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{{f5samples
{{f5samples
|id=FF:11536-120A6
|DRA_sample_Accession=CAGE@SAMD00004842
|name=Mesenchymal Stem Cells - bone marrow, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004842
|sample_id=11536
|accession_numbers=CAGE;DRX008351;DRR009223;DRZ000648;DRZ002033;DRZ011998;DRZ013383
|rna_tube_id=120A6
|accession_numbers_RNASeq=sRNA-Seq;DRX037016;DRR041382;DRZ007024
|rna_box=120
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|rna_position=A6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
|sample_cell_lot=lot:2069
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC7505
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=bone marrow
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.7
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=mesenchymal stem cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.39
|sample_note=
|profile_hcage=CNhs11344,LSID769,release014,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10003,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002092,CL:0002320,CL:0002371,CL:0002540
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000097
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.94!227.11!TWIST1;;chr14:61116183..61116208,-!p1@SIX1!1.66!162.56!SIX1;;chr12:66218255..66218304,+!p3@HMGA2!1.57!94.91!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.50!873.73!HMGA1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.46!27.52!HOXC5;;chr7:27205136..27205164,-!p1@HOXA9!1.45!27.01!HOXA9;;chr5:134369905..134369972,-!p1@PITX1!1.35!32.15!PITX1;;chr7:96654133..96654150,-!p1@DLX5!1.32!19.80!DLX5;;chr6:45296048..45296082,+!p1@RUNX2!1.30!21.61!RUNX2;;chr1:170633348..170633399,+!p2@PRRX1!1.27!24.18!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.27!20.06!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.26!87.19!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.26!52.98!TBX2;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.72!HOXA10;;chr12:54380404..54380433,+!p3@HOXC10!1.24!16.46!HOXC10;;chr11:65686802..65686818,+!p6@DRAP1!1.21!26.24!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.19!21.09!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.18!34.72!FOXC2;;chr12:54379029..54379057,+!p2@HOXC10!1.18!14.15!HOXC10;;chr7:27224795..27224840,-!p2@HOXA11!1.17!13.63!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.17!13.63!HOXA11;;chr12:66218598..66218645,+!p2@HMGA2!1.16!62.24!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.13!23.92!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.12!15.95!PRRX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.11!20.06!CREB3L1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.11!12.86!GLIS1;;chr4:174451370..174451387,-!p1@HAND2!1.07!10.80!HAND2;;chr12:54380036..54380091,+!p4@HOXC10!1.05!10.29!HOXC10;;chr16:54320101..54320125,-!p4@IRX3!1.03!13.89!IRX3;;chr12:54378923..54378966,+!p1@HOXC10!1.03!9.77!HOXC10;;chr8:49833948..49833973,-!p2@SNAI2!1.02!60.70!SNAI2;;chr12:53614115..53614154,-!p1@RARG!1.02!50.93!RARG;;chr11:65686732..65686756,+!p2@DRAP1!1.02!40.38!DRAP1;;chr7:27196217..27196246,-!p2@HOXA7!1.01!9.26!HOXA7;;chr6:34204672..34204692,+!p1@HMGA1!1.00!1034.23!HMGA1;;chr7:27205106..27205134,-!p2@HOXA9!1.00!9.00!HOXA9;;chr11:65687362..65687436,+!p3@DRAP1!0.98!39.87!DRAP1;;chr12:54393880..54393962,+!p1@HOXC9!0.98!8.49!HOXC9;;chr2:200322654..200322707,-!p2@SATB2!0.95!11.83!SATB2;;chr9:132427883..132427951,+!p2@PRRX2!0.95!7.97!PRRX2;;chr11:65686952..65686975,+!p5@DRAP1!0.94!43.73!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.55!TWIST1;;chr17:59477197..59477212,+!p2@TBX2!0.93!13.37!TBX2;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.83!HMGA2;;chr5:134369879..134369898,-!p2@PITX1!0.93!7.46!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.46!HOXA3;;chr7:96654026..96654061,-!p2@DLX5!0.93!7.46!DLX5;;chr12:66218836..66218888,+!p1@HMGA2!0.91!69.70!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!0.91!7.20!SOX11;;chr2:85981107..85981120,+!p3@ATOH8!0.91!7.20!ATOH8;;chr8:49833978..49833996,-!p1@SNAI2!0.90!150.21!SNAI2;;chr1:170632959..170632987,+!p4@PRRX1!0.90!7.72!PRRX1;;chr16:54320617..54320643,-!p3@IRX3!0.88!8.49!IRX3;;chr4:174450089..174450153,-!p2@HAND2!0.87!6.43!HAND2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.87!6.43!HOXC5;;chr14:61116168..61116180,-!p2@SIX1!0.86!7.20!SIX1;;chr19:47523058..47523114,+!p1@NPAS1!0.86!6.17!NPAS1;;chr17:59477275..59477286,+!p3@TBX2!0.84!7.97!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.92!KDM5D;;chr5:92918919..92918942,+!p1@NR2F1!0.83!27.52!NR2F1;;chr2:85981222..85981259,+!p2@ATOH8!0.83!9.77!ATOH8;;chr2:85980951..85981004,+!p1@ATOH8!0.82!9.52!ATOH8;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.66!HOXD8;;chr3:157823517..157823562,-!p1@SHOX2!0.81!5.92!SHOX2;;chr4:299227..299272,-!p1@ZNF732!0.81!5.40!ZNF732;;chr20:30193083..30193098,+!p1@ID1!0.80!465.55!ID1;;chr1:23885981..23886002,-!p1@ID3!0.79!989.99!ID3;;chr6:31126291..31126399,+!p1@TCF19!0.79!53.50!TCF19;;chr16:54964740..54964789,+!p1@IRX5!0.79!7.72!IRX5;;chr20:50721803..50721857,-!p2@ZFP64!0.78!8.23!ZFP64;;chr16:54320646..54320672,-!p2@IRX3!0.77!7.72!IRX3;;chr16:54320158..54320200,-!p5@IRX3!0.77!7.20!IRX3;;chr6:85473156..85473210,-!p2@TBX18!0.77!6.17!TBX18;;chr12:54394309..54394336,+!p2@HOXC9!0.77!4.89!HOXC9;;chr2:85981027..85981047,+!p8@ATOH8!0.77!4.89!ATOH8;;chr2:85981073..85981091,+!p5@ATOH8!0.75!4.63!ATOH8;;chr6:134210243..134210257,+!p1@TCF21!0.75!4.63!TCF21;;chr12:54378984..54378996,+!p7@HOXC10!0.75!4.63!HOXC10;;chr5:176738887..176738934,-!p1@MXD3!0.74!33.18!MXD3;;chr5:321810..321877,+!p1@AHRR!0.74!15.69!AHRR;;chr16:54320675..54320715,-!p1@IRX3!0.74!10.29!IRX3;;chr11:65687222..65687240,+!p7@DRAP1!0.74!5.92!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.73!7.97!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!0.73!6.69!NFIX;;chr11:65687243..65687276,+!p8@DRAP1!0.73!6.17!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!0.73!5.14!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!0.73!4.37!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.73!4.37!RUNX3;;chr4:109089095..109089144,-!p6@LEF1!0.73!4.37!LEF1;;chr9:77112244..77112262,+!p1@RORB!0.72!4.89!RORB;;chr19:44037546..44037594,+!p1@ZNF575!0.71!9.26!ZNF575;;chr15:57511609..57511651,+!p2@TCF12!0.70!7.20!TCF12;;chr11:65667846..65667868,-!p1@FOSL1!0.69!117.29!FOSL1;;chr19:13134457..13134462,+!p5@NFIX!0.69!7.46!NFIX;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.89!HOXC4;;chr12:54380112..54380126,+!p5@HOXC10!0.69!3.86!HOXC10;;chr12:54402745..54402788,+!p1@HOXC8!0.69!3.86!HOXC8;;chr19:46801639..46801699,+!p1@HIF3A!0.69!3.86!HIF3A;;chr2:172967242..172967265,-!p2@DLX2!0.69!3.86!DLX2;;chr11:65687158..65687216,+!p4@DRAP1!0.68!24.95!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.14!BCL3;;chr12:2986275..2986363,-!p1@FOXM1!0.67!42.18!FOXM1;;chr11:47279504..47279563,+!p1@NR1H3!0.67!9.26!NR1H3;;chr19:38720294..38720348,-!p1@DPF1!0.66!4.63!DPF1;;chr2:45236540..45236577,-!p1@SIX2!0.66!3.60!SIX2;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.60!HOXA7;;chr11:65667884..65667895,-!p2@FOSL1!0.65!15.43!FOSL1;;chr2:19558373..19558392,-!p1@OSR1!0.65!10.55!OSR1;;chr20:42295745..42295765,+!p1@MYBL2!0.64!64.82!MYBL2;;chr12:2986206..2986258,-!p2@FOXM1!0.64!23.66!FOXM1;;chr20:42295713..42295738,+!p2@MYBL2!0.64!23.15!MYBL2;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.75!FOXD1;;chr19:9609272..9609297,-!p1@ZNF560!0.64!3.34!ZNF560;;chr1:40105299..40105326,-!p1@HEYL!0.64!3.34!HEYL;;chr2:172949484..172949522,+!p1@DLX1!0.64!3.34!DLX1;;chr16:86600870..86600921,+!p2@FOXC2!0.64!3.34!FOXC2;;chr7:44143925..44143970,+!p1@AEBP1!0.63!85.91!AEBP1;;chr2:239756671..239756732,+!p1@TWIST2!0.63!12.09!TWIST2;;chr3:12329397..12329433,+!p2@PPARG!0.63!8.23!PPARG;;chr6:34204973..34204990,+!p4@HMGA1!0.62!50.93!HMGA1;;chr12:7079780..7079791,-!p2@PHB2!0.62!19.55!PHB2;;chr11:63684602..63684664,-!p1@RCOR2!0.62!6.94!RCOR2;;chr1:247171347..247171366,-!p2@ZNF695!0.62!6.43!ZNF695;;chr12:66218573..66218596,+!p7@HMGA2!0.61!4.89!HMGA2;;chr2:85980919..85980942,+!p4@ATOH8!0.61!3.34!ATOH8;;chr16:86600458..86600461,+!p3@FOXC2!0.61!3.09!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.61!3.09!ETV4;;chr7:27183263..27183284,-!p2@HOXA5!0.61!3.09!HOXA5;;chr12:54394059..54394088,+!p3@HOXC9!0.61!3.09!