CUX1!1.15!13.02!CUX1;;chr3:126076264..126076305,-!p2@KLF15!1.13!17.36!KLF15;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!1.13!15.74!PRDM11;;chr5:92918789..92918800,+!p12@NR2F1!1.13!12.48!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!1.12!251.78!SNAI2;;chr17:38498594..38498661,+!p2@RARA!1.12!41.24!RARA;;chr12:115121962..115121987,-!p1@TBX3!1.11!98.76!TBX3;;chr12:54384370..54384382,+!p5@HOXC6!1.11!11.94!HOXC6;;chr19:46800289..46800327,+!p2@HIF3A!1.11!11.94!HIF3A;;chr13:41240737..41240787,-!p1@FOXO1!1.10!137.28!FOXO1;;chr17:61919812..61919833,-!p6@SMARCD2!1.10!14.65!SMARCD2;;chr13:41240717..41240735,-!p2@FOXO1!1.09!77.59!FOXO1;;chr7:149470641..149470694,-!p1@ZNF467!1.09!51.01!ZNF467;;chr12:54393880..54393962,+!p1@HOXC9!1.09!11.40!HOXC9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.09!11.40!HOXC5;;chrX:107018969..107019024,-!p6@TSC22D3!1.06!14.65!TSC22D3;;chr12:56414795..56414836,+!p4@IKZF4!1.05!10.31!IKZF4;;chr11:113930401..113930422,+!p3@ZBTB16!1.03!9.77!ZBTB16;;chr12:54402729..54402743,+!p3@HOXC8!1.03!9.77!HOXC8;;chr1:170632285..170632309,+!p1@PRRX1!1.02!10.85!PRRX1;;chr14:75894714..75894733,+!p1@JDP2!1.01!263.71!JDP2;;chr11:113930291..113930339,+!p2@ZBTB16!1.01!15.19!ZBTB16;;chr20:62680984..62680999,-!p1@SOX18!1.01!12.48!SOX18;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.01!9.22!SEBOX;;chr12:54379029..54379057,+!p2@HOXC10!1.01!9.22!HOXC10;;chr2:66662281..66662308,+!p1@MEIS1!1.00!31.47!MEIS1;;chr7:19157043..19157088,-!p2@TWIST1!1.00!23.33!TWIST1;;chr5:153857778..153857794,-!p1@HAND1!0.99!8.68!HAND1;;chr12:115121770..115121781,-!p4@TBX3!0.99!8.68!TBX3;;chr2:176969179..176969226,+!p2@HOXD11!0.99!8.68!HOXD11;;chr20:2673383..2673441,+!p1@EBF4!0.96!13.02!EBF4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.96!8.68!GLIS1;;chr1:226411361..226411366,+!p1@MIXL1!0.96!8.14!MIXL1;;chrX:107018836..107018862,-!p8@TSC22D3!0.96!8.14!TSC22D3;;chr17:59477275..59477286,+!p3@TBX2!0.94!10.31!TBX2;;chr2:66662249..66662267,+!p2@MEIS1!0.93!29.84!MEIS1;;chr12:1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002569;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002331
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor1.CNhs11347.11539-120A9.hg38.nobarcode.ctss.bed.gz
|id=FF:11539-120A9
|id=FF:11539-120A9
|is_a=EFO:0002091;;FF:0000002;;FF:0000094;;FF:0000210
|is_a=EFO:0002091;;FF:0000094
|is_obsolete=
|library_id=CNhs11347
|library_id_phase_based=2:CNhs11347
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11539
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.CAGATC.11539
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11539
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.CAGATC.11539
|name=Mesenchymal Stem Cells - umbilical, donor1
|name=Mesenchymal Stem Cells - umbilical, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11347,LSID769,release014,COMPLETED
|profile_hcage=CNhs11347,LSID769,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10005,,,
|profile_srnaseq=SRhi10005,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_box=120
|rna_catalog_number=SC7535
|rna_catalog_number=SC7535
Line 55: Line 82:
|rna_tube_id=120A9
|rna_tube_id=120A9
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10005.CAGATC
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 97:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.97658273835324e-231!GO:0005737;cytoplasm;2.89145540510867e-164!GO:0043231;intracellular membrane-bound organelle;4.93225413389711e-146!GO:0043227;membrane-bound organelle;8.45970812142454e-146!GO:0043226;organelle;2.25189764243709e-141!GO:0043229;intracellular organelle;4.66277528751233e-141!GO:0044444;cytoplasmic part;3.73300860138105e-130!GO:0044422;organelle part;6.8739532439743e-102!GO:0044446;intracellular organelle part;1.59020042744689e-100!GO:0044237;cellular metabolic process;3.59473365483944e-78!GO:0044238;primary metabolic process;8.87806760199927e-76!GO:0030529;ribonucleoprotein complex;1.47973303164511e-71!GO:0005739;mitochondrion;1.08586395422304e-64!GO:0043170;macromolecule metabolic process;1.08586395422304e-64!GO:0032991;macromolecular complex;2.97100886795043e-64!GO:0043233;organelle lumen;1.44712794357402e-58!GO:0031974;membrane-enclosed lumen;1.44712794357402e-58!GO:0005515;protein binding;2.64793490870114e-57!GO:0003723;RNA binding;2.59605281488516e-49!GO:0031090;organelle membrane;3.21780467265824e-48!GO:0005840;ribosome;9.25336703176619e-48!GO:0044428;nuclear part;2.63595887535367e-46!GO:0009058;biosynthetic process;8.16000944354336e-44!GO:0019538;protein metabolic process;1.07354652606819e-43!GO:0006412;translation;2.31283145568667e-43!GO:0044429;mitochondrial part;1.04379171458333e-42!GO:0003735;structural constituent of ribosome;2.36378319800359e-42!GO:0005634;nucleus;3.99389634993381e-42!GO:0044249;cellular biosynthetic process;6.74398143545169e-41!GO:0044260;cellular macromolecule metabolic process;9.91464062745075e-40!GO:0044267;cellular protein metabolic process;9.00062779979815e-39!GO:0009059;macromolecule biosynthetic process;3.68179820142809e-37!GO:0033279;ribosomal subunit;1.11649068465158e-36!GO:0015031;protein transport;6.5753036256094e-34!GO:0031967;organelle envelope;1.30037823599603e-33!GO:0005829;cytosol;1.64040675849052e-33!GO:0031975;envelope;2.75496991992321e-33!GO:0006396;RNA processing;3.00697081484316e-33!GO:0033036;macromolecule localization;4.01082864872923e-33!GO:0010467;gene expression;5.26217852137267e-33!GO:0045184;establishment of protein localization;2.49147917077447e-31!GO:0031981;nuclear lumen;4.4521259082379e-31!GO:0008104;protein localization;5.96269500261738e-31!GO:0016043;cellular component organization and biogenesis;8.72184491045827e-30!GO:0005740;mitochondrial envelope;1.49619157009182e-29!GO:0043283;biopolymer metabolic process;2.22196560488111e-29!GO:0043234;protein complex;1.63250441440977e-28!GO:0016071;mRNA metabolic process;2.72906555574108e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.2935515500534e-28!GO:0031966;mitochondrial membrane;1.01153995251392e-27!GO:0019866;organelle inner membrane;3.08122273034929e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.44716102226396e-25!GO:0005743;mitochondrial inner membrane;2.27716338675526e-25!GO:0008380;RNA splicing;4.93262293621137e-25!GO:0006397;mRNA processing;5.40434807563778e-24!GO:0046907;intracellular transport;1.25394856759946e-22!GO:0065003;macromolecular complex assembly;3.38988053143836e-22!GO:0005783;endoplasmic reticulum;9.2638176352336e-22!GO:0006886;intracellular protein transport;1.0896543985942e-21!GO:0044445;cytosolic part;3.3395359474634e-21!GO:0006119;oxidative phosphorylation;4.88708228039952e-21!GO:0044455;mitochondrial membrane part;4.93715327508875e-20!GO:0006457;protein folding;8.35398504979605e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.05991366135219e-19!GO:0022607;cellular component assembly;1.42895090937902e-19!GO:0005654;nucleoplasm;2.48365164798664e-19!GO:0015934;large ribosomal subunit;4.51750367728774e-19!GO:0015935;small