FF:11414-118F1: Difference between revisions

Latest revision as of 17:59, 4 June 2020

Name:	Endothelial Cells - Microvascular, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12024
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	capillary
dev stage	47 years old adult
sex	female
age	47
cell type	blood vessel endothelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2548
catalog number	CA100-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005909

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12024		CAGE		DRX008228		DRR009100

Accession ID Hg19

Library id		BAM		CTSS
CNhs12024		DRZ000525		DRZ001910

Accession ID Hg38

Library id		BAM		CTSS
CNhs12024		DRZ011875		DRZ013260

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005909

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10006.GTGGCC		sRNA-Seq		DRX037085		DRR041451

Accession ID Hg19

Library id		BAM		CTSS
SRhi10006.GTGGCC		DRZ007093

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.152
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.184
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.668
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.243
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0414
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0483
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.219
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.206
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0171
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0133
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.00842
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0948
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.346
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.505
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0948
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12024

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.117
MA0003.1	MA0003.1	0.551
MA0004.1	MA0004.1	0.891
MA0006.1	MA0006.1	0.0313
MA0007.1	MA0007.1	0.254
MA0009.1	MA0009.1	0.901
MA0014.1	MA0014.1	0.886
MA0017.1	MA0017.1	0.941
MA0018.2	MA0018.2	1.44507e-4
MA0019.1	MA0019.1	0.0778
MA0024.1	MA0024.1	0.155
MA0025.1	MA0025.1	0.285
MA0027.1	MA0027.1	0.925
MA0028.1	MA0028.1	0.00382
MA0029.1	MA0029.1	0.643
MA0030.1	MA0030.1	0.878
MA0031.1	MA0031.1	0.93
MA0035.2	MA0035.2	0.158
MA0038.1	MA0038.1	0.104
MA0039.2	MA0039.2	0.336
MA0040.1	MA0040.1	0.583
MA0041.1	MA0041.1	0.161
MA0042.1	MA0042.1	0.758
MA0043.1	MA0043.1	1.26264e-5
MA0046.1	MA0046.1	0.901
MA0047.2	MA0047.2	0.681
MA0048.1	MA0048.1	0.336
MA0050.1	MA0050.1	0.649
MA0051.1	MA0051.1	0.837
MA0052.1	MA0052.1	0.649
MA0055.1	MA0055.1	0.129
MA0057.1	MA0057.1	0.576
MA0058.1	MA0058.1	0.906
MA0059.1	MA0059.1	0.458
MA0060.1	MA0060.1	0.271
MA0061.1	MA0061.1	0.973
MA0062.2	MA0062.2	2.80267e-5
MA0065.2	MA0065.2	0.295
MA0066.1	MA0066.1	0.79
MA0067.1	MA0067.1	0.0614
MA0068.1	MA0068.1	0.675
MA0069.1	MA0069.1	0.0587
MA0070.1	MA0070.1	0.961
MA0071.1	MA0071.1	0.898
MA0072.1	MA0072.1	0.9
MA0073.1	MA0073.1	0.822
MA0074.1	MA0074.1	0.255
MA0076.1	MA0076.1	1.27196e-5
MA0077.1	MA0077.1	9.35597e-11
MA0078.1	MA0078.1	0.0106
MA0079.2	MA0079.2	0.236
MA0080.2	MA0080.2	0.371
MA0081.1	MA0081.1	0.671
MA0083.1	MA0083.1	0.679
MA0084.1	MA0084.1	0.699
MA0087.1	MA0087.1	0.299
MA0088.1	MA0088.1	0.394
MA0090.1	MA0090.1	0.154
MA0091.1	MA0091.1	0.114
MA0092.1	MA0092.1	0.652
MA0093.1	MA0093.1	0.975
MA0099.2	MA0099.2	0.00785
MA0100.1	MA0100.1	0.0402
MA0101.1	MA0101.1	0.0305
MA0102.2	MA0102.2	2.16765e-5
MA0103.1	MA0103.1	0.264
MA0104.2	MA0104.2	0.0338
MA0105.1	MA0105.1	0.321
MA0106.1	MA0106.1	0.0338
MA0107.1	MA0107.1	0.0235
MA0108.2	MA0108.2	0.256
MA0111.1	MA0111.1	0.396
MA0112.2	MA0112.2	0.803
MA0113.1	MA0113.1	0.624
MA0114.1	MA0114.1	0.911
MA0115.1	MA0115.1	0.474
MA0116.1	MA0116.1	0.185
MA0117.1	MA0117.1	0.0213
MA0119.1	MA0119.1	0.511
MA0122.1	MA0122.1	0.565
MA0124.1	MA0124.1	0.863
MA0125.1	MA0125.1	0.787
MA0131.1	MA0131.1	0.76
MA0135.1	MA0135.1	0.289
MA0136.1	MA0136.1	0.0337
MA0137.2	MA0137.2	0.0201
MA0138.2	MA0138.2	0.116
MA0139.1	MA0139.1	0.923
MA0140.1	MA0140.1	0.891
MA0141.1	MA0141.1	0.457
MA0142.1	MA0142.1	0.457
MA0143.1	MA0143.1	0.94
MA0144.1	MA0144.1	0.942
MA0145.1	MA0145.1	0.411
MA0146.1	MA0146.1	0.145
MA0147.1	MA0147.1	0.033
MA0148.1	MA0148.1	0.329
MA0149.1	MA0149.1	0.184
MA0150.1	MA0150.1	0.0344
MA0152.1	MA0152.1	0.386
MA0153.1	MA0153.1	0.383
MA0154.1	MA0154.1	0.933
MA0155.1	MA0155.1	0.0764
MA0156.1	MA0156.1	0.259
MA0157.1	MA0157.1	0.697
MA0159.1	MA0159.1	0.996
MA0160.1	MA0160.1	0.477
MA0162.1	MA0162.1	0.334
MA0163.1	MA0163.1	0.109
MA0164.1	MA0164.1	0.265
MA0258.1	MA0258.1	0.502
MA0259.1	MA0259.1	0.036

