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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008120
|DRA_sample_Accession=CAGE@SAMD00005909
|accession_numbers=CAGE;DRX008228;DRR009100;DRZ000525;DRZ001910
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005909
|accession_numbers=CAGE;DRX008228;DRR009100;DRZ000525;DRZ001910;DRZ011875;DRZ013260
|accession_numbers_RNASeq=sRNA-Seq;DRX037085;DRR041451;DRZ007093
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0010523,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001915,UBERON:0004535,UBERON:0001982,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0010523,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001915,UBERON:0004535,UBERON:0001982,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002144
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002144
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.80!818.58!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.59!390.01!SOX17;;chr22:19748231..19748317,+!p1@TBX1!2.41!257.49!TBX1;;chr8:10588010..10588030,-!p1@SOX7!2.17!147.17!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.17!145.46!ERG;;chr17:6926362..6926377,+!p1@BCL6B!2.05!111.78!BCL6B;;chr1:214161272..214161322,+!p1@PROX1!1.98!132.04!PROX1;;chr2:177053386..177053402,+!p1@HOXD1!1.76!56.62!HOXD1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.65!43.93!ZBED1;;chr12:96588368..96588394,+!p3@ELK3!1.62!106.41!ELK3;;chr19:46801639..46801699,+!p1@HIF3A!1.55!34.66!HIF3A;;chr10:94449703..94449718,+!p1@HHEX!1.49!111.29!HHEX;;chr4:146404119..146404158,+!p9@SMAD1!1.45!27.33!SMAD1;;chr3:12330560..12330579,+!p1@PPARG!1.44!30.26!PPARG;;chr1:47695003..47695042,-!p2@TAL1!1.38!22.94!TAL1;;chr18:53068911..53068935,-!p4@TCF4!1.36!24.89!TCF4;;chr22:19746969..19746987,+!p2@TBX1!1.36!21.72!TBX1;;chr17:1959369..1959388,+!p2@HIC1!1.26!44.66!HIC1;;chr4:146402843..146402864,+!p3@SMAD1!1.26!33.68!SMAD1;;chr20:6748325..6748352,+!p1@BMP2!1.25!24.16!BMP2;;chr2:176994408..176994492,+!p1@HOXD8!1.24!16.35!HOXD8;;chr2:46524897..46524911,+!p2@EPAS1!1.17!38.07!EPAS1;;chr3:12329397..12329433,+!p2@PPARG!1.17!31.48!PPARG;;chr10:94449675..94449694,+!p2@HHEX!1.13!33.92!HHEX;;chr2:176987441..176987454,+!p1@HOXD9!1.13!12.45!HOXD9;;chr22:41697497..41697515,+!p2@ZC3H7B!1.10!31.73!ZC3H7B;;chr1:6479968..6479986,-!p1@HES2!1.10!11.71!HES2;;chr8:55370720..55370733,+!p2@SOX17!1.09!11.23!SOX17;;chr18:22932080..22932170,-!p1@ZNF521!1.06!45.40!ZNF521;;chr3:12329358..12329393,+!p3@PPARG!1.06!26.36!PPARG;;chr4:146403912..146403972,+!p5@SMAD1!1.06!13.42!SMAD1;;chr16:79634624..79634642,-!p1@MAF!1.05!41.00!MAF;;chr18:52989031..52989079,-!p2@TCF4!1.05!24.16!TCF4;;chr18:52989001..52989030,-!p10@TCF4!1.05!11.23!TCF4;;chr20:62680671..62680679,-!p2@SOX18!1.05!10.25!SOX18;;chr19:13213511..13213545,-!p2@LYL1!1.04!10.74!LYL1;;chr18:52988979..52988993,-!p18@TCF4!1.03!9.76!TCF4;;chr4:146404160..146404186,+!p13@SMAD1!1.02!9.52!SMAD1;;chr13:37494365..37494381,-!p1@SMAD9!1.00!15.86!SMAD9;;chr20:50159198..50159299,-!p1@NFATC2!1.00!13.18!NFATC2;;chr2:46524537..46524553,+!p1@EPAS1!0.99!879.11!EPAS