ribosomal subunit;1.31031073535597e-18!GO:0005681;spliceosome;2.89256952181349e-18!GO:0044432;endoplasmic reticulum part;1.17353556263882e-17!GO:0031980;mitochondrial lumen;2.23625227050794e-17!GO:0005759;mitochondrial matrix;2.23625227050794e-17!GO:0005746;mitochondrial respiratory chain;2.86722710640123e-17!GO:0012505;endomembrane system;5.30966281282876e-17!GO:0044451;nucleoplasm part;9.66849224709496e-17!GO:0048770;pigment granule;1.43724659987049e-16!GO:0042470;melanosome;1.43724659987049e-16!GO:0051186;cofactor metabolic process;7.56846223107123e-16!GO:0005794;Golgi apparatus;2.08131716727865e-15!GO:0006996;organelle organization and biogenesis;2.50079313143933e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.83311024937923e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.33386491799896e-14!GO:0003954;NADH dehydrogenase activity;1.33386491799896e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.33386491799896e-14!GO:0008134;transcription factor binding;1.49711580123486e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.5761958616155e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.52095438371665e-14!GO:0016874;ligase activity;1.39705420591883e-13!GO:0043228;non-membrane-bound organelle;2.36644405649016e-13!GO:0043232;intracellular non-membrane-bound organelle;2.36644405649016e-13!GO:0051082;unfolded protein binding;2.4245897181548e-13!GO:0003676;nucleic acid binding;2.49460995627492e-13!GO:0022618;protein-RNA complex assembly;4.10730842683573e-13!GO:0016070;RNA metabolic process;4.17792934039442e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.71932278361443e-13!GO:0042773;ATP synthesis coupled electron transport;5.71932278361443e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.83540691543106e-13!GO:0005730;nucleolus;8.84705939613648e-13!GO:0006732;coenzyme metabolic process;9.93886172634154e-13!GO:0030964;NADH dehydrogenase complex (quinone);9.99000341089706e-13!GO:0045271;respiratory chain complex I;9.99000341089706e-13!GO:0005747;mitochondrial respiratory chain complex I;9.99000341089706e-13!GO:0051641;cellular localization;1.76556796276611e-12!GO:0051649;establishment of cellular localization;1.9771590450767e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.91591960979736e-12!GO:0016462;pyrophosphatase activity;2.91641948406515e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.94153012055103e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.06675035427163e-12!GO:0005793;ER-Golgi intermediate compartment;3.82442541003511e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.13094440961532e-12!GO:0017111;nucleoside-triphosphatase activity;6.76031941905948e-12!GO:0006259;DNA metabolic process;8.03795394710201e-12!GO:0005761;mitochondrial ribosome;8.56143521370597e-12!GO:0000313;organellar ribosome;8.56143521370597e-12!GO:0044248;cellular catabolic process;8.62221665695025e-12!GO:0048193;Golgi vesicle transport;8.80340516975678e-12!GO:0005789;endoplasmic reticulum membrane;1.09404694423346e-11!GO:0006512;ubiquitin cycle;1.18535212509241e-11!GO:0000502;proteasome complex (sensu Eukaryota);1.18731731337598e-11!GO:0008135;translation factor activity, nucleic acid binding;2.05648115925998e-11!GO:0044265;cellular macromolecule catabolic process;2.91622498451875e-11!GO:0006605;protein targeting;4.61113246733444e-11!GO:0000166;nucleotide binding;5.15283393122321e-11!GO:0043285;biopolymer catabolic process;6.15808318751202e-11!GO:0009055;electron carrier activity;6.64185515270347e-11!GO:0016192;vesicle-mediated transport;1.70759694977864e-10!GO:0009057;macromolecule catabolic process;2.70404361585327e-10!GO:0016491;oxidoreductase activity;5.8939361624036e-10!GO:0003712;transcription cofactor activity;1.12538191177137e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.19250437015851e-09!GO:0000375;RNA splicing, via transesterification reactions;1.19250437015851e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.19250437015851e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;1.33262725117443e-09!GO:0044257;cellular protein catabolic process;2.03260734641236e-09!GO:0019941;modification-dependent protein catabolic process;2.16360939495272e-09!GO:0043632;modification-dependent macromolecule catabolic process;2.16360939495272e-09!GO:0006511;ubiquitin-dependent protein catabolic process;2.88793663771384e-09!GO:0043412;biopolymer modification;3.31327897434453e-09!GO:0030163;protein catabolic process;4.93587307448946e-09!GO:0003743;translation initiation factor activity;6.05474299389456e-09!GO:0005788;endoplasmic reticulum lumen;7.48042167828989e-09!GO:0006163;purine nucleotide metabolic process;8.99651982589437e-09!GO:0009259;ribonucleotide metabolic process;9.90558211789747e-09!GO:0009150;purine ribonucleotide metabolic process;1.06519480384074e-08!GO:0012501;programmed cell death;1.27379412690024e-08!GO:0006446;regulation of translational initiation;1.6372539153577e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.84658090583617e-08!GO:0051188;cofactor biosynthetic process;1.94873019533141e-08!GO:0016604;nuclear body;2.25398905119023e-08!GO:0006915;apoptosis;2.84375520927858e-08!GO:0006464;protein modification process;3.64747923502177e-08!GO:0006413;translational initiation;5.44259444815591e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.44259444815591e-08!GO:0048523;negative regulation of cellular process;5.56432968119943e-08!GO:0006164;purine nucleotide biosynthetic process;5.63204669200923e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.39074519571676e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.55841649157453e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.39742825171363e-08!GO:0009144;purine nucleoside triphosphate metabolic process;8.39742825171363e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.53320244249978e-08!GO:0006399;tRNA metabolic process;9.66603450516607e-08!GO:0006091;generation of precursor metabolites and energy;1.0892436369278e-07!GO:0009141;nucleoside triphosphate metabolic process;1.13900907881332e-07!GO:0008219;cell death;1.1951264086102e-07!GO:0016265;death;1.1951264086102e-07!GO:0009260;ribonucleotide biosynthetic process;1.39086187654846e-07!GO:0015986;ATP synthesis coupled proton transport;1.72257095650392e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.72257095650392e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.76794724619174e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.76794724619174e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.83537935592822e-07!GO:0008565;protein transporter activity;1.8356319473103e-07!GO:0005773;vacuole;1.8602053513174e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.88294761265788e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.30123808792641e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.30123808792641e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.34151575449884e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.34151575449884e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.34151575449884e-07!GO:0042254;ribosome