FF:11379-118B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004702 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004702 | ||
|accession_numbers=CAGE;DRX008295;DRR009167;DRZ000592;DRZ001977;DRZ011942;DRZ013327 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037079;DRR041445;DRZ007087 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000254 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor3%2520%2528GEA15%2529.CNhs11903.11379-118B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor3%2520%2528GEA15%2529.CNhs11903.11379-118B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor3%2520%2528GEA15%2529.CNhs11903.11379-118B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor3%2520%2528GEA15%2529.CNhs11903.11379-118B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor3%2520%2528GEA15%2529.CNhs11903.11379-118B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11379-118B2 | |id=FF:11379-118B2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000254 | ||
|is_obsolete= | |||
|library_id=CNhs11903 | |||
|library_id_phase_based=2:CNhs11903 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11379 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.AGTTCC.11379 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11379 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.AGTTCC.11379 | |||
|name=Gingival epithelial cells, donor3 (GEA15) | |name=Gingival epithelial cells, donor3 (GEA15) | ||
|namespace= | |namespace= | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11903,LSID834,release010,COMPLETED | |profile_hcage=CNhs11903,LSID834,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.109291519004047,0,0.266636764426898,-0.282403560576942,0,0,0,0,0,0,0,0,0.269609549090433,0,0.478224721116318,0,0,-0.153323010348428,0,0,0,0.217350510001116,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.809511724961312,0,-0.000195724638380496,0,0,0,1.00765165315045,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0233716133798901,0,0,0,-0.0129123043816071,0,0,0,-0.0584468268118252,-0.0452592945248692,0,0.109512603169101,0.0547563015845505,0,-0.0980353512377064,-0.138477200800895,0,0,0,0.109512603169101,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0384311806227557,0.109512603169101,0,0,0.0620330361339777,0.228955999615859,0,0,0,0,0,0 | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 82: | ||
|rna_tube_id=118B2 | |rna_tube_id=118B2 | ||
|rna_weight_ug=6.76236 | |rna_weight_ug=6.76236 | ||
|rnaseq_library_id=SRhi10006.AGTTCC | |||
|sample_age=47 | |sample_age=47 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.08118246816803e-231!GO:0005737;cytoplasm;1.39553161187272e-203!GO:0043226;organelle;1.04377117736989e-173!GO:0043229;intracellular organelle;3.06797103235208e-173!GO:0043231;intracellular membrane-bound organelle;2.89213258687475e-159!GO:0043227;membrane-bound organelle;4.01789913164702e-159!GO:0044422;organelle part;5.41757971770742e-134!GO:0044446;intracellular organelle part;1.61123859735549e-132!GO:0044444;cytoplasmic part;1.39907521600325e-130!GO:0032991;macromolecular complex;5.86103761192756e-90!GO:0044238;primary metabolic process;4.0544020950637e-79!GO:0030529;ribonucleoprotein complex;1.88942256630473e-78!GO:0044237;cellular metabolic process;1.08934211781259e-77!GO:0005515;protein binding;5.93700224305085e-77!GO:0043170;macromolecule metabolic process;1.50837737581191e-71!GO:0003723;RNA binding;3.70460321188875e-63!GO:0043233;organelle lumen;7.24546072750339e-62!GO:0031974;membrane-enclosed lumen;7.24546072750339e-62!GO:0044428;nuclear part;3.49413832794577e-59!GO:0005739;mitochondrion;3.49413832794577e-59!GO:0019538;protein metabolic process;5.32668105828318e-59!GO:0005634;nucleus;4.99804952361627e-55!GO:0031090;organelle membrane;1.78349105228359e-52!GO:0044267;cellular protein metabolic process;1.2872624153337e-51!GO:0044260;cellular macromolecule metabolic process;2.8703650547076e-51!GO:0006412;translation;9.07076215236976e-51!GO:0016043;cellular component organization and biogenesis;2.97819035336498e-49!GO:0005840;ribosome;2.33340071696209e-48!GO:0015031;protein transport;8.25731689610468e-48!GO:0033036;macromolecule localization;2.904598797934e-47!GO:0043234;protein complex;1.45176283026107e-45!GO:0045184;establishment of protein localization;4.44806993738307e-44!GO:0008104;protein localization;5.64960443023846e-44!GO:0009058;biosynthetic process;4.85202990899822e-43!GO:0006396;RNA processing;1.54377789384831e-42!GO:0003735;structural constituent of ribosome;2.15045327180372e-42!GO:0005829;cytosol;4.27832361860741e-40!GO:0044429;mitochondrial part;8.1413190187382e-40!GO:0044249;cellular biosynthetic process;3.24174414895184e-39!GO:0009059;macromolecule biosynthetic process;6.26742562680249e-39!GO:0046907;intracellular transport;3.13202094417925e-38!GO:0031967;organelle envelope;3.62315079098661e-37!GO:0031975;envelope;8.6414714581572e-37!GO:0031981;nuclear lumen;1.06459452816801e-36!GO:0043228;non-membrane-bound organelle;1.79840017974704e-36!GO:0043232;intracellular non-membrane-bound organelle;1.79840017974704e-36!GO:0043283;biopolymer metabolic process;3.54300857010416e-36!GO:0033279;ribosomal subunit;1.52283151269663e-35!GO:0016071;mRNA metabolic process;1.93366246238211e-33!GO:0065003;macromolecular complex assembly;1.01614735335893e-32!GO:0006886;intracellular protein transport;6.32871278459089e-32!GO:0008380;RNA splicing;8.23181885394577e-31!GO:0010467;gene expression;1.99555434206055e-30!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.33139450042005e-30!GO:0022607;cellular component assembly;6.0912603002556e-29!GO:0006996;organelle organization and biogenesis;8.12656956396646e-29!GO:0006397;mRNA processing;5.60265623017634e-28!GO:0005740;mitochondrial envelope;6.47620779723161e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.75880974752229e-26!GO:0051641;cellular localization;1.62410559411852e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.74749068125356e-25!GO:0051649;establishment of cellular localization;1.75221519583257e-25!GO:0031966;mitochondrial membrane;3.44254718293082e-24!GO:0012505;endomembrane system;3.89160637021769e-24!GO:0044445;cytosolic part;3.47460911073094e-23!GO:0019866;organelle inner membrane;3.48079377592387e-22!GO:0000166;nucleotide binding;5.50171271024245e-22!GO:0005681;spliceosome;1.59149906871232e-21!GO:0005783;endoplasmic reticulum;1.65828190488034e-21!GO:0016462;pyrophosphatase activity;1.67506745103506e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.98371934304877e-21!GO:0005654;nucleoplasm;2.20642142796979e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.95959814495577e-21!GO:0005743;mitochondrial inner membrane;5.22564832869853e-21!GO:0017111;nucleoside-triphosphatase activity;6.0243748102738e-21!GO:0016874;ligase activity;1.69315417978355e-20!GO:0006119;oxidative phosphorylation;2.16851009740608e-20!GO:0022618;protein-RNA complex assembly;1.46894975065609e-19!GO:0006512;ubiquitin cycle;3.79927625786513e-19!GO:0015935;small ribosomal subunit;6.09772048501244e-19!GO:0043285;biopolymer catabolic process;6.37986493415071e-19!GO:0005794;Golgi apparatus;1.05693487123438e-18!GO:0006259;DNA metabolic process;1.48910817581264e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.08158480348255e-18!GO:0048770;pigment granule;2.75636643103881e-18!GO:0042470;melanosome;2.75636643103881e-18!GO:0007049;cell