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12024

Novel motif	Logo	P-value
1	1	0.422
10	10	0.0721
100	100	0.222
101	101	0.0846
102	102	0.611
103	103	0.96
104	104	0.876
105	105	0.296
106	106	0.0578
107	107	0.00983
108	108	0.349
109	109	0.39
11	11	0.507
110	110	0.306
111	111	0.672
112	112	0.709
113	113	0.202
114	114	0.995
115	115	0.281
116	116	0.556
117	117	0.854
118	118	0.908
119	119	0.286
12	12	0.849
120	120	0.0713
121	121	0.998
122	122	0.905
123	123	0.163
124	124	0.00486
125	125	0.615
126	126	0.711
127	127	0.223
128	128	0.865
129	129	0.343
13	13	0.587
130	130	0.403
131	131	0.0415
132	132	0.017
133	133	0.0235
134	134	0.917
135	135	0.903
136	136	0.014
137	137	0.102
138	138	0.837
139	139	0.713
14	14	0.672
140	140	0.105
141	141	1
142	142	0.746
143	143	0.637
144	144	0.825
145	145	0.276
146	146	0.517
147	147	0.0837
148	148	0.249
149	149	0.143
15	15	0.236
150	150	0.0632
151	151	0.754
152	152	0.00642
153	153	0.536
154	154	0.0798
155	155	0.793
156	156	0.428
157	157	1
158	158	0.147
159	159	0.859
16	16	0.675
160	160	0.14
161	161	0.741
162	162	0.743
163	163	0.7
164	164	0.302
165	165	0.112
166	166	0.588
167	167	0.178
168	168	0.709
169	169	0.0949
17	17	0.322
18	18	0.272
19	19	0.204
2	2	0.822
20	20	0.672
21	21	0.83
22	22	0.268
23	23	0.932
24	24	0.951
25	25	0.131
26	26	0.674
27	27	0.299
28	28	0.157
29	29	0.437
3	3	0.737
30	30	0.992
31	31	0.378
32	32	0.179
33	33	0.317
34	34	0.404
35	35	0.184
36	36	0.152
37	37	0.535
38	38	0.336
39	39	0.421
4	4	0.83
40	40	0.00532
41	41	0.822
42	42	0.433
43	43	0.587
44	44	0.779
45	45	0.364
46	46	0.982
47	47	0.971
48	48	0.757
49	49	0.34
5	5	0.537
50	50	0.512
51	51	0.895
52	52	0.776
53	53	0.218
54	54	0.778
55	55	0.298
56	56	0.665
57	57	0.864
58	58	0.0736
59	59	0.166
6	6	0.0643
60	60	0.877
61	61	0.202
62	62	0.119
63	63	0.667
64	64	0.85
65	65	0.27
66	66	0.744
67	67	0.951
68	68	0.0708
69	69	0.636
7	7	0.224
70	70	0.64
71	71	0.0683
72	72	0.37
73	73	0.00172
74	74	0.411
75	75	0.686
76	76	0.441
77	77	0.279
78	78	0.747
79	79	0.0191
8	8	0.0983
80	80	0.0615
81	81	0.402
82	82	0.667
83	83	0.274
84	84	0.191
85	85	0.638
86	86	0.82
87	87	0.0822
88	88	0.994
89	89	0.462
9	9	0.854
90	90	0.18
91	91	0.74
92	92	0.764
93	93	0.856
94	94	0.244
95	95	0.0571
96	96	0.446
97	97	0.354
98	98	0.811
99	99	0.0286