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.61!3.09!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.61!3.09!HMGA2;;chr11:65686855..65686946,+!p1@DRAP1!0.59!267.75!DRAP1;;chr14:75988771..75988826,+!p1@BATF!0.59!4.12!BATF;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.15!ZFHX4;;chr7:27183291..27183324,-!p1@HOXA5!0.58!2.83!HOXA5;;chr7:27212501..27212513,-!p5@HOXA10!0.58!2.83!HOXA10;;chr2:45236579..45236596,-!p2@SIX2!0.58!2.83!SIX2;;chr2:85981008..85981025,+!p7@ATOH8!0.58!2.83!ATOH8;;chr17:59477403..59477414,+!p4@TBX2!0.58!2.83!TBX2;;chr17:41623692..41623715,-!p1@ETV4!0.57!13.89!ETV4;;chr2:121493425..121493474,+!p1@GLI2!0.57!6.94!GLI2;;chr17:41623009..41623053,-!p4@ETV4!0.57!4.89!ETV4;;chr1:8938766..8938774,-!p2@ENO1!0.56!226.86!ENO1;;chr15:96874012..96874042,+!p2@NR2F2!0.56!29.58!NR2F2;;chr19:1592714..1592762,-!p1@MBD3!0.56!24.69!MBD3;;chr2:172967621..172967637,-!p1@DLX2!0.56!8.23!DLX2;;chr5:158526917..158526932,-!p1@EBF1!0.56!7.72!EBF1;;chr6:1610293..1610310,+!p1@FOXC1!0.56!4.89!FOXC1;;chr12:66218443..66218461,+!p8@HMGA2!0.56!3.60!HMGA2;;chr17:47492252..47492265,-!p2@PHB!0.55!12.86!PHB;;chr7:42276787..42276815,-!p1@GLI3!0.55!7.97!GLI3;;chr2:214015111..214015179,-!p1@IKZF2!0.55!5.14!IKZF2;;chr12:66218152..66218174,+!p10@HMGA2!0.55!2.83!HMGA2;;chr12:54394416..54394467,+!p5@HOXC9!0.55!2.57!HOXC9;;chr1:119530706..119530736,-!p3@TBX15!0.55!2.57!TBX15;;chr1:170632439..170632465,+!p11@PRRX1!0.55!2.57!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.55!2.57!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.55!2.57!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.55!2.57!PRRX1;;chr15:67391010..67391046,+!p13@SMAD3!0.55!2.57!SMAD3;;chr16:54320280..54320291,-!p9@IRX3!0.55!2.57!IRX3;;chr16:54320302..54320317,-!p10@IRX3!0.55!2.57!IRX3;;chr2:85980768..85980783,+!p10@ATOH8!0.55!2.57!ATOH8;;chr15:67357924..67357952,+!p2@SMAD3!0.54!20.58!SMAD3;;chr1:8484314..8484348,-!p7@RERE!0.54!7.97!RERE;;chr3:12329358..12329393,+!p3@PPARG!0.54!7.20!PPARG;;chr2:169312600..169312606,+!p2@CERS6!0.54!4.37!CERS6;;chr8:60031809..60031835,-!p4@TOX!0.54!3.34!TOX;;chr1:8938709..8938720,-!p3@ENO1!0.53!147.89!ENO1;;chr1:8483878..8483907,-!p4@RERE!0.53!11.32!RERE;;chr2:200323414..200323455,-!p1@SATB2!0.53!5.92!SATB2;;chr2:71127699..71127744,+!p1@VAX2!0.53!5.66!VAX2;;chr6:85474299..85474324,-!p1@TBX18!0.53!4.89!TBX18;;chr11:113930291..113930339,+!p2@ZBTB16!0.53!4.37!ZBTB16;;chr12:54447637..54447659,+!p4@HOXC4!0.52!2.31!HOXC4;;chr5:2751762..2751784,-!p1@IRX2!0.52!2.31!IRX2;;chr7:27196196..27196210,-!p5@HOXA7!0.52!2.31!HOXA7;;chr7:27224911..27224922,-!p5@HOXA11!0.52!2.31!HOXA11;;chr16:54319010..54319041,-!p8@IRX3!0.52!2.31!IRX3;;chr2:96012397..96012417,+!p3@KCNIP3!0.52!2.31!KCNIP3;;chr4:57522598..57522664,-!p3@HOPX!0.52!2.31!HOPX;;chr1:8938736..8938756,-!p1@ENO1!0.51!3212.26!ENO1;;chr19:3366570..3366619,+!p1@NFIC!0.51!93.88!NFIC;;chr19:49865646..49865718,-!p1@TEAD2!0.51!24.69!TEAD2;;chr11:61520075..61520136,+!p1@C11orf9!0.51!5.66!C11orf9;;chrX:66763856..66763896,+!p1@AR!0.51!3.60!AR;;chr7:44143978..44143989,+!p2@AEBP1!0.50!4.63!AEBP1;;chrX:66763815..66763854,+!p2@AR!0.50!3.09!AR;;c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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg38.nobarcode.ctss.bed.gz
|id=FF:11536-120A6
|is_a=EFO:0002091;;FF:0000097
|is_obsolete=
|library_id=CNhs11344
|library_id_phase_based=2:CNhs11344
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11536
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.CAGATC.11536
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11536
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.CAGATC.11536
|name=Mesenchymal Stem Cells - bone marrow, donor1
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11344,LSID769,release014,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10003,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_catalog_number=SC7505
|rna_concentration=1.39
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=A6
|rna_rin=9.7
|rna_sample_type=total RNA
|rna_tube_id=120A6
|rna_weight_ug=10
|rnaseq_library_id=SRhi10003.CAGATC
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=lot:2069
|sample_cell_type=mesenchymal stem cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.37320145625665e-244!GO:0043226;organelle;1.64840287433034e-202!GO:0043229;intracellular organelle;2.21316637143388e-202!GO:0043231;intracellular membrane-bound organelle;1.34027302505531e-201!GO:0043227;membrane-bound organelle;4.34968495405912e-201!GO:0005737;cytoplasm;2.12069753952719e-189!GO:0044422;organelle part;7.22531268716885e-154!GO:0044446;intracellular organelle part;1.00587860818751e-152!GO:0044444;cytoplasmic part;2.80024867758727e-141!GO:0032991;macromolecular complex;1.12042566916489e-97!GO:0044237;cellular metabolic process;2.17078817627624e-92!GO:0044238;primary metabolic process;3.70170339775877e-91!GO:0030529;ribonucleoprotein complex;6.42983145705535e-91!GO:0005739;mitochondrion;6.66329477446822e-82!GO:0043170;macromolecule metabolic process;3.41388025159243e-81!GO:0005634;nucleus;2.48301572537989e-77!GO:0043233;organelle lumen;3.60495828343086e-75!GO:0031974;membrane-enclosed lumen;3.60495828343086e-75!GO:0044428;nuclear part;5.1402613514398e-70!GO:0005515;protein binding;2.69578372156472e-68!GO:0003723;RNA binding;8.51805921324335e-65!GO:0005840;ribosome;4.23519337934959e-59!GO:0044429;mitochondrial part;1.57152131627517e-54!GO:0031090;organelle membrane;5.80860947555314e-54!GO:0003735;structural constituent of ribosome;1.2372574592833e-52!GO:0006412;translation;2.62028265856378e-51!GO:0009058;biosynthetic process;4.34848227742146e-49!GO:0043234;protein complex;1.11173207831853e-47!GO:0016043;cellular component organization and biogenesis;9.32997206958687e-47!GO:0031967;organelle envelope;1.31297140265755e-45!GO:0006396;RNA processing;1.92227403602971e-45!GO:0031975;envelope;3.41567339826317e-45!GO:0044249;cellular biosynthetic process;6.31376403838331e-45!GO:0019538;protein metabolic process;7.78784017139875e-45!GO:0033279;ribosomal subunit;3.32310641863512e-44!GO:0043283;biopolymer metabolic process;3.88798866818959e-44!GO:0009059;macromolecule biosynthetic process;2.75450495904701e-42!GO:0031981;nuclear lumen;6.2224213811282e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.34332600126149e-41!GO:0010467;gene expression;5.24402188417208e-41!GO:0044260;cellular macromolecule metabolic process;2.07874055180808e-39!GO:0044267;cellular protein metabolic process;1.28834235148003e-38!GO:0015031;protein transport;1.95328294445044e-38!GO:0033036;macromolecule localization;5.91671818871865e-38!GO:0005829;cytosol;3.24552720555146e-37!GO:0043228;non-membrane-bound organelle;4.25989930565819e-37!GO:0043232;intracellular non-membrane-bound organelle;4.25989930565819e-37!GO:0005740;mitochondrial envelope;2.95169387920231e-36!GO:0006996;organelle organization and biogenesis;2.80845632391633e-35!GO:0045184;establishment of protein localization;3.86878699023169e-35!GO:0008104;protein localization;4.25739115452048e-35!GO:0016071;mRNA metabolic process;4.15050987040751e-34!GO:0031966;mitochondrial membrane;1.12777724048007e-33!GO:0006259;DNA metabolic process;6.7166695818078e-33!GO:0046907;intracellular transport;9.31616786384912e-33!GO:0019866;organelle inner membrane;4.24890867894316e-32!GO:0065003;macromolecular complex assembly;7.70022931878471e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.65140464024429e-31!GO:0008380;RNA splicing;3.68936823413581e-31!GO:0005743;mitochondrial inner membrane;1.15637591601565e-30!GO:0006397;mRNA processing;8.31867005698703e-30!GO:0022607;cellular component assembly;9.92921758748049e-29!GO:0006886;intracellular protein transport;2.450375455246e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.36334376395295e-27!GO:0007049;cell cycle;6.57677967169484e-25!GO:0044445;cytosolic part;1.71704399956072e-24!GO:0005654;nucleoplasm;4.8065881987823e-24!GO:0005681;spliceosome;2.54326789923064e-23!GO:0031980;mitochondrial lumen;1.08039040430017e-22!GO:0005759;mitochondrial matrix;1.08039040430017e-22!GO:0015934;large ribosomal subunit;1.10897738033809e-22!GO:0015935;small ribosomal subunit;1.40748547718088e-22!GO:0003676;nucleic