cycle;3.71658247637455e-18!GO:0019941;modification-dependent protein catabolic process;4.53339981434816e-18!GO:0043632;modification-dependent macromolecule catabolic process;4.53339981434816e-18!GO:0006457;protein folding;4.8458133651875e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.16645826230077e-18!GO:0044257;cellular protein catabolic process;5.75430322206356e-18!GO:0044265;cellular macromolecule catabolic process;9.418531016304e-18!GO:0015934;large ribosomal subunit;1.52317717572929e-17!GO:0005730;nucleolus;1.53877906997943e-17!GO:0044451;nucleoplasm part;2.7701431022245e-17!GO:0044432;endoplasmic reticulum part;2.94218319634171e-17!GO:0009057;macromolecule catabolic process;2.95633423791026e-17!GO:0030163;protein catabolic process;3.06013315350135e-17!GO:0006605;protein targeting;4.55882516713643e-17!GO:0031980;mitochondrial lumen;4.68550471123044e-17!GO:0005759;mitochondrial matrix;4.68550471123044e-17!GO:0043412;biopolymer modification;5.47928385697208e-17!GO:0012501;programmed cell death;5.69611129059708e-17!GO:0044455;mitochondrial membrane part;6.59704092191781e-17!GO:0006915;apoptosis;1.02246970881723e-16!GO:0000502;proteasome complex (sensu Eukaryota);6.77533017702291e-16!GO:0032553;ribonucleotide binding;7.51291484680803e-16!GO:0032555;purine ribonucleotide binding;7.51291484680803e-16!GO:0017076;purine nucleotide binding;7.7884283431893e-16!GO:0006464;protein modification process;1.39192831801719e-15!GO:0044248;cellular catabolic process;1.48429574865654e-15!GO:0008219;cell death;1.89220939753228e-15!GO:0016265;death;1.89220939753228e-15!GO:0016192;vesicle-mediated transport;2.23898815937262e-15!GO:0008134;transcription factor binding;3.51639824622553e-15!GO:0008135;translation factor activity, nucleic acid binding;1.76857388089167e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.93739799706812e-14!GO:0048193;Golgi vesicle transport;3.88130428886163e-14!GO:0005746;mitochondrial respiratory chain;4.39656203612814e-14!GO:0051186;cofactor metabolic process;5.90207315744115e-14!GO:0043687;post-translational protein modification;6.10164246755981e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.72271933131237e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.15942542909618e-13!GO:0005761;mitochondrial ribosome;1.17778364941667e-13!GO:0000313;organellar ribosome;1.17778364941667e-13!GO:0005789;endoplasmic reticulum membrane;2.9635400941801e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.13456610845044e-13!GO:0003954;NADH dehydrogenase activity;3.13456610845044e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.13456610845044e-13!GO:0005524;ATP binding;4.3797440164028e-13!GO:0006413;translational initiation;5.57936278953346e-13!GO:0022402;cell cycle process;6.21927379504603e-13!GO:0051082;unfolded protein binding;8.08852395499394e-13!GO:0032559;adenyl ribonucleotide binding;8.68543846164357e-13!GO:0030554;adenyl nucleotide binding;1.2090843469016e-12!GO:0043067;regulation of programmed cell death;1.22315101295392e-12!GO:0042981;regulation of apoptosis;1.3665421556287e-12!GO:0008639;small protein conjugating enzyme activity;1.62156870136676e-12!GO:0019787;small conjugating protein ligase activity;2.22395955692316e-12!GO:0003743;translation initiation factor activity;2.50894189196738e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.88462241435194e-12!GO:0006461;protein complex assembly;2.9723456882029e-12!GO:0004842;ubiquitin-protein ligase activity;2.9723456882029e-12!GO:0003676;nucleic acid binding;2.98973969190297e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.21435012957289e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.28689510550861e-12!GO:0000278;mitotic cell cycle;3.49968771791317e-12!GO:0005635;nuclear envelope;5.84211545199171e-12!GO:0042254;ribosome biogenesis and assembly;8.36173328451241e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;9.98326243293653e-12!GO:0000375;RNA splicing, via transesterification reactions;9.98326243293653e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.98326243293653e-12!GO:0006913;nucleocytoplasmic transport;1.47431682942607e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.47431682942607e-11!GO:0042773;ATP synthesis coupled electron transport;1.47431682942607e-11!GO:0006732;coenzyme metabolic process;1.47648403004973e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.91212280550053e-11!GO:0045271;respiratory chain complex I;1.91212280550053e-11!GO:0005747;mitochondrial respiratory chain complex I;1.91212280550053e-11!GO:0009055;electron carrier activity;3.30047356143241e-11!GO:0051169;nuclear transport;3.30047356143241e-11!GO:0006974;response to DNA damage stimulus;3.30047356143241e-11!GO:0016881;acid-amino acid ligase activity;3.40339459163587e-11!GO:0006446;regulation of translational initiation;3.50118914105372e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.10610512827555e-11!GO:0016070;RNA metabolic process;6.90359923420796e-11!GO:0008565;protein transporter activity;9.93436838270981e-11!GO:0031965;nuclear membrane;1.25670974223713e-10!GO:0009056;catabolic process;1.51817010241678e-10!GO:0016887;ATPase activity;2.40703180416697e-10!GO:0042623;ATPase activity, coupled;2.5479174502576e-10!GO:0016604;nuclear body;3.01721851788238e-10!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.24424953471379e-10!GO:0005793;ER-Golgi intermediate compartment;4.0202273375659e-10!GO:0051246;regulation of protein metabolic process;5.80571769246576e-10!GO:0044453;nuclear membrane part;5.85771408727435e-10!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.25328751939999e-10!GO:0009259;ribonucleotide metabolic process;1.11667841871971e-09!GO:0004386;helicase activity;1.30688672659773e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.68938349777473e-09!GO:0000074;regulation of progression through cell cycle;1.86544030655937e-09!GO:0051726;regulation of cell cycle;1.9883520161187e-09!GO:0017038;protein import;2.0377208894286e-09!GO:0005768;endosome;2.43395909372731e-09!GO:0006399;tRNA metabolic process;2.76806999144379e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.79217514813385e-09!GO:0006163;purine nucleotide metabolic process;4.50686418175528e-09!GO:0048523;negative regulation of cellular process;4.50686418175528e-09!GO:0044431;Golgi apparatus part;4.63096567180421e-09!GO:0043069;negative regulation of programmed cell death;5.70500049285504e-09!GO:0003712;transcription cofactor activity;5.70500049285504e-09!GO:0048475;coated membrane;6.55113803882305e-09!GO:0030117;membrane coat;6.55113803882305e-09!GO:0030120;vesicle coat;6.76595065975736e-09!GO:0030662;coated vesicle membrane;6.76595065975736e-09!GO:0003924;GTPase activity;7.33635347136887e-09!GO:0009150;purine ribonucleotide metabolic process;7.70450926581931e-09!GO:0006281;DNA repair;8.99195334601248e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.57813627393833e-09!GO:0009141;nucleoside triphosphate metabolic process;1.05393040272246e-08!GO:0000087;M phase of mitotic cell cycle;1.50868327635487e-08!GO:0008026;ATP-dependent helicase activity;1.57033256368512e-08!GO:0043066;negative regulation of apoptosis;1.59429431716174e-08!GO:0005643;nuclear pore;1.61032816520455e-08!GO:0009260;ribonucleotide biosynthetic process;2.12217090122408e-08!GO:0016607;nuclear