biogenesis and assembly;2.69779349271076e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.72413364723912e-07!GO:0009060;aerobic respiration;3.30815610280793e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.32982947462324e-07!GO:0032553;ribonucleotide binding;4.03184169317376e-07!GO:0032555;purine ribonucleotide binding;4.03184169317376e-07!GO:0005768;endosome;4.05435914785075e-07!GO:0006913;nucleocytoplasmic transport;4.08974716086296e-07!GO:0016607;nuclear speck;5.00657865778302e-07!GO:0043038;amino acid activation;5.80120747489815e-07!GO:0006418;tRNA aminoacylation for protein translation;5.80120747489815e-07!GO:0043039;tRNA aminoacylation;5.80120747489815e-07!GO:0017076;purine nucleotide binding;5.81313205169023e-07!GO:0016564;transcription repressor activity;6.37284029037442e-07!GO:0051169;nuclear transport;6.50711930409097e-07!GO:0046034;ATP metabolic process;6.50711930409097e-07!GO:0030120;vesicle coat;7.07271891509683e-07!GO:0030662;coated vesicle membrane;7.07271891509683e-07!GO:0006366;transcription from RNA polymerase II promoter;7.40932075014203e-07!GO:0009056;catabolic process;7.40932075014203e-07!GO:0019829;cation-transporting ATPase activity;7.49501763075041e-07!GO:0006461;protein complex assembly;7.88050285375344e-07!GO:0017038;protein import;8.74806718424229e-07!GO:0016853;isomerase activity;9.93125331329737e-07!GO:0048475;coated membrane;1.13829851239728e-06!GO:0030117;membrane coat;1.13829851239728e-06!GO:0006323;DNA packaging;1.13829851239728e-06!GO:0008639;small protein conjugating enzyme activity;1.20147573425711e-06!GO:0048519;negative regulation of biological process;1.37900149339219e-06!GO:0045333;cellular respiration;1.50285063856134e-06!GO:0008654;phospholipid biosynthetic process;1.54221953118554e-06!GO:0006754;ATP biosynthetic process;1.56913294595866e-06!GO:0006753;nucleoside phosphate metabolic process;1.56913294595866e-06!GO:0009108;coenzyme biosynthetic process;1.70877566696194e-06!GO:0004842;ubiquitin-protein ligase activity;2.40915840552187e-06!GO:0043687;post-translational protein modification;2.41371749762054e-06!GO:0000323;lytic vacuole;2.60301583672781e-06!GO:0005764;lysosome;2.60301583672781e-06!GO:0009117;nucleotide metabolic process;2.61895531664658e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.68489563650981e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.94148443010041e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.54477561539548e-06!GO:0044431;Golgi apparatus part;3.70662837621774e-06!GO:0019787;small conjugating protein ligase activity;3.92923374984203e-06!GO:0031324;negative regulation of cellular metabolic process;4.09485254233208e-06!GO:0050794;regulation of cellular process;4.66582505787765e-06!GO:0005635;nuclear envelope;4.95709766852268e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.3241198758277e-06!GO:0051246;regulation of protein metabolic process;5.49778802909774e-06!GO:0005770;late endosome;5.83438527718607e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.40219018935886e-06!GO:0003714;transcription corepressor activity;7.08256175676914e-06!GO:0031965;nuclear membrane;7.52099041659863e-06!GO:0042623;ATPase activity, coupled;8.10012950549127e-06!GO:0003924;GTPase activity;8.23976792617329e-06!GO:0045259;proton-transporting ATP synthase complex;1.07419998990271e-05!GO:0016887;ATPase activity;1.21083002335913e-05!GO:0006099;tricarboxylic acid cycle;1.21717298066132e-05!GO:0046356;acetyl-CoA catabolic process;1.21717298066132e-05!GO:0051187;cofactor catabolic process;1.2699148441738e-05!GO:0016740;transferase activity;1.29181185015578e-05!GO:0016881;acid-amino acid ligase activity;1.54401010507157e-05!GO:0065002;intracellular protein transport across a membrane;1.57332116852419e-05!GO:0006752;group transfer coenzyme metabolic process;1.61185215206062e-05!GO:0009109;coenzyme catabolic process;1.80164682063311e-05!GO:0044440;endosomal part;1.9440908589242e-05!GO:0010008;endosome membrane;1.9440908589242e-05!GO:0044262;cellular carbohydrate metabolic process;2.15954343151126e-05!GO:0006084;acetyl-CoA metabolic process;2.24444486680467e-05!GO:0042981;regulation of apoptosis;2.27311347113968e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.28536645292884e-05!GO:0016859;cis-trans isomerase activity;2.37838972219728e-05!GO:0045454;cell redox homeostasis;2.42686993327155e-05!GO:0043067;regulation of programmed cell death;2.50353965093405e-05!GO:0031988;membrane-bound vesicle;2.50747791073607e-05!GO:0051276;chromosome organization and biogenesis;2.73571041557148e-05!GO:0031252;leading edge;2.76072768083423e-05!GO:0016568;chromatin modification;2.78567629310587e-05!GO:0016563;transcription activator activity;2.81299141772594e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.81299141772594e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.20077411750124e-05!GO:0019843;rRNA binding;3.49949277997052e-05!GO:0003713;transcription coactivator activity;3.49949277997052e-05!GO:0005839;proteasome core complex (sensu Eukaryota);3.58900908403458e-05!GO:0009892;negative regulation of metabolic process;3.78691437037661e-05!GO:0033116;ER-Golgi intermediate compartment membrane;3.89403814448425e-05!GO:0005524;ATP binding;3.89403814448425e-05!GO:0005667;transcription factor complex;4.00911542701745e-05!GO:0016072;rRNA metabolic process;4.08398167768561e-05!GO:0006364;rRNA processing;4.13838701499357e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.13838701499357e-05!GO:0045786;negative regulation of progression through cell cycle;4.30168172359629e-05!GO:0007049;cell cycle;4.37198275137054e-05!GO:0005762;mitochondrial large ribosomal subunit;4.38650515118315e-05!GO:0000315;organellar large ribosomal subunit;4.38650515118315e-05!GO:0032559;adenyl ribonucleotide binding;4.50453032489247e-05!GO:0046474;glycerophospholipid biosynthetic process;5.0650429824234e-05!GO:0044453;nuclear membrane part;5.77780191581079e-05!GO:0065004;protein-DNA complex assembly;5.89972433147233e-05!GO:0016481;negative regulation of transcription;6.18646097299483e-05!GO:0005798;Golgi-associated vesicle;6.63848498330422e-05!GO:0051789;response to protein stimulus;6.72441081263872e-05!GO:0006986;response to unfolded protein;6.72441081263872e-05!GO:0005581;collagen;7.37437437455268e-05!GO:0030554;adenyl nucleotide binding;7.55694139578245e-05!GO:0006916;anti-apoptosis;8.3843346637795e-05!GO:0000139;Golgi membrane;8.8045354215891e-05!GO:0030176;integral to endoplasmic reticulum membrane;8.97716363338587e-05!GO:0016787;hydrolase activity;9.37000857072332e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.44673004930858e-05!GO:0008026;ATP-dependent helicase activity;9.63206479595864e-05!GO:0008610;lipid biosynthetic process;0.000111719143411871!GO:0000245;spliceosome assembly;0.000111916515450238!GO:0015980;energy derivation by oxidation of organic compounds;0.000119367747560355!GO:0006974;response to DNA damage stimulus;0.000120096900877111!GO:0008361;regulation of cell size;0.000127020560131936!GO:0031982;vesicle;0.000131015898830101!GO:0043069;negative regulation of programmed cell death;0.0001362764168863!GO:0030867;rough endoplasmic reticulum membrane;0.000138271394970373!GO:0031410;cytoplasmic vesicle;0.000142092009566164!GO:0006333;chromatin assembly or disassembly;0.000154227904840443!GO:0030133;transport vesicle;0.000157154366379137!GO:0050789;regulation of biological process;0.000157371557952254!GO:0043066;negative regulation of apoptosis;0.000167098985598261!GO:0007005;mitochondrion organization and biogenesis;0.000175160660872569!GO:0004298;threonine endopeptidase activity;0.000187845804695379!GO:0016049;cell growth;0.000187845804695379!GO:0046467;membrane lipid biosynthetic process;0.0002037337402479!GO:0000074;regulation of progression through cell cycle;0.000221750640059076!GO:0005525;GTP binding;0.000235378076399098!GO:0051726;regulation of cell cycle;0.000256859594228248!