acid binding;6.86653698418444e-22!GO:0006119;oxidative phosphorylation;1.0020000553133e-21!GO:0044455;mitochondrial membrane part;1.23093253174791e-21!GO:0000278;mitotic cell cycle;1.25343753288113e-20!GO:0051649;establishment of cellular localization;1.3531561824265e-20!GO:0051641;cellular localization;2.4395704846479e-20!GO:0022402;cell cycle process;7.62672939739128e-20!GO:0044451;nucleoplasm part;7.74079808333989e-20!GO:0005783;endoplasmic reticulum;1.29622598889416e-19!GO:0006457;protein folding;1.68534129235603e-19!GO:0012505;endomembrane system;2.00623613652025e-19!GO:0005730;nucleolus;7.91592743287713e-19!GO:0051186;cofactor metabolic process;1.08532318211931e-18!GO:0000166;nucleotide binding;1.13938756767698e-18!GO:0005746;mitochondrial respiratory chain;3.91851873811812e-18!GO:0048770;pigment granule;1.23829182718024e-17!GO:0042470;melanosome;1.23829182718024e-17!GO:0044432;endoplasmic reticulum part;1.77635884102587e-17!GO:0016462;pyrophosphatase activity;2.96249923910031e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.9584476108827e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;4.6885746596772e-17!GO:0016874;ligase activity;5.95663828349512e-17!GO:0005761;mitochondrial ribosome;7.69255350511376e-17!GO:0000313;organellar ribosome;7.69255350511376e-17!GO:0005694;chromosome;8.02848147886101e-17!GO:0006974;response to DNA damage stimulus;1.15718621330159e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.97683832616636e-16!GO:0017111;nucleoside-triphosphatase activity;2.37779855682331e-16!GO:0022403;cell cycle phase;2.55012925528444e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.72081876270143e-16!GO:0044427;chromosomal part;2.97346797787403e-16!GO:0016070;RNA metabolic process;5.66426671755841e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.62512632389593e-16!GO:0003954;NADH dehydrogenase activity;7.62512632389593e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.62512632389593e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.06777487309933e-15!GO:0007067;mitosis;2.81800855634696e-15!GO:0000087;M phase of mitotic cell cycle;3.1217891783962e-15!GO:0022618;protein-RNA complex assembly;8.45853746550436e-15!GO:0051276;chromosome organization and biogenesis;9.32088777307548e-15!GO:0006605;protein targeting;2.06028085490384e-14!GO:0006732;coenzyme metabolic process;2.53990991004777e-14!GO:0000502;proteasome complex (sensu Eukaryota);2.56262257825835e-14!GO:0006512;ubiquitin cycle;2.88568156211008e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.27849181776961e-14!GO:0042773;ATP synthesis coupled electron transport;3.27849181776961e-14!GO:0006281;DNA repair;3.69984218774412e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.68428250275875e-14!GO:0045271;respiratory chain complex I;4.68428250275875e-14!GO:0005747;mitochondrial respiratory chain complex I;4.68428250275875e-14!GO:0008134;transcription factor binding;5.33149171786638e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.51522715270379e-14!GO:0044265;cellular macromolecule catabolic process;7.93886553021466e-14!GO:0051082;unfolded protein binding;1.25286610172728e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.32597674056872e-13!GO:0005794;Golgi apparatus;1.7204173506881e-13!GO:0006260;DNA replication;2.05879017816763e-13!GO:0008135;translation factor activity, nucleic acid binding;4.36935385178652e-13!GO:0044248;cellular catabolic process;4.49897762081687e-13!GO:0009719;response to endogenous stimulus;4.67011547063927e-13!GO:0043285;biopolymer catabolic process;6.03842379456021e-13!GO:0042254;ribosome biogenesis and assembly;6.58653162143338e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;7.85856437937646e-13!GO:0000279;M phase;8.27197928978752e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.11587619330665e-12!GO:0000375;RNA splicing, via transesterification reactions;1.11587619330665e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.11587619330665e-12!GO:0017076;purine nucleotide binding;1.35323358526851e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.52236574498951e-12!GO:0032553;ribonucleotide binding;1.57293901999175e-12!GO:0032555;purine ribonucleotide binding;1.57293901999175e-12!GO:0051301;cell division;1.59905578407785e-12!GO:0009057;macromolecule catabolic process;1.6325296373061e-12!GO:0005789;endoplasmic reticulum membrane;2.53234707582117e-12!GO:0006323;DNA packaging;3.55453177852319e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;3.78138650056997e-12!GO:0019941;modification-dependent protein catabolic process;5.81407529335711e-12!GO:0043632;modification-dependent macromolecule catabolic process;5.81407529335711e-12!GO:0006511;ubiquitin-dependent protein catabolic process;7.22159115206166e-12!GO:0009055;electron carrier activity;8.13343043168729e-12!GO:0044257;cellular protein catabolic process;8.13343043168729e-12!GO:0048193;Golgi vesicle transport;1.06971509537875e-11!GO:0065004;protein-DNA complex assembly;3.23026895452555e-11!GO:0006399;tRNA metabolic process;3.56828626311536e-11!GO:0005524;ATP binding;3.65729504012459e-11!GO:0043412;biopolymer modification;4.30961955871226e-11!GO:0032559;adenyl ribonucleotide binding;7.36213353303009e-11!GO:0005793;ER-Golgi intermediate compartment;7.60207662133398e-11!GO:0030554;adenyl nucleotide binding;8.87350312734459e-11!GO:0005635;nuclear envelope;1.14132679106477e-10!GO:0030163;protein catabolic process;1.44206063340665e-10!GO:0006913;nucleocytoplasmic transport;1.9111465121666e-10!GO:0012501;programmed cell death;2.16140185662078e-10!GO:0000785;chromatin;2.29856603864936e-10!GO:0006333;chromatin assembly or disassembly;2.33408065464001e-10!GO:0003743;translation initiation factor activity;3.20831933259072e-10!GO:0006915;apoptosis;3.69132743794858e-10!GO:0009259;ribonucleotide metabolic process;3.84422050850397e-10!GO:0051169;nuclear transport;4.1812250009418e-10!GO:0051726;regulation of cell cycle;4.41277848365662e-10!GO:0000074;regulation of progression through cell cycle;4.96107798702653e-10!GO:0006163;purine nucleotide metabolic process;5.96072948102945e-10!GO:0016604;nuclear body;6.4303910138427e-10!GO:0031965;nuclear membrane;7.47559036791553e-10!GO:0006334;nucleosome assembly;9.66014812437067e-10!GO:0044453;nuclear membrane part;9.8572974707318e-10!GO:0006464;protein modification process;1.19887111649279e-09!GO:0051188;cofactor biosynthetic process;1.48590823682055e-09!GO:0009150;purine ribonucleotide metabolic process;1.72913605934781e-09!GO:0031497;chromatin assembly;2.69152041968313e-09!GO:0016192;vesicle-mediated transport;2.85147012496919e-09!GO:0003712;transcription cofactor activity;2.89108634657125e-09!GO:0008219;cell death;3.34618220209351e-09!GO:0016265;death;3.34618220209351e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.79593055054732e-09!GO:0006413;translational initiation;3.9032014724769e-09!GO:0006164;purine nucleotide biosynthetic process;4.57431813738205e-09!GO:0006364;rRNA processing;4.69920068474457e-09!GO:0065002;intracellular protein transport across a membrane;5.23866054443688e-09!GO:0009260;ribonucleotide biosynthetic process;6.92938225498156e-09!GO:0006461;protein complex assembly;8.21893549707868e-09!GO:0017038;protein import;8.29421716533847e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.38873686509986e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.00398850280962e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.01824067036169e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.01824067036169e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.01824067036169e-08!GO:0009141;nucleoside triphosphate metabolic process;1.12166050641769e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.29675154952879e-08!GO:0042623;ATPase activity, coupled;1.35362867172085e-08!GO:0009060;aerobic respiration;1.38637374672622e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.39827964855919e-08!GO:0015630;microtubule cytoskeleton;1.39827964855919e-08!GO:0016072;rRNA metabolic process;1.40491129148611e-08!GO:0016491;oxidoreductase activity;1.5317411408866e-08!GO:0008565;protein transporter activity;1.579832030054e-08!GO:0008639;small protein conjugating enzyme activity;2.35244881336213e-08!GO:0007005;mitochondrion organization and