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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008187
|DRA_sample_Accession=CAGE@SAMD00004702
|accession_numbers=CAGE;DRX008295;DRR009167;DRZ000592;DRZ001977
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004702
|accession_numbers=CAGE;DRX008295;DRR009167;DRZ000592;DRZ001977;DRZ011942;DRZ013327
|accession_numbers_RNASeq=sRNA-Seq;DRX037079;DRR041445;DRZ007087
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.35!224.28!SOX15;;chr11:34642612..34642646,+!p1@EHF!2.24!172.94!EHF;;chr3:189507432..189507459,+!p1@TP63!2.10!124.76!TP63;;chr1:209979467..209979494,-!p1@IRF6!1.99!108.99!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.97!91.49!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.91!80.31!ZBED2;;chr1:6479968..6479986,-!p1@HES2!1.89!76.00!HES2;;chr8:10588010..10588030,-!p1@SOX7!1.74!54.49!SOX7;;chr15:83953397..83953425,-!p1@BNC1!1.68!53.63!BNC1;;chr6:10415276..10415341,-!p2@TFAP2A!1.63!50.76!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.62!45.60!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.50!49.90!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.50!46.18!ZNF385A;;chr5:134369905..134369972,-!p1@PITX1!1.40!36.71!PITX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.40!24.38!TFAP2A;;chr15:101069113..101069169,-!p1@CERS3!1.39!23.80!CERS3;;chr17:7492684..7492778,-!p2@SOX15!1.36!45.32!SOX15;;chr2:122042770..122042785,-!p1@TFCP2L1!1.35!21.51!TFCP2L1;;chr3:111314230..111314241,-!p2@ZBED2!1.32!19.79!ZBED2;;chr11:65686802..65686818,+!p6@DRAP1!1.31!33.56!DRAP1;;chr12:66218836..66218888,+!p1@HMGA2!1.29!168.35!HMGA2;;chr5:134369879..134369898,-!p2@PITX1!1.29!18.64!PITX1;;chr9:100615499..100615519,+!p1@FOXE1!1.29!18.64!FOXE1;;chr11:34642656..34642667,+!p2@EHF!1.22!15.49!EHF;;chr12:66218255..66218304,+!p3@HMGA2!1.17!37.00!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.16!61.09!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.15!82.89!SNAI2;;chr12:27485762..27485776,+!p3@ARNTL2!1.15!34.99!ARNTL2;;chr20:55204351..55204377,+!p1@TFAP2C!1.15!16.92!TFAP2C;;chr2:46524897..46524911,+!p2@EPAS1!1.13!35.28!EPAS1;;chr8:102504651..102504683,+!p1@GRHL2!1.13!12.62!GRHL2;;chr3:141121847..141121868,+!p5@ZBTB38!1.11!18.07!ZBTB38;;chr1:209979375..209979386,-!p4@IRF6!1.10!11.47!IRF6;;chr11:34645791..34645836,+!p3@EHF!1.10!11.47!EHF;;chr11:65686732..65686756,+!p2@DRAP1!1.08!47.32!DRAP1;;chr8:49833978..49833996,-!p1@SNAI2!1.06!216.54!SNAI2;;chr6:28321971..28321995,-!p1@ZNF323!1.04!10.04!ZNF323;;chr19:45908292..45908374,-!p1@PPP1R13L!1.02!85.75!PPP1R13L;;chr6:1312325..1312340,+!p1@FOXQ1!1.02!15.49!FOXQ1;;chr5:2751762..2751784,-!p1@IRX2!1.00!8.89!IRX2;;chr15:83953373..83953386,-!p2@BNC1!1.00!8.89!BNC1;;chr12:48298765..48298783,-!p2@VDR!0.98!18.36!VDR;;chr1:209979449..209979460,-!p3@IRF6!0.98!8.60!IRF6;;chr17:70117153..70117174,+!p1@SOX9!0.93!80.02!SOX9;;chr6:10412576..10412599,-!p5@TFAP2A!0.93!7.46!