FF:11344-117G3: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (26 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004806 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004806 | ||
|accession_numbers=CAGE;DRX008235;DRR009107;DRZ000532;DRZ001917;DRZ011882;DRZ013267 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037118;DRR041484;DRZ007126 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11344-117G3 | |id=FF:11344-117G3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000052 | ||
|is_obsolete= | |||
|library_id=CNhs11377 | |||
|library_id_phase_based=2:CNhs11377 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11344 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.AGTCAA.11344 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11344 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.AGTCAA.11344 | |||
|name=Endothelial Cells - Vein, donor2 | |name=Endothelial Cells - Vein, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11377,LSID771,release012,COMPLETED | |profile_hcage=CNhs11377,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.0125088996496717,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.489851357330007,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0885134249854752,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225178228324021,0,0,0,0.231424205031361,0.201697151681167,0,0,0,0,0.191835680605479,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0485619219991319,0,0,0,0.25468081244855,0.584431127375197,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.191835680605479,0,0,0,0,0,0,0,0,0,0,0,0.338033274006813,0,0.111125930540369,-0.143515142523472,0,0,-0.0143845325325345,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.0223654053118645,0,0.341298513565998,-0.0827201683234173,0,0.188429965902701,-0.04680465889238,0,0,0,0.221608697861088,0.282332045118411,0,0,-0.121779851751874,-0.036414102639066,0,0,1.53599391761051,0,-0.220396694257833,0.308962019916376,0,-0.203915828455472,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,-0.0304099808375785,0,0,0,-0.468803613196165,0,0,-0.373286155956567,0.211254315647868,0,0.200975415163421,0,0.457000707362282,0.179800567042051,0.269866062077909,-0.0522841999826281,0.142469182472047,-0.189981719549847,0,0.225178228324021,0.147929050989711,0,0.202444084479546,0.0318949135671055,0.591408764727443,-0.0315417462537058,0,0,0,-0.00575335286523393,0,0,-0.0279367171170348,0.139750990308724,-0.00092562629615178,0.0715372050037823,0.0113570805978813,0.304254776776427,-0.0395325284566706,0.127775696395783,-0.00618930303593985,-0.276636808982107,0,0,0,0.0255001892535842,-0.785912107107322,0.065149216181215,0,-0.483977461810981,-0.0683442610773682,0,0.046034772335039,0.0857461203903833,0,0,0.00643491842096544,0,0,0,0,0,0.288557772470598,-0.0773141456704275,-0.232855561555545,0,0.1385535570059,0,0.0432016143273606,0,0.281225922412095,-0.146009897457394,0,-0.0027627727530502,0,0.108781191996421,0.0627285654240821,-0.164990696339003,0.403394303362334,0.231424205031361,-0.268293936415992,-0.0274052623904315,0.284990067035462,-0.326761867430488,0.000682075412201999,-0.0881268324752877,0,-0.124154316146185,-0.217320134261786,0,0.67326447974532,0,-0.12044994327312,0,-0.246238330119977,0,0.513286811656601,0.285355357280832,-0.439289374580686,-0.464946565959655,0,0.36461023945737,0.551992682585147,0,0.0174866586712054,0,0,0.530608306025255,0.0616944678596129,-0.211650427864589,-0.138989456679195,0,-0.109104769029762,0,0,-0.225855678103866,-0.235476037764389,0,0.225841969610932,0.071772475146498,-0.0190038919029172,0.173899958408252,0,0,-0.355829306149539,0,0,0.414957395660234,0,0.6141645546961,0.03654469035643,0,-0.108622809454255,0,0,-0.177527765965176,0,-0.183561170120377,0,0,0.212296700760915,0.345549884369606,0,0,0,0,0,-0.0589565109853561,0,0,0,0,0,-0.84465900412947,-0.0649622983732622,0,0.343318555413338,0,0.289871031843186,0,0.462177997359739,0,0,0,0,-0.16695685415074,0.0269341404689128,0.462194733615957,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.42200386099771,0,0,0,-0.27695440160179,0,0,0,0,-0.190636099825917,0,0,-0.342059141543194,0,0.108550729618227,-0.0815818795468414,0,-0.354065244292426,0.336944672343267,0.115753644020474,0,0,-0.261347131789888,0,0,-0.573766324273509,0.206917656672687,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.28041435356255,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.582058233924461,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,0.0125088996496717,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.442074910455851,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.175986658134209,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0.144935515921593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31961299489339,0,-0.284258065816243,0,0,0,0.147066864553056,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.0920328098005262,0,0,0,0,0,0,0.15370791676605,0.0928041147783149,0.0901040480736013,0,0,0,0.090549943439138,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0.655378245660723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2755465224095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