biogenesis;2.3788004189258e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.9788594077796e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.9788594077796e-08!GO:0043038;amino acid activation;2.9788594077796e-08!GO:0006418;tRNA aminoacylation for protein translation;2.9788594077796e-08!GO:0043039;tRNA aminoacylation;2.9788594077796e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.25453444512324e-08!GO:0016887;ATPase activity;3.27426240601922e-08!GO:0006446;regulation of translational initiation;3.8028317426196e-08!GO:0005643;nuclear pore;4.16608358363586e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.47158079632717e-08!GO:0043687;post-translational protein modification;4.84378705566768e-08!GO:0004842;ubiquitin-protein ligase activity;4.99811486755902e-08!GO:0045333;cellular respiration;7.02670627571505e-08!GO:0016740;transferase activity;8.13826240436085e-08!GO:0019787;small conjugating protein ligase activity;1.0366718534373e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.41925027260511e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.41925027260511e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.46081422679453e-07!GO:0009056;catabolic process;1.46955533399066e-07!GO:0048475;coated membrane;1.52927718120929e-07!GO:0030117;membrane coat;1.52927718120929e-07!GO:0030120;vesicle coat;1.70526418012327e-07!GO:0030662;coated vesicle membrane;1.70526418012327e-07!GO:0008654;phospholipid biosynthetic process;1.74920666971475e-07!GO:0005788;endoplasmic reticulum lumen;1.82814665335198e-07!GO:0009117;nucleotide metabolic process;1.96502518013308e-07!GO:0016607;nuclear speck;2.07270426990638e-07!GO:0016779;nucleotidyltransferase activity;2.58055728089376e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.79505323261568e-07!GO:0048523;negative regulation of cellular process;2.86347870385949e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.00466368999158e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.00466368999158e-07!GO:0015986;ATP synthesis coupled proton transport;3.25573529114562e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.25573529114562e-07!GO:0006366;transcription from RNA polymerase II promoter;3.6323473439561e-07!GO:0016881;acid-amino acid ligase activity;3.75857877757972e-07!GO:0009108;coenzyme biosynthetic process;4.24533105455017e-07!GO:0051329;interphase of mitotic cell cycle;4.26538782612072e-07!GO:0046034;ATP metabolic process;4.44242663684307e-07!GO:0006099;tricarboxylic acid cycle;4.62185384950962e-07!GO:0046356;acetyl-CoA catabolic process;4.62185384950962e-07!GO:0006091;generation of precursor metabolites and energy;4.63603768980608e-07!GO:0004386;helicase activity;4.77872005990147e-07!GO:0003697;single-stranded DNA binding;4.977799513088e-07!GO:0046930;pore complex;5.11562710226066e-07!GO:0005768;endosome;5.68684280330032e-07!GO:0042981;regulation of apoptosis;6.73703997346766e-07!GO:0050794;regulation of cellular process;6.85080406234354e-07!GO:0051325;interphase;7.33809374963016e-07!GO:0043067;regulation of programmed cell death;8.80408570317905e-07!GO:0016568;chromatin modification;8.95843052520116e-07!GO:0008026;ATP-dependent helicase activity;9.25216577751251e-07!GO:0006084;acetyl-CoA metabolic process;1.04386673273911e-06!GO:0016853;isomerase activity;1.05349124027806e-06!GO:0005762;mitochondrial large ribosomal subunit;1.21814751490747e-06!GO:0000315;organellar large ribosomal subunit;1.21814751490747e-06!GO:0051187;cofactor catabolic process;1.24788735312498e-06!GO:0044431;Golgi apparatus part;1.36912620786709e-06!GO:0050657;nucleic acid transport;1.56168435668281e-06!GO:0051236;establishment of RNA localization;1.56168435668281e-06!GO:0050658;RNA transport;1.56168435668281e-06!GO:0019829;cation-transporting ATPase activity;1.56896887241095e-06!GO:0006403;RNA localization;1.64203319712544e-06!GO:0009109;coenzyme catabolic process;1.84161965124128e-06!GO:0051246;regulation of protein metabolic process;2.18444146794316e-06!GO:0045259;proton-transporting ATP synthase complex;2.48017840589534e-06!GO:0044440;endosomal part;2.50537028058833e-06!GO:0010008;endosome membrane;2.50537028058833e-06!GO:0005813;centrosome;2.53398108607238e-06!GO:0043566;structure-specific DNA binding;2.8345654952618e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.8345654952618e-06!GO:0005770;late endosome;3.89428273240803e-06!GO:0003924;GTPase activity;4.22014589720481e-06!GO:0006754;ATP biosynthetic process;4.30107983609213e-06!GO:0006753;nucleoside phosphate metabolic process;4.30107983609213e-06!GO:0005819;spindle;4.54745383369496e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.75799338346759e-06!GO:0031324;negative regulation of cellular metabolic process;6.32603639895013e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.02818386348298e-06!GO:0048519;negative regulation of biological process;7.30989346709113e-06!GO:0005667;transcription factor complex;7.66138999132367e-06!GO:0051170;nuclear import;7.74313127460694e-06!GO:0005815;microtubule organizing center;8.01273174328576e-06!GO:0006752;group transfer coenzyme metabolic process;8.56567754909188e-06!GO:0045454;cell redox homeostasis;9.14856926444424e-06!GO:0032446;protein modification by small protein conjugation;9.14856926444424e-06!GO:0019843;rRNA binding;9.51483738586046e-06!GO:0046474;glycerophospholipid biosynthetic process;1.03212992107984e-05!GO:0003899;DNA-directed RNA polymerase activity;1.18609591892795e-05!GO:0016567;protein ubiquitination;1.29261892427428e-05!GO:0006606;protein import into nucleus;1.54820313829591e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.81928330782615e-05!GO:0000245;spliceosome assembly;1.82407488739891e-05!GO:0015980;energy derivation by oxidation of organic compounds;1.8287938025552e-05!GO:0008610;lipid biosynthetic process;1.95244056678275e-05!GO:0016563;transcription activator activity;1.97000201375532e-05!GO:0004298;threonine endopeptidase activity;2.06704910021958e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.09632772331776e-05!GO:0016859;cis-trans isomerase activity;2.13234427422418e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.19481253088877e-05!GO:0006916;anti-apoptosis;2.21530016838641e-05!GO:0005773;vacuole;2.72430869184073e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.76729083339581e-05!GO:0000314;organellar small ribosomal subunit;2.8907203880474e-05!GO:0005763;mitochondrial small ribosomal subunit;2.8907203880474e-05!GO:0008361;regulation of cell size;2.95472617676973e-05!GO:0016049;cell growth;2.98101702583098e-05!GO:0016126;sterol biosynthetic process;3.2909259495488e-05!GO:0000786;nucleosome;3.43609552180904e-05!GO:0000139;Golgi membrane;3.57169167681366e-05!GO:0051028;mRNA transport;3.71037452327491e-05!GO:0000775;chromosome, pericentric region;4.27637030829731e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.27730865421227e-05!GO:0005798;Golgi-associated vesicle;4.45013430537279e-05!GO:0006261;DNA-dependent DNA replication;4.45013430537279e-05!GO:0030867;rough endoplasmic reticulum membrane;4.77015154097804e-05!GO:0016564;transcription repressor activity;4.90426633405118e-05!GO:0043069;negative regulation of programmed cell death;5.00054060403837e-05!GO:0030133;transport vesicle;5.09278111529145e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.29459395486855e-05!GO:0009892;negative regulation of metabolic process;5.92172312056474e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.15547326700629e-05!GO:0031252;leading edge;6.29817414252083e-05!GO:0019867;outer membrane;6.33580895988001e-05!GO:0043066;negative regulation of apoptosis;6.33580895988001e-05!GO:0016787;hydrolase activity;6.66564255695572e-05!GO:0019899;enzyme binding;7.04750253848812e-05!GO:0000151;ubiquitin ligase complex;7.35694736832028e-05!GO:0003714;transcription corepressor activity;7.5540868126245e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.55604615677255e-05!GO:0051427;hormone receptor binding;7.69112820173893e-05!GO:0016023;cytoplasmic membrane-bound vesicle;7.85653084446836e-05!GO:0031968;organelle outer membrane;7.9430377466604e-05!GO:0043623;cellular protein complex assembly;8.03531351948905e-05!GO:0005905;coated pit;8.78610752533435e-05!GO:0005657;replication fork;9.02182235565427e-05!GO:0006626;protein targeting to mitochondrion;9.68394150756687e-05!GO:0045786;negative regulation of progression through cell cycle;9.76324996199675e-05!GO:0033116;ER-Golgi intermediate compartment membrane;0.000107341740981234!GO:0050789;regulation of biological process;0.000108113765445629!GO:0000323;lytic vacuole;0.000112268670070533!GO:0005764;lysosome;0.000112268670070533!GO:0043681;protein import into mitochondrion;0.000124932114321419!GO:0031988;membrane-bound vesicle;0.000125413227118043!GO:0044262;cellular carbohydrate metabolic process;0.000126170731136646!GO:0001558;regulation of cell growth;0.000127022750726427!GO:0003713;transcription coactivator activity;0.000129379118455335!GO:0006613;cotranslational protein targeting to membrane;0.000131395032394396!GO:0035257;nuclear hormone receptor binding;0.000159488874777868!GO:0006793;phosphorus metabolic process;0.000164164930096429!GO:0006796;phosphate metabolic process;0.000164164930096429!GO:0005741;mitochondrial outer membrane;0.000167587579136641!