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12024

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000050 human microvascular endothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002144 (capillary endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0010523 (microcirculatory vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001915 (endothelium of capillary)
0004535 (cardiovascular system)
0001982 (capillary)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000050 (human microvascular endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005909
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005909
+|accession_numbers=CAGE;DRX008228;DRR009100;DRZ000525;DRZ001910;DRZ011875;DRZ013260
+|accession_numbers_RNASeq=sRNA-Seq;DRX037085;DRR041451;DRZ007093
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0010523,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001915,UBERON:0004535,UBERON:0001982,UBERON:0004537,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002144
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.80!818.58!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.59!390.01!SOX17;;chr22:19748231..19748317,+!p1@TBX1!2.41!257.49!TBX1;;chr8:10588010..10588030,-!p1@SOX7!2.17!147.17!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.17!145.46!ERG;;chr17:6926362..6926377,+!p1@BCL6B!2.05!111.78!BCL6B;;chr1:214161272..214161322,+!p1@PROX1!1.98!132.04!PROX1;;chr2:177053386..177053402,+!p1@HOXD1!1.76!56.62!HOXD1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.65!43.93!ZBED1;;chr12:96588368..96588394,+!p3@ELK3!1.62!106.41!ELK3;;chr19:46801639..46801699,+!p1@HIF3A!1.55!34.66!HIF3A;;chr10:94449703..94449718,+!p1@HHEX!1.49!111.29!HHEX;;chr4:146404119..146404158,+!p9@SMAD1!1.45!27.33!SMAD1;;chr3:12330560..12330579,+!p1@PPARG!1.44!30.26!PPARG;;chr1:47695003..47695042,-!p2@TAL1!1.38!22.94!TAL1;;chr18:53068911..53068935,-!p4@TCF4!1.36!24.89!TCF4;;chr22:19746969..19746987,+!p2@TBX1!1.36!21.72!TBX1;;chr17:1959369..1959388,+!p2@HIC1!1.26!44.66!HIC1;;chr4:146402843..146402864,+!p3@SMAD1!1.26!33.68!SMAD1;;chr20:6748325..6748352,+!p1@BMP2!1.25!24.16!BMP2;;chr2:176994408..176994492,+!p1@HOXD8!1.24!16.35!HOXD8;;chr2:46524897..46524911,+!p2@EPAS1!1.17!38.07!EPAS1;;chr3:12329397..12329433,+!p2@PPARG!1.17!31.48!PPARG;;chr10:94449675..94449694,+!p2@HHEX!1.13!33.92!HHEX;;chr2:176987441..176987454,+!p1@HOXD9!1.13!12.45!HOXD9;;chr22:41697497..41697515,+!p2@ZC3H7B!1.10!31.73!ZC3H7B;;chr1:6479968..6479986,-!p1@HES2!1.10!11.71!HES2;;chr8:55370720..55370733,+!p2@SOX17!1.09!11.23!SOX17;;chr18:22932080..22932170,-!p1@ZNF521!1.06!45.40!ZNF521;;chr3:12329358..12329393,+!p3@PPARG!1.06!26.36!PPARG;;chr4:146403912..146403972,+!p5@SMAD1!1.06!13.42!SMAD1;;chr16:79634624..79634642,-!p1@MAF!1.05!41.00!MAF;;chr18:52989031..52989079,-!p2@TCF4!1.05!24.16!TCF4;;chr18:52989001..52989030,-!p10@TCF4!1.05!11.23!TCF4;;chr20:62680671..62680679,-!p2@SOX18!1.05!10.25!SOX18;;chr19:13213511..13213545,-!p2@LYL1!1.04!10.74!LYL1;;chr18:52988979..52988993,-!p18@TCF4!1.03!9.76!TCF4;;chr4:146404160..146404186,+!p13@SMAD1!1.02!9.52!SMAD1;;chr13:37494365..37494381,-!p1@SMAD9!1.00!15.86!SMAD9;;chr20:50159198..50159299,-!p1@NFATC2!1.00!13.18!NFATC2;;chr2:46524537..46524553,+!p1@EPAS1!0.99!879.11!EPAS1;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.43!ZFPM2;;chr6:85474299..85474324,-!p1@TBX18!0.99!16.11!TBX18;;chr2:176994919..176994931,+!p2@HOXD8!0.99!8.79!HOXD8;;chr20:42543441..42543497,+!p1@TOX2!0.98!39.54!TOX2;;chr19:13213399..13213414,-!p6@LYL1!0.98!8.54!LYL1;;chr22:38597987..38598021,+!p2@MAFF!0.97!52.47!MAFF;;chr7:15726296..15726315,-!p1@MEOX2!0.97!8.30!MEOX2;;chr22:41697484..41697496,+!p3@ZC3H7B!0.96!10.49!ZC3H7B;;chr7:15726243..15726293,-!p2@MEOX2!0.96!8.05!MEOX2;;chr16:79633894..79633954,-!p3@MAF!0.95!15.62!MAF;;chr4:146436110..146436135,+!p6@SMAD1!0.95!11.47!SMAD1;;chr12:80084018..80084035,-!p17@PAWR!0.94!7.81!PAWR;;chr5:92918919..92918942,+!p1@NR2F1!0.93!34.66!NR2F1;;chr20:62679771..62679782,-!p4@SOX18!0.93!7.57!SOX18;;chr17:1958388..1958404,+!p1@HIC1!0.92!48.57!HIC1;;chr12:80084167..80084197,-!p5@PAWR!0.91!17.08!PAWR;;chr4:146402827..146402839,+!p10@SMAD1!0.91!7.08!SMAD1;;chr20:50721803..50721857,-!p2@ZFP64!0.89!10.98!ZFP64;;chr17:46675420..46675465,-!p3@HOXB6!0.89!7.81!HOXB6;;chr4:146402795..146402816,+!p7@SMAD1!0.88!9.03!SMAD1;;chr2:46602879..46602899,+!p8@EPAS1!0.88!8.05!EPAS1;;chr7:26191809..26191890,+!p1@NFE2L3!0.87!33.19!NFE2L3;;chr11:128563948..128564003,+!p1@FLI1!0.86!79.32!FLI1;;chr3:128206762..128206781,-!p2@GATA2!0.86!41.25!GATA2;;chr15:83953397..83953425,-!p1@BNC1!0.86!7.32!BNC1;;chr15:96873984..96873999,+!p3@NR2F2!0.85!47.59!NR2F2;;chr9:14314131..14314147,-!p2@NFIB!0.85!36.37!NFIB;;chr7:27196267..27196311,-!p1@HOXA7!0.85!6.10!HOXA7;;chr17:4890695..4890773,-!p2@CAMTA2!0.84!19.52!CAMTA2;;chr6:85473156..85473210,-!p2@TBX18!0.84!7.32!TBX18;;chr16:85932760..85932775,+!p1@IRF8!0.84!5.86!IRF8;;chr2:177001290..177001315,+!p1@HOXD3!0.84!5.86!HOXD3;;chr1:214161358..214161377,+!p3@PROX1!0.84!5.86!PROX1;;chr6:21597765..21597779,+!p2@SOX4!0.82!48.57!SOX4;;chr18:52989565..52989623,-!p9@TCF4!0.82!7.32