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000264790262567222!GO:0004386;helicase activity;0.000268082575739528!GO:0046489;phosphoinositide biosynthetic process;0.000281684860617385!GO:0006082;organic acid metabolic process;0.00038855431673248!GO:0006613;cotranslational protein targeting to membrane;0.000388918557364071!GO:0043623;cellular protein complex assembly;0.000393830244388656!GO:0016779;nucleotidyltransferase activity;0.000405555151932396!GO:0001558;regulation of cell growth;0.000479715352959092!GO:0019752;carboxylic acid metabolic process;0.000506223668382641!GO:0051170;nuclear import;0.00055471182121678!GO:0006793;phosphorus metabolic process;0.000559440620022915!GO:0006796;phosphate metabolic process;0.000559440620022915!GO:0008250;oligosaccharyl transferase complex;0.000571783218584828!GO:0031968;organelle outer membrane;0.000607102223358434!GO:0032446;protein modification by small protein conjugation;0.000617690225449695!GO:0005791;rough endoplasmic reticulum;0.000617690225449695!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000650836585107546!GO:0000151;ubiquitin ligase complex;0.000680413806415345!GO:0019867;outer membrane;0.000711455762219349!GO:0006606;protein import into nucleus;0.000712558525734642!GO:0045892;negative regulation of transcription, DNA-dependent;0.000737574862949333!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000754336805158126!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00076921160221915!GO:0015399;primary active transmembrane transporter activity;0.00076921160221915!GO:0016567;protein ubiquitination;0.000780893491532282!GO:0005774;vacuolar membrane;0.000783606502609877!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000855578842517786!GO:0015002;heme-copper terminal oxidase activity;0.000855578842517786!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000855578842517786!GO:0004129;cytochrome-c oxidase activity;0.000855578842517786!GO:0009165;nucleotide biosynthetic process;0.000895897230316341!GO:0007243;protein kinase cascade;0.00090453947606044!GO:0005643;nuclear pore;0.000925305665701503!GO:0005905;coated pit;0.000986532461362123!GO:0005048;signal sequence binding;0.000991033742445196!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00100800665610479!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00106621465424914!GO:0000314;organellar small ribosomal subunit;0.001084241118845!GO:0005763;mitochondrial small ribosomal subunit;0.001084241118845!GO:0016310;phosphorylation;0.00110205258086297!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111410819506435!GO:0019222;regulation of metabolic process;0.00112439343485808!GO:0007040;lysosome organization and biogenesis;0.00112439343485808!GO:0005741;mitochondrial outer membrane;0.00121010552501928!GO:0051920;peroxiredoxin activity;0.00123198780886917!GO:0006281;DNA repair;0.0012356865539189!GO:0006979;response to oxidative stress;0.00126457340666277!GO:0003697;single-stranded DNA binding;0.00126522853123132!GO:0003899;DNA-directed RNA polymerase activity;0.00128177073305699!GO:0032561;guanyl ribonucleotide binding;0.00129667743579344!GO:0019001;guanyl nucleotide binding;0.00129667743579344!GO:0009719;response to endogenous stimulus;0.00131878678807978!GO:0051287;NAD binding;0.00148884462888162!GO:0051427;hormone receptor binding;0.00157609590469075!GO:0043021;ribonucleoprotein binding;0.00162321566029453!GO:0018196;peptidyl-asparagine modification;0.0017484208164573!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0017484208164573!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00178608245458945!GO:0022890;inorganic cation transmembrane transporter activity;0.00185048420240164!GO:0004576;oligosaccharyl transferase activity;0.00190381060818638!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00197529767976809!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00197529767976809!GO:0030663;COPI coated vesicle membrane;0.00201767797103416!GO:0030126;COPI vesicle coat;0.00201767797103416!GO:0030132;clathrin coat of coated pit;0.00203696674855387!GO:0044437;vacuolar part;0.00208354479043807!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00229812373587042!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00238339461419099!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00238339461419099!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00238339461419099!GO:0043681;protein import into mitochondrion;0.00240091984972529!GO:0005765;lysosomal membrane;0.00243430421932323!GO:0006612;protein targeting to membrane;0.00243430421932323!GO:0022402;cell cycle process;0.00246649992824675!GO:0006118;electron transport;0.00250994533377924!GO:0046930;pore complex;0.00255673647654209!GO:0050657;nucleic acid transport;0.00260049799438033!GO:0051236;establishment of RNA localization;0.00260049799438033!GO:0050658;RNA transport;0.00260049799438033!GO:0030137;COPI-coated vesicle;0.00263715349567977!GO:0030036;actin cytoskeleton organization and biogenesis;0.00264937650336559!GO:0035257;nuclear hormone receptor binding;0.0026917247158652!GO:0048522;positive regulation of cellular process;0.00269859714718655!GO:0031497;chromatin assembly;0.00274462027833551!GO:0007033;vacuole organization and biogenesis;0.00274462027833551!GO:0031902;late endosome membrane;0.00298209917839241!GO:0005769;early endosome;0.00300958827687197!GO:0043566;structure-specific DNA binding;0.00305639947883968!GO:0006403;RNA localization;0.00314864441617755!GO:0004177;aminopeptidase activity;0.00331295174133!GO:0031072;heat shock protein binding;0.00346681291956748!GO:0043284;biopolymer biosynthetic process;0.00356744050772469!GO:0003724;RNA helicase activity;0.00366572595543797!GO:0005586;collagen type III;0.00373451733125058!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00376412902062667!GO:0006506;GPI anchor biosynthetic process;0.00376532141592652!GO:0000785;chromatin;0.00387764628186823!GO:0008286;insulin receptor signaling pathway;0.00389996869609946!