speck;2.18876070634793e-08!GO:0007067;mitosis;2.49017530501241e-08!GO:0006164;purine nucleotide biosynthetic process;3.21055605165923e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.21055605165923e-08!GO:0015986;ATP synthesis coupled proton transport;3.66192722039012e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.66192722039012e-08!GO:0051188;cofactor biosynthetic process;4.25842301751983e-08!GO:0016787;hydrolase activity;4.31255437160743e-08!GO:0009719;response to endogenous stimulus;4.38241929472958e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.06166884415102e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.44194793905434e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.26826678763784e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.26826678763784e-08!GO:0006916;anti-apoptosis;7.121493501916e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.79395661570497e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.79395661570497e-08!GO:0050794;regulation of cellular process;8.20136311493454e-08!GO:0048519;negative regulation of biological process;9.0332151917225e-08!GO:0048522;positive regulation of cellular process;9.18813681221896e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.41574031948752e-08!GO:0032446;protein modification by small protein conjugation;1.1068756794514e-07!GO:0007005;mitochondrion organization and biogenesis;1.39308470181035e-07!GO:0006364;rRNA processing;1.41265256964493e-07!GO:0016567;protein ubiquitination;1.53760630289036e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.57652728652036e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.57652728652036e-07!GO:0022403;cell cycle phase;1.59935103287308e-07!GO:0016072;rRNA metabolic process;1.79204279855471e-07!GO:0065002;intracellular protein transport across a membrane;1.79204279855471e-07!GO:0051301;cell division;2.03493228509635e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.3253222279973e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.3253222279973e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.3253222279973e-07!GO:0007243;protein kinase cascade;2.38319335387771e-07!GO:0051276;chromosome organization and biogenesis;2.42718023878908e-07!GO:0046034;ATP metabolic process;3.00056012125507e-07!GO:0043038;amino acid activation;3.24910249877437e-07!GO:0006418;tRNA aminoacylation for protein translation;3.24910249877437e-07!GO:0043039;tRNA aminoacylation;3.24910249877437e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.45746758061e-07!GO:0000139;Golgi membrane;3.72221308122039e-07!GO:0051170;nuclear import;3.89444752806281e-07!GO:0006366;transcription from RNA polymerase II promoter;4.30466755810119e-07!GO:0019829;cation-transporting ATPase activity;4.34105045549794e-07!GO:0050657;nucleic acid transport;4.65462664290277e-07!GO:0051236;establishment of RNA localization;4.65462664290277e-07!GO:0050658;RNA transport;4.65462664290277e-07!GO:0046930;pore complex;4.74333353390129e-07!GO:0006403;RNA localization;5.41120569514741e-07!GO:0006754;ATP biosynthetic process;6.11877596387896e-07!GO:0006753;nucleoside phosphate metabolic process;6.11877596387896e-07!GO:0009117;nucleotide metabolic process;7.32622421077455e-07!GO:0006606;protein import into nucleus;8.23147895031924e-07!GO:0009108;coenzyme biosynthetic process;9.42269720652069e-07!GO:0009060;aerobic respiration;9.42269720652069e-07!GO:0006323;DNA packaging;9.78502171719888e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.82607540148104e-07!GO:0005694;chromosome;1.114049872376e-06!GO:0006793;phosphorus metabolic process;1.15465625005193e-06!GO:0006796;phosphate metabolic process;1.15465625005193e-06!GO:0043623;cellular protein complex assembly;1.16599456867487e-06!GO:0006260;DNA replication;1.42348608278286e-06!GO:0016740;transferase activity;1.71274357478512e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.9085697073795e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.0824635927132e-06!GO:0031252;leading edge;2.26514174559791e-06!GO:0009967;positive regulation of signal transduction;2.42584930876381e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.77086416588368e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.83734172714878e-06!GO:0015630;microtubule cytoskeleton;3.40678322896387e-06!GO:0044440;endosomal part;3.4776229400052e-06!GO:0010008;endosome membrane;3.4776229400052e-06!GO:0042802;identical protein binding;3.52288124645476e-06!GO:0016491;oxidoreductase activity;3.70032899078126e-06!GO:0016779;nucleotidyltransferase activity;3.90115611111913e-06!GO:0006752;group transfer coenzyme metabolic process;4.05061042385367e-06!GO:0005525;GTP binding;5.1766089134886e-06!GO:0000245;spliceosome assembly;6.49254623548951e-06!GO:0005798;Golgi-associated vesicle;6.67781189589963e-06!GO:0016310;phosphorylation;7.80060302611652e-06!GO:0000279;M phase;8.01346466271975e-06!GO:0005773;vacuole;8.40401491280125e-06!GO:0005770;late endosome;8.61130172283184e-06!GO:0031988;membrane-bound vesicle;8.75753310183184e-06!GO:0045333;cellular respiration;8.98594896448028e-06!GO:0016023;cytoplasmic membrane-bound vesicle;9.87316935005446e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.03129983563124e-05!GO:0006099;tricarboxylic acid cycle;1.12011890278718e-05!GO:0046356;acetyl-CoA catabolic process;1.12011890278718e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.27413058336052e-05!GO:0006613;cotranslational protein targeting to membrane;1.2935207162128e-05!GO:0045259;proton-transporting ATP synthase complex;1.31753427352931e-05!GO:0004298;threonine endopeptidase activity;1.39534266522891e-05!GO:0048518;positive regulation of biological process;1.40332802382623e-05!GO:0051028;mRNA transport;1.4430400894947e-05!GO:0044427;chromosomal part;1.70338924697174e-05!GO:0000151;ubiquitin ligase complex;2.35432381345947e-05!GO:0006084;acetyl-CoA metabolic process;2.41498584313702e-05!GO:0003724;RNA helicase activity;2.56180691164627e-05!GO:0016044;membrane organization and biogenesis;2.76804568929933e-05!GO:0007010;cytoskeleton organization and biogenesis;2.86396747017159e-05!GO:0008654;phospholipid biosynthetic process;2.97295662499076e-05!GO:0051187;cofactor catabolic process;3.18532240703181e-05!GO:0000323;lytic vacuole;3.45451890140983e-05!GO:0005764;lysosome;3.45451890140983e-05!GO:0065009;regulation of a molecular function;3.66306014445235e-05!GO:0005788;endoplasmic reticulum lumen;3.90314046141367e-05!GO:0019899;enzyme binding;3.92643645217966e-05!GO:0030118;clathrin coat;4.67944591779362e-05!GO:0005813;centrosome;5.42887054053211e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.51545311253543e-05!GO:0050789;regulation of biological process;5.6624846683967e-05!GO:0045454;cell redox homeostasis;5.6624846683967e-05!GO:0043065;positive regulation of apoptosis;6.00702256844391e-05!GO:0030036;actin cytoskeleton organization and biogenesis;6.02451830342298e-05!GO:0031982;vesicle;6.02451830342298e-05!GO:0005762;mitochondrial large ribosomal subunit;6.15818061806381e-05!GO:0000315;organellar large ribosomal subunit;6.15818061806381e-05!GO:0009109;coenzyme catabolic process;6.84796343414341e-05!GO:0016126;sterol biosynthetic process;6.84796343414341e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.07939722246866e-05!GO:0048468;cell development;7.16151458738838e-05!GO:0045786;negative regulation of progression