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!0.93!7.46!TFAP2A;;chr17:41622731..41622764,-!p5@ETV4!0.91!7.17!ETV4;;chr1:158979792..158979814,+!p2@IFI16!0.90!69.12!IFI16;;chr5:72744594..72744609,-!p1@FOXD1!0.90!32.98!FOXD1;;chr13:73633131..73633149,+!p1@KLF5!0.89!75.43!KLF5;;chr12:66218212..66218244,+!p5@HMGA2!0.89!10.04!HMGA2;;chr17:41623259..41623278,-!p7@ETV4!0.88!7.74!ETV4;;chr14:37131058..37131139,+!p1@PAX9!0.85!6.02!PAX9;;chr21:38071430..38071456,+!p1@SIM2!0.85!6.02!SIM2;;chr16:67881588..67881612,-!p2@CENPT!0.83!8.03!CENPT;;chr12:66218904..66218913,+!p11@HMGA2!0.83!5.74!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.74!ZFY;;chr5:3595977..3595999,+!p1@IRX1!0.81!5.45!IRX1;;chr4:111544219..111544240,-!p1@PITX2!0.81!5.45!PITX2;;chr19:42636586..42636607,-!p1@POU2F2!0.80!15.49!POU2F2;;chr17:41622765..41622821,-!p2@ETV4!0.80!8.32!ETV4;;chr15:67418119..67418162,+!p5@SMAD3!0.79!5.74!SMAD3;;chr5:3595934..3595957,+!p2@IRX1!0.79!5.16!IRX1;;chr15:67418047..67418093,+!p4@SMAD3!0.77!6.31!SMAD3;;chr6:29648890..29648944,-!p1@ZFP57!0.77!4.88!ZFP57;;chr20:55205825..55205847,+!p2@TFAP2C!0.77!4.88!TFAP2C;;chr12:66218923..66218934,+!p14@HMGA2!0.77!4.88!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.75!9.46!HMGA2;;chr19:53496768..53496799,-!p1@ZNF702P!0.75!7.46!ZNF702P;;chr1:24646263..24646277,+!p4@GRHL3!0.75!4.59!GRHL3;;chr17:7492979..7492991,-!p5@SOX15!0.75!4.59!SOX15;;chr19:2867325..2867348,+!p1@ZNF556!0.75!4.59!ZNF556;;chr6:10415263..10415274,-!p8@TFAP2A!0.75!4.59!TFAP2A;;chr6:28048343..28048354,+!p1@ZNF165!0.75!4.59!ZNF165;;chr2:208030647..208030689,-!p1@KLF7!0.74!41.59!KLF7;;chr11:65667846..65667868,-!p1@FOSL1!0.73!128.20!FOSL1;;chr12:48298785..48298828,-!p1@VDR!0.73!25.53!VDR;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.63!IFI16;;chr12:66218573..66218596,+!p7@HMGA2!0.72!6.60!HMGA2;;chr3:32023232..32023273,+!p1@ZNF860!0.72!6.31!ZNF860;;chr3:189507460..189507471,+!p3@TP63!0.72!4.30!TP63;;chrY:21906594..21906622,-!p1@KDM5D!0.72!4.30!KDM5D;;chr15:67458861..67458879,+!p17@SMAD3!0.72!4.30!SMAD3;;chr16:67881647..67881663,-!p3@CENPT!0.72!4.30!CENPT;;chr12:27485823..27485868,+!p2@ARNTL2!0.71!18.64!ARNTL2;;chr17:41623667..41623682,-!p8@ETV4!0.70!4.30!ETV4;;chr15:83953474..83953483,-!p3@BNC1!0.70!4.02!BNC1;;chr5:2751785..2751808,-!p2@IRX2!0.70!4.02!IRX2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.68!18.07!LRRFIP2;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.35!FOSL1;;chr20:50721803..50721857,-!p2@ZFP64!0.68!6.31!ZFP64;;chr17:41622925..41622976,-!p3@ETV4!0.68!6.02!ETV4;;chr14:21566731..21566836,-!p1@ZNF219!0.67!45.03!ZNF219;;chr19:57792157..577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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002621;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000223
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor3%2520%2528GEA15%2529.CNhs11903.11379-118B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor3%2520%2528GEA15%2529.CNhs11903.11379-118B2.hg19.ctss.bed.gz
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor3%2520%2528GEA15%2529.CNhs11903.11379-118B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor3%2520%2528GEA15%2529.CNhs11903.11379-118B2.hg38.nobarcode.ctss.bed.gz