!TCF4;;chr6:21593973..21593988,+!p1@SOX4!0.81!211.85!SOX4;;chr16:86600426..86600441,+!p1@FOXC2!0.81!14.40!FOXC2;;chr11:47279504..47279563,+!p1@NR1H3!0.81!13.18!NR1H3;;chr2:46602901..46602926,+!p7@EPAS1!0.80!7.32!EPAS1;;chr7:27205136..27205164,-!p1@HOXA9!0.80!5.37!HOXA9;;chr17:46688334..46688385,-!p1@HOXB7!0.79!7.81!HOXB7;;chr3:169381420..169381535,-!p1@MECOM!0.79!6.10!MECOM;;chr2:176987463..176987479,+!p2@HOXD9!0.79!5.13!HOXD9;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.61!MXD3;;chr16:8962202..8962222,-!p3@CARHSP1!0.78!9.27!CARHSP1;;chr1:156470494..156470505,-!p3@MEF2D!0.78!7.57!MEF2D;;chr19:49865646..49865718,-!p1@TEAD2!0.77!45.64!TEAD2;;chr17:6926381..6926392,+!p2@BCL6B!0.77!4.88!BCL6B;;chr8:55370884..55370896,+!p5@SOX17!0.77!4.88!SOX17;;chr22:19747040..19747054,+!p3@TBX1!0.77!4.88!TBX1;;chr11:65430554..65430579,-!p3@RELA!0.76!12.94!RELA;;chr20:42543506..42543549,+!p2@TOX2!0.76!12.20!TOX2;;chr20:62462566..62462631,-!p1@ZBTB46!0.76!9.52!ZBTB46;;chr2:46524878..46524891,+!p3@EPAS1!0.76!8.79!EPAS1;;chr12:80084137..80084165,-!p10@PAWR!0.76!6.35!PAWR;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.91!MAFF;;chr9:14083467..14083483,-!p4@NFIB!0.75!12.45!NFIB;;chr9:124991204..124991246,-!p1@LHX6!0.75!4.64!LHX6;;chr2:176987485..176987496,+!p3@HOXD9!0.75!4.64!HOXD9;;chr4:146401920..146401926,+!p14@SMAD1!0.75!4.64!SMAD1;;chr3:178789522..178789564,-!p2@ZMAT3!0.73!35.63!ZMAT3;;chr8:128749984..128750033,+!p4@MYC!0.73!17.33!MYC;;chr8:55370693..55370704,+!p4@SOX17!0.73!4.39!SOX17;;chr1:47696918..47696935,-!p6@TAL1!0.73!4.39!TAL1;;chr4:2263861..2263883,-!p2@MXD4!0.72!28.31!MXD4;;chr12:80084303..80084332,-!p1@PAWR!0.72!27.82!PAWR;;chr7:149470641..149470694,-!p1@ZNF467!0.72!21.23!ZNF467;;chr15:96874012..96874042,+!p2@NR2F2!0.71!41.49!NR2F2;;chr18:52988952..52988965,-!p23@TCF4!0.71!4.15!TCF4;;chr18:53068982..53068993,-!p20@TCF4!0.71!4.15!TCF4;;chr11:128457446..128457461,-!p4@ETS1!0.71!4.15!ETS1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.70!322.65!TAX1BP3;;chr19:57106647..57106686,+!p1@ZNF71!0.70!30.51!ZNF71;;chr2:85360499..85360598,+!p1@TCF7L1!0.70!25.63!TCF7L1;;chr10:3827389..3827408,-!p1@KLF6!0.69!341.69!KLF6;;chr19:45908292..45908374,-!p1@PPP1R13L!0.69!39.29!PPP1R13L;;chr8:106330696..106330719,+!p2@ZFPM2!0.69!5.13!ZFPM2;;chr5:92918956..92918969,+!p4@NR2F1!0.69!4.39!NR2F1;;chr10:94451574..94451587,+!p6@HHEX!0.69!3.90!HHEX;;chr9:16705069..16705086,-!p3@BNC2!0.69!3.90!BNC2;;chr2:16082155..16082169,+!p3@MYCN!0.69!3.90!MYCN;;chr2:177001336..177001357,+!p2@HOXD3!0.69!3.90!HOXD3;;chr17:45928443..45928473,