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000189478297894666!GO:0000075;cell cycle checkpoint;0.000217063879600477!GO:0046467;membrane lipid biosynthetic process;0.000227629252254711!GO:0005048;signal sequence binding;0.000240347526646993!GO:0008033;tRNA processing;0.000244505443273864!GO:0006839;mitochondrial transport;0.000246656885469281!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000257030462652531!GO:0046489;phosphoinositide biosynthetic process;0.000271632479141991!GO:0007051;spindle organization and biogenesis;0.000274147473204987!GO:0003724;RNA helicase activity;0.000282772161462979!GO:0006695;cholesterol biosynthetic process;0.00028583935729742!GO:0031410;cytoplasmic vesicle;0.000286930829310214!GO:0016481;negative regulation of transcription;0.000289611495516018!GO:0008094;DNA-dependent ATPase activity;0.000299805054236842!GO:0031982;vesicle;0.000328552499904999!GO:0008250;oligosaccharyl transferase complex;0.000372885036620805!GO:0043021;ribonucleoprotein binding;0.000388909115909186!GO:0007006;mitochondrial membrane organization and biogenesis;0.000394351995542608!GO:0009165;nucleotide biosynthetic process;0.000396759167596852!GO:0030176;integral to endoplasmic reticulum membrane;0.000451341021837917!GO:0007010;cytoskeleton organization and biogenesis;0.000496365951383583!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000510397593437927!GO:0051789;response to protein stimulus;0.00051102043203503!GO:0006986;response to unfolded protein;0.00051102043203503!GO:0019222;regulation of metabolic process;0.000544915271568199!GO:0005791;rough endoplasmic reticulum;0.000578305826618722!GO:0016741;transferase activity, transferring one-carbon groups;0.000655087706742232!GO:0051168;nuclear export;0.000751731201019307!GO:0008168;methyltransferase activity;0.000759471495272762!GO:0005769;early endosome;0.00079186650076901!GO:0043284;biopolymer biosynthetic process;0.00079186650076901!GO:0031902;late endosome membrane;0.000800615677306952!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000817369761152387!GO:0005525;GTP binding;0.000817369761152387!GO:0005885;Arp2/3 protein complex;0.000824088971104772!GO:0051920;peroxiredoxin activity;0.000826377210197272!GO:0016310;phosphorylation;0.000842091862186689!GO:0018196;peptidyl-asparagine modification;0.00089146009045414!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00089146009045414!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000997964248327812!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00100781562329534!GO:0006414;translational elongation;0.00105940424462134!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00112355089886676!GO:0030118;clathrin coat;0.00119577627078489!GO:0005684;U2-dependent spliceosome;0.00122378090493863!GO:0006082;organic acid metabolic process;0.00123441781084971!GO:0005874;microtubule;0.00126405252266967!GO:0003684;damaged DNA binding;0.00127831871158903!GO:0019752;carboxylic acid metabolic process;0.00129238800117355!GO:0042802;identical protein binding;0.00144960523264266!GO:0044452;nucleolar part;0.00147480674647243!GO:0043488;regulation of mRNA stability;0.00170459941623581!GO:0043487;regulation of RNA stability;0.00170459941623581!GO:0005774;vacuolar membrane;0.00172274462562445!GO:0051087;chaperone binding;0.00181231992325742!GO:0032508;DNA duplex unwinding;0.00191445053633387!GO:0032392;DNA geometric change;0.00191445053633387!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00194954106922667!GO:0008186;RNA-dependent ATPase activity;0.00204471280857831!GO:0031072;heat shock protein binding;0.00205894822062328!GO:0046483;heterocycle metabolic process;0.0021094108703279!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00211480764470395!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00211480764470395!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00211480764470395!GO:0004576;oligosaccharyl transferase activity;0.00211486587161811!GO:0030036;actin cytoskeleton organization and biogenesis;0.00218613669830605!GO:0003682;chromatin binding;0.00227099721453637!GO:0065009;regulation of a molecular function;0.0022996311712701!GO:0000082;G1/S transition of mitotic cell cycle;0.00231788153497997!GO:0006383;transcription from RNA polymerase III promoter;0.00232183903510464!GO:0030132;clathrin coat of coated pit;0.00239395750147635!GO:0016363;nuclear matrix;0.00240215574397963!GO:0048522;positive regulation of cellular process;0.00240215574397963!GO:0030658;transport vesicle membrane;0.00245915241894168!GO:0007088;regulation of mitosis;0.00250327510930094!GO:0006595;polyamine metabolic process;0.00250327510930094!GO:0003678;DNA helicase activity;0.00259756234207168!GO:0030663;COPI coated vesicle membrane;0.00268204915124158!GO:0030126;COPI vesicle coat;0.00268204915124158!GO:0006778;porphyrin metabolic process;0.00268442021954173!GO:0033013;tetrapyrrole metabolic process;0.00268442021954173!GO:0040008;regulation of growth;0.0026939371144123!GO:0006979;response to oxidative stress;0.00273716238640458!GO:0030880;RNA polymerase complex;0.00292915565650366!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00295732040601425!GO:0050662;coenzyme binding;0.00309382793532568!GO:0006650;glycerophospholipid metabolic process;0.0031249084204921!GO:0006268;DNA unwinding during replication;0.00317718897451303!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00323456957423192!GO:0006612;protein targeting to membrane;0.003287128238958!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0033189502102021!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0033189502102021!GO:0006402;mRNA catabolic process;0.00339561460500636!GO:0006506;GPI anchor biosynthetic process;0.003487924842773!GO:0015631;tubulin binding;0.00365842597164821!GO:0042158;lipoprotein biosynthetic process;0.00389593000662594!GO:0032561;guanyl ribonucleotide binding;0.00389593000662594!GO:0019001;guanyl nucleotide binding;0.00389593000662594!GO:0006220;pyrimidine nucleotide metabolic process;0.00396467896210458!GO:0030137;COPI-coated vesicle;0.00398655459073526!GO:0006497;protein amino acid lipidation;0.00400931350714927!GO:0051252;regulation of RNA metabolic process;0.004009430241188!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.004009430241188!GO:0015002;heme-copper terminal oxidase activity;0.004009430241188!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.004009430241188!GO:0004129;cytochrome-c oxidase activity;0.004009430241188!GO:0048471;perinuclear region of cytoplasm;0.00416483892464217!GO:0006740;NADPH regeneration;0.00465768882876347!GO:0006098;pentose-phosphate shunt;0.00465768882876347!GO:0044437;vacuolar part;0.00468290128502722!GO:0030134;ER to Golgi transport vesicle;0.00468887748852601!GO:0004004;ATP-dependent RNA helicase activity;0.00473571284915189!GO:0005765;lysosomal membrane;0.00483282450350444!GO:0006779;porphyrin biosynthetic process;0.00490735646469567!GO:0033014;tetrapyrrole biosynthetic process;0.00490735646469567!GO:0000059;protein import into nucleus, docking;0.00501524064933632!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00516451596658924!GO:0017166;vinculin binding;0.00524881135060798!GO:0006505;GPI anchor metabolic process;0.00544688146610082!GO:0005758;mitochondrial intermembrane space;0.0055128132011527!