|id=FF:11379-118B2
|id=FF:11379-118B2
|is_a=EFO:0002091;;FF:0000254
|is_a=EFO:0002091;;FF:0000254
|is_obsolete=
|is_obsolete=
|library_id=CNhs11903
|library_id=CNhs11903
|library_id_phase_based=2:CNhs11903
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11379
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.AGTTCC.11379
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11379
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.AGTTCC.11379
|name=Gingival epithelial cells, donor3 (GEA15)
|name=Gingival epithelial cells, donor3 (GEA15)
|namespace=
|namespace=
Line 49: Line 65:
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|profile_hcage=CNhs11903,LSID834,release010,COMPLETED
|profile_hcage=CNhs11903,LSID834,release010,COMPLETED
|profile_rnaseq=,,,
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|sample_category=primary cells
Line 88: Line 106:
|top_motifs=TP53:2.36231557467;TBX4,5:2.31761016621;ADNP_IRX_SIX_ZHX:1.92870882693;ZEB1:1.70292860766;TEF:1.58692872646;VSX1,2:1.50443760707;SNAI1..3:1.48672350059;PDX1:1.33069192057;TEAD1:1.23939849935;NKX2-3_NKX2-5:1.23495595588;PPARG:1.17848443982;NKX2-2,8:1.07547048985;HAND1,2:1.0360772352;NFIX:0.930589636664;ONECUT1,2:0.923687077184;TFCP2:0.896777001203;ZNF148:0.882268559616;XCPE1{core}:0.878039419959;SP1:0.831727184804;bHLH_family:0.806016212689;NANOG:0.792658523468;MYOD1:0.785523416053;STAT5{A,B}:0.779767403217;FOXQ1:0.746286937568;FOS_FOS{B,L1}_JUN{B,D}:0.720651051799;TFAP2{A,C}:0.684507483402;BACH2:0.66505981691;POU1F1:0.651235914125;SPZ1:0.631766112273;NFIL3:0.583709780652;MAZ:0.575777192052;HSF1,2:0.567798827638;ELK1,4_GABP{A,B1}:0.531270800913;FOXM1:0.510225215071;GFI1B:0.499828447713;ZNF238:0.490174885142;NKX2-1,4:0.46386858856;FOSL2:0.461097114199;IKZF1:0.44625908323;PAX1,9:0.441232157673;MTF1:0.428754628017;FOXL1:0.422891732474;SMAD1..7,9:0.383139769289;HIF1A:0.375371657432;POU3F1..4:0.342753839749;SOX2:0.336705770185;HOXA9_MEIS1:0.335043502481;NKX3-2:0.305245353235;TBP:0.299599832786;ZNF143:0.291380544591;LEF1_TCF7_TCF7L1,2:0.289466752842;HLF:0.275966455932;ARID5B:0.260393390229;GZF1:0.235564921188;PAX2:0.213928652657;IRF7:0.21207540157;CEBPA,B_DDIT3:0.194978896343;FOXN1:0.184309419514;EN1,2:0.1482694687;LMO2:0.118673952583;SOX17:0.117830644852;NFE2:0.115842982944;FOXO1,3,4:0.115143280652;NRF1:0.110051831512;CDC5L:0.108697211074;NR5A1,2:0.089443214903;RBPJ:0.0857019863229;NHLH1,2:0.0831190852914;ZIC1..3:0.0790219062573;HOX{A5,B5}:0.0738910286273;ELF1,2,4:0.0664302048982;HMGA1,2:0.0431968222505;TFDP1:0.0420187275753;FOXA2:0.0242108185021;LHX3,4:0.0215881406526;GTF2I:0.00428884419192;ZBTB6:0.00329959347052;NFKB1_REL_RELA:-0.000178978792395;FOX{F1,F2,J1}:-0.00303785170432;EP300:-0.00488120276695;POU6F1:-0.0185143230385;TLX1..3_NFIC{dimer}:-0.0275160260092;FOX{I1,J2}:-0.0657055963721;EBF1:-0.065880293151;SOX{8,9,10}:-0.0669293180659;GCM1,2:-0.0761348428997;HNF1A:-0.0781630363823;TFAP2B:-0.0781958243568;REST:-0.0832791054502;GLI1..3:-0.100285472935;ESR1:-0.10842999006;T:-0.114839273375