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.43!ZFPM2;;chr6:85474299..85474324,-!p1@TBX18!0.99!16.11!TBX18;;chr2:176994919..176994931,+!p2@HOXD8!0.99!8.79!HOXD8;;chr20:42543441..42543497,+!p1@TOX2!0.98!39.54!TOX2;;chr19:13213399..13213414,-!p6@LYL1!0.98!8.54!LYL1;;chr22:38597987..38598021,+!p2@MAFF!0.97!52.47!MAFF;;chr7:15726296..15726315,-!p1@MEOX2!0.97!8.30!MEOX2;;chr22:41697484..41697496,+!p3@ZC3H7B!0.96!10.49!ZC3H7B;;chr7:15726243..15726293,-!p2@MEOX2!0.96!8.05!MEOX2;;chr16:79633894..79633954,-!p3@MAF!0.95!15.62!MAF;;chr4:146436110..146436135,+!p6@SMAD1!0.95!11.47!SMAD1;;chr12:80084018..80084035,-!p17@PAWR!0.94!7.81!PAWR;;chr5:92918919..92918942,+!p1@NR2F1!0.93!34.66!NR2F1;;chr20:62679771..62679782,-!p4@SOX18!0.93!7.57!SOX18;;chr17:1958388..1958404,+!p1@HIC1!0.92!48.57!HIC1;;chr12:80084167..80084197,-!p5@PAWR!0.91!17.08!PAWR;;chr4:146402827..146402839,+!p10@SMAD1!0.91!7.08!SMAD1;;chr20:50721803..50721857,-!p2@ZFP64!0.89!10.98!ZFP64;;chr17:46675420..46675465,-!p3@HOXB6!0.89!7.81!HOXB6;;chr4:146402795..146402816,+!p7@SMAD1!0.88!9.03!SMAD1;;chr2:46602879..46602899,+!p8@EPAS1!0.88!8.05!EPAS1;;chr7:26191809..26191890,+!p1@NFE2L3!0.87!33.19!NFE2L3;;chr11:128563948..128564003,+!p1@FLI1!0.86!79.32!FLI1;;chr3:128206762..128206781,-!p2@GATA2!0.86!41.25!GATA2;;chr15:83953397..83953425,-!p1@BNC1!0.86!7.32!BNC1;;chr15:96873984..96873999,+!p3@NR2F2!0.85!47.59!NR2F2;;chr9:14314131..14314147,-!p2@NFIB!0.85!36.37!NFIB;;chr7:27196267..27196311,-!p1@HOXA7!0.85!6.10!HOXA7;;chr17:4890695..4890773,-!p2@CAMTA2!0.84!19.52!CAMTA2;;chr6:85473156..85473210,-!p2@TBX18!0.84!7.32!TBX18;;chr16:85932760..85932775,+!p1@IRF8!0.84!5.86!IRF8;;chr2:177001290..177001315,+!p1@HOXD3!0.84!5.86!HOXD3;;chr1:214161358..214161377,+!p3@PROX1!0.84!5.86!PROX1;;chr6:21597765..21597779,+!p2@SOX4!0.82!48.57!SOX4;;chr18:52989565..52989623,-!p9@TCF4!0.82!7.32!TCF4;;chr6:21593973..21593988,+!p1@SOX4!0.81!211.85!SOX4;;chr16:86600426..86600441,+!p1@FOXC2!0.81!14.40!FOXC2;;chr11:47279504..47279563,+!p1@NR1H3!0.81!13.18!NR1H3;;chr2:46602901..46602926,+!p7@EPAS1!0.80!7.32!EPAS1;;chr7:27205136..27205164,-!p1@HOXA9!0.80!5.37!HOXA9;;chr17:46688334..46688385,-!p1@HOXB7!0.79!7.81!HOXB7;;chr3:169381420..169381535,-!p1@MECOM!0.79!6.10!MECOM;;chr2:176987463..176987479,+!p2@HOXD9!0.79!5.13!HOXD9;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.61!MXD3;;chr16:8962202..8962222,-!p3@CARHSP1!0.78!9.27!CARHSP1;;chr1:156470494..156470505,-!p3@MEF2D!0.78!7.57!MEF2D;;chr19:49865646..49865718,-!p1@TEAD2!0.77!45.64!TEAD2;;chr17:6926381..6926392,+!p2@BCL6B!0.77!4.88!BCL6B;;chr8:55370884..55370896,+!p5@SOX17!0.77!4.88!SOX17;;chr22:19747040..19747054,+!p3@TBX1!0.77!4.88!TBX1;;chr11:65430554..65430579,-!p3@RELA!0.76!12.94!RELA;;chr20:42543506..42543549,+!p2@TOX2!0.76!12.20!TOX2;;chr20:62462566..62462631,-!p1@ZBTB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|ffid_belonging_in_development=CL:0002546,CL:0000222
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Line 40: Line 44:
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor3.CNhs12024.11414-118F1.hg38.nobarcode.bam