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00391625372974886!GO:0006807;nitrogen compound metabolic process;0.00401587313214203!GO:0006414;translational elongation;0.00403095958942949!GO:0006334;nucleosome assembly;0.00418147973449089!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00432367001907715!GO:0007050;cell cycle arrest;0.00451611886750342!GO:0006650;glycerophospholipid metabolic process;0.00456314612934338!GO:0030659;cytoplasmic vesicle membrane;0.00488117529944245!GO:0005885;Arp2/3 protein complex;0.00490561237258974!GO:0030027;lamellipodium;0.00507925559207192!GO:0006891;intra-Golgi vesicle-mediated transport;0.00529976508895922!GO:0042158;lipoprotein biosynthetic process;0.0053602930483959!GO:0048487;beta-tubulin binding;0.00549655946357543!GO:0019899;enzyme binding;0.00564904604865427!GO:0016044;membrane organization and biogenesis;0.00568627231996613!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0057700146830992!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00585005278565042!GO:0043492;ATPase activity, coupled to movement of substances;0.00587129702751319!GO:0015992;proton transport;0.00600649665551292!GO:0043488;regulation of mRNA stability;0.00612280359463836!GO:0043487;regulation of RNA stability;0.00612280359463836!GO:0004364;glutathione transferase activity;0.00614836466846981!GO:0007006;mitochondrial membrane organization and biogenesis;0.00617267459110715!GO:0051101;regulation of DNA binding;0.0065280509502628!GO:0007264;small GTPase mediated signal transduction;0.00677630384366832!GO:0006402;mRNA catabolic process;0.00681134323821686!GO:0030134;ER to Golgi transport vesicle;0.0068578883702191!GO:0006505;GPI anchor metabolic process;0.00690316780518819!GO:0006520;amino acid metabolic process;0.0069356327427697!GO:0006818;hydrogen transport;0.00693793750157044!GO:0006740;NADPH regeneration;0.00715061945061242!GO:0006098;pentose-phosphate shunt;0.00715061945061242!GO:0040029;regulation of gene expression, epigenetic;0.00741058191107914!GO:0006790;sulfur metabolic process;0.00743573791421877!GO:0006509;membrane protein ectodomain proteolysis;0.00743573791421877!GO:0033619;membrane protein proteolysis;0.00743573791421877!GO:0003729;mRNA binding;0.00764326653767323!GO:0031301;integral to organelle membrane;0.00792542493197724!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00796532431333805!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00796532431333805!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00796532431333805!GO:0003756;protein disulfide isomerase activity;0.00818007652871651!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00818007652871651!GO:0051329;interphase of mitotic cell cycle;0.00822460961717021!GO:0009308;amine metabolic process;0.00857831250041369!GO:0065007;biological regulation;0.00863341023916177!GO:0006497;protein amino acid lipidation;0.00899055727455581!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00904120469894019!GO:0030658;transport vesicle membrane;0.00905745939616959!GO:0030118;clathrin coat;0.00923466850042166!GO:0040008;regulation of growth;0.00928197041262572!GO:0000049;tRNA binding;0.00934609931684657!GO:0006672;ceramide metabolic process;0.00956070812553488!GO:0051539;4 iron, 4 sulfur cluster binding;0.00968135637092374!GO:0006626;protein targeting to mitochondrion;0.010225078665075!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0102943920035586!GO:0044255;cellular lipid metabolic process;0.0103324460055728!GO:0031272;regulation of pseudopodium formation;0.0104498997374627!GO:0031269;pseudopodium formation;0.0104498997374627!GO:0031344;regulation of cell projection organization and biogenesis;0.0104498997374627!GO:0031268;pseudopodium organization and biogenesis;0.0104498997374627!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0104498997374627!GO:0031274;positive regulation of pseudopodium formation;0.0104498997374627!GO:0017166;vinculin binding;0.0105104520008684!GO:0006778;porphyrin metabolic process;0.0112147787472588!GO:0033013;tetrapyrrole metabolic process;0.0112147787472588!GO:0050662;coenzyme binding;0.0114208019603875!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0114208019603875!GO:0045792;negative regulation of cell size;0.0116288823604902!GO:0030041;actin filament polymerization;0.011741349682442!GO:0030029;actin filament-based process;0.0118154811951492!GO:0006260;DNA replication;0.01195345987973!GO:0005583;fibrillar collagen;0.0121523809169101!GO:0016860;intramolecular oxidoreductase activity;0.0121523809169101!GO:0006643;membrane lipid metabolic process;0.0126276050045477!GO:0030308;negative regulation of cell growth;0.0129637907202108!GO:0030127;COPII vesicle coat;0.0130307615907492!GO:0012507;ER to Golgi transport vesicle membrane;0.0130307615907492!GO:0046483;heterocycle metabolic process;0.013049420210194!GO:0035035;histone acetyltransferase binding;0.0137271986992603!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0142525190045533!GO:0006383;transcription from RNA polymerase III promoter;0.0143042768976792!GO:0019318;hexose metabolic process;0.0144701759665637!GO:0008186;RNA-dependent ATPase activity;0.0147151783256998!GO:0030384;phosphoinositide metabolic process;0.0148065006037268!GO:0005813;centrosome;0.014878864819758!GO:0000030;mannosyltransferase activity;0.0150562792126504!GO:0015036;disulfide oxidoreductase activity;0.0156000877962847!GO:0006595;polyamine metabolic process;0.0158094946701958!GO:0051235;maintenance of localization;0.0158570660932262!GO:0044433;cytoplasmic vesicle part;0.0159853910085423!GO:0048518;positive regulation of biological process;0.0162464788900219!GO:0051098;regulation of binding;0.0162659935437931!GO:0031418;L-ascorbic acid binding;0.0162659935437931!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0162833577638813!GO:0032507;maintenance of cellular protein localization;0.016506872133898!GO:0044438;microbody part;0.016506872133898!GO:0044439;peroxisomal part;0.016506872133898!GO:0051168;nuclear export;0.0168983605728401!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0170174086506912!GO:0001726;ruffle;0.0172713364738364!GO:0051028;mRNA transport;0.017276688900153!GO:0042168;heme metabolic process;0.0175784310645624!GO:0030934;anchoring collagen;0.0177960401237057!GO:0065009;regulation of a molecular function;0.0178041008576178!GO:0005684;U2-dependent spliceosome;0.0178041008576178!GO:0005996;monosaccharide metabolic process;0.0183712818468645!GO:0016272;prefoldin complex;0.0186006307134624!GO:0051252;regulation of RNA metabolic process;0.0186006307134624!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0188226736411968!GO:0004667;prostaglandin-D synthase activity;0.0188226736411968!GO:0050802;circadian sleep/wake cycle, sleep;0.0188226736411968!GO:0022410;circadian sleep/wake cycle process;0.0188226736411968!GO:0042749;regulation of circadian sleep/wake cycle;0.0188226736411968!GO:0008033;tRNA processing;0.0189140504431874!GO:0006779;porphyrin biosynthetic process;0.019549592550241!GO:0033014;tetrapyrrole biosynthetic process;0.019549592550241!