;NKX6-1,2:-0.127813072439;NFATC1..3:-0.136584066337;MTE{core}:-0.140294289896;OCT4_SOX2{dimer}:-0.145619125609;AR:-0.157153106239;MED-1{core}:-0.170384758401;GTF2A1,2:-0.172767134106;GFI1:-0.183176055732;E2F1..5:-0.185688342412;MYBL2:-0.194276344749;KLF4:-0.196140245865;ETS1,2:-0.205397313478;ZFP161:-0.222313959967;HIC1:-0.237469326234;CRX:-0.240012191877;PITX1..3:-0.250318434558;TLX2:-0.253314287343;JUN:-0.272571130257;NFE2L2:-0.292540290065;PAX5:-0.304959419677;YY1:-0.311616335942;ZNF423:-0.327824692611;EVI1:-0.330411245353;NFY{A,B,C}:-0.332817810963;HES1:-0.347129849953;HNF4A_NR2F1,2:-0.348699090765;SPIB:-0.348827460409;TFAP4:-0.353920877018;SPI1:-0.359783966075;NR1H4:-0.367879071393;PRRX1,2:-0.375188385937;MYB:-0.386053951222;RFX2..5_RFXANK_RFXAP:-0.389828465803;GATA6:-0.391391418557;POU2F1..3:-0.397706578822;HOX{A4,D4}:-0.411559356236;STAT2,4,6:-0.426036388644;HOX{A6,A7,B6,B7}:-0.4365004451;ZBTB16:-0.437357561783;UFEwm:-0.440422415172;MYFfamily:-0.453216219147;IRF1,2:-0.465168142975;PAX8:-0.46806574372;MAFB:-0.479224802076;ATF5_CREB3:-0.503791659969;RXR{A,B,G}:-0.51894625872;EGR1..3:-0.519431922831;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.521049158967;NKX3-1:-0.521611995159;PAX4:-0.522695322931;SRF:-0.528290938237;NR3C1:-0.532681363046;RUNX1..3:-0.544149627483;ATF2:-0.552556132969;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.57314438915;AHR_ARNT_ARNT2:-0.58732484746;SREBF1,2:-0.591748100771;CUX2:-0.614374876279;DMAP1_NCOR{1,2}_SMARC:-0.618588066844;POU5F1:-0.640777781173;HMX1:-0.658079108021;PAX6:-0.659410171732;DBP:-0.675656768663;ATF4:-0.690001311394;STAT1,3:-0.697483582724;RFX1:-0.698137722893;MEF2{A,B,C,D}:-0.70032247383;FOXP1:-0.701606653767;BPTF:-0.714272546214;FOX{D1,D2}:-0.716382999661;CREB1:-0.74673756201;FOXP3:-0.76722309115;RREB1:-0.788053870225;FOXD3:-0.79306036088;TGIF1:-0.79614580494;AIRE:-0.803626441754;PATZ1:-0.818219795714;HBP1_HMGB_SSRP1_UBTF:-0.836809564797;ALX4:-0.850629233185;RORA:-0.853077616774;PAX3,7:-0.863044273542;NFE2L1:-0.885532923884;NR6A1:-0.889162658804;BREu{core}:-0.932623005389;MZF1:-0.941640227541;PRDM1:-0.946722624512;ZNF384:-0.963430414474;PBX1:-0.978280039667;TOPORS:-1.00490080018;SOX5:-1.05293158488;NANOG{mouse}:-1.11519888601;CDX1,2,4:-1.14170825997;ATF6:-1.18299517492;TAL1_TCF{3,4,12}:-1.21892355758;ESRRA:-1.23543780288;GATA4:-1.24354823818;ALX1:-1.3073439238;IKZF2:-1.44914981213;RXRA_VDR{dimer}:-1.6024756742;XBP1:-1.67845095269
|top_motifs=TP53:2.36231557467;TBX4,5:2.31761016621;ADNP_IRX_SIX_ZHX:1.92870882693;ZEB1:1.70292860766;TEF:1.58692872646;VSX1,2:1.50443760707;SNAI1..3:1.48672350059;PDX1:1.33069192057;TEAD1:1.23939849935;NKX2-3_NKX2-5:1.23495595588;PPARG:1.17848443982;NKX2-2,8:1.07547048985;HAND1,2:1.0360772352;NFIX:0.930589636664;ONECUT1,2:0.923687077184;TFCP2:0.896777001203;ZNF148:0.882268559616;XCPE1{core}:0.878039419959;SP1:0.831727184804;bHLH_family:0.806016212689;NANOG:0.792658523468;MYOD1:0.785523416053;STAT5{A,B}:0.779767403217;FOXQ1:0.746286937568;FOS_FOS{B,L1}_JUN{B,D}:0.720651051799;TFAP2{A,C}:0.684507483402;BACH2:0.66505981691;POU1F1:0.651235914125;SPZ1:0.631766112273;NFIL3:0.583709780652;MAZ:0.575777192052;HSF1,2:0.567798827638;ELK1,4_GABP{A,B1}:0.531270800913;FOXM1:0.510225215071;GFI1B:0.499828447713;ZNF238:0.490174885142;NKX2-1,4:0.46386858856;FOSL2:0.461097114199;IKZF1:0.44625908323;PAX1,9:0.441232157673;MTF1:0.428754628017;FOXL1:0.422891732474;SMAD1..7,9:0.383139769289;HIF1A:0.375371657432;POU3F1..4:0.342753839749;SOX2:0.336705770185;HOXA9_MEIS1:0.335043502481;NKX3-2:0.305245353235;TBP:0.299599832786;ZNF143:0.291380544591;LEF1_TCF7_TCF7L1,2:0.289466752842;HLF:0.275966455932;ARID5B:0.260393390229;GZF1:0.235564921188;PAX2:0.213928652657;IRF7:0.21207540157;CEBPA,B_DDIT3:0.194978896343;FOXN1:0.184309419514;EN1,2:0.1482694687;LMO2:0.118673952583;SOX17:0.117830644852;NFE2:0.115842982944;FOXO1,3,4:0.115143280652;NRF1:0.110051831512;CDC5L:0.108697211074;NR5A1,2:0.089443214903;RBPJ:0.0857019863229;NHLH1,2:0.0831190852914;ZIC1..3:0.0790219062573;HOX{A5,B5}:0.0738910286273;ELF1,2,4:0.0664302048982;HMGA1,2:0.0431968222505;TFDP1:0.0420187275753;FOXA2:0.0242108185021;LHX3,4:0.0215881406526;GTF2I:0.00428884419192;ZBTB6:0.00329959347052;NFKB1_REL_RELA:-0.000178978792395;FOX{F1,F2,J1}:-0.00303785170432;EP300:-0.00488120276695;POU6F1:-0.0185143230385;TLX1..3_NFIC{dimer}:-0.0275160260092;FOX{I1,J2}:-0.0657055963721;EBF1:-0.065880293151;SOX{8,9,10}:-0.0669293180659;GCM1,2:-0.0761348428997;HNF1A:-0.0781630363823;TFAP2B:-0.0781958243568;REST:-0.0832791054502;GLI1..3:-0.100285472935;ESR1:-0.10842999006;T:-0.114839273375;NKX6-1,2:-0.127813072439;NFATC1..3:-0.136584066337;MTE{core}:-0.140294289896;OCT4_SOX2{dimer}:-0.145619125609;AR:-0.157153106239;MED-1{core}:-0.170384758401;GTF2A1,2:-0.172767134106;GFI1:-0.183176055732;E2F1..5:-0.185688342412;MYBL2:-0.194276344749;KLF4:-0.196140245865;ETS1,2:-0.205397313478;ZFP161:-0.222313959967;HIC1:-0.237469326234;CRX:-0.240012191877;PITX1..3:-0.250318434558;TLX2:-0.253314287343;JUN:-0.272571130257;NFE2L2:-0.292540290065;PAX5:-0.304959419677;YY1:-0.311616335942;ZNF423:-0.327824692611;EVI1:-0.330411245353;NFY{A,B,C}:-0.332817810963;HES1:-0.347129849953;HNF4A_NR2F1,2:-0.348699090765;SPIB:-0.348827460409;TFAP4:-0.353920877018;SPI1:-0.359783966075;NR1H4:-0.367879071393;PRRX1,2:-0.375188385937;MYB:-0.386053951222;RFX2..5_RFXANK_RFXAP:-0.389828465803;GATA6:-0.391391418557;POU2F1..3:-0.397706578822;HOX{A4,D4}:-0.411559356236;STAT2,4,6:-0.426036388644;HOX{A6,A7,B6,B7}:-0.4365004451;ZBTB16:-0.437357561783;UFEwm:-0.440422415172;MYFfamily:-0.453216219147;IRF1,2:-0.465168142975;PAX8:-0.46806574372;MAFB:-0.479224802076;ATF5_CREB3:-0.503791659969;RXR{A,B,G}:-0.51894625872;EGR1..3:-0.519431922831;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.521049158967;NKX3-1:-0.521611995159;PAX4:-0.522695322931;SRF:-0.528290938237;NR3C1:-0.532681363046;RUNX1..3:-0.544149627483;ATF2:-0.552556132969;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.57314438915;AHR_ARNT_ARNT2:-0.58732484746;SREBF1,2:-0.591748100771;CUX2:-0.614374876279;DMAP1_NCOR{1,2}_SMARC:-0.618588066844;POU5F1:-0.640777781173;HMX1:-0.658079