through cell cycle;7.23899414397223e-05!GO:0043068;positive regulation of programmed cell death;7.78650922012807e-05!GO:0031410;cytoplasmic vesicle;7.79953017445207e-05!GO:0000785;chromatin;7.9145745666727e-05!GO:0065004;protein-DNA complex assembly;8.22783349672913e-05!GO:0016568;chromatin modification;8.29974446801929e-05!GO:0031968;organelle outer membrane;8.35086486092385e-05!GO:0001726;ruffle;8.42951868621406e-05!GO:0003697;single-stranded DNA binding;8.60147189752123e-05!GO:0005667;transcription factor complex;9.25659226029999e-05!GO:0030867;rough endoplasmic reticulum membrane;9.29661099051877e-05!GO:0008632;apoptotic program;9.75669633342959e-05!GO:0032561;guanyl ribonucleotide binding;9.75669633342959e-05!GO:0019001;guanyl nucleotide binding;9.75669633342959e-05!GO:0003714;transcription corepressor activity;0.000108739368558037!GO:0048471;perinuclear region of cytoplasm;0.000118026638142747!GO:0003713;transcription coactivator activity;0.000118361787719481!GO:0006612;protein targeting to membrane;0.000119706577048326!GO:0019867;outer membrane;0.000124343310575348!GO:0005769;early endosome;0.000140721913842528!GO:0016564;transcription repressor activity;0.000150501034440514!GO:0043021;ribonucleoprotein binding;0.000160607584747617!GO:0043566;structure-specific DNA binding;0.00016497699543325!GO:0016853;isomerase activity;0.000185803329246695!GO:0006333;chromatin assembly or disassembly;0.000194844422551093!GO:0031324;negative regulation of cellular metabolic process;0.00020057647458993!GO:0005815;microtubule organizing center;0.000231642142822904!GO:0005741;mitochondrial outer membrane;0.000244420423000137!GO:0000314;organellar small ribosomal subunit;0.000245192153842649!GO:0005763;mitochondrial small ribosomal subunit;0.000245192153842649!GO:0005885;Arp2/3 protein complex;0.000249177440237947!GO:0003899;DNA-directed RNA polymerase activity;0.000252506114166193!GO:0005905;coated pit;0.000254042367821093!GO:0007264;small GTPase mediated signal transduction;0.000271438839113516!GO:0030658;transport vesicle membrane;0.000273819898616078!GO:0030119;AP-type membrane coat adaptor complex;0.000280153523716609!GO:0030029;actin filament-based process;0.000336590300917332!GO:0005819;spindle;0.000348212126297707!GO:0008092;cytoskeletal protein binding;0.000356066641841387!GO:0051427;hormone receptor binding;0.000430764504948473!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000443325769740421!GO:0051252;regulation of RNA metabolic process;0.000471007859363593!GO:0030131;clathrin adaptor complex;0.000474776257119209!GO:0009892;negative regulation of metabolic process;0.000513741126661036!GO:0051168;nuclear export;0.000533445832334219!GO:0005856;cytoskeleton;0.000579706338960991!GO:0005791;rough endoplasmic reticulum;0.000601025899894507!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000621896070587457!GO:0008250;oligosaccharyl transferase complex;0.00063566533774359!GO:0030132;clathrin coat of coated pit;0.000672447289729964!GO:0044452;nucleolar part;0.000696820786490369!GO:0008186;RNA-dependent ATPase activity;0.000713387158838339!GO:0033116;ER-Golgi intermediate compartment membrane;0.000718781749350963!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000726687511777662!GO:0005048;signal sequence binding;0.000737291448147861!GO:0008610;lipid biosynthetic process;0.000738842810868888!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00074781062706024!GO:0016859;cis-trans isomerase activity;0.000755820481780575!GO:0006091;generation of precursor metabolites and energy;0.000776080340716645!GO:0035257;nuclear hormone receptor binding;0.000789379292159237!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000789379292159237!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0007971575449991!GO:0006917;induction of apoptosis;0.000854968406213948!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000873682825632762!GO:0009165;nucleotide biosynthetic process;0.000905350054222506!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000955235515032944!GO:0051789;response to protein stimulus;0.000967865745942328!GO:0006986;response to unfolded protein;0.000967865745942328!GO:0016197;endosome transport;0.00100328257182183!GO:0030660;Golgi-associated vesicle membrane;0.00100328257182183!GO:0004576;oligosaccharyl transferase activity;0.00100548626993985!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00102958010301909!GO:0006695;cholesterol biosynthetic process;0.00103865922259146!GO:0051920;peroxiredoxin activity;0.00104440534880942!GO:0019843;rRNA binding;0.00104973080610391!GO:0016563;transcription activator activity;0.00106552673153909!GO:0030125;clathrin vesicle coat;0.00112015034774061!GO:0030665;clathrin coated vesicle membrane;0.00112015034774061!GO:0006402;mRNA catabolic process;0.00112520430219599!GO:0006417;regulation of translation;0.00112528501904081!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00114831460955579!GO:0012502;induction of programmed cell death;0.00120895258514213!GO:0051329;interphase of mitotic cell cycle;0.00123840234004819!GO:0007006;mitochondrial membrane organization and biogenesis;0.00124908804976832!GO:0050790;regulation of catalytic activity;0.00128340108626152!GO:0030133;transport vesicle;0.00135920739064661!GO:0006950;response to stress;0.00150373649141376!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0015070973391421!GO:0006626;protein targeting to mitochondrion;0.00157512627704934!GO:0003729;mRNA binding;0.00158887310553075!GO:0031072;heat shock protein binding;0.00163695712967923!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00169237336632833!GO:0015399;primary active transmembrane transporter activity;0.00169237336632833!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0017235936091501!GO:0000059;protein import into nucleus, docking;0.00174291864031622!GO:0004004;ATP-dependent RNA helicase activity;0.00183251775638439!GO:0018196;peptidyl-asparagine modification;0.00184637753813381!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00184637753813381!GO:0043681;protein import into mitochondrion;0.00189232587769022!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00194292911309879!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00194292911309879!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00194292911309879!GO:0046467;membrane lipid biosynthetic process;0.00197985881765008!GO:0051325;interphase;0.00218526312540916!GO:0008139;nuclear localization sequence binding;0.00224548163017874!GO:0043488;regulation of mRNA stability;0.00234940236503403!GO:0043487;regulation of RNA stability;0.00234940236503403!GO:0006383;transcription from RNA polymerase III promoter;0.00245167168029631!GO:0006839;mitochondrial transport;0.00256007131656931!GO:0006979;response to oxidative stress;0.00268732903549379!GO:0048500;signal recognition particle;0.00268944913217893!GO:0008243;plasminogen activator activity;0.00270392270664679!GO:0008033;tRNA processing;0.00272985524097891!GO:0008234;cysteine-type peptidase activity;0.00277526947204663!GO:0006401;RNA catabolic process;0.00277526947204663!GO:0051101;regulation of DNA binding;0.00279121406875922!GO:0051098;regulation of binding;0.00287756828165046!GO:0046474;glycerophospholipid biosynthetic process;0.00292681769963335!GO:0000075;cell cycle checkpoint;0.00295725440367885!GO:0006414;translational elongation;0.00345450830566883!GO:0030176;integral to endoplasmic reticulum membrane;0.00349783909617861!GO:0004674;protein serine/threonine kinase activity;0.00353164610978257!GO:0030663;COPI coated vesicle membrane;0.00354679634258704!GO:0030126;COPI vesicle coat;0.00354679634258704!GO:0030134;ER to Golgi transport vesicle;0.00357226884471274!GO:0045045;secretory pathway;0.00368510524519026!GO:0016481;negative regulation of transcription;0.00384462587563429!GO:0016363;nuclear matrix;0.00392901764188897!GO:0046489;phosphoinositide biosynthetic process;0.00424454099049298!GO:0007088;regulation of mitosis;0.00429067059491238!