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|id=FF:11414-118F1
|id=FF:11414-118F1
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|is_obsolete=
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|library_id=CNhs12024
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|library_id_phase_based=2:CNhs12024
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11414
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GTGGCC.11414
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11414
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GTGGCC.11414
|name=Endothelial Cells - Microvascular, donor3
|name=Endothelial Cells - Microvascular, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 65:
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|sample_category=primary cells
Line 88: Line 106:
|top_motifs=SOX{8,9,10}:2.57369343519;RXR{A,B,G}:1.49801485596;XCPE1{core}:1.49070225;TP53:1.37425823456;TLX1..3_NFIC{dimer}:1.21692928226;ZNF423:1.17611901054;TFAP2B:1.16419404812;NFATC1..3:1.16272869915;ZNF238:1.1426628428;ZIC1..3:1.10961642342;TFAP4:1.01321429902;IKZF1:1.00637754895;TFAP2{A,C}:1.00079379587;SP1:0.983322332799;PAX1,9:0.878660259395;EGR1..3:0.838200999427;HIC1:0.809083983137;UFEwm:0.78804598888;EBF1:0.757656365787;ZBTB6:0.749466296307;SOX2:0.732688049873;PAX6:0.708846597645;PAX5:0.689846389621;SPZ1:0.653183051181;HBP1_HMGB_SSRP1_UBTF:0.615204814153;ZNF148:0.555214705508;TEAD1:0.541366407638;ETS1,2:0.536665208689;SOX5:0.529521305414;TEF:0.523862166378;AR:0.521503441562;FOXL1:0.494833451412;PATZ1:0.483509888055;LMO2:0.44820366697;IKZF2:0.433424661997;GZF1:0.430508044266;MAZ:0.422230424373;HES1:0.418704928161;bHLH_family:0.414130950058;GATA6:0.407034868792;MYOD1:0.403748000096;POU3F1..4:0.398631873645;GATA4:0.398380025587;MTE{core}:0.389627698202;SPIB:0.388346861488;TOPORS:0.349300199407;REST:0.343130631947;HNF4A_NR2F1,2:0.298127921903;GTF2A1,2:0.279052590442;SOX17:0.275451186719;RREB1:0.238686289334;ADNP_IRX_SIX_ZHX:0.232953505894;TBP:0.229637416595;NR5A1,2:0.222110068864;NKX2-2,8:0.221455532019;TAL1_TCF{3,4,12}:0.198229845084;ELF1,2,4:0.184369560796;LHX3,4:0.181278151585;ONECUT1,2:0.170341167598;HAND1,2:0.165166428583;ALX4:0.15647165698;LEF1_TCF7_TCF7L1,2:0.141520987992;STAT2,4,6:0.140656400837;ZFP161:0.123837534112;NFKB1_REL_RELA:0.100819326402;ARID5B:0.0939880522168;FOX{D1,D2}:0.0647489466328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0604454163874;NANOG{mouse}:0.0540654298545;EVI1:0.0368548426214;SRF:0.0258533966506;ZNF384:0.0146873436614;GFI1B:0.00422523108982;FOXO1,3,4:-0.00925327138595;FOXQ1:-0.0107137912987;NKX2-3_NKX2-5:-0.0288643792622;MED-1{core}:-0.0297668337885;TFDP1:-0.0452613211856;TFCP2:-0.0606510906083;XBP1:-0.0666159784996;GTF2I:-0.0739532858428;ESR1:-0.0785841889506;ESRRA:-0.123616652886;NFE2:-0.137452611568;MEF2{A,B,C,D}:-0.139631719434;RXRA_VDR{dimer}:-0.149425181935;YY1:-0.153097237134;FOXM1:-0.165861923793;CDC5L:-0.166863476408;PITX1..3:-0.184636414806;SPI1:-0.184706586843;ATF2:-0.185583676244;SNAI1..3:-0.198395180717;IRF1,2:-0.200566131452;HNF1A:-0.244534504056;PRDM1:-0.249275544971;BACH2