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00575079763009399!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00578732387869567!GO:0008632;apoptotic program;0.00601743906830136!GO:0007346;regulation of progression through mitotic cell cycle;0.00606762060465615!GO:0030119;AP-type membrane coat adaptor complex;0.00620353966347567!GO:0016272;prefoldin complex;0.00625805058894713!GO:0006310;DNA recombination;0.00639289332576798!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00650422400822525!GO:0006352;transcription initiation;0.00650422400822525!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00662125250114518!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00669549581208446!GO:0000428;DNA-directed RNA polymerase complex;0.00669549581208446!GO:0015992;proton transport;0.00669549581208446!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00677385269138847!GO:0030660;Golgi-associated vesicle membrane;0.00684470449300148!GO:0003729;mRNA binding;0.00692976629694472!GO:0042168;heme metabolic process;0.00697303945592816!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00713408339366683!GO:0006302;double-strand break repair;0.00724257339485378!GO:0045792;negative regulation of cell size;0.00743163959484296!GO:0048487;beta-tubulin binding;0.00743163959484296!GO:0051539;4 iron, 4 sulfur cluster binding;0.00749747102564836!GO:0006818;hydrogen transport;0.00750950291282399!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0075331949088571!GO:0006520;amino acid metabolic process;0.00753910250833852!GO:0040029;regulation of gene expression, epigenetic;0.00768527740153561!GO:0009112;nucleobase metabolic process;0.00773179492186324!GO:0008139;nuclear localization sequence binding;0.00777866005071825!GO:0000910;cytokinesis;0.0077999431758177!GO:0000049;tRNA binding;0.00784958565477045!GO:0004518;nuclease activity;0.00804209619956941!GO:0004527;exonuclease activity;0.00819322752519086!GO:0051540;metal cluster binding;0.00819322752519086!GO:0051536;iron-sulfur cluster binding;0.00819322752519086!GO:0006401;RNA catabolic process;0.00823284717970371!GO:0030308;negative regulation of cell growth;0.00849349351559386!GO:0006118;electron transport;0.00897983679655047!GO:0031970;organelle envelope lumen;0.00910471177599099!GO:0007243;protein kinase cascade;0.00915557369968549!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00920053537839037!GO:0007050;cell cycle arrest;0.00927554371015814!GO:0009116;nucleoside metabolic process;0.00929623756054652!GO:0030127;COPII vesicle coat;0.00983931085257005!GO:0012507;ER to Golgi transport vesicle membrane;0.00983931085257005!GO:0019206;nucleoside kinase activity;0.00987633519748331!GO:0030131;clathrin adaptor complex;0.00988290060854142!GO:0051287;NAD binding;0.00995035248062142!GO:0048037;cofactor binding;0.0100117500775916!GO:0016044;membrane organization and biogenesis;0.0100565633249019!GO:0051052;regulation of DNA metabolic process;0.0102408917919134!GO:0051348;negative regulation of transferase activity;0.0102436340709005!GO:0033673;negative regulation of kinase activity;0.0105441193381728!GO:0006469;negative regulation of protein kinase activity;0.0105441193381728!GO:0008092;cytoskeletal protein binding;0.0105911522048419!GO:0043414;biopolymer methylation;0.0107485281400362!GO:0006405;RNA export from nucleus;0.011081015885226!GO:0031124;mRNA 3'-end processing;0.0114635417434512!GO:0030029;actin filament-based process;0.0114713840163131!GO:0000096;sulfur amino acid metabolic process;0.0116681806715262!GO:0051101;regulation of DNA binding;0.0116681806715262!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0116681806715262!GO:0015399;primary active transmembrane transporter activity;0.0116681806715262!GO:0030125;clathrin vesicle coat;0.0117529550193423!GO:0030665;clathrin coated vesicle membrane;0.0117529550193423!GO:0000209;protein polyubiquitination;0.0119918208763958!GO:0006289;nucleotide-excision repair;0.0120628349292632!GO:0006783;heme biosynthetic process;0.012568231555161!GO:0015036;disulfide oxidoreductase activity;0.0126320169685955!GO:0035258;steroid hormone receptor binding;0.0128121080825663!GO:0006891;intra-Golgi vesicle-mediated transport;0.0128173646676603!GO:0030027;lamellipodium;0.0128549664598631!GO:0016125;sterol metabolic process;0.0129239386233911!GO:0007093;mitotic cell cycle checkpoint;0.0129335712028479!GO:0048500;signal recognition particle;0.0129431073630868!GO:0022890;inorganic cation transmembrane transporter activity;0.0130818769392586!GO:0043433;negative regulation of transcription factor activity;0.0134428736591302!GO:0030145;manganese ion binding;0.0139461220277011!GO:0003711;transcription elongation regulator activity;0.0140782812900834!GO:0006611;protein export from nucleus;0.0141869397813814!GO:0048468;cell development;0.0144523735751907!GO:0051098;regulation of binding;0.0149415658353238!GO:0006007;glucose catabolic process;0.0149415658353238!GO:0005862;muscle thin filament tropomyosin;0.0155941524573657!GO:0032259;methylation;0.0157846272256302!GO:0045892;negative regulation of transcription, DNA-dependent;0.0158656981833405!GO:0000776;kinetochore;0.0160745391741121!GO:0006739;NADP metabolic process;0.0166547920489541!GO:0008312;7S RNA binding;0.0166914966669371!GO:0043065;positive regulation of apoptosis;0.0173194263224891!GO:0019798;procollagen-proline dioxygenase activity;0.0174436713751902!GO:0043596;nuclear replication fork;0.0175384172570291!GO:0030384;phosphoinositide metabolic process;0.017555757393009!GO:0006509;membrane protein ectodomain proteolysis;0.0176683562434849!GO:0033619;membrane protein proteolysis;0.0176683562434849!GO:0005869;dynactin complex;0.0179806507496711!GO:0006733;oxidoreduction coenzyme metabolic process;0.0180329443269163!GO:0031543;peptidyl-proline dioxygenase activity;0.0182212619936033!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0183744938467139!GO:0008652;amino acid biosynthetic process;0.0186361422810302!GO:0000228;nuclear chromosome;0.0189049402367488!GO:0006275;regulation of DNA replication;0.018925788320073!GO:0000287;magnesium ion binding;0.018925788320073!GO:0007021;tubulin folding;0.0190280002623372!GO:0045941;positive regulation of transcription;0.0191496117983945!GO:0008286;insulin receptor signaling pathway;0.0191712684514513!GO:0016860;intramolecular oxidoreductase activity;0.0193206330968267!GO:0030508;thiol-disulfide exchange intermediate activity;0.0193206330968267!GO:0031529;ruffle organization and biogenesis;0.0199606662043434!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.020024615328478!GO:0033559;unsaturated fatty acid metabolic process;0.020170679034445!GO:0006636;unsaturated fatty acid biosynthetic process;0.020170679034445!GO:0031323;regulation of cellular metabolic process;0.0202987456477408!GO:0006790;sulfur metabolic process;0.0203311347412536!GO:0030521;androgen receptor signaling pathway;0.0204438064444559!GO:0009303;rRNA transcription;0.0204438064444559!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0207195814111354!GO:0008629;induction of apoptosis by intracellular signals;0.0209174640474427!GO:0006066;alcohol metabolic process;0.0209174640474427!GO:0043068;positive regulation of programmed cell death;0.0210237897551003!GO:0005832;chaperonin-containing T-complex;0.0212940420197854!GO:0030433;ER-associated protein catabolic process;0.0213809489329659!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0213809489329659!GO:0043022;ribosome binding;0.0215417572382762!GO:0005637;nuclear inner membrane;0.0223219003388103!GO:0000084;S phase of mitotic cell cycle;0.0224326704561003!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0225560233899817!GO:0065007;biological regulation;0.0226163843800429!GO:0003690;double-stranded DNA binding;0.0226713860661975!GO:0006950;response to stress;0.0229055438309924!GO:0004003;ATP-dependent DNA helicase activity;0.0231244883807554!GO:0006730;one-carbon compound metabolic process;0.0245659583286898!