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00429647944952847!GO:0051128;regulation of cellular component organization and biogenesis;0.00429647944952847!GO:0005149;interleukin-1 receptor binding;0.00440030746587179!GO:0030880;RNA polymerase complex;0.00449621883445129!GO:0008047;enzyme activator activity;0.00457281433793771!GO:0045893;positive regulation of transcription, DNA-dependent;0.00464595444557139!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00480999437520722!GO:0006334;nucleosome assembly;0.00480999437520722!GO:0015631;tubulin binding;0.00495918336469349!GO:0007242;intracellular signaling cascade;0.0049967930668918!GO:0003690;double-stranded DNA binding;0.00526650520243988!GO:0006891;intra-Golgi vesicle-mediated transport;0.00533095853154253!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00558098374816293!GO:0045047;protein targeting to ER;0.00558098374816293!GO:0031326;regulation of cellular biosynthetic process;0.00559141987780757!GO:0008637;apoptotic mitochondrial changes;0.00562969298203708!GO:0009889;regulation of biosynthetic process;0.00568247991197228!GO:0015992;proton transport;0.0058515873222731!GO:0030031;cell projection biogenesis;0.00607225611024867!GO:0006818;hydrogen transport;0.00607225611024867!GO:0030127;COPII vesicle coat;0.00607225611024867!GO:0012507;ER to Golgi transport vesicle membrane;0.00607225611024867!GO:0017166;vinculin binding;0.00630287447305822!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0063522985237014!GO:0008312;7S RNA binding;0.00643843877687998!GO:0016125;sterol metabolic process;0.00658940848031372!GO:0008361;regulation of cell size;0.00672914186361451!GO:0006897;endocytosis;0.00673291145938394!GO:0010324;membrane invagination;0.00673291145938394!GO:0015980;energy derivation by oxidation of organic compounds;0.00676511992332779!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00702478701201072!GO:0043492;ATPase activity, coupled to movement of substances;0.00711948538692594!GO:0030137;COPI-coated vesicle;0.00723181279838537!GO:0031497;chromatin assembly;0.00726389604869643!GO:0050750;low-density lipoprotein receptor binding;0.00726389604869643!GO:0035258;steroid hormone receptor binding;0.00730076812385443!GO:0008629;induction of apoptosis by intracellular signals;0.00756682593472123!GO:0050662;coenzyme binding;0.00758693701135216!GO:0005874;microtubule;0.0077681664067994!GO:0006611;protein export from nucleus;0.00788198641513679!GO:0032984;macromolecular complex disassembly;0.00788198641513679!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00797859933927693!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00812848159157342!GO:0030659;cytoplasmic vesicle membrane;0.00820126408862203!GO:0045941;positive regulation of transcription;0.008268461319418!GO:0043624;cellular protein complex disassembly;0.008268461319418!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00838023931986357!GO:0003711;transcription elongation regulator activity;0.00860147957886654!GO:0030027;lamellipodium;0.00887174388797553!GO:0065007;biological regulation;0.00899994126624423!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00907494154053965!GO:0000428;DNA-directed RNA polymerase complex;0.00907494154053965!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00913704188897001!GO:0016049;cell growth;0.00941353861860715!GO:0006650;glycerophospholipid metabolic process;0.00954212192584315!GO:0007051;spindle organization and biogenesis;0.00978008913619265!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0102438930465572!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0103671406937988!GO:0043022;ribosome binding;0.0103932865845276!GO:0007265;Ras protein signal transduction;0.0104294676343436!GO:0022406;membrane docking;0.0106713761361961!GO:0048278;vesicle docking;0.0106713761361961!GO:0051087;chaperone binding;0.0106855055218089!GO:0046483;heterocycle metabolic process;0.0111051706450754!GO:0051052;regulation of DNA metabolic process;0.0111051706450754!GO:0003684;damaged DNA binding;0.0111717492562692!GO:0006595;polyamine metabolic process;0.0112409147024219!GO:0007034;vacuolar transport;0.0113497752194637!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0116001167605618!GO:0000049;tRNA binding;0.011760298927332!GO:0022411;cellular component disassembly;0.0120979647798539!GO:0016251;general RNA polymerase II transcription factor activity;0.0128127472698317!GO:0043241;protein complex disassembly;0.0131387524041828!GO:0045334;clathrin-coated endocytic vesicle;0.0131387524041828!GO:0000082;G1/S transition of mitotic cell cycle;0.0133315828449923!GO:0030521;androgen receptor signaling pathway;0.0135957791192044!GO:0048487;beta-tubulin binding;0.0135957791192044!GO:0009966;regulation of signal transduction;0.0137423776080416!GO:0031625;ubiquitin protein ligase binding;0.0137423776080416!GO:0046822;regulation of nucleocytoplasmic transport;0.0137550449641788!GO:0006261;DNA-dependent DNA replication;0.0137550449641788!GO:0006302;double-strand break repair;0.0140106016526574!GO:0006352;transcription initiation;0.0140534153974685!GO:0030032;lamellipodium biogenesis;0.0142430691631587!GO:0005832;chaperonin-containing T-complex;0.0144395859838392!GO:0001836;release of cytochrome c from mitochondria;0.0145840235454686!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0147940853527153!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0147940853527153!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.015061740834383!GO:0031902;late endosome membrane;0.0151166193260664!GO:0044433;cytoplasmic vesicle part;0.015120476826544!GO:0005862;muscle thin filament tropomyosin;0.0151507996750552!GO:0006509;membrane protein ectodomain proteolysis;0.0152268463714606!GO:0033619;membrane protein proteolysis;0.0152268463714606!GO:0001558;regulation of cell growth;0.015384526539152!GO:0030384;phosphoinositide metabolic process;0.0153903311016361!GO:0005869;dynactin complex;0.0153995745005742!GO:0051336;regulation of hydrolase activity;0.0158350219603936!