241648956604132,0,0.377801365129712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0362604235546807,0,0,-0.173092962801361,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276420970528102,0.584431127375197,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0621180014612095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.585212149292377,0,0,0,0,0,0.979702714660014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0971238439982638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157236414286507,0,0,0,0,0,0,0,0.339482000362738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0237397835175619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382435998694761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181151016158283,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.343519329935157,0,0,-0.0422874684771159,0,0.24676779419164,0,0,0,0,0,0,-0.0676380582978681,0,0,0,0,0,0,0,0,0,0,-0.0400762477245316,0,0,0.0075970134976985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0097989365202199,0,-0.0151752176546233,0.188137460770363,0,0.9676933074123,-0.0570175162120488,0,0,-0.0477396614475454,0.059411072069264,0,0.114878136752887,0.00971886657647005,0,0,0,0,0,0,0,0,0,0.462177997359739,0,0,0,0,-0.0408295247396738,0,0,0,-0.0568589461625992,-0.269475635594569,0,-0.378836254350424,0,0,-0.385458947434215,0,0,0,-0.0959594073735869 | |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA200-R10n | |rna_catalog_number=CA200-R10n | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117G3 | |rna_tube_id=117G3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.AGTCAA | |||
|sample_age=Neonatal | |sample_age=Neonatal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.10043260295905e-213!GO:0005737;cytoplasm;3.93100017002394e-185!GO:0043226;organelle;2.55973038993333e-168!GO:0043229;intracellular organelle;4.09723017089272e-168!GO:0043231;intracellular membrane-bound organelle;4.12616599918451e-163!GO:0043227;membrane-bound organelle;1.06897841715251e-162!GO:0044422;organelle part;6.91851777506723e-139!GO:0044446;intracellular organelle part;1.30472578821055e-137!GO:0044444;cytoplasmic part;5.53703212642392e-135!GO:0032991;macromolecular complex;1.52941559585558e-92!GO:0044238;primary metabolic process;1.6737449324375e-79!GO:0044237;cellular metabolic process;4.05113188390502e-79!GO:0005515;protein binding;3.51735907218118e-78!GO:0030529;ribonucleoprotein complex;8.8909130815213e-75!GO:0043170;macromolecule metabolic process;5.92270124041589e-70!GO:0005739;mitochondrion;2.21506634588645e-68!GO:0043233;organelle lumen;4.32214091608851e-68!GO:0031974;membrane-enclosed lumen;4.32214091608851e-68!GO:0044428;nuclear part;6.03381215326462e-64!GO:0003723;RNA binding;1.25690303153667e-57!GO:0005634;nucleus;2.07580652745553e-56!GO:0019538;protein metabolic process;1.63665496539496e-54!GO:0031090;organelle membrane;5.06340537489136e-53!GO:0043234;protein complex;8.81048046550495e-49!GO:0044260;cellular macromolecule metabolic process;1.67544676670344e-48!GO:0044267;cellular protein metabolic process;1.81003891763092e-48!GO:0005840;ribosome;3.50091896320451e-48!GO:0006412;translation;1.11326783208585e-46!GO:0044429;mitochondrial part;3.96560305636808e-46!GO:0016043;cellular component organization and biogenesis;3.26846341568292e-44!GO:0031967;organelle envelope;6.9044328977459e-43!GO:0031975;envelope;1.54815709255551e-42!GO:0003735;structural constituent of ribosome;4.67665602759953e-42!GO:0009058;biosynthetic process;5.37367316286783e-42!GO:0005829;cytosol;2.84303557967532e-41!GO:0006396;RNA processing;1.43842026789334e-40!GO:0044249;cellular biosynthetic process;4.75732035862138e-40!GO:0031981;nuclear lumen;1.03207450028258e-39!GO:0009059;macromolecule biosynthetic process;4.51971608260482e-37!GO:0033036;macromolecule localization;6.17013817772002e-37!GO:0015031;protein transport;6.21740947658305e-37!GO:0033279;ribosomal subunit;2.33422721044894e-36!GO:0043283;biopolymer metabolic process;8.32587494057649e-36!GO:0008104;protein localization;3.25500597087885e-34!GO:0043228;non-membrane-bound organelle;3.5180321461449e-34!GO:0043232;intracellular non-membrane-bound organelle;3.5180321461449e-34!GO:0045184;establishment of protein localization;4.62668982325591e-34!GO:0006996;organelle organization and biogenesis;8.45270353194212e-33!GO:0046907;intracellular transport;2.85755797901606e-32!GO:0005740;mitochondrial envelope;7.33743172899331e-31!GO:0065003;macromolecular complex assembly;1.80415604212418e-29!GO:0016071;mRNA metabolic process;2.31079377978388e-29!GO:0031966;mitochondrial membrane;5.20512259122578e-29!GO:0006886;intracellular protein transport;1.37965855150857e-27!GO:0019866;organelle inner membrane;3.05132278541722e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.27390819146367e-27!GO:0000166;nucleotide binding;1.73662181986399e-26!GO:0022607;cellular component assembly;2.11593326669837e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.43513783435521e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.71013296616434e-26!GO:0008380;RNA splicing;3.52696443752219e-26!GO:0010467;gene expression;8.08508550289239e