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0245659583286898!GO:0010257;NADH dehydrogenase complex assembly;0.0245659583286898!GO:0033108;mitochondrial respiratory chain complex assembly;0.0245659583286898!GO:0007040;lysosome organization and biogenesis;0.0246259662823346!GO:0007264;small GTPase mediated signal transduction;0.0246564307926668!GO:0001726;ruffle;0.0249717887676936!GO:0005996;monosaccharide metabolic process;0.0251707341948841!GO:0008180;signalosome;0.025229327063269!GO:0006643;membrane lipid metabolic process;0.0259336242165724!GO:0003746;translation elongation factor activity;0.0259942531599302!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.026127901771628!GO:0045039;protein import into mitochondrial inner membrane;0.026127901771628!GO:0019318;hexose metabolic process;0.0263531147386291!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0264049705280986!GO:0045047;protein targeting to ER;0.0264049705280986!GO:0008538;proteasome activator activity;0.0267002228262189!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0267111100651411!GO:0006284;base-excision repair;0.0269204724177119!GO:0000792;heterochromatin;0.0272177973846164!GO:0043189;H4/H2A histone acetyltransferase complex;0.027419952398832!GO:0008637;apoptotic mitochondrial changes;0.0274597109671081!GO:0007059;chromosome segregation;0.0276062180701243!GO:0005876;spindle microtubule;0.0278705580389311!GO:0007033;vacuole organization and biogenesis;0.0279133250532244!GO:0000339;RNA cap binding;0.028109377107975!GO:0006338;chromatin remodeling;0.0282001046647743!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.028344662017313!GO:0006644;phospholipid metabolic process;0.0284271034465711!GO:0016408;C-acyltransferase activity;0.0287877239724851!GO:0007052;mitotic spindle organization and biogenesis;0.0288975724047096!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0299647507356555!GO:0003756;protein disulfide isomerase activity;0.0302074969565617!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0302074969565617!GO:0045926;negative regulation of growth;0.0302074969565617!GO:0042393;histone binding;0.0302316147713177!GO:0005881;cytoplasmic microtubule;0.0306518341068729!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0316188026682116!GO:0030659;cytoplasmic vesicle membrane;0.0319576677343859!GO:0045893;positive regulation of transcription, DNA-dependent;0.0322368999112724!GO:0003923;GPI-anchor transamidase activity;0.0324194865757854!GO:0016255;attachment of GPI anchor to protein;0.0324194865757854!GO:0042765;GPI-anchor transamidase complex;0.0324194865757854!GO:0006807;nitrogen compound metabolic process;0.0324194865757854!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0328397234490668!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0328397234490668!GO:0000178;exosome (RNase complex);0.0328594605450379!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0333249015450122!GO:0046966;thyroid hormone receptor binding;0.0333941315846927!GO:0006350;transcription;0.0333941315846927!GO:0035267;NuA4 histone acetyltransferase complex;0.0334979762526072!GO:0009451;RNA modification;0.0335576134430756!GO:0006378;mRNA polyadenylation;0.034018037834891!GO:0044454;nuclear chromosome part;0.0340322561261415!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0340913497580113!GO:0030041;actin filament polymerization;0.0346287442456394!GO:0045936;negative regulation of phosphate metabolic process;0.0349345239694894!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0355139295241814!GO:0006144;purine base metabolic process;0.0356954047083398!GO:0031301;integral to organelle membrane;0.0357956051068476!GO:0050790;regulation of catalytic activity;0.0359594489953408!GO:0035035;histone acetyltransferase binding;0.0359756408534304!GO:0007017;microtubule-based process;0.0362428987900583!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0371145840794083!GO:0046822;regulation of nucleocytoplasmic transport;0.0377231682095114!GO:0031625;ubiquitin protein ligase binding;0.0378159700054264!GO:0031371;ubiquitin conjugating enzyme complex;0.0378159700054264!GO:0016584;nucleosome positioning;0.0378644053959391!GO:0008213;protein amino acid alkylation;0.0380346795722735!GO:0006479;protein amino acid methylation;0.0380346795722735!GO:0030911;TPR domain binding;0.0383773322324539!GO:0031272;regulation of pseudopodium formation;0.0383773322324539!GO:0031269;pseudopodium formation;0.0383773322324539!GO:0031344;regulation of cell projection organization and biogenesis;0.0383773322324539!GO:0031268;pseudopodium organization and biogenesis;0.0383773322324539!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0383773322324539!GO:0031274;positive regulation of pseudopodium formation;0.0383773322324539!GO:0009262;deoxyribonucleotide metabolic process;0.0398057606985753!GO:0009124;nucleoside monophosphate biosynthetic process;0.0402721149351453!GO:0009123;nucleoside monophosphate metabolic process;0.0402721149351453!GO:0000922;spindle pole;0.0405308109483035!GO:0004448;isocitrate dehydrogenase activity;0.0408608408614957!GO:0006458;'de novo' protein folding;0.0417245965765914!GO:0051084;'de novo' posttranslational protein folding;0.0417245965765914!GO:0000123;histone acetyltransferase complex;0.0418972281878968!GO:0009119;ribonucleoside metabolic process;0.0420294663241115!GO:0006596;polyamine biosynthetic process;0.0421587889089195!GO:0032984;macromolecular complex disassembly;0.0422400774552613!GO:0031418;L-ascorbic acid binding;0.0422872999032416!GO:0000030;mannosyltransferase activity;0.042814686481258!GO:0051320;S phase;0.042826983402681!GO:0048144;fibroblast proliferation;0.042826983402681!GO:0048145;regulation of fibroblast proliferation;0.042826983402681!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.042826983402681!GO:0008022;protein C-terminus binding;0.0430684534962341!GO:0006221;pyrimidine nucleotide biosynthetic process;0.044253947755311!GO:0006354;RNA elongation;0.0454187026425123!GO:0007034;vacuolar transport;0.0454615181477083!GO:0048518;positive regulation of biological process;0.0456140268693777!GO:0051128;regulation of cellular component organization and biogenesis;0.0459511771608573!GO:0005680;anaphase-promoting complex;0.0484562173562775!GO:0051775;response to redox state;0.0488664479571969!GO:0006980;redox signal response;0.0488664479571969!GO:0008287;protein serine/threonine phosphatase complex;0.0488664479571969!GO:0009308;amine metabolic process;0.0488664479571969!GO:0046426;negative regulation of JAK-STAT cascade;0.0490306861992114!GO:0046519;sphingoid metabolic process;0.0490441925682359!GO:0046128;purine ribonucleoside metabolic process;0.0492329947325968!GO:0042278;purine nucleoside metabolic process;0.0492329947325968!GO:0043624;cellular protein complex disassembly;0.0498338484723325
|sample_id=11536
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=bone marrow
|top_motifs=HOX{A5,B5}:1.43077586755;GTF2A1,2:1.37732704542;GFI1:1.14514534438;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.10846462913;PDX1:1.08831681236;GZF1:1.07760054782;EBF1:1.05793421713;HES1:1.03506954799;ZNF238:1.01923231994;RXR{A,B,G}:1.00228689837;NFY{A,B,C}:0.845706202685;ATF6:0.839967795214;IKZF1:0.81998684714;EN1,2:0.747317659181;GFI1B:0.738027997891;GLI1..3:0.737675358977;E2F1..5:0.679425428186;PBX1:0.676533423938;NFE2L1:0.638827003879;LHX3,4:0.63124901192;PAX8:0.630656299008;NR3C1:0.589710604587;ESR1:0.558496841907;LEF1_TCF7_TCF7L1,2:0.549270274999;POU2F1..3:0.476311943967;KLF4:0.455754076586;ZNF148:0.44126158007;STAT5{A,B}:0.435617050448;TFAP4:0.432047730301;SOX17:0.430409209313;ZIC1..3:0.425335192695;ZNF423:0.423280950605;TFCP2:0.420911078922;NR5A1,2:0.416916832293;SRF:0.41470343856;CDC5L:0.412256665988;NR1H4:0.40597934365;XCPE1{core}:0.399168891631;RXRA_VDR{dimer}:0.386698279063;ZNF143:0.370471020499;HOX{A6,A7,B6,B7}:0.353386875375;TP53:0.349085170671;NKX2-3_NKX2-5:0.337574018173;TEAD1:0.333258217027;ZBTB6:0.330929944517;HBP1_HMGB_SSRP1_UBTF:0.309196296996;RREB1:0.307198751687;TAL1_TCF{3,4,12}:0.300713944981;FOXD3:0.283192386739;TLX1..3_NFIC{dimer}:0.280204649194;PAX5:0.279659260813;NR6A1:0.278329625909;CRX:0.273247302875;NFE2L2:0.271771579658;FOXL1:0.265509566534;MYB:0.259346103085;SOX{8,9,10}:0.248744074811;ESRRA:0.220123514711;HAND1,2:0.217964181596;PPARG:0.206270252735;TBP:0.199499840218;SPZ1:0.197704913473;TOPORS:0.197559490485;BACH2:0.170633623871;HNF4A_NR2F1,2:0.166