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0158666663681188!GO:0006892;post-Golgi vesicle-mediated transport;0.0159198163421297!GO:0046519;sphingoid metabolic process;0.0160493504935174!GO:0006904;vesicle docking during exocytosis;0.0164105579041834!GO:0030057;desmosome;0.016630879259602!GO:0005774;vacuolar membrane;0.016630879259602!GO:0019222;regulation of metabolic process;0.0170038398677559!GO:0006289;nucleotide-excision repair;0.0170077908287239!GO:0009112;nucleobase metabolic process;0.0174386049300481!GO:0030984;kininogen binding;0.0175374250004983!GO:0004213;cathepsin B activity;0.0175374250004983!GO:0006607;NLS-bearing substrate import into nucleus;0.0176918851810877!GO:0043281;regulation of caspase activity;0.0178797044272171!GO:0032940;secretion by cell;0.0179702092399934!GO:0051338;regulation of transferase activity;0.0179702092399934!GO:0005684;U2-dependent spliceosome;0.0183282348419318!GO:0031529;ruffle organization and biogenesis;0.0185046689709876!GO:0051272;positive regulation of cell motility;0.01913009124847!GO:0040017;positive regulation of locomotion;0.01913009124847!GO:0000209;protein polyubiquitination;0.0198213822264153!GO:0030833;regulation of actin filament polymerization;0.0199393032776914!GO:0001666;response to hypoxia;0.0200254283102898!GO:0048146;positive regulation of fibroblast proliferation;0.0206021265556144!GO:0048144;fibroblast proliferation;0.0210768192162658!GO:0048145;regulation of fibroblast proliferation;0.0210768192162658!GO:0003678;DNA helicase activity;0.0215228032647383!GO:0030433;ER-associated protein catabolic process;0.0217477522554451!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0217477522554451!GO:0022890;inorganic cation transmembrane transporter activity;0.0222777824274737!GO:0008180;signalosome;0.0222829752241333!GO:0035035;histone acetyltransferase binding;0.0225830403625458!GO:0012506;vesicle membrane;0.0227643871768072!GO:0006643;membrane lipid metabolic process;0.0232236819607239!GO:0009116;nucleoside metabolic process;0.0232236819607239!GO:0008538;proteasome activator activity;0.0232435476674514!GO:0003756;protein disulfide isomerase activity;0.0233169476607241!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0233169476607241!GO:0030100;regulation of endocytosis;0.0236513421592582!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0243510204417774!GO:0015002;heme-copper terminal oxidase activity;0.0243510204417774!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0243510204417774!GO:0004129;cytochrome-c oxidase activity;0.0243510204417774!GO:0006749;glutathione metabolic process;0.0244786384991692!GO:0008022;protein C-terminus binding;0.0247767828830663!GO:0016584;nucleosome positioning;0.0247957363627039!GO:0008283;cell proliferation;0.025654282194868!GO:0016272;prefoldin complex;0.0261989008822141!GO:0007041;lysosomal transport;0.026282986792915!GO:0006376;mRNA splice site selection;0.0263406124049126!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0263406124049126!GO:0051540;metal cluster binding;0.0264581853312057!GO:0051536;iron-sulfur cluster binding;0.0264581853312057!GO:0006082;organic acid metabolic process;0.0265366072449328!GO:0004197;cysteine-type endopeptidase activity;0.0265447912379915!GO:0019752;carboxylic acid metabolic process;0.0265708733321012!GO:0000339;RNA cap binding;0.0266908369865222!GO:0044255;cellular lipid metabolic process;0.0266908369865222!GO:0007050;cell cycle arrest;0.0269100403462774!GO:0031124;mRNA 3'-end processing;0.02815135699188!GO:0033673;negative regulation of kinase activity;0.02815135699188!GO:0006469;negative regulation of protein kinase activity;0.02815135699188!GO:0016408;C-acyltransferase activity;0.0281764018776981!GO:0000776;kinetochore;0.0282706922264472!GO:0032507;maintenance of cellular protein localization;0.028836704496968!GO:0006672;ceramide metabolic process;0.0289200786931356!GO:0009166;nucleotide catabolic process;0.0303206292008808!GO:0050681;androgen receptor binding;0.0310231834355653!GO:0008426;protein kinase C inhibitor activity;0.0312006323286669!GO:0051270;regulation of cell motility;0.0314931075426914!GO:0006354;RNA elongation;0.0315004741682861!GO:0001952;regulation of cell-matrix adhesion;0.0325401272334919!GO:0006984;ER-nuclear signaling pathway;0.0326943003446669!GO:0051287;NAD binding;0.0326943003446669!GO:0046426;negative regulation of JAK-STAT cascade;0.0331033694571963!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0340516829127165!GO:0043284;biopolymer biosynthetic process;0.0340977383010606!GO:0016791;phosphoric monoester hydrolase activity;0.0341425990295025!GO:0005938;cell cortex;0.0342327152495978!GO:0033559;unsaturated fatty acid metabolic process;0.034325917548838!GO:0006636;unsaturated fatty acid biosynthetic process;0.034325917548838!GO:0043549;regulation of kinase activity;0.0343868715844453!GO:0006497;protein amino acid lipidation;0.0343868715844453!GO:0007040;lysosome organization and biogenesis;0.0350998970213078!GO:0006405;RNA export from nucleus;0.0351324361854842!GO:0044437;vacuolar part;0.035137715443665!GO:0051348;negative regulation of transferase activity;0.035450297711067!GO:0042770;DNA damage response, signal transduction;0.0364235027519131!GO:0005200;structural constituent of cytoskeleton;0.0367585113077776!GO:0007093;mitotic cell cycle checkpoint;0.0368828001414661!GO:0006778;porphyrin metabolic process;0.0369664755500302!GO:0033013;tetrapyrrole metabolic process;0.0369664755500302!GO:0006118;electron transport;0.0370399769085303!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0371191286823001!GO:0033043;regulation of organelle organization and biogenesis;0.0371191286823001!GO:0030128;clathrin coat of endocytic vesicle;0.037433826914214!GO:0030669;clathrin-coated endocytic vesicle membrane;0.037433826914214!GO:0030122;AP-2 adaptor complex;0.037433826914214!GO:0005784;translocon complex;0.0382155393133597!GO:0043154;negative regulation of caspase activity;0.0394059780765413!GO:0008094;DNA-dependent ATPase activity;0.0395374505654747!GO:0030911;TPR domain binding;0.039761513108176!GO:0050839;cell adhesion molecule binding;0.039761513108176!GO:0031371;ubiquitin conjugating enzyme complex;0.0400036355608775!GO:0006144;purine base metabolic process;0.0403335051691361!GO:0022415;viral reproductive process;0.0407949750106296!GO:0007052;mitotic spindle organization and biogenesis;0.0408773199346949!GO:0005765;lysosomal membrane;0.0413485876146844!GO:0019783;small conjugating protein-specific protease activity;0.0414492837396577!GO:0030041;actin filament polymerization;0.0415747087319621!GO:0007266;Rho protein signal transduction;0.0418713117242084!GO:0042158;lipoprotein biosynthetic process;0.0428732037248458!GO:0051716;cellular response to stimulus;0.0434221845870663!GO:0007021;tubulin folding;0.044102736801276!GO:0030140;trans-Golgi network transport vesicle;0.0444168213318734!GO:0032508;DNA duplex unwinding;0.0444168213318734!GO:0032392;DNA geometric change;0.0444168213318734!GO:0007030;Golgi organization and biogenesis;0.0447227111256041!GO:0004843;ubiquitin-specific protease activity;0.0448041970239477!GO:0007017;microtubule-based process;0.045318468411103!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0455076624727895!GO:0012510;trans-Golgi network transport vesicle membrane;0.0455076624727895!GO:0016311;dephosphorylation;0.046379848795274!GO:0006506;GPI anchor biosynthetic process;0.046397984461624!GO:0044262;cellular carbohydrate metabolic process;0.0467286123314963!GO:0042026;protein refolding;0.0467776487033377!GO:0045892;negative regulation of transcription, DNA-dependent;0.0467914111393846!GO:0005637;nuclear inner membrane;0.0467914111393846!GO:0043130;ubiquitin binding;0.0467914111393846!GO:0032182;small conjugating protein binding;0.0467914111393846!GO:0032594;protein transport within lipid bilayer;0.0471535906601998!GO:0032907;transforming growth factor-beta3 production;0.0471535906601998!GO:0032596;protein transport into lipid raft;0.0471535906601998!GO:0032910;regulation of transforming growth factor-beta3 production;0.0471535906601998!GO:0032595;B cell receptor transport within lipid bilayer;0.0471535906601998!GO:0033606;chemokine receptor transport within lipid bilayer;0.0471535906601998!GO:0032600;chemokine receptor transport out of lipid raft;0.0471535906601998!GO:0032599;protein transport out of lipid raft;0.0471535906601998!GO:0032597;B cell receptor transport into lipid raft;0.0471535906601998!