FF:11401-118D6: Difference between revisions

Latest revision as of 17:58, 4 June 2020

Name:	Fibroblast - Aortic Adventitial, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12011
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	aorta
dev stage	19 years old adult
sex	female
age	19
cell type	fibroblast
cell line	NA
company	Lonza
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005894

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12011		CAGE		DRX008242		DRR009114

Accession ID Hg19

Library id		BAM		CTSS
CNhs12011		DRZ000539		DRZ001924

Accession ID Hg38

Library id		BAM		CTSS
CNhs12011		DRZ011889		DRZ013274

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005894

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10012.GGTAGC		sRNA-Seq		DRX037202		DRR041568

Accession ID Hg19

Library id		BAM		CTSS
SRhi10012.GGTAGC		DRZ007210

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.163
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.323
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.0269
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.15
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.107
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0574
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.315
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0513
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0.132
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.148
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.358
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0301
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0582
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.132
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.309
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.233
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.132
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.542
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.384
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.443
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.443
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.622
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0672
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.69
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12011

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.469
MA0003.1	MA0003.1	0.649
MA0004.1	MA0004.1	0.0777
MA0006.1	MA0006.1	0.0878
MA0007.1	MA0007.1	0.811
MA0009.1	MA0009.1	0.968
MA0014.1	MA0014.1	0.487
MA0017.1	MA0017.1	0.424