:-0.256024436088;MTF1:-0.260539561847;GLI1..3:-0.265683767868;KLF4:-0.27006496995;FOS_FOS{B,L1}_JUN{B,D}:-0.279877974711;SREBF1,2:-0.282389195227;FOX{F1,F2,J1}:-0.290361673405;E2F1..5:-0.296768202058;HOX{A5,B5}:-0.299158879817;NANOG:-0.304460748532;PPARG:-0.310571488293;NR6A1:-0.317928242473;EN1,2:-0.319179257532;GCM1,2:-0.323833359389;NFE2L2:-0.326819727933;CUX2:-0.331324323598;FOXD3:-0.337415819185;NR3C1:-0.359479260008;ZNF143:-0.370152282639;NHLH1,2:-0.388956785761;ZEB1:-0.4048601028;FOX{I1,J2}:-0.413117031786;FOXA2:-0.429485710006;MYB:-0.455348830547;FOSL2:-0.457002142672;NFY{A,B,C}:-0.460880755145;AIRE:-0.463041076108;ALX1:-0.475284425902;NR1H4:-0.478860423813;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.481771768838;T:-0.485221598726;SMAD1..7,9:-0.488469560091;BPTF:-0.501359840175;TBX4,5:-0.502151761657;MYFfamily:-0.511819907805;GFI1:-0.524703541066;POU6F1:-0.530059398601;HLF:-0.562734692615;HIF1A:-0.583377502549;DMAP1_NCOR{1,2}_SMARC:-0.59292326151;RBPJ:-0.614203292047;RFX1:-0.639511961742;CDX1,2,4:-0.662744799551;MZF1:-0.671515507717;FOXP1:-0.676200385764;NFE2L1:-0.678101167185;NRF1:-0.680561537551;HMGA1,2:-0.683222938474;PAX4:-0.683262878492;BREu{core}:-0.695567518903;STAT1,3:-0.69771344218;POU1F1:-0.710385018171;ZBTB16:-0.710933908132;PAX8:-0.715721951838;IRF7:-0.718849118458;TLX2:-0.720051110213;CREB1:-0.743848498037;CRX:-0.751350146568;PBX1:-0.76284241708;ATF6:-0.776926627829;JUN:-0.78100760902;RUNX1..3:-0.781854047982;EP300:-0.783582891691;CEBPA,B_DDIT3:-0.805095542444;PAX3,7:-0.824933274585;PAX2:-0.830397927844;NKX2-1,4:-0.833020091049;OCT4_SOX2{dimer}:-0.859168362478;RORA:-0.877836862422;MYBL2:-0.880904383348;ATF4:-0.886997228931;TGIF1:-0.892231990353;DBP:-0.906118831771;POU5F1:-0.918645096922;POU2F1..3:-0.94716125398;NKX3-2:-0.990994025555;NKX6-1,2:-1.01128526049;HMX1:-1.01773022143;HOX{A4,D4}:-1.02518976814;FOXN1:-1.03026311363;STAT5{A,B}:-1.04507873598;FOXP3:-1.07408076918;AHR_ARNT_ARNT2:-1.08106596288;ELK1,4_GABP{A,B1}:-1.14969688083;ATF5_CREB3:-1.23937028529;NKX3-1:-1.25560340721;HSF1,2:-1.27247923135;NFIX:-1.29741358723;PRRX1,2:-1.30424022856;RFX2..5_RFXANK_RFXAP:-1.3250668206;NFIL3:-1.36410025851;PDX1:-1.37488474949;MAFB:-1.38707178753;VSX1,2:-1.42110617202;HOX{A6,A7,B6,B7}:-1.45976703797;HOXA9_MEIS1:-2.24482890671
|top_motifs=SOX{8,9,10}:2.57369343519;RXR{A,B,G}:1.49801485596;XCPE1{core}:1.49070225;TP53:1.37425823456;TLX1..3_NFIC{dimer}:1.21692928226;ZNF423:1.17611901054;TFAP2B:1.16419404812;NFATC1..3:1.16272869915;ZNF238:1.1426628428;ZIC1..3:1.10961642342;TFAP4:1.01321429902;IKZF1:1.00637754895;TFAP2{A,C}:1.00079379587;SP1:0.983322332799;PAX1,9:0.878660259395;EGR1..3:0.838200999427;HIC1:0.809083983137;UFEwm:0.78804598888;EBF1:0.757656365787;ZBTB6:0.749466296307;SOX2:0.732688049873;PAX6:0.708846597645;PAX5:0.689846389621;SPZ1:0.653183051181;HBP1_HMGB_SSRP1_UBTF:0.615204814153;ZNF148:0.555214705508;TEAD1:0.541366407638;ETS1,2:0.536665208689;SOX5:0.529521305414;TEF:0.523862166378;AR:0.521503441562;FOXL1:0.494833451412;PATZ1:0.483509888055;LMO2:0.44820366697;IKZF2:0.433424661997;GZF1:0.430508044266;