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0196213062075861!GO:0006352;transcription initiation;0.0198565931019171!GO:0048500;signal recognition particle;0.0201507542281296!GO:0030119;AP-type membrane coat adaptor complex;0.0204847036589218!GO:0030660;Golgi-associated vesicle membrane;0.0204997622965313!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.021170176558585!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.021170176558585!GO:0030521;androgen receptor signaling pathway;0.0223323790388896!GO:0051087;chaperone binding;0.0224067479976327!GO:0008652;amino acid biosynthetic process;0.0235153758804959!GO:0031903;microbody membrane;0.0235400159087558!GO:0005778;peroxisomal membrane;0.0235400159087558!GO:0046519;sphingoid metabolic process;0.023610009236517!GO:0005869;dynactin complex;0.0239166922304714!GO:0048471;perinuclear region of cytoplasm;0.0242800177875803!GO:0050749;apolipoprotein E receptor binding;0.0247413601216736!GO:0045926;negative regulation of growth;0.0253747390807118!GO:0006458;'de novo' protein folding;0.0255140398420847!GO:0051084;'de novo' posttranslational protein folding;0.0255140398420847!GO:0048037;cofactor binding;0.0255140398420847!GO:0030131;clathrin adaptor complex;0.0255140398420847!GO:0009967;positive regulation of signal transduction;0.025872758949073!GO:0005815;microtubule organizing center;0.0260167108206683!GO:0006519;amino acid and derivative metabolic process;0.0266403019106324!GO:0008047;enzyme activator activity;0.0266403019106324!GO:0033559;unsaturated fatty acid metabolic process;0.0266403019106324!GO:0006636;unsaturated fatty acid biosynthetic process;0.0266403019106324!GO:0045185;maintenance of protein localization;0.0267373119868621!GO:0006401;RNA catabolic process;0.0267582668713463!GO:0051325;interphase;0.0269434544628762!GO:0006984;ER-nuclear signaling pathway;0.0273785240191659!GO:0007034;vacuolar transport;0.0277058813106783!GO:0042802;identical protein binding;0.0280047303940581!GO:0008139;nuclear localization sequence binding;0.0288226750607633!GO:0030880;RNA polymerase complex;0.0291156923782272!GO:0006783;heme biosynthetic process;0.0291156923782272!GO:0004860;protein kinase inhibitor activity;0.0292662517844706!GO:0012506;vesicle membrane;0.0294187439149916!GO:0004004;ATP-dependent RNA helicase activity;0.0299972988895872!GO:0008154;actin polymerization and/or depolymerization;0.0299999158650964!GO:0051651;maintenance of cellular localization;0.0300012385582622!GO:0003746;translation elongation factor activity;0.0303667421985894!GO:0019798;procollagen-proline dioxygenase activity;0.0310005938401846!GO:0005694;chromosome;0.0313410317708607!GO:0006914;autophagy;0.0320669139299353!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0320669139299353!GO:0005975;carbohydrate metabolic process;0.0323950465662247!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0330044865741101!GO:0000209;protein polyubiquitination;0.0332920676757251!GO:0006066;alcohol metabolic process;0.0333223098372433!GO:0006739;NADP metabolic process;0.0345094411691841!GO:0006338;chromatin remodeling;0.0352220479645954!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0356424706574154!GO:0030145;manganese ion binding;0.0356424706574154!GO:0006354;RNA elongation;0.0365514864925555!GO:0030833;regulation of actin filament polymerization;0.0365514864925555!GO:0030503;regulation of cell redox homeostasis;0.0365514864925555!GO:0030125;clathrin vesicle coat;0.0365514864925555!GO:0030665;clathrin coated vesicle membrane;0.0365514864925555!GO:0043022;ribosome binding;0.0365677277102791!GO:0015248;sterol transporter activity;0.0367558579292425!GO:0000096;sulfur amino acid metabolic process;0.0368592048407555!GO:0006635;fatty acid beta-oxidation;0.0370178629042824!GO:0006897;endocytosis;0.0371367259945537!GO:0010324;membrane invagination;0.0371367259945537!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0375071142774472!GO:0010257;NADH dehydrogenase complex assembly;0.0375071142774472!GO:0033108;mitochondrial respiratory chain complex assembly;0.0375071142774472!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0375807869681991!GO:0045047;protein targeting to ER;0.0375807869681991!GO:0008168;methyltransferase activity;0.0376571045819486!GO:0031529;ruffle organization and biogenesis;0.0378826029567159!GO:0045893;positive regulation of transcription, DNA-dependent;0.038151567040748!GO:0003711;transcription elongation regulator activity;0.0381823552245012!GO:0030508;thiol-disulfide exchange intermediate activity;0.038189773434903!GO:0016363;nuclear matrix;0.0383753289002875!GO:0033673;negative regulation of kinase activity;0.0383817327426814!GO:0006469;negative regulation of protein kinase activity;0.0383817327426814!GO:0005811;lipid particle;0.0384070061612934!GO:0031543;peptidyl-proline dioxygenase activity;0.0384136690879338!GO:0003923;GPI-anchor transamidase activity;0.0386125580537961!GO:0016255;attachment of GPI anchor to protein;0.0386125580537961!GO:0042765;GPI-anchor transamidase complex;0.0386125580537961!GO:0031323;regulation of cellular metabolic process;0.0387699701898688!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0388199027783743!GO:0006289;nucleotide-excision repair;0.0393785406044467!GO:0016741;transferase activity, transferring one-carbon groups;0.0394700995759671!GO:0006629;lipid metabolic process;0.0396981319037758!GO:0006644;phospholipid metabolic process;0.0410209098489221!GO:0051348;negative regulation of transferase activity;0.0417407303273355!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0422797937861614!GO:0008632;apoptotic program;0.043073645464664!GO:0007021;tubulin folding;0.043740113204898!GO:0022408;negative regulation of cell-cell adhesion;0.0449412026160722!GO:0008629;induction of apoptosis by intracellular signals;0.0462113242514709!GO:0008180;signalosome;0.0468760553715156!GO:0050811;GABA receptor binding;0.0480046945554365!GO:0001953;negative regulation of cell-matrix adhesion;0.048367740505365!GO:0009081;branched chain family amino acid metabolic process;0.0484636032352153!GO:0006839;mitochondrial transport;0.0484636032352153!GO:0006769;nicotinamide metabolic process;0.0491533690372282
|sample_id=11539
|sample_id=11539
|sample_note=
|sample_note=
Line 75: Line 105:
|sample_tissue=umbilical cord
|sample_tissue=umbilical cord