MA0018.2	MA0018.2	2.63157e-6
MA0019.1	MA0019.1	0.618
MA0024.1	MA0024.1	0.129
MA0025.1	MA0025.1	0.0126
MA0027.1	MA0027.1	0.857
MA0028.1	MA0028.1	6.4828e-4
MA0029.1	MA0029.1	0.804
MA0030.1	MA0030.1	0.296
MA0031.1	MA0031.1	0.0851
MA0035.2	MA0035.2	0.437
MA0038.1	MA0038.1	0.253
MA0039.2	MA0039.2	0.13
MA0040.1	MA0040.1	0.818
MA0041.1	MA0041.1	0.442
MA0042.1	MA0042.1	0.771
MA0043.1	MA0043.1	3.84034e-6
MA0046.1	MA0046.1	0.0843
MA0047.2	MA0047.2	0.198
MA0048.1	MA0048.1	0.105
MA0050.1	MA0050.1	0.213
MA0051.1	MA0051.1	0.46
MA0052.1	MA0052.1	0.205
MA0055.1	MA0055.1	0.936
MA0057.1	MA0057.1	0.157
MA0058.1	MA0058.1	0.0107
MA0059.1	MA0059.1	0.264
MA0060.1	MA0060.1	0.0935
MA0061.1	MA0061.1	0.0938
MA0062.2	MA0062.2	6.13077e-8
MA0065.2	MA0065.2	0.11
MA0066.1	MA0066.1	0.305
MA0067.1	MA0067.1	0.00633
MA0068.1	MA0068.1	0.492
MA0069.1	MA0069.1	0.36
MA0070.1	MA0070.1	0.637
MA0071.1	MA0071.1	0.463
MA0072.1	MA0072.1	0.23
MA0073.1	MA0073.1	0.694
MA0074.1	MA0074.1	0.183
MA0076.1	MA0076.1	5.62862e-4
MA0077.1	MA0077.1	0.642
MA0078.1	MA0078.1	0.8
MA0079.2	MA0079.2	0.879
MA0080.2	MA0080.2	4.75607e-4
MA0081.1	MA0081.1	0.0348
MA0083.1	MA0083.1	0.0562
MA0084.1	MA0084.1	0.268
MA0087.1	MA0087.1	0.711
MA0088.1	MA0088.1	0.256
MA0090.1	MA0090.1	0.00658
MA0091.1	MA0091.1	0.41
MA0092.1	MA0092.1	0.389
MA0093.1	MA0093.1	0.0724
MA0099.2	MA0099.2	0.562
MA0100.1	MA0100.1	0.706
MA0101.1	MA0101.1	0.00803
MA0102.2	MA0102.2	0.0601
MA0103.1	MA0103.1	0.00248
MA0104.2	MA0104.2	0.00268
MA0105.1	MA0105.1	0.141
MA0106.1	MA0106.1	0.963
MA0107.1	MA0107.1	0.0329
MA0108.2	MA0108.2	3.02298e-5
MA0111.1	MA0111.1	0.322
MA0112.2	MA0112.2	0.403
MA0113.1	MA0113.1	0.603
MA0114.1	MA0114.1	0.0538
MA0115.1	MA0115.1	0.216
MA0116.1	MA0116.1	0.718
MA0117.1	MA0117.1	0.389
MA0119.1	MA0119.1	0.585
MA0122.1	MA0122.1	0.443
MA0124.1	MA0124.1	0.0648
MA0125.1	MA0125.1	0.546
MA0131.1	MA0131.1	0.277
MA0135.1	MA0135.1	0.927
MA0136.1	MA0136.1	1.37725e-6
MA0137.2	MA0137.2	0.994
MA0138.2	MA0138.2	0.994
MA0139.1	MA0139.1	0.634
MA0140.1	MA0140.1	0.548
MA0141.1	MA0141.1	0.35
MA0142.1	MA0142.1	0.507
MA0143.1	MA0143.1	0.79
MA0144.1	MA0144.1	0.606
MA0145.1	MA0145.1	0.783
MA0146.1	MA0146.1	0.632
MA0147.1	MA0147.1	0.0195
MA0148.1	MA0148.1	0.473
MA0149.1	MA0149.1	0.458
MA0150.1	MA0150.1	0.201
MA0152.1	MA0152.1	4.6135e-4
MA0153.1	MA0153.1	0.938
MA0154.1	MA0154.1	0.988
MA0155.1	MA0155.1	0.123
MA0156.1	MA0156.1	1.55046e-4
MA0157.1	MA0157.1	0.209
MA0159.1	MA0159.1	0.453
MA0160.1	MA0160.1	0.0499
MA0162.1	MA0162.1	0.326
MA0163.1	MA0163.1	0.409
MA0164.1	MA0164.1	0.853
MA0258.1	MA0258.1	0.772
MA0259.1	MA0259.1	0.0374