108021;PAX6:-0.659410171732;DBP:-0.675656768663;ATF4:-0.690001311394;STAT1,3:-0.697483582724;RFX1:-0.698137722893;MEF2{A,B,C,D}:-0.70032247383;FOXP1:-0.701606653767;BPTF:-0.714272546214;FOX{D1,D2}:-0.716382999661;CREB1:-0.74673756201;FOXP3:-0.76722309115;RREB1:-0.788053870225;FOXD3:-0.79306036088;TGIF1:-0.79614580494;AIRE:-0.803626441754;PATZ1:-0.818219795714;HBP1_HMGB_SSRP1_UBTF:-0.836809564797;ALX4:-0.850629233185;RORA:-0.853077616774;PAX3,7:-0.863044273542;NFE2L1:-0.885532923884;NR6A1:-0.889162658804;BREu{core}:-0.932623005389;MZF1:-0.941640227541;PRDM1:-0.946722624512;ZNF384:-0.963430414474;PBX1:-0.978280039667;TOPORS:-1.00490080018;SOX5:-1.05293158488;NANOG{mouse}:-1.11519888601;CDX1,2,4:-1.14170825997;ATF6:-1.18299517492;TAL1_TCF{3,4,12}:-1.21892355758;ESRRA:-1.23543780288;GATA4:-1.24354823818;ALX1:-1.3073439238;IKZF2:-1.44914981213;RXRA_VDR{dimer}:-1.6024756742;XBP1:-1.67845095269
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11379-118B2;search_select_hide=table117:FF:11379-118B2
}}
}}

Latest revision as of 17:56, 4 June 2020

Name:Gingival epithelial cells, donor3 (GEA15)
Species:Human (Homo sapiens)
Library ID:CNhs11903
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuegum
dev stage47 years old adult
sexmale
age47
cell typeepithelial cell
cell lineNA
companyN/A
collaborationMitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004702
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11903 CAGE DRX008295 DRR009167
Accession ID Hg19

Library idBAMCTSS
CNhs11903 DRZ000592 DRZ001977
Accession ID Hg38

Library idBAMCTSS
CNhs11903 DRZ011942 DRZ013327
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004702
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.AGTTCC sRNA-Seq DRX037079 DRR041445
Accession ID Hg19

Library idBAMCTSS
SRhi10006.AGTTCC DRZ007087


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.133
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.071
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.231
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0396
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.316
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.11
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.156
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.386
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0551
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.065
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.204
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.435
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0703
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0513
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0721
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.11
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11903

Jaspar motifP-value
MA0002.20.982
MA0003.10.672
MA0004.10.357
MA0006.10.0173
MA0007.10.939
MA0009.10.0199
MA0014.10.166
MA0017.10.605
MA0018.20.00131
MA0019.10.496
MA0024.10.0525
MA0025.10.975
MA0027.10.231
MA0028.10.0731
MA0029.10.192
MA0030.10.986