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0471535906601998!GO:0000159;protein phosphatase type 2A complex;0.0473316689874443!GO:0030145;manganese ion binding;0.0473316689874443!GO:0040011;locomotion;0.0475045078254718!GO:0005669;transcription factor TFIID complex;0.0475472304728705!GO:0055092;sterol homeostasis;0.0476555490865139!GO:0042632;cholesterol homeostasis;0.0476555490865139!GO:0055088;lipid homeostasis;0.0477536252190781!GO:0004680;casein kinase activity;0.0482833257875309!GO:0030508;thiol-disulfide exchange intermediate activity;0.0484267460854005!GO:0008601;protein phosphatase type 2A regulator activity;0.0489888129076362!GO:0045936;negative regulation of phosphate metabolic process;0.049268388097049!GO:0033130;acetylcholine receptor binding;0.0493327499387823!GO:0031901;early endosome membrane;0.0495194097092611 | |||
|sample_id=11379 | |sample_id=11379 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=TP53:2.36231557467;TBX4,5:2.31761016621;ADNP_IRX_SIX_ZHX:1.92870882693;ZEB1:1.70292860766;TEF:1.58692872646;VSX1,2:1.50443760707;SNAI1..3:1.48672350059;PDX1:1.33069192057;TEAD1:1.23939849935;NKX2-3_NKX2-5:1.23495595588;PPARG:1.17848443982;NKX2-2,8:1.07547048985;HAND1,2:1.0360772352;NFIX:0.930589636664;ONECUT1,2:0.923687077184;TFCP2:0.896777001203;ZNF148:0.882268559616;XCPE1{core}:0.878039419959;SP1:0.831727184804;bHLH_family:0.806016212689;NANOG:0.792658523468;MYOD1:0.785523416053;STAT5{A,B}:0.779767403217;FOXQ1:0.746286937568;FOS_FOS{B,L1}_JUN{B,D}:0.720651051799;TFAP2{A,C}:0.684507483402;BACH2:0.66505981691;POU1F1:0.651235914125;SPZ1:0.631766112273;NFIL3:0.583709780652;MAZ:0.575777192052;HSF1,2:0.567798827638;ELK1,4_GABP{A,B1}:0.531270800913;FOXM1:0.510225215071;GFI1B:0.499828447713;ZNF238:0.490174885142;NKX2-1,4:0.46386858856;FOSL2:0.461097114199;IKZF1:0.44625908323;PAX1,9:0.441232157673;MTF1:0.428754628017;FOXL1:0.422891732474;SMAD1..7,9:0.383139769289;HIF1A:0.375371657432;POU3F1..4:0.342753839749;SOX2:0.336705770185;HOXA9_MEIS1:0.335043502481;NKX3-2:0.305245353235;TBP:0.299599832786;ZNF143:0.291380544591;LEF1_TCF7_TCF7L1,2:0.289466752842;HLF:0.275966455932;ARID5B:0.260393390229;GZF1:0.235564921188;PAX2:0.213928652657;IRF7:0.21207540157;CEBPA,B_DDIT3:0.194978896343;FOXN1:0.184309419514;EN1,2:0.1482694687;LMO2:0.118673952583;SOX17:0.117830644852;NFE2:0.115842982944;FOXO1,3,4:0.115143280652;NRF1:0.110051831512;CDC5L:0.108697211074;NR5A1,2:0.089443214903;RBPJ:0.0857019863229;NHLH1,2:0.0831190852914;ZIC1..3:0.0790219062573;HOX{A5,B5}:0.0738910286273;ELF1,2,4:0.0664302048982;HMGA1,2:0.0431968222505;TFDP1:0.0420187275753;FOXA2:0.0242108185021;LHX3,4:0.0215881406526;GTF2I:0.00428884419192;ZBTB6:0.00329959347052;NFKB1_REL_RELA:-0.000178978792395;FOX{F1,F2,J1}:-0.00303785170432;EP300:-0.00488120276695;POU6F1:-0.0185143230385;TLX1..3_NFIC{dimer}:-0.0275160260092;FOX{I1,J2}:-0.0657055963721;EBF1:-0.065880293151;SOX{8,9,10}:-0.0669293180659;GCM1,2:-0.0761348428997;HNF1A:-0.0781630363823;TFAP2B:-0.0781958243568;REST:-0.0832791054502;GLI1..3:-0.100285472935;ESR1:-0.10842999006;T:-0.114839273375;NKX6-1,2:-0.127813072439;NFATC1..3:-0.136584066337;MTE{core}:-0.140294289896;OCT4_SOX2{dimer}:-0.145619125609;AR:-0.157153106239;MED-1{core}:-0.170384758401;GTF2A1,2:-0.172767134106;GFI1:-0.183176055732;E2F1..5:-0.185688342412;MYBL2:-0.194276344749;KLF4:-0.196140245865;ETS1,2:-0.205397313478;ZFP161:-0.222313959967;HIC1:-0.237469326234;CRX:-0.240012191877;PITX1..3:-0.250318434558;TLX2:-0.253314287343;JUN:-0.272571130257;NFE2L2:-0.292540290065;PAX5:-0.304959419677;YY1:-0.311616335942;ZNF423:-0.327824692611;EVI1:-0.330411245353;NFY{A,B,C}:-0.332817810963;HES1:-0.347129849953;HNF4A_NR2F1,2:-0.348699090765;SPIB:-0.348827460409;TFAP4:-0.353920877018;SPI1:-0.359783966075;NR1H4:-0.367879071393;PRRX1,2:-0.375188385937;MYB:-0.386053951222;RFX2..5_RFXANK_RFXAP:-0.389828465803;GATA6:-0.391391418557;POU2F1..3:-0.397706578822;HOX{A4,D4}:-0.411559356236;STAT2,4,6:-0.426036388644;HOX{A6,A7,B6,B7}:-0.4365004451;ZBTB16:-0.437357561783;UFEwm:-0.440422415172;MYFfamily:-0.453216219147;IRF1,2:-0.465168142975;PAX8:-0.46806574372;MAFB:-0.479224802076;ATF5_CREB3:-0.503791659969;RXR{A,B,G}:-0.51894625872;EGR1..3:-0.519431922831;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.521049158967;NKX3-1:-0.521611995159;PAX4:-0.522695322931;SRF:-0.528290938237;NR3C1:-0.532681363046;RUNX1..3:-0.544149627483;ATF2:-0.552556132969;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.57314438915;AHR_ARNT_ARNT2:-0.58732484746;SREBF1,2:-0.591748100771;CUX2:-0.614374876279;DMAP1_NCOR{1,2}_SMARC:-0.618588066844;POU5F1:-0.640777781173;HMX1:-0.658079108021;PAX6:-0.659410171732;DBP:-0.675656768663;ATF4:-0.690001311394;STAT1,3:-0.697483582724;RFX1:-0.698137722893;MEF2{A,B,C,D}:-0.70032247383;FOXP1:-0.701606653767;BPTF:-0.714272546214;FOX{D1,D2}:-0.716382999661;CREB1:-0.74673756201;FOXP3:-0.76722309115;RREB1:-0.788053870225;FOXD3:-0.79306036088;TGIF1:-0.79614580494;AIRE:-0.803626441754;PATZ1:-0.818219795714;HBP1_HMGB_SSRP1_UBTF:-0.836809564797;ALX4:-0.850629233185;RORA:-0.853077616774;PAX3,7:-0.863044273542;NFE2L1:-0.885532923884;NR6A1:-0.889162658804;BREu{core}:-0.932623005389;MZF1:-0.941640227541;PRDM1:-0.946722624512;ZNF384:-0.963430414474;PBX1:-0.978280039667;TOPORS:-1.00490080018;SOX5:-1.05293158488;NANOG{mouse}:-1.11519888601;CDX1,2,4:-1.14170825997;ATF6:-1.18299517492;TAL1_TCF{3,4,12}:-1.21892355758;ESRRA:-1.23543780288;GATA4:-1.24354823818;ALX1:-1.3073439238;IKZF2:-1.44914981213;RXRA_VDR{dimer}:-1.6024756742;XBP1:-1.67845095269 | |top_motifs=TP53:2.36231557467;TBX4,5:2.31761016621;ADNP_IRX_SIX_ZHX:1.92870882693;ZEB1:1.70292860766;TEF:1.58692872646;VSX1,2:1.50443760707;SNAI1..3:1.48672350059;PDX1:1.33069192057;TEAD1:1.23939849935;NKX2-3_NKX2-5:1.23495595588;PPARG:1.17848443982;NKX2-2,8:1.07547048985;HAND1,2:1.0360772352;NFIX:0.930589636664;ONECUT1,2:0.923687077184;TFCP2:0.896777001203;ZNF148:0.882268559616;XCPE1{core}:0.878039419959;SP1:0.831727184804;bHLH_family:0.806016212689;NANOG:0.792658523468;MYOD1:0.785523416053;STAT5{A,B}:0.779767403217;FOXQ1:0.746286937568;FOS_FOS{B,L1}_JUN{B,D}:0.720651051799;TFAP2{A,C}:0.684507483402;BACH2:0.66505981691;POU1F1:0.651235914125;SPZ1:0.631766112273;NFIL3:0.583709780652;MAZ:0.575777192052;HSF1,2:0.567798827638;ELK1,4_GABP{A,B1}:0.531270800913;FOXM1:0.510225215071;GFI1B:0.499828447713;ZNF238:0.490174885142;NKX2-1,4:0.46386858856;FOSL2:0.461097114199;IKZF1:0.44625908323;PAX1,9:0.441232157673;MTF1:0.428754628017;FOXL1:0.422891732474;SMAD1..7,9:0.383139769289;HIF1A:0.375371657432;POU3F1..4:0.342753839749;SOX2:0.336705770185;HOXA9_MEIS1:0.335043502481;NKX3-2:0.305245353235;TBP:0.299599832786;ZNF143:0.291380544591;LEF1_TCF7_TCF7L1,2:0.289466752842;HLF:0.275966455932;ARID5B:0.260393390229;GZF1:0.235564921188;PAX2:0.213928652657;IRF7:0.21207540157;CEBPA,B_DDIT3:0.194978896343;FOXN1:0.184309419