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12011

Novel motif	Logo	P-value
1	1	0.342
10	10	0.508
100	100	0.356
101	101	0.235
102	102	0.382
103	103	0.955
104	104	0.906
105	105	0.0838
106	106	0.22
107	107	0.0458
108	108	0.759
109	109	0.912
11	11	0.991
110	110	0.449
111	111	0.508
112	112	0.774
113	113	0.011
114	114	0.946
115	115	0.0184
116	116	0.0283
117	117	0.136
118	118	0.239
119	119	0.145
12	12	0.302
120	120	0.185
121	121	0.998
122	122	0.103
123	123	6.68814e-6
124	124	0.105
125	125	0.725
126	126	0.289
127	127	0.395
128	128	0.441
129	129	0.623
13	13	0.488
130	130	0.24
131	131	0.739
132	132	0.514
133	133	0.89
134	134	0.501
135	135	0.334
136	136	0.33
137	137	0.479
138	138	0.523
139	139	0.135
14	14	0.181
140	140	0.499
141	141	0.491
142	142	0.826
143	143	0.953
144	144	0.618
145	145	0.39
146	146	0.965
147	147	0.132
148	148	0.608
149	149	0.107
15	15	0.249
150	150	0.0563
151	151	0.561
152	152	0.0259
153	153	0.644
154	154	0.733
155	155	0.0319
156	156	0.189
157	157	0.278
158	158	0.00176
159	159	0.199
16	16	0.0362
160	160	0.738
161	161	0.991
162	162	0.615
163	163	0.702
164	164	0.746
165	165	0.771
166	166	0.0572
167	167	0.195
168	168	0.842
169	169	0.133
17	17	0.942
18	18	0.277
19	19	0.0345
2	2	0.207
20	20	0.239
21	21	0.051
22	22	0.315
23	23	0.38
24	24	0.519
25	25	0.236
26	26	0.375
27	27	0.532
28	28	0.264
29	29	0.812
3	3	0.907
30	30	0.249
31	31	0.691
32	32	1.74586e-13
33	33	0.886
34	34	0.633
35	35	0.196
36	36	0.025
37	37	0.746
38	38	0.477
39	39	0.223
4	4	0.564
40	40	0.18
41	41	0.111
42	42	0.338
43	43	0.66
44	44	0.0187
45	45	0.949
46	46	0.615
47	47	0.528
48	48	0.983
49	49	0.111
5	5	0.899
50	50	0.864
51	51	0.938
52	52	0.953
53	53	0.0465
54	54	0.737
55	55	0.79
56	56	0.513
57	57	0.158
58	58	0.219
59	59	0.205
6	6	0.662
60	60	0.684
61	61	0.375
62	62	0.69
63	63	0.691
64	64	0.575
65	65	0.532
66	66	0.888
67	67	0.924
68	68	0.9
69	69	0.485
7	7	0.0867
70	70	0.658
71	71	0.998
72	72	0.827
73	73	0.0557
74	74	0.0247
75	75	0.33
76	76	0.173
77	77	0.137
78	78	0.0194
79	79	0.0025
8	8	0.286
80	80	0.376
81	81	0.928
82	82	0.217
83	83	0.743
84	84	0.885
85	85	0.67
86	86	0.872
87	87	0.115
88	88	0.44
89	89	0.255
9	9	0.279
90	90	0.0805
91	91	0.784
92	92	0.31
93	93	0.483
94	94	0.555
95	95	0.394
96	96	0.677
97	97	0.624
98	98	0.0553
99	99	0.014