MAZ:0.422230424373;HES1:0.418704928161;bHLH_family:0.414130950058;GATA6:0.407034868792;MYOD1:0.403748000096;POU3F1..4:0.398631873645;GATA4:0.398380025587;MTE{core}:0.389627698202;SPIB:0.388346861488;TOPORS:0.349300199407;REST:0.343130631947;HNF4A_NR2F1,2:0.298127921903;GTF2A1,2:0.279052590442;SOX17:0.275451186719;RREB1:0.238686289334;ADNP_IRX_SIX_ZHX:0.232953505894;TBP:0.229637416595;NR5A1,2:0.222110068864;NKX2-2,8:0.221455532019;TAL1_TCF{3,4,12}:0.198229845084;ELF1,2,4:0.184369560796;LHX3,4:0.181278151585;ONECUT1,2:0.170341167598;HAND1,2:0.165166428583;ALX4:0.15647165698;LEF1_TCF7_TCF7L1,2:0.141520987992;STAT2,4,6:0.140656400837;ZFP161:0.123837534112;NFKB1_REL_RELA:0.100819326402;ARID5B:0.0939880522168;FOX{D1,D2}:0.0647489466328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0604454163874;NANOG{mouse}:0.0540654298545;EVI1:0.0368548426214;SRF:0.0258533966506;ZNF384:0.0146873436614;GFI1B:0.00422523108982;FOXO1,3,4:-0.00925327138595;FOXQ1:-0.0107137912987;NKX2-3_NKX2-5:-0.0288643792622;MED-1{core}:-0.0297668337885;TFDP1:-0.0452613211856;TFCP2:-0.0606510906083;XBP1:-0.0666159784996;GTF2I:-0.0739532858428;ESR1:-0.0785841889506;ESRRA:-0.123616652886;NFE2:-0.137452611568;MEF2{A,B,C,D}:-0.139631719434;RXRA_VDR{dimer}:-0.149425181935;YY1:-0.153097237134;FOXM1:-0.165861923793;CDC5L:-0.166863476408;PITX1..3:-0.184636414806;SPI1:-0.184706586843;ATF2:-0.185583676244;SNAI1..3:-0.198395180717;IRF1,2:-0.200566131452;HNF1A:-0.244534504056;PRDM1:-0.249275544971;BACH2:-0.256024436088;MTF1:-0.260539561847;GLI1..3:-0.265683767868;KLF4:-0.27006496995;FOS_FOS{B,L1}_JUN{B,D}:-0.279877974711;SREBF1,2:-0.282389195227;FOX{F1,F2,J1}:-0.290361673405;E2F1..5:-0.296768202058;HOX{A5,B5}:-0.299158879817;NANOG:-0.304460748532;PPARG:-0.310571488293;NR6A1:-0.317928242473;EN1,2:-0.319179257532;GCM1,2:-0.323833359389;NFE2L2:-0.326819727933;CUX2:-0.331324323598;FOXD3:-0.337415819185;NR3C1:-0.359479260008;ZNF143:-0.370152282639;NHLH1,2:-0.388956785761;ZEB1:-0.4048601028;FOX{I1,J2}:-0.413117031786;FOXA2:-0.429485710006;MYB:-0.455348830547;FOSL2:-0.457002142672;NFY{A,B,C}:-0.460880755145;AIRE:-0.463041076108;ALX1:-0.475284425902;NR1H4:-0.478860423813;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.481771768838;T:-0.485221598726;SMAD1..7,9:-0.488469560091;BPTF:-0.501359840175;TBX4,5:-0.502151761657;MYFfamily:-0.511819907805;GFI1:-0.524703541066;POU6F1:-0.530059398601;HLF:-0.562734692615;HIF1A:-0.583377502549;DMAP1_NCOR{1,2}_SMARC:-0.59292326151;RBPJ:-0.614203292047;RFX1:-0.639511961742;CDX1,2,4:-0.662744799551;MZF1:-0.671515507717;FOXP1:-0.676200385764;NFE2L1:-0.678101167185;NRF1:-0.680561537551;HMGA1,2:-0.683222938474;PAX4:-0.683262878492;BREu{core}:-0.695567518903;STAT1,3:-0.69771344218;POU1F1:-0.710385018171;ZBTB16:-0.710933908132;PAX8:-0.715721951838;IRF7:-0.718849118458;TLX2:-0.720051110213;CREB1:-0.743848498037;CRX:-0.751350146568;PBX1:-0.76284241708;ATF6:-0.776926627829;JUN:-0.78100760902;RUNX1..3:-0.781854047982;EP300:-0.783582891691;CEBPA,B_DDIT3:-0.805095542444;PAX3,7:-0.824933274585;PAX2:-0.830397927844;NKX2-1,4:-0.833020091049;OCT4_SOX2{dimer}:-0.