-!p2@SP6!0.69!3.90!SP6;;chr19:45504688..45504782,+!p1@RELB!0.68!25.87!RELB;;chr1:23885981..23886002,-!p1@ID3!0.67!742.68!ID3;;chr19:35455110..35455149,-!p1@ZNF792!0.67!7.81!ZNF792;;chr17:46675558..46675577,-!p2@HOXB6!0.67!3.66!HOXB6;;chr20:590944..590960,-!p1@TCF15!0.67!3.66!TCF15;;chr7:27205106..27205134,-!p2@HOXA9!0.67!3.66!HOXA9;;chr11:128392273..128392308,-!p2@ETS1!0.66!17.08!ETS1;;chr19:13213662..13213686,-!p1@LYL1!0.66!5.61!LYL1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.66!4.64!L3MBTL4;;chr4:2263809..2263854,-!p1@MXD4!0.65!157.91!MXD4;;chr9:14314566..14314618,-!p1@NFIB!0.65!48.08!NFIB;;chr12:11802753..11802834,+!p2@ETV6!0.65!19.52!ETV6;;chr20:62670299..62670342,-!p8@ZNF512B!0.65!3.42!ZNF512B;;chr2:177001366..177001379,+!p4@HOXD3!0.65!3.42!HOXD3;;chr18:53177984..53178004,-!p17@TCF4!0.65!3.42!TCF4;;chr8:128748308..128748324,+!p2@MYC!0.64!109.83!MYC;;chr10:104155480..104155534,+!p2@NFKB2!0.64!25.38!NFKB2;;chr1:935467..935484,-!p1@HES4!0.64!17.33!HES4;;chr15:96876966..96877017,+!p12@NR2F2!0.64!5.13!NR2F2;;chr19:56154958..56155027,+!p1@ZNF581!0.63!127.40!ZNF581;;chr19:42759266..42759290,-!p1@ERF!0.63!123.25!ERF;;chr22:38598057..38598071,+!p3@MAFF!0.63!8.54!MAFF;;chr16:79634595..79634620,-!p2@MAF!0.63!6.59!MAF;;chr10:31288398..31288455,-!p2@ZNF438!0.63!3.90!ZNF438;;chr8:73921136..73921151,+!p2@TERF1!0.62!5.13!TERF1;;chr1:119530493..119530572,-!p1@TBX15!0.62!3.17!TBX15;;chr13:41240717..41240735,-!p2@FOXO1!0.61!25.14!FOXO1;;chr1:156470515..156470542,-!p2@MEF2D!0.61!19.04!MEF2D;;chr6:7108569..7108683,+!p3@RREB1!0.61!14.16!RREB1;;chr3:52001426..52001447,-!p3@PCBP4!0.61!10.01!PCBP4;;chr3:33482052..33482116,-!p2@UBP1!0.61!5.13!UBP1;;chr10:114711019..114711041,+!p7@TCF7L2!0.61!5.13!TCF7L2;;chr4:38665810..38665827,+!p1@KLF3!0.60!52.47!KLF3;;chr1:204042233..204042249,+!p1@SOX13!0.60!22.70!SOX13;;chr19:56152332..56152347,+!p4@ZNF580!0.60!7.57!ZNF580;;chr1:935398..935465,-!p2@HES4!0.60!6.83!HES4;;chr3:52001396..52001425,-!p4@PCBP4!0.60!5.86!PCBP4;;chr6:34204672..34204692,+!p1@HMGA1!0.59!401.73!HMGA1;;chr22:41697520..41697613,+!p1@ZC3H7B!0.59!201.35!ZC3H7B;;chr10:3827371..3827386,-!p2@KLF6!0.59!29.78!KLF6;;chr18:77160282..77160343,+!p2@NFATC1!0.59!21.48!NFATC1;;chr1:221053049..221053075,+!p3@HLX!0.59!5.61!HLX;;chr19:46800289..46800327,+!p2@HIF3A!0.59!2.93!HIF3A;;chr9:14314946..14314983,-!p8@NFIB!0.59!2.93!NFIB;;chr7:27170359..27170381,-!p1@HOXA4!0.59!2.93!HOXA4;;chr13:41240737..41240787,-!p1@FOXO1!0.58!41.00!FOXO1;;chr14:65569101..65569119,-!p3@MAX!0.58!10.49!MAX;;chr4:4861385..4861398,+!p1@MSX1!0.58!9.76!MSX1;;chr2:238536207..238536290,+!p2@LRRFIP1!0.57!32.70!LRRFIP1;;chr6:44233252..44233296,-!p1@NFKBIE!0.57!32.70!NFKBIE;;chr15:57210961..57211012,+!p3@TCF12!0.57!10.25!TCF12;;chr15:96874216..96874236,+!p13@NR2F2!0.57!4.64!NR2F2;;chr2:85980919..85980942,+!p4@ATOH8!0.57!2.93!ATOH8;;chr3:12329339..12329356,+!p5@PPARG!0.57!2.68!PPARG;;chr19:9732460..9732472,-!p2@ZNF561!0.57!2.68!ZNF561;;chr1:47697539..47697573,-!p3@TAL1!0.57!2.68!TAL1;;chr17:46675344..46675355,-!p9@HOXB6!0.57!2.68!HOXB6;;chr18:53089538..53089578,-!p14@TCF4!0.57!2.68!TCF4;;chr7:27153454..27153469,-!p2@HOXA3!0.57!2.68!HOXA3;;chr8:10588174..10588200,-!p3@SOX7!0.57!2.68!SOX7;;chr7:100076765..100076861,-!p1@TSC22D4!0.56!114.71!TSC22D4;;chr11:47236584..47236679,+!p1@DDB2!0.56!36.12!DDB2;;chr6:168227552..168227609,+!p1@MLLT4!0.56!26.60!MLLT4;;chr15:96874244..96874259,+!p5@NR2F2!0.56!7.32!NR2F2;;chr5:88179195..8817922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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002144;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
+|ffid_belonging_in_development=CL:0002546,CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor3.CNhs12024.11414-118F1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor3.CNhs12024.11414-118F1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor3.CNhs12024.11414-118F1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor3.CNhs12024.11414-118F1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor3.CNhs12024.11414-118F1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11414-118F1
 |is_a=EFO:0002091;;FF:0000050
 |is_obsolete=
+|library_id=CNhs12024
+|library_id_phase_based=2:CNhs12024
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11414
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GTGGCC.11414
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11414
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.GTGGCC.11414
 |name=Endothelial Cells - Microvascular, donor3
 |namespace=FANTOM5
@@ Line 45: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12024,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10006,,,
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@@ Line 59: / Line 82: @@
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@@ Line 81: / Line 106: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11414-118F1;search_select_hide=table117:FF:11414-118F1
 }}

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FF:11414-118F1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:59, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0