|top_motifs=GLI1..3:2.89618532352;ZNF423:2.71990157573;ESR1:2.49394330015;TAL1_TCF{3,4,12}:2.37947853626;RXR{A,B,G}:2.22287829799;ZNF238:2.21851936596;NR6A1:2.19618676487;RXRA_VDR{dimer}:2.05739259078;RORA:1.99202943619;TFAP4:1.94476718279;GTF2A1,2:1.75598825288;ATF6:1.7219677509;TFAP2{A,C}:1.55332982202;EBF1:1.44940778126;GZF1:1.36756365897;LHX3,4:1.35873516885;AR:1.33872599993;HOX{A5,B5}:1.26959460688;MAFB:1.20564400893;PAX5:1.16455642538;FOXM1:1.12960272486;ZNF148:1.11430239495;PATZ1:1.09565308974;NR3C1:1.04725877137;TFCP2:1.04707763884;SMAD1..7,9:1.01509558385;NR5A1,2:1.00649971545;NANOG{mouse}:0.956688491732;SPZ1:0.876540504464;SOX5:0.821481381778;TLX1..3_NFIC{dimer}:0.772484006468;RREB1:0.728803453103;GTF2I:0.724096736211;POU6F1:0.717255585604;IKZF1:0.706406472563;EN1,2:0.676093210371;TP53:0.671778552255;NKX3-1:0.668731263792;NR1H4:0.630118277531;bHLH_family:0.62270367048;ESRRA:0.550410737008;UFEwm:0.541119741313;PRRX1,2:0.521631545829;MAZ:0.509189864396;HAND1,2:0.46948624194;NANOG:0.467844627391;ZIC1..3:0.458408482302;KLF4:0.439187098309;CEBPA,B_DDIT3:0.436016710789;YY1:0.427945594021;TEAD1:0.378687503107;HLF:0.377148642917;NKX2-3_NKX2-5:0.366296494974;HNF1A:0.354722391678;ALX4:0.339649554045;SP1:0.334772482901;HIF1A:0.332825163762;MZF1:0.324845578751;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.315146505818;GFI1B:0.311313157069;STAT2,4,6:0.294286045566;FOXL1:0.282101336925;HNF4A_NR2F1,2:0.279371065479;ZBTB6:0.24682300282;PAX1,9:0.233195968548;SOX17:0.162432604858;HIC1:0.156785794713;DBP:0.126757197239;TOPORS:0.107487159746;XBP1:0.0997759349185;REST:0.0973543221427;PBX1:0.0945007708644;AIRE:0.0929942256493;ZNF384:0.085475235276;TFAP2B:0.0783602161107;MED-1{core}:0.0569083432173;NHLH1,2:0.0434009525436;PPARG:0.0357694742638;TBP:0.0197402328123;XCPE1{core}:0.0103985174121;EP300:-8.74686040832e-05;EVI1:-0.00746315367557;GATA6:-0.0196312835087;RFX1:-0.0240425802106;NKX2-2,8:-0.032440787748;FOXD3:-0.0460516095849;TEF:-0.055961962999;MTF1:-0.0573018214607;NKX6-1,2:-0.0586563641681;GCM1,2:-0.069226145207;STAT1,3:-0.0826379045148;MYFfamily:-0.0828719796786;HOX{A4,D4}:-0.105984797643;RFX2..5_RFXANK_RFXAP:-0.120854563735;NFATC1..3:-0.152284496586;NFE2:-0.163093724549;GATA4:-0.168804426082;HMX1:-0.180793501508;JUN:-0.182766480466;SREBF1,2:-0.192048836474;MTE{core}:-0.192538901815;POU2F1..3:-0.203825107925;RUNX1..3:-0.210298757421;LEF1_TCF7_TCF7L1,2:-0.213846941445;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.214189327878;HOXA9_MEIS1:-0.217237238352;SRF:-0.228928916364;HMGA1,2:-0.25421304991;BACH2:-0.255227557819;FOS_FOS{B,L1}_JUN{B,D}:-0.258827977293;NFKB1_REL_RELA:-0.265111158722;NFIL3:-0.266752783903;BPTF:-0.267469044706;ZNF143:-0.27307274606;PRDM1:-0.288830353982;MYBL2:-0.296732371482;NFE2L2:-0.303175683156;HES1:-0.307718722112;ONECUT1,2:-0.388392308163;TLX2:-0.401349649307;CDC5L:-0.457996426235;HOX{A6,A7,B6,B7}:-0.47928336432;PAX2:-0.490895687599;HSF1,2:-0.50188803373;LMO2:-0.503186677176;FOSL2:-0.513678872941;ATF2:-0.524657284275;ELK1,4_GABP{A,B1}:-0.532278688851;EGR1..3:-0.532800271554;ETS1,2:-0.559743122973;NFE2L1:-0.559971172571;DMAP1_NCOR{1,2}_SMARC:-0.569565958106;MEF2{A,B,C,D}:-0.582437264151;RBPJ:-0.586009778924;FOX{D1,D2}:-0.587439970457;SPIB:-0.588978938093;GFI1:-0.609971327114;CRX:-0.623115847396;FOXQ1:-0.628609927426;TBX4,5:-0.655861098747;IRF1,2:-0.680914765374;ELF1,2,4:-0.681305474535;T:-0.686996262068;NRF1:-0.707595804081;CUX2:-0.712079021257;SNAI1..3:-0.712652804472;STAT5{A,B}:-0.723061136573;ATF4:-0.725108470396;ZEB1:-0.738210479429;TGIF1:-0.742879162355;ARID5B:-0.744976850727;SPI1:-0.807309126355;FOXP3:-0.818885030841;SOX2:-0.838385524585;FOX{F1,F2,J1}:-0.839960780574;VSX1,2:-0.845073050048;ADNP_IRX_SIX_ZHX:-0.869450289992;ATF5_CREB3:-0.872766780124;IRF7:-0.881601642665;FOXA2:-0.899022371802;FOXN1:-0.93880111146;POU3F1..4:-0.950426298662;PAX4:-0.95641574408;AHR_ARNT_ARNT2:-0.973020971327;SOX{8,9,10}:-1.02123024194;NFIX:-1.02699012022;NKX3-2:-1.0312278082;POU5F1:-1.03564781203;NFY{A,B,C}:-1.0402599951;PAX6:-1.06241823464;E2F1..5:-1.11591302018;PAX3,7:-1.15696383193;CDX1,2,4:-1.17284441761;CREB1:-1.19354585873;BREu{core}:-1.22134030044;FOXO1,3,4:-1.26156864847;NKX2-1,4:-1.27415256485;OCT4_SOX2{dimer}:-1.38793806598;MYOD1:-1.3974574281;PDX1:-1.40559274957;MYB:-1.42666638106;FOXP1:-1.44304434209;ZFP161:-1.54847652197;PITX1..3:-1.62804624548;ZBTB16:-1.63909710535;POU1F1:-1.65052793743;TFDP1:-1.68519580826;PAX8:-1.70401260058;FOX{I1,J2}:-2.01974557949;ALX1:-2.0662018376;IKZF2:-2.16314562556;HBP1_HMGB_SSRP1_UBTF:-2.26428830599
|top_motifs=GLI1..3:2.89618532352;ZNF423:2.71990157573;ESR1:2.49394330015;TAL1_TCF{3,4,12}:2.37947853626;RXR{A,B,G}:2.22287829799;ZNF238:2.21851936596;NR6A1:2.19618676487;RXRA_VDR{dimer}:2.05739259078;RORA:1.99202943619;TFAP4:1.94476718279;GTF2A1,2:1.75598825288;ATF6:1.7219677509;TFAP2{A,C}:1.55332982202;EBF1:1.44940778126;GZF1:1.36756365897;LHX3,4:1.35873516885;AR:1.33872599993;HOX{A5,B5}:1.26959460688;MAFB:1.20564400893;PAX5:1.16455642538;FOXM1:1.12960272486;ZNF148:1.11430239495;PATZ1:1.09565308974;NR3C1:1.04725877137;TFCP2:1.04707763884;SMAD1..7,9:1.01509558385;NR5A1,2:1.00649971545;NANOG{mouse}:0.956688491732;SPZ1:0.876540504464;SOX5:0.821481381778;TLX1..3_NFIC{dimer}:0.772484006468;RREB1:0.728803453103;GTF2I:0.724096736211;POU6F1:0.717255585604;IKZF1:0.706406472563;EN1,2:0.676093210371;TP53:0.671778552255;NKX3-1:0.668731263792;NR1H4:0.630118277531;bHLH_family:0.62270367048;ESRRA:0.550410737008;UFEwm:0.541119741313;PRRX1,2:0.521631545829;MAZ:0.509189864396;HAND1,2:0.46948624194;NANOG:0.467844627391;ZIC1..3:0.458408482302;KLF4:0.439187098309;CEBPA,B_DDIT3:0.436016710789;YY1:0.427945594021;TEAD1:0.378687503107;HLF:0.377148642917;NKX2-3_NKX2-5:0.366296494974;HNF1A:0.354722391678;ALX4:0.339649554045;SP1:0.334772482901;HIF1A:0.332825163762;MZF1:0.324845578751;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.315146505818;GFI1B:0.311313157069;STAT2,4,6:0.294286045566;FOXL1:0.282101336925;HNF4A_NR2F1,2:0.279371065479;ZBTB6:0.24682300282;PAX1,9:0.233195968548;SOX17:0.162432604858;HIC1:0.156785794713;DBP:0.126757197239;TOPORS:0.107487159746;XBP1:0.0997759349185;REST:0.0973543221427;PBX1:0.0945007708644;AIRE:0.0929942256493;ZNF384:0.085475235276;TFAP2B:0.0783602161107;MED-1{core}:0.0569083432173;NHLH1,2:0.0434009525436;PPARG:0.0357694742638;TBP:0.0197402328123;XCPE1{core}:0.0103985174121;EP300:-8.74686040832e-05;EVI1:-0.00746315367557;GATA6:-0.0196312835087;RFX1:-0.0240425802106;NKX2-2,8:-0.032440787748;FOXD3:-0.0460516095849;TEF:-0.055961962999;MTF1:-0.0573018214607;NKX6-1,2:-0.0586563641681;GCM1,2:-0.069226145207;STAT1,3:-0.0826379045148;MYFfamily:-0.0828719796786;HOX{A4,D4}:-0.105984797643;RFX2..5_RFXANK_RFXAP:-0.120854563735;NFATC1..3:-0.152284496586;NFE2:-0.163093724549;GATA4:-0.168804426082;HMX1:-0.180793501508;JUN:-0.182766480466;SREBF1,2:-0.192048836474;MTE{core}:-0.192538901815;POU2F1..3:-0.203825107925;RUNX1..3:-0.210298757421;LEF1_TCF7_TCF7L1,2:-0.213846941445;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.214189327878;HOXA9_MEIS1:-0.217237238352;SRF:-0.228928916364;HMGA1,2:-0.25421304991;BACH2:-0.255227557819;FOS_FOS{B,L1}_JUN{B,D}:-0.258827977293;NFKB1_REL_RELA:-0.265111158722;NFIL3:-0.266752783903;BPTF:-0.267469044706;ZNF143:-0.27307274606;PRDM1:-0.288830353982;MYBL2:-0.296732371482;NFE2L2:-0.303175683156;HES1:-0.307718722112;ONECUT1,2:-0.388392308163;TLX2:-0.401349649307;CDC5L:-0.457996426235;HOX{A6,A7,B6,B7}:-0.47928336432;PAX2:-0.490895687599;HSF1,2:-0.50188803373;LMO2:-0.503186677176;FOSL2:-0.513678872941;ATF2:-0.524657284275;ELK1,4_GABP{A,B1}:-0.532278688851;