859168362478;RORA:-0.877836862422;MYBL2:-0.880904383348;ATF4:-0.886997228931;TGIF1:-0.892231990353;DBP:-0.906118831771;POU5F1:-0.918645096922;POU2F1..3:-0.94716125398;NKX3-2:-0.990994025555;NKX6-1,2:-1.01128526049;HMX1:-1.01773022143;HOX{A4,D4}:-1.02518976814;FOXN1:-1.03026311363;STAT5{A,B}:-1.04507873598;FOXP3:-1.07408076918;AHR_ARNT_ARNT2:-1.08106596288;ELK1,4_GABP{A,B1}:-1.14969688083;ATF5_CREB3:-1.23937028529;NKX3-1:-1.25560340721;HSF1,2:-1.27247923135;NFIX:-1.29741358723;PRRX1,2:-1.30424022856;RFX2..5_RFXANK_RFXAP:-1.3250668206;NFIL3:-1.36410025851;PDX1:-1.37488474949;MAFB:-1.38707178753;VSX1,2:-1.42110617202;HOX{A6,A7,B6,B7}:-1.45976703797;HOXA9_MEIS1:-2.24482890671
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11414-118F1;search_select_hide=table117:FF:11414-118F1
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Endothelial Cells - Microvascular, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12024
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecapillary
dev stage47 years old adult
sexfemale
age47
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2548
catalog numberCA100-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005909
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12024 CAGE DRX008228 DRR009100
Accession ID Hg19

Library idBAMCTSS
CNhs12024 DRZ000525 DRZ001910
Accession ID Hg38

Library idBAMCTSS
CNhs12024 DRZ011875 DRZ013260
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005909
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GTGGCC sRNA-Seq DRX037085 DRR041451
Accession ID Hg19

Library idBAMCTSS
SRhi10006.GTGGCC DRZ007093


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.184
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.668
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.243
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0414
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0483
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.219
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.206
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0171
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0133
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.00842
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0948
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.346
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.505
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0948
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12024

Jaspar motifP-value
MA0002.20.117
MA0003.10.551
MA0004.10.891
MA0006.10.0313
MA0007.10.254
MA0009.10.901
MA0014.10.886
MA0017.10.941
MA0018.21.44507e-4
MA0019.10.0778
MA0024.10.155
MA0025.10.285
MA0027.10.925
MA0028.10.00382
MA0029.10.643
MA0030.10.878
MA0031.10.93
MA0035.20.158
MA0038.10.104
MA0039.20.336
MA0040.10.583
MA0041.10.161
MA0042.10.758
MA0043.11.26264e-5
MA0046.10.901
MA0047.20.681
MA0048.10.336
MA0050.10.649
MA0051.10.837
MA0052.10.649
MA0055.10.129
MA0057.10.576
MA0058.10.906
MA0059.10.458
MA0060.10.271
MA0061.10.973
MA0062.22.80267e-5
MA0065.20.295
MA0066.10.79
MA0067.10.0614