MA0031.10.748
MA0035.20.641
MA0038.10.758
MA0039.20.00233
MA0040.10.485
MA0041.10.262
MA0042.10.931
MA0043.10.289
MA0046.10.309
MA0047.20.417
MA0048.10.539
MA0050.10.137
MA0051.10.948
MA0052.10.0204
MA0055.10.0442
MA0057.10.146
MA0058.10.267
MA0059.10.934
MA0060.10.52
MA0061.10.861
MA0062.20.0685
MA0065.20.872
MA0066.10.496
MA0067.10.0316
MA0068.10.15
MA0069.10.829
MA0070.10.558
MA0071.10.0788
MA0072.10.572
MA0073.10.851
MA0074.10.524
MA0076.10.198
MA0077.10.383
MA0078.10.583
MA0079.20.0509
MA0080.20.0341
MA0081.10.792
MA0083.10.0782
MA0084.10.125
MA0087.10.545
MA0088.10.563
MA0090.14.13806e-6
MA0091.10.0814
MA0092.10.688
MA0093.10.348
MA0099.22.41438e-17
MA0100.10.171
MA0101.10.188
MA0102.20.984
MA0103.14.17327e-7
MA0104.20.286
MA0105.10.307
MA0106.14.10331e-12
MA0107.10.294
MA0108.20.169
MA0111.10.259
MA0112.20.751
MA0113.10.175
MA0114.10.566
MA0115.10.704
MA0116.10.317
MA0117.10.473
MA0119.10.911
MA0122.10.977
MA0124.10.536
MA0125.10.0361
MA0131.10.756
MA0135.10.611
MA0136.10.637
MA0137.20.912
MA0138.20.649
MA0139.10.834
MA0140.10.749
MA0141.10.0706
MA0142.10.334
MA0143.10.47
MA0144.10.33
MA0145.10.0117
MA0146.10.586
MA0147.10.402
MA0148.10.331
MA0149.10.105
MA0150.10.116
MA0152.10.252
MA0153.10.314
MA0154.10.92
MA0155.10.277
MA0156.10.292
MA0157.10.48
MA0159.10.431
MA0160.10.59
MA0162.10.215
MA0163.10.29
MA0164.10.887
MA0258.10.181
MA0259.10.249



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11903

Novel motifP-value
10.408
100.162
1000.737
1010.0322
1020.225
1030.062
1040.82
1050.13
1060.275
1070.12
1080.499
1090.00947
110.899
1100.496
1110.715
1120.765
1130.119
1140.892
1150.785
1160.17
1170.333
1180.863
1190.781
120.957
1200.0949
1210.362
1220.0738
1230.24
1240.034
1250.431
1260.29
1270.274
1280.944
1290.0608
130.171
1300.572
1310.318
1320.528
1330.0148
1340.53
1350.697
1360.00797
1370.152
1380.676
1390.0587
140.672
1400.955
1410.592
1420.82
1430.304
1440.0687
1450.411
1460.00537
1470.154
1480.611
1490.359
150.722
1500.159
1510.652
1520.00369
1530.759
1540.936
1550.598
1560.633
1570.277
1580.0872
1590.372
160.129
1600.688
1610.89
1620.851
1630.307
1640.765
1650.375
1660.183
1670.0527
1680.286
1690.289
170.662
180.912
190.208
20.28
200.723
210.179
220.607
230.386
240.00702
250.939
260.672
270.766
280.368
290.711
30.935
300.0436
310.847
320.00932
330.162
340.866
350.022
360.516
370.514
380.708
390.194
40.966
400.12
410.538
420.868
430.764
440.539
450.0102
460.469
470.987
480.427
490.174
50.608
500.347
510.928
520.151
530.443
540.886
550.375
560.565
570.645
580.967
590.544
60.111
600.25
610.714
620.312
630.305
640.762
650.729
660.308
670.771
680.0173
690.919
70.486
700.466
710.321
720.952
738.30859e-4
740.0121
750.898
760.986
770.0782
780.0149
790.208
80.638
800.975
810.183
820.224
830.632
840.864
850.967
860.753
870.00133
880.622
890.241
90.856
900.964
910.848
920.629
930.972
940.279
950.208
960.59
970.324
980.713
990.0674



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11903


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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