EGR1..3:-0.532800271554;ETS1,2:-0.559743122973;NFE2L1:-0.559971172571;DMAP1_NCOR{1,2}_SMARC:-0.569565958106;MEF2{A,B,C,D}:-0.582437264151;RBPJ:-0.586009778924;FOX{D1,D2}:-0.587439970457;SPIB:-0.588978938093;GFI1:-0.609971327114;CRX:-0.623115847396;FOXQ1:-0.628609927426;TBX4,5:-0.655861098747;IRF1,2:-0.680914765374;ELF1,2,4:-0.681305474535;T:-0.686996262068;NRF1:-0.707595804081;CUX2:-0.712079021257;SNAI1..3:-0.712652804472;STAT5{A,B}:-0.723061136573;ATF4:-0.725108470396;ZEB1:-0.738210479429;TGIF1:-0.742879162355;ARID5B:-0.744976850727;SPI1:-0.807309126355;FOXP3:-0.818885030841;SOX2:-0.838385524585;FOX{F1,F2,J1}:-0.839960780574;VSX1,2:-0.845073050048;ADNP_IRX_SIX_ZHX:-0.869450289992;ATF5_CREB3:-0.872766780124;IRF7:-0.881601642665;FOXA2:-0.899022371802;FOXN1:-0.93880111146;POU3F1..4:-0.950426298662;PAX4:-0.95641574408;AHR_ARNT_ARNT2:-0.973020971327;SOX{8,9,10}:-1.02123024194;NFIX:-1.02699012022;NKX3-2:-1.0312278082;POU5F1:-1.03564781203;NFY{A,B,C}:-1.0402599951;PAX6:-1.06241823464;E2F1..5:-1.11591302018;PAX3,7:-1.15696383193;CDX1,2,4:-1.17284441761;CREB1:-1.19354585873;BREu{core}:-1.22134030044;FOXO1,3,4:-1.26156864847;NKX2-1,4:-1.27415256485;OCT4_SOX2{dimer}:-1.38793806598;MYOD1:-1.3974574281;PDX1:-1.40559274957;MYB:-1.42666638106;FOXP1:-1.44304434209;ZFP161:-1.54847652197;PITX1..3:-1.62804624548;ZBTB16:-1.63909710535;POU1F1:-1.65052793743;TFDP1:-1.68519580826;PAX8:-1.70401260058;FOX{I1,J2}:-2.01974557949;ALX1:-2.0662018376;IKZF2:-2.16314562556;HBP1_HMGB_SSRP1_UBTF:-2.26428830599
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11539-120A9;search_select_hide=table117:FF:11539-120A9
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:Mesenchymal Stem Cells - umbilical, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11347
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical cord
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7535
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005491
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11347 CAGE DRX008357 DRR009229
Accession ID Hg19

Library idBAMCTSS
CNhs11347 DRZ000654 DRZ002039
Accession ID Hg38

Library idBAMCTSS
CNhs11347 DRZ012004 DRZ013389
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005491
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10005.CAGATC sRNA-Seq DRX037060 DRR041426
Accession ID Hg19

Library idBAMCTSS
SRhi10005.CAGATC DRZ007068


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0108
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.488
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.179
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0208
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.314
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.266
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.319
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.681
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.284
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.312
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.466
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.27
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.188
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.535
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0332
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.319
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal1.147
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.728
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.42
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.032
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.501
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11347

Jaspar motifP-value
MA0002.20.779
MA0003.10.148
MA0004.10.986
MA0006.10.222
MA0007.10.0191
MA0009.10.357
MA0014.10.763
MA0017.10.0974
MA0018.20.0234
MA0019.10.287
MA0024.12.86915e-5
MA0025.10.0504
MA0027.10.341
MA0028.10.363
MA0029.10.308
MA0030.10.329
MA0031.10.105
MA0035.20.382
MA0038.10.799
MA0039.20.733
MA0040.10.49
MA0041.10.335
MA0042.10.683
MA0043.10.0287
MA0046.10.122
MA0047.20.485
MA0048.10.666
MA0050.10.00213
MA0051.11.6027e-4
MA0052.10.024
MA0055.10.416
MA0057.10.422
MA0058.10.957
MA0059.10.771
MA0060.10.00101
MA0061.10.81
MA0062.20.00553
MA0065.20.0219
MA0066.10.192
MA0067.10.0712
MA0068.10.556
MA0069.10.0828
MA0070.10.168
MA0071.10.00525
MA0072.10.0824
MA0073.10.57
MA0074.10.0473
MA0076.10.135
MA0077.10.683
MA0078.10.708
MA0079.20.736
MA0080.28.48607e-7
MA0081.10.0198
MA0083.10.805
MA0084.10.111
MA0087.10.344
MA0088.10.627
MA0090.10.377
MA0091.10.00236
MA0092.10.218
MA0093.10.982
MA0099.20.0596
MA0100.10.0887
MA0101.10.17
MA0102.20.544
MA0103.10.409
MA0104.20.453
MA0105.10.296
MA0106.10.58
MA0107.10.2
MA0108.20.18
MA0111.10.901
MA0112.29.07734e-4
MA0113.11.74365e-4
MA0114.10.0709
MA0115.10.984
MA0116.10.0679
MA0117.10.502
MA0119.10.165
MA0122.10.697
MA0124.10.71
MA0125.10.226
MA0131.10.353
MA0135.10.639
MA0136.11.43014e-6
MA0137.20.722
MA0138.20.272
MA0139.10.709
MA0140.10.48
MA0141.10.112
MA0142.10.349
MA0143.10.623
MA0144.10.45
MA0145.10.139
MA0146.10.00524
MA0147.10.483
MA0148.10.95
MA0149.10.411
MA0150.10.318
MA0152.10.505
MA0153.10.157
MA0154.10.0691
MA0155.10.0966
MA0156.11.27507e-6
MA0157.10.245
MA0159.10.0728
MA0160.10.349
MA0162.10.139
MA0163.10.00203
MA0164.10.727
MA0258.10.0158
MA0259.10.44



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11347

Novel motifP-value
10.622
100.979
1000.837
1010.977
1020.72
1030.232
1040.781
1050.414
1060.0678
1070.0528
1080.272
1090.218
110.131
1100.244
1110.616
1120.932
1130.0972
1140.6
1150.329
1160.0908
1170.402
1180.324
1190.865
120.798
1200.111
1210.921
1220.407
1230.00248
1240.483
1250.111
1260.412
1270.502
1280.202
1290.51
130.621
1300.47
1310.37
1320.183
1330.573
1340.643
1350.582
1360.531
1370.0734
1380.35
1390.00492
140.78
1400.168
1410.52
1420.488
1430.153
1440.117
1450.512
1460.352
1470.29
1480.831
1490.00108
150.882
1500.459
1510.401
1520.0682
1530.387
1540.429
1550.468
1560.689
1570.0887
1580.974
1590.968
160.0283
1600.0575
1610.348
1620.294
1630.955
1640.537
1650.555
1660.397
1670.341
1680.427
1690.0371
170.234
180.0759
190.0297
20.263
200.902
210.123
220.0423
230.157
240.403
250.587
260.219
270.487
280.287
290.591
30.278
300.224
310.237
321.26866e-15
330.894
340.151
350.875
360.563
370.0997
380.639
390.264
40.945
400.221
410.143
420.95
430.124
440.374
450.308
460.148
470.533
480.222
490.159
50.778
500.334
510.186
520.614
530.633
540.361
550.632
560.309
570.884
580.856
590.0418
60.401
600.43
610.539
620.422
630.302
640.295
650.0687
660.567
670.865
680.0325
690.189
70.865
700.0453
710.128
720.883
730.0524
740.839
750.271
760.796
770.0267
780.66
790.00453
80.186
800.69
810.847
820.131
830.948
840.199
850.0772
860.845
870.584
880.247
890.0323
90.12
900.422
910.802
920.142
930.613
940.306
950.345
960.68
970.649
980.411
990.109



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11347


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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