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12011

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000058 human fibroblast of the aortic adventitia sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000058 (human fibroblast of the aortic adventitia sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005894
-|accession_numbers=CAGE;DRX008242;DRR009114;DRZ000539;DRZ001924
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005894
+|accession_numbers=CAGE;DRX008242;DRR009114;DRZ000539;DRZ001924;DRZ011889;DRZ013274
+|accession_numbers_RNASeq=sRNA-Seq;DRX037202;DRR041568;DRZ007210
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.68!53.20!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.65!115.27!OSR1;;chr4:174451370..174451387,-!p1@HAND2!1.65!43.98!HAND2;;chr8:55370487..55370503,+!p1@SOX17!1.65!43.27!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!1.45!36.53!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.42!77.32!GATA6;;chr1:170633262..170633285,+!p3@PRRX1!1.37!25.89!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.37!22.34!HAND2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.57!ZBED1;;chr18:19749386..19749404,+!p2@GATA6!1.25!24.12!GATA6;;chr6:34204921..34204939,+!p3@HMGA1!1.24!482.35!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.17!70.93!CREB3L1;;chr9:132427972..132428056,+!p1@PRRX2!1.15!17.02!PRRX2;;chr15:67430351..67430366,+!p10@SMAD3!1.15!13.12!SMAD3;;chr1:170632959..170632987,+!p4@PRRX1!1.14!14.19!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.12!31.92!HIC1;;chr19:13134772..13134822,+!p2@NFIX!1.10!17.02!NFIX;;chr2:239756671..239756732,+!p1@TWIST2!1.08!35.47!TWIST2;;chr1:170632477..170632506,+!p6@PRRX1!1.08!10.99!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!1.07!10.64!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.64!TCF21;;chr2:239756739..239756755,+!p2@TWIST2!1.02!16.31!TWIST2;;chr2:68592406..68592424,+!p1@PLEK!1.02!9.58!PLEK;;chr16:86600426..86600441,+!p1@FOXC2!1.01!23.05!FOXC2;;chr12:66218255..66218304,+!p3@HMGA2!1.00!24.83!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.96!10.29!FOXF1;;chr11:46299539..46299620,+!p2@CREB3L1!0.93!13.12!CREB3L1;;chr15:57511609..57511651,+!p2@TCF12!0.93!12.77!TCF12;;chr8:72756637..72756664,-!p3@MSC!0.93!8.51!MSC;;chr9:132427883..132427951,+!p2@PRRX2!0.91!7.09!PRRX2;;chr11:65686802..65686818,+!p6@DRAP1!0.89!12.06!DRAP1;;chr6:1389789..1389821,+!p1@FOXF2!0.89!9.58!FOXF2;;chr1:170632439..170632465,+!p11@PRRX1!0.89!6.74!PRRX1;;chr15:67418119..67418162,+!p5@SMAD3!0.88!7.45!SMAD3;;chr19:50432453..50432468,+!p1@ATF5!0.87!376.66!ATF5;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.57!HMGA2;;chr15:67418047..67418093,+!p4@SMAD3!0.87!8.16!SMAD3;;chr19:13135582..13135600,+!p3@NFIX!0.87!6.38!NFIX;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.03!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!0.83!16.67!TWIST1;;chr18:19749517..19749531,+!p3@GATA6!0.83!10.64!GATA6;;chr11:65687362..65687436,+!p3@DRAP1!0.82!27.66!DRAP1;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.67!PRRX1;;chr4:174451350..174451363,-!p3@HAND2!0.82!5.67!HAND2;;chr11:65686732..65686756,+!p2@DRAP1!0.81!24.47!