240537269;NKX2-2,8:0.16492628406;ADNP_IRX_SIX_ZHX:0.161748333122;PRRX1,2:0.154858505201;TFDP1:0.150189412197;RUNX1..3:0.133124107997;ELK1,4_GABP{A,B1}:0.127622749724;POU6F1:0.12756836439;NANOG:0.126618753887;POU3F1..4:0.10804417916;YY1:0.0978594554374;HNF1A:0.0919324423848;HIC1:0.0767387165639;ONECUT1,2:0.0625855662439;FOSL2:0.0467821915744;GTF2I:0.0465524494969;UFEwm:0.0317172591623;FOS_FOS{B,L1}_JUN{B,D}:0.0223707294604;NRF1:0.00489335727312;STAT2,4,6:0.000916297210086;SP1:-0.0035105811441;TFAP2{A,C}:-0.00508615577844;NFE2:-0.0114922466967;RFX1:-0.0124985822702;MZF1:-0.0231671606792;HLF:-0.0325037497519;AIRE:-0.0458074353173;ZNF384:-0.0553232333979;FOXA2:-0.0780484948715;PRDM1:-0.100870266154;AR:-0.112168536692;TBX4,5:-0.117621647839;AHR_ARNT_ARNT2:-0.120457393272;bHLH_family:-0.126412307306;MAFB:-0.130485308031;JUN:-0.131310606314;NFATC1..3:-0.133772279904;REST:-0.141873949084;MTF1:-0.143689103904;MEF2{A,B,C,D}:-0.143985015877;NHLH1,2:-0.144575311017;PAX3,7:-0.154533991311;POU5F1:-0.155957678729;ALX4:-0.165561352058;PATZ1:-0.183775467796;HOX{A4,D4}:-0.193414723245;NANOG{mouse}:-0.21588413632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.233158613188;GATA6:-0.23926524461;HSF1,2:-0.241088205639;CEBPA,B_DDIT3:-0.245537771212;DMAP1_NCOR{1,2}_SMARC:-0.247951013806;MTE{core}:-0.248047980705;MYBL2:-0.24839423211;HOXA9_MEIS1:-0.25444224005;RORA:-0.265396658539;NFIX:-0.285789895283;GATA4:-0.285956940464;FOXM1:-0.30961173635;TFAP2B:-0.31146918055;NKX6-1,2:-0.313708584622;BREu{core}:-0.313895719222;NFKB1_REL_RELA:-0.316958706681;POU1F1:-0.344198838664;OCT4_SOX2{dimer}:-0.344831336824;FOX{I1,J2}:-0.34896679774;PAX1,9:-0.355045091576;MAZ:-0.35711637916;EVI1:-0.358863477432;FOXQ1:-0.371496957117;ETS1,2:-0.372638915556;SOX5:-0.379604454459;ARID5B:-0.393440815067;SOX2:-0.393557739442;T:-0.403474227284;NKX3-2:-0.414474226806;RFX2..5_RFXANK_RFXAP:-0.436193084824;NFIL3:-0.442004230472;CUX2:-0.446586631008;XBP1:-0.456118419;ELF1,2,4:-0.461399895837;DBP:-0.472041111923;SPIB:-0.494535510561;TEF:-0.507947982891;STAT1,3:-0.525126840795;SNAI1..3:-0.559287692971;MED-1{core}:-0.561195788757;SPI1:-0.570686135811;EGR1..3:-0.575725902608;TGIF1:-0.590879789142;LMO2:-0.596420857037;PITX1..3:-0.62507181434;VSX1,2:-0.647454459842;MYFfamily:-0.647780246884;CREB1:-0.661425656773;SMAD1..7,9:-0.705031773465;HMX1:-0.754364390618;FOXP3:-0.754983387583;ZFP161:-0.757100960011;EP300:-0.763530732109;ATF5_CREB3:-0.770276377355;HMGA1,2:-0.773500374322;IKZF2:-0.78942486685;GCM1,2:-0.801633499062;IRF1,2:-0.80790969477;CDX1,2,4:-0.817874564622;FOXP1:-0.824694924454;ATF4:-0.834399418017;IRF7:-0.83800417458;MYOD1:-0.839778582183;NKX2-1,4:-0.859281673917;NKX3-1:-0.863052475066;ZEB1:-0.892423307893;PAX4:-0.903037360362;FOX{F1,F2,J1}:-0.904249243955;SREBF1,2:-0.916320584875;HIF1A:-0.919500453369;ALX1:-0.925193890735;PAX2:-0.959868223151;FOXO1,3,4:-0.962821836618;RBPJ:-0.984472541604;BPTF:-1.01345198082;PAX6:-1.10499138356;FOX{D1,D2}:-1.15300839932;ATF2:-1.16736391184;ZBTB16:-1.19615038696;FOXN1:-1.43543367687;TLX2:-1.58817015611
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11536-120A6;search_select_hide=table117:FF:11536-120A6
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:Mesenchymal Stem Cells - bone marrow, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11344
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7505
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004842
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11344 CAGE DRX008351 DRR009223
Accession ID Hg19

Library idBAMCTSS
CNhs11344 DRZ000648 DRZ002033
Accession ID Hg38

Library idBAMCTSS
CNhs11344 DRZ011998 DRZ013383
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004842
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.CAGATC sRNA-Seq DRX037016 DRR041382
Accession ID Hg19

Library idBAMCTSS
SRhi10003.CAGATC DRZ007024


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0916
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.183
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0994
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0994
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0693
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.384
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.131
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.127
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.18
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0348
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.597
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.633
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0994
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0578
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.307
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.223
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.477
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11344

Jaspar motifP-value
MA0002.20.471
MA0003.10.366
MA0004.10.574
MA0006.10.309
MA0007.10.017
MA0009.10.424
MA0014.10.899
MA0017.10.194
MA0018.20.0374
MA0019.10.449
MA0024.10.0107
MA0025.10.0758
MA0027.10.468
MA0028.10.31
MA0029.10.168
MA0030.19.05722e-4
MA0031.12.83655e-4
MA0035.20.84
MA0038.12.42735e-4
MA0039.20.456
MA0040.10.776
MA0041.10.44
MA0042.10.802
MA0043.18.73383e-4
MA0046.10.0805
MA0047.20.0934
MA0048.10.0508
MA0050.11.53536e-9
MA0051.19.1648e-6
MA0052.10.528
MA0055.10.00162
MA0057.10.243
MA0058.10.611
MA0059.10.214
MA0060.15.29872e-12
MA0061.10.882
MA0062.20.598
MA0065.20.135
MA0066.10.116
MA0067.10.00577
MA0068.10.425
MA0069.10.0869
MA0070.10.0145
MA0071.10.0888
MA0072.10.345
MA0073.10.809
MA0074.10.719
MA0076.10.985
MA0077.10.601
MA0078.10.735
MA0079.20.892
MA0080.23.85109e-6
MA0081.10.00875
MA0083.10.0087
MA0084.10.889
MA0087.10.914
MA0088.10.0288
MA0090.10.0913
MA0091.10.335
MA0092.10.558
MA0093.10.657
MA0099.20.00599
MA0100.10.542
MA0101.10.26
MA0102.21.49661e-6
MA0103.10.0429
MA0104.20.743
MA0105.10.377
MA0106.10.0897
MA0107.10.125
MA0108.20.0174
MA0111.10.394
MA0112.20.0144
MA0113.10.0422
MA0114.10.0624
MA0115.10.92
MA0116.10.135
MA0117.10.54
MA0119.10.161
MA0122.10.74
MA0124.10.01
MA0125.10.132
MA0131.10.785
MA0135.10.286
MA0136.19.23987e-6
MA0137.20.221
MA0138.20.349
MA0139.10.558
MA0140.10.337
MA0141.10.0503
MA0142.10.398
MA0143.10.75
MA0144.10.643
MA0145.10.325
MA0146.10.034
MA0147.10.564
MA0148.10.28
MA0149.10.381
MA0150.10.812
MA0152.10.371
MA0153.10.397
MA0154.10.178
MA0155.10.239
MA0156.10.0223
MA0157.10.0419
MA0159.10.811
MA0160.10.251
MA0162.10.212
MA0163.10.0379
MA0164.10.919
MA0258.10.23
MA0259.10.825



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11344

Novel motifP-value
10.506
100.802
1000.381
1010.664
1020.609
1030.414
1040.393
1050.205
1060.794
1070.0908
1080.915
1090.0123
110.0251
1100.0571
1110.602
1120.653
1130.661
1140.767
1150.395
1160.0321
1170.37
1180.771
1190.815
120.598
1200.188
1210.327
1220.636
1230.00605
1240.624
1250.894
1260.585
1270.638
1280.794
1290.856
130.205
1300.0074
1310.367
1320.26
1330.403
1340.0532
1350.917
1360.986
1370.0594
1380.175
1390.231
140.926
1400.677
1410.426
1420.203
1430.273
1440.756
1450.446
1460.0249
1470.281
1480.734
1490.435
150.913
1500.302
1510.637
1520.314
1530.178
1540.14
1550.65
1560.585
1570.747
1580.132
1590.493
160.314
1600.0178
1610.278
1620.444
1630.319
1640.807
1650.645
1660.826
1670.417
1680.737
1690.0745
170.459
180.241
190.0353
20.661
200.755
210.337
220.0778
230.92
240.659
250.921
260.0439
270.481
280.0981
290.552
30.353
300.159
310.471
320.00475
330.194
340.264
350.633
360.291
370.147
380.422
390.339
40.402
400.0278
410.544
420.556
430.35
440.357
450.473
460.0817
470.0756
480.0786
490.191
50.896
500.149
510.466
520.786
530.431
540.645
550.806
560.195
570.336
580.327
590.0287
60.625
600.66
610.503
620.421
630.113
640.117
650.0932
660.023
670.823
680.0762
690.0998
70.587
700.438
710.0634
720.625
730.0761
740.864
750.438
760.207
770.0719
780.965
790.858
80.0322
800.726
810.973
820.908
830.56
840.499
850.424
860.703
870.133
880.284
890.0649
90.416
900.126
910.173
920.685
930.61
940.486
950.113
960.556
970.771
980.658
992.84549e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11344


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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