MA0068.10.675
MA0069.10.0587
MA0070.10.961
MA0071.10.898
MA0072.10.9
MA0073.10.822
MA0074.10.255
MA0076.11.27196e-5
MA0077.19.35597e-11
MA0078.10.0106
MA0079.20.236
MA0080.20.371
MA0081.10.671
MA0083.10.679
MA0084.10.699
MA0087.10.299
MA0088.10.394
MA0090.10.154
MA0091.10.114
MA0092.10.652
MA0093.10.975
MA0099.20.00785
MA0100.10.0402
MA0101.10.0305
MA0102.22.16765e-5
MA0103.10.264
MA0104.20.0338
MA0105.10.321
MA0106.10.0338
MA0107.10.0235
MA0108.20.256
MA0111.10.396
MA0112.20.803
MA0113.10.624
MA0114.10.911
MA0115.10.474
MA0116.10.185
MA0117.10.0213
MA0119.10.511
MA0122.10.565
MA0124.10.863
MA0125.10.787
MA0131.10.76
MA0135.10.289
MA0136.10.0337
MA0137.20.0201
MA0138.20.116
MA0139.10.923
MA0140.10.891
MA0141.10.457
MA0142.10.457
MA0143.10.94
MA0144.10.942
MA0145.10.411
MA0146.10.145
MA0147.10.033
MA0148.10.329
MA0149.10.184
MA0150.10.0344
MA0152.10.386
MA0153.10.383
MA0154.10.933
MA0155.10.0764
MA0156.10.259
MA0157.10.697
MA0159.10.996
MA0160.10.477
MA0162.10.334
MA0163.10.109
MA0164.10.265
MA0258.10.502
MA0259.10.036



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12024

Novel motifP-value
10.422
100.0721
1000.222
1010.0846
1020.611
1030.96
1040.876
1050.296
1060.0578
1070.00983
1080.349
1090.39
110.507
1100.306
1110.672
1120.709
1130.202
1140.995
1150.281
1160.556
1170.854
1180.908
1190.286
120.849
1200.0713
1210.998
1220.905
1230.163
1240.00486
1250.615
1260.711
1270.223
1280.865
1290.343
130.587
1300.403
1310.0415
1320.017
1330.0235
1340.917
1350.903
1360.014
1370.102
1380.837
1390.713
140.672
1400.105
1411
1420.746
1430.637
1440.825
1450.276
1460.517
1470.0837
1480.249
1490.143
150.236
1500.0632
1510.754
1520.00642
1530.536
1540.0798
1550.793
1560.428
1571
1580.147
1590.859
160.675
1600.14
1610.741
1620.743
1630.7
1640.302
1650.112
1660.588
1670.178
1680.709
1690.0949
170.322
180.272
190.204
20.822
200.672
210.83
220.268
230.932
240.951
250.131
260.674
270.299
280.157
290.437
30.737
300.992
310.378
320.179
330.317
340.404
350.184
360.152
370.535
380.336
390.421
40.83
400.00532
410.822
420.433
430.587
440.779
450.364
460.982
470.971
480.757
490.34
50.537
500.512
510.895
520.776
530.218
540.778
550.298
560.665
570.864
580.0736
590.166
60.0643
600.877
610.202
620.119
630.667
640.85
650.27
660.744
670.951
680.0708
690.636
70.224
700.64
710.0683
720.37
730.00172
740.411
750.686
760.441
770.279
780.747
790.0191
80.0983
800.0615
810.402
820.667
830.274
840.191
850.638
860.82
870.0822
880.994
890.462
90.854
900.18
910.74
920.764
930.856
940.244
950.0571
960.446
970.354
980.811
990.0286



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12024


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002144 (capillary endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0010523 (microcirculatory vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001915 (endothelium of capillary)
0004535 (cardiovascular system)
0001982 (capillary)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000050 (human microvascular endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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