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.70!FOSL1;;chr8:72756667..72756736,-!p2@MSC!0.80!8.51!MSC;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.38!MECOM;;chr3:25470156..25470227,+!p2@RARB!0.80!5.32!RARB;;chr18:19749353..19749367,+!p4@GATA6!0.80!5.32!GATA6;;chr19:47523058..47523114,+!p1@NPAS1!0.80!5.32!NPAS1;;chr5:133450365..133450444,+!p1@TCF7!0.78!24.83!TCF7;;chr8:77593474..77593612,+!p1@ZFHX4!0.78!23.05!ZFHX4;;chr8:25902876..25902936,-!p1@EBF2!0.78!4.97!EBF2;;chr12:27485762..27485776,+!p3@ARNTL2!0.77!14.19!ARNTL2;;chr8:72756063..72756125,-!p1@MSC!0.76!10.29!MSC;;chr12:66218212..66218244,+!p5@HMGA2!0.76!7.09!HMGA2;;chr19:13106214..13106382,+!p1@NFIX!0.75!118.46!NFIX;;chr8:99956662..99956684,+!p1@OSR2!0.75!7.45!OSR2;;chr7:27142290..27142310,-!p1@HOXA2!0.75!4.61!HOXA2;;chr1:170632310..170632321,+!p15@PRRX1!0.75!4.61!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.75!4.61!RFX8;;chr5:72744594..72744609,-!p1@FOXD1!0.74!22.70!FOXD1;;chr20:6748325..6748352,+!p1@BMP2!0.74!6.74!BMP2;;chr7:19157043..19157088,-!p2@TWIST1!0.73!12.06!TWIST1;;chr11:61520075..61520136,+!p1@C11orf9!0.73!9.93!C11orf9;;chr9:14313893..14313908,-!p7@NFIB!0.72!6.38!NFIB;;chr19:50435736..50435781,+!p3@ATF5!0.72!6.03!ATF5;;chr19:46801639..46801699,+!p1@HIF3A!0.72!4.26!HIF3A;;chr1:170633245..170633256,+!p14@PRRX1!0.72!4.26!PRRX1;;chr15:80843484..80843499,+!p5@ARNT2!0.72!4.26!ARNT2;;chr10:131762504..131762555,-!p1@EBF3!0.72!4.26!EBF3;;chr11:65687222..65687240,+!p7@DRAP1!0.70!5.32!DRAP1;;chr7:44143925..44143970,+!p1@AEBP1!0.69!100.02!AEBP1;;chr19:45260775..45260838,+!p5@BCL3!0.69!5.32!BCL3;;chr1:170632762..170632786,+!p13@PRRX1!0.69!3.90!PRRX1;;chr7:27153454..27153469,-!p2@HOXA3!0.69!3.90!HOXA3;;chr11:125034605..125034636,+!p2@PKNOX2!0.69!3.90!PKNOX2;;chr12:54778471..54778528,-!p1@ZNF385A!0.69!3.90!ZNF385A;;chr8:106330696..106330719,+!p2@ZFPM2!0.68!4.97!ZFPM2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.67!42.21!GLIS2;;chr8:72756267..72756296,-!p4@MSC!0.67!5.67!MSC;;chr9:14314131..14314147,-!p2@NFIB!0.66!23.05!NFIB;;chr1:158979872..158979898,+!p3@IFI16!0.66!12.41!IFI16;;chr17:46655704..46655718,-!p2@HOXB4!0.66!5.67!HOXB4;;chr15:67430381..67430396,+!p21@SMAD3!0.66!3.55!SMAD3;;chr16:85932760..85932775,+!p1@IRF8!0.66!3.55!IRF8;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.55!PRRX1;;chr11:47400078..47400106,-!p1@SPI1!0.66!3.55!SPI1;;chr8:106330656..106330684,+!p1@ZFPM2!0.65!10.29!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.65!8.51!HOXB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.67!ZBTB38;;chr20:42543441..42543497,+!p1@TOX2!0.64!17.38!TOX2;;chr12:66218183..66218209,+!p4@HMGA2!0.64!7.09!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!0.63!35.82!HMGA2;;chr12:53614115..53614154,-!p1@RARG!0.63!20.22!RARG;;chr7:150945754..150945789,-!p2@SMARCD3!0.63!11.35!SMARCD3;;chr17:46621937..46621966,-!p2@HOXB2!0.63!9.93!HOXB2;;chr8:116681108..116681120,-!p9@TRPS1!0.63!4.26!TRPS1;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.28!DRAP1;;chr6:10412600..10412637,-!p1@TFAP2A!0.62!5.67!