514;EN1,2:0.1482694687;LMO2:0.118673952583;SOX17:0.117830644852;NFE2:0.115842982944;FOXO1,3,4:0.115143280652;NRF1:0.110051831512;CDC5L:0.108697211074;NR5A1,2:0.089443214903;RBPJ:0.0857019863229;NHLH1,2:0.0831190852914;ZIC1..3:0.0790219062573;HOX{A5,B5}:0.0738910286273;ELF1,2,4:0.0664302048982;HMGA1,2:0.0431968222505;TFDP1:0.0420187275753;FOXA2:0.0242108185021;LHX3,4:0.0215881406526;GTF2I:0.00428884419192;ZBTB6:0.00329959347052;NFKB1_REL_RELA:-0.000178978792395;FOX{F1,F2,J1}:-0.00303785170432;EP300:-0.00488120276695;POU6F1:-0.0185143230385;TLX1..3_NFIC{dimer}:-0.0275160260092;FOX{I1,J2}:-0.0657055963721;EBF1:-0.065880293151;SOX{8,9,10}:-0.0669293180659;GCM1,2:-0.0761348428997;HNF1A:-0.0781630363823;TFAP2B:-0.0781958243568;REST:-0.0832791054502;GLI1..3:-0.100285472935;ESR1:-0.10842999006;T:-0.114839273375;NKX6-1,2:-0.127813072439;NFATC1..3:-0.136584066337;MTE{core}:-0.140294289896;OCT4_SOX2{dimer}:-0.145619125609;AR:-0.157153106239;MED-1{core}:-0.170384758401;GTF2A1,2:-0.172767134106;GFI1:-0.183176055732;E2F1..5:-0.185688342412;MYBL2:-0.194276344749;KLF4:-0.196140245865;ETS1,2:-0.205397313478;ZFP161:-0.222313959967;HIC1:-0.237469326234;CRX:-0.240012191877;PITX1..3:-0.250318434558;TLX2:-0.253314287343;JUN:-0.272571130257;NFE2L2:-0.292540290065;PAX5:-0.304959419677;YY1:-0.311616335942;ZNF423:-0.327824692611;EVI1:-0.330411245353;NFY{A,B,C}:-0.332817810963;HES1:-0.347129849953;HNF4A_NR2F1,2:-0.348699090765;SPIB:-0.348827460409;TFAP4:-0.353920877018;SPI1:-0.359783966075;NR1H4:-0.367879071393;PRRX1,2:-0.375188385937;MYB:-0.386053951222;RFX2..5_RFXANK_RFXAP:-0.389828465803;GATA6:-0.391391418557;POU2F1..3:-0.397706578822;HOX{A4,D4}:-0.411559356236;STAT2,4,6:-0.426036388644;HOX{A6,A7,B6,B7}:-0.4365004451;ZBTB16:-0.437357561783;UFEwm:-0.440422415172;MYFfamily:-0.453216219147;IRF1,2:-0.465168142975;PAX8:-0.46806574372;MAFB:-0.479224802076;ATF5_CREB3:-0.503791659969;RXR{A,B,G}:-0.51894625872;EGR1..3:-0.519431922831;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.521049158967;NKX3-1:-0.521611995159;PAX4:-0.522695322931;SRF:-0.528290938237;NR3C1:-0.532681363046;RUNX1..3:-0.544149627483;ATF2:-0.552556132969;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.57314438915;AHR_ARNT_ARNT2:-0.58732484746;SREBF1,2:-0.591748100771;CUX2:-0.614374876279;DMAP1_NCOR{1,2}_SMARC:-0.618588066844;POU5F1:-0.640777781173;HMX1:-0.658079108021;PAX6:-0.659410171732;DBP:-0.675656768663;ATF4:-0.690001311394;STAT1,3:-0.697483582724;RFX1:-0.698137722893;MEF2{A,B,C,D}:-0.70032247383;FOXP1:-0.701606653767;BPTF:-0.714272546214;FOX{D1,D2}:-0.716382999661;CREB1:-0.74673756201;FOXP3:-0.76722309115;RREB1:-0.788053870225;FOXD3:-0.79306036088;TGIF1:-0.79614580494;AIRE:-0.803626441754;PATZ1:-0.818219795714;HBP1_HMGB_SSRP1_UBTF:-0.836809564797;ALX4:-0.850629233185;RORA:-0.853077616774;PAX3,7:-0.863044273542;NFE2L1:-0.885532923884;NR6A1:-0.889162658804;BREu{core}:-0.932623005389;MZF1:-0.941640227541;PRDM1:-0.946722624512;ZNF384:-0.963430414474;PBX1:-0.978280039667;TOPORS:-1.00490080018;SOX5:-1.05293158488;NANOG{mouse}:-1.11519888601;CDX1,2,4:-1.14170825997;ATF6:-1.18299517492;TAL1_TCF{3,4,12}:-1.21892355758;ESRRA:-1.23543780288;GATA4:-1.24354823818;ALX1:-1.3073439238;IKZF2:-1.44914981213;RXRA_VDR{dimer}:-1.6024756742;XBP1:-1.67845095269 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11379-118B2;search_select_hide=table117:FF:11379-118B2 | |||
}} | }} | ||
Latest revision as of 17:56, 4 June 2020
| Name: | Gingival epithelial cells, donor3 (GEA15) |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11903 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11903
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11903
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.408 |
| 10 | 10 | 0.162 |
| 100 | 100 | 0.737 |
| 101 | 101 | 0.0322 |
| 102 | 102 | 0.225 |
| 103 | 103 | 0.062 |
| 104 | 104 | 0.82 |
| 105 | 105 | 0.13 |
| 106 | 106 | 0.275 |
| 107 | 107 | 0.12 |
| 108 | 108 | 0.499 |
| 109 | 109 | 0.00947 |
| 11 | 11 | 0.899 |
| 110 | 110 | 0.496 |
| 111 | 111 | 0.715 |
| 112 | 112 | 0.765 |
| 113 | 113 | 0.119 |
| 114 | 114 | 0.892 |
| 115 | 115 | 0.785 |
| 116 | 116 | 0.17 |
| 117 | 117 | 0.333 |
| 118 | 118 | 0.863 |
| 119 | 119 | 0.781 |
| 12 | 12 | 0.957 |
| 120 | 120 | 0.0949 |
| 121 | 121 | 0.362 |
| 122 | 122 | 0.0738 |
| 123 | 123 | 0.24 |
| 124 | 124 | 0.034 |
| 125 | 125 | 0.431 |
| 126 | 126 | 0.29 |
| 127 | 127 | 0.274 |
| 128 | 128 | 0.944 |
| 129 | 129 | 0.0608 |
| 13 | 13 | 0.171 |
| 130 | 130 | 0.572 |
| 131 | 131 | 0.318 |
| 132 | 132 | 0.528 |
| 133 | 133 | 0.0148 |
| 134 | 134 | 0.53 |
| 135 | 135 | 0.697 |
| 136 | 136 | 0.00797 |
| 137 | 137 | 0.152 |
| 138 | 138 | 0.676 |
| 139 | 139 | 0.0587 |
| 14 | 14 | 0.672 |
| 140 | 140 | 0.955 |
| 141 | 141 | 0.592 |
| 142 | 142 | 0.82 |
| 143 | 143 | 0.304 |
| 144 | 144 | 0.0687 |
| 145 | 145 | 0.411 |
| 146 | 146 | 0.00537 |
| 147 | 147 | 0.154 |
| 148 | 148 | 0.611 |
| 149 | 149 | 0.359 |
| 15 | 15 | 0.722 |
| 150 | 150 | 0.159 |
| 151 | 151 | 0.652 |
| 152 | 152 | 0.00369 |
| 153 | 153 | 0.759 |
| 154 | 154 | 0.936 |
| 155 | 155 | 0.598 |
| 156 | 156 | 0.633 |
| 157 | 157 | 0.277 |
| 158 | 158 | 0.0872 |
| 159 | 159 | 0.372 |
| 16 | 16 | 0.129 |
| 160 | 160 | 0.688 |
| 161 | 161 | 0.89 |
| 162 | 162 | 0.851 |
| 163 | 163 | 0.307 |
| 164 | 164 | 0.765 |
| 165 | 165 | 0.375 |
| 166 | 166 | 0.183 |
| 167 | 167 | 0.0527 |
| 168 | 168 | 0.286 |
| 169 | 169 | 0.289 |
| 17 | 17 | 0.662 |
| 18 | 18 | 0.912 |
| 19 | 19 | 0.208 |
| 2 | 2 | 0.28 |
| 20 | 20 | 0.723 |
| 21 | 21 | 0.179 |
| 22 | 22 | 0.607 |
| 23 | 23 | 0.386 |
| 24 | 24 | 0.00702 |
| 25 | 25 | 0.939 |
| 26 | 26 | 0.672 |
| 27 | 27 | 0.766 |
| 28 | 28 | 0.368 |
| 29 | 29 | 0.711 |
| 3 | 3 | 0.935 |
| 30 | 30 | 0.0436 |
| 31 | 31 | 0.847 |
| 32 | 32 | 0.00932 |
| 33 | 33 | 0.162 |
| 34 | 34 | 0.866 |
| 35 | 35 | 0.022 |
| 36 | 36 | 0.516 |
| 37 | 37 | 0.514 |
| 38 | 38 | 0.708 |
| 39 | 39 | 0.194 |
| 4 | 4 | 0.966 |
| 40 | 40 | 0.12 |
| 41 | 41 | 0.538 |
| 42 | 42 | 0.868 |
| 43 | 43 | 0.764 |
| 44 | 44 | 0.539 |
| 45 | 45 | 0.0102 |
| 46 | 46 | 0.469 |
| 47 | 47 | 0.987 |
| 48 | 48 | 0.427 |
| 49 | 49 | 0.174 |
| 5 | 5 | 0.608 |
| 50 | 50 | 0.347 |
| 51 | 51 | 0.928 |
| 52 | 52 | 0.151 |
| 53 | 53 | 0.443 |
| 54 | 54 | 0.886 |
| 55 | 55 | 0.375 |
| 56 | 56 | 0.565 |
| 57 | 57 | 0.645 |
| 58 | 58 | 0.967 |
| 59 | 59 | 0.544 |
| 6 | 6 | 0.111 |
| 60 | 60 | 0.25 |
| 61 | 61 | 0.714 |
| 62 | 62 | 0.312 |
| 63 | 63 | 0.305 |
| 64 | 64 | 0.762 |
| 65 | 65 | 0.729 |
| 66 | 66 | 0.308 |
| 67 | 67 | 0.771 |
| 68 | 68 | 0.0173 |
| 69 | 69 | 0.919 |
| 7 | 7 | 0.486 |
| 70 | 70 | 0.466 |
| 71 | 71 | 0.321 |
| 72 | 72 | 0.952 |
| 73 | 73 | 8.30859e-4 |
| 74 | 74 | 0.0121 |
| 75 | 75 | 0.898 |
| 76 | 76 | 0.986 |
| 77 | 77 | 0.0782 |
| 78 | 78 | 0.0149 |
| 79 | 79 | 0.208 |
| 8 | 8 | 0.638 |
| 80 | 80 | 0.975 |
| 81 | 81 | 0.183 |
| 82 | 82 | 0.224 |
| 83 | 83 | 0.632 |
| 84 | 84 | 0.864 |
| 85 | 85 | 0.967 |
| 86 | 86 | 0.753 |
| 87 | 87 | 0.00133 |
| 88 | 88 | 0.622 |
| 89 | 89 | 0.241 |
| 9 | 9 | 0.856 |
| 90 | 90 | 0.964 |
| 91 | 91 | 0.848 |
| 92 | 92 | 0.629 |
| 93 | 93 | 0.972 |
| 94 | 94 | 0.279 |
| 95 | 95 | 0.208 |
| 96 | 96 | 0.59 |
| 97 | 97 | 0.324 |
| 98 | 98 | 0.713 |
| 99 | 99 | 0.0674 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11903
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