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.62!3.19!TBX20;;chr16:31076332..31076388,-!p3@ZNF668!0.62!3.19!ZNF668;;chr16:86600870..86600921,+!p2@FOXC2!0.62!3.19!FOXC2;;chr17:46132044..46132080,+!p4@NFE2L1!0.62!3.19!NFE2L1;;chr17:59477233..59477263,+!p1@TBX2!0.61!10.99!TBX2;;chr9:14314566..14314618,-!p1@NFIB!0.60!43.62!NFIB;;chr19:31840130..31840160,-!p2@TSHZ3!0.60!4.97!TSHZ3;;chr19:13136241..13136258,+!p7@NFIX!0.60!4.26!NFIX;;chr2:66662895..66662907,+!p3@MEIS1!0.60!3.90!MEIS1;;chr5:321810..321877,+!p1@AHRR!0.59!10.64!AHRR;;chr9:110250697..110250738,-!p2@KLF4!0.59!3.55!KLF4;;chr20:42543506..42543549,+!p2@TOX2!0.58!7.80!TOX2;;chr1:170632683..170632696,+!p12@PRRX1!0.58!2.84!PRRX1;;chr1:170633194..170633205,+!p18@PRRX1!0.58!2.84!PRRX1;;chr6:28321971..28321995,-!p1@ZNF323!0.58!2.84!ZNF323;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.84!TBX1;;chr2:66662396..66662407,+!p4@MEIS1!0.58!2.84!MEIS1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.58!2.84!SEBOX;;chr11:125034586..125034604,+!p3@PKNOX2!0.58!2.84!PKNOX2;;chr12:66218904..66218913,+!p11@HMGA2!0.58!2.84!HMGA2;;chr5:176738887..176738934,-!p1@MXD3!0.57!22.34!MXD3;;chr19:31840313..31840380,-!p1@TSHZ3!0.57!8.16!TSHZ3;;chr1:25256756..25256774,-!p1@RUNX3!0.57!5.67!RUNX3;;chr3:168864315..168864339,-!p2@MECOM!0.57!4.97!MECOM;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.61!HOXB2;;chr11:65687243..65687276,+!p8@DRAP1!0.57!3.90!DRAP1;;chr18:53068911..53068935,-!p4@TCF4!0.57!3.19!TCF4;;chr15:37390482..37390572,-!p7@MEIS2!0.56!3.90!MEIS2;;chr17:46675420..46675465,-!p3@HOXB6!0.56!3.19!HOXB6;;chr8:37553292..37553317,+!p1@ZNF703!0.55!75.54!ZNF703;;chr6:144329384..144329405,-!p1@PLAGL1!0.55!36.89!PLAGL1;;chr3:141087339..141087387,+!p2@ZBTB38!0.55!32.63!ZBTB38;;chr3:141087393..141087426,+!p3@ZBTB38!0.55!12.41!ZBTB38;;chr8:22550982..22550999,-!p1@EGR3!0.55!8.51!EGR3;;chr5:158526917..158526932,-!p1@EBF1!0.55!7.45!EBF1;;chr15:96875041..96875052,+!p17@NR2F2!0.54!3.90!NR2F2;;chr15:96881221..96881240,+!p19@NR2F2!0.54!3.55!NR2F2;;chr9:16870659..16870675,-!p2@BNC2!0.54!3.19!BNC2;;chr16:88519743..88519754,+!p2@ZFPM1!0.54!2.84!ZFPM1;;chr3:21792585..21792625,-!p2@ZNF385D!0.54!2.84!ZNF385D;;chr22:41763452..41763466,+!p2@TEF!0.54!2.48!TEF;;chr2:19558327..19558334,-!p2@OSR1!0.54!2.48!OSR1;;chr17:46655672..46655697,-!p3@HOXB4!0.54!2.48!HOXB4;;chr19:13135386..13135435,+!p4@NFIX!0.54!2.48!NFIX;;chr11:32457075..32457095,-!p1@WT1!0.54!2.48!WT1;;chr11:46299443..46299459,+!p4@CREB3L1!0.54!2.48!CREB3L1;;chr11:46333979..46333991,+!p7@CREB3L1!0.54!2.48!CREB3L1;;chr11:65688877..65688891,+!p13@DRAP1!0.54!2.48!DRAP1;;chr12:66357214..66357233,+!p13@HMGA2!0.54!2.48!HMGA2;;chr5:139492456..139492489,+!p7@PURA!0.54!2.48!PURA;;chr5:158527104..158527135,-!p4@EBF1!0.54!2.48!EBF1;;chr5:2751762..2751784,-!p1@IRX2!0.54!2.48!IRX2;;chr8:72756380..72756427,-!p8@MSC!0.54!2.48!MSC;;chr1:158979922..158979933,+!p13@IFI16!0.54!2.48!IFI16;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.48!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.54!2.48!PRRX1;;chr1:170633100..170633112,+!p19@PRRX1!0.54!2.48!PRRX1;;chr1:164528410..164528428,+!p1@PBX1!0.53!22.70!PBX1;;chr15:37392724..37392757,-!p1@MEIS2!0.53!13.48!MEIS2;;chr3:71007886..71007887,-!p8@FOXP1!0.53!9.58!FOXP1;;chr9:14083467..14083483,-!p4@NFIB!0.53!7.09!NFIB;;chr8:116681123..116681143,-!p4@TRPS1!0.53!5.32!TRPS1;;chr7:44143978..44143989,+!p2@AEBP1!0.53!4.97!AEBP1;;chr15:96869255..96869291,+!p6@NR2F2!0.53!4.97!NR2F2;;chr8:72756023..72756055,-!p6@MSC!0.53!3.19!MSC;;chr15:96873984..96873999,+!p3@NR2F2!0.52!21.63!NR2F2;;chr6:19837592..19837621,+!p1@ID4!0.52!18.09!ID4;;chr12:27485823..27485868,+!p2@ARNTL2!0.52!11.70!ARNTL2;;chr3:71630980..71631110,-!p3@FOXP1!0.52!9.93!FOXP1;;chr1:164528445..164528459,+!p2@PBX1!0.52!8.87!PBX1;;chr12:53625966..53626012,-!p2@RARG!0.52!7.45!RARG;;chr14:24837368..24837401,+!p1@NFATC4!0.52!6.38!NFATC4;;chr11:65667846..65667868,-!p1@FOSL1!0.51!78.03!FOSL1;;chr8:49833948..49833973,-!p2@SNAI2!0.51!18.44!SNAI2;;chr12:2986206..2986258,-!p2@FOXM1!0.51!17.38!FOXM1;;chr15:96874145..96874166,+!p7@NR2F2!0.51!4.97!NR2F2;;chr18:51750414..51750449,-!p5@MBD2!0.51!4.97!MBD2;;chr1:164528588..164528610,+!p8@PBX1!0.51!3.90!PBX1;;chr15:96869292..96869320,+!p15@NR2F2!0.51!3.55!NR2F2;;chr19:13136130..13136165,+!p6@NFIX!0.51!3.19!NFIX;;chr19:18391615..18391637,-!p5@JUND!0.51!3.19!JUND;;chr4:81118647..81118666,+!p1@PRDM8!0.51!3.19!PRDM8;;chr6:34204973..34204990,+!p4@HMGA1!0.50!37.59!HMGA1;;chr9:14314522..14314556,-!p3@NFIB!0.50!6.03!NFIB;;chr6:85473156..85473210,-!p2@TBX18!0.50!2.84!TBX18;;chr7:15726296..15726315,-!p1@MEOX2!0.50!2.13!MEOX2;;chr15:67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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002547;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor3.CNhs12011.11401-118D6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11401-118D6
 |is_a=EFO:0002091;;FF:0000058
 |is_obsolete=
 |library_id=CNhs12011
-|library_id_phase_based=1:CNhs12011
+|library_id_phase_based=2:CNhs12011
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11401
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GGTAGC.11401
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11401
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GGTAGC.11401
 |name=Fibroblast - Aortic Adventitial, donor3
 |namespace=FANTOM5
@@ Line 51: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12011,LSID837,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10012,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
 |repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0284850355458293,0,-0.25650326483503,0.0464438165539639,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0795046231804231,0,0,0,0,0,0.134869737260793,0,0,0.0998710437499885,0,0,0,0,0,0,0,0,0,0,0.131832994540557,0,0.0142595637006019,0.0518145262719184,0,0,0,0,0,0,0,0.0417014761574441,0,0,0,0.131832994540557,0,0.0733004554426475,0.131832994540557,0.135835272286246,0,0,0.217367148656347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0122778208095253,0,0,0,0,0,0,0.154851116205222,0.131832994540557,0,0,-0.0584468268118252,0.0465077203196139,0.0659164972702785,0.44300341480086,0,0,-0.0980353512377064,0.0438531132338087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.095415031822743,0,0,0,0.00863012996677134,0.0778063056852508,0,0,0,0,0,0
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@@ Line 67: / Line 82: @@
 |rna_tube_id=118D6
 |rna_weight_ug=41.5
+|rnaseq_library_id=SRhi10012.GGTAGC
 |sample_age=19
 |sample_category=primary cells
@@ Line 90: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11401-118D6;search_select_hide=table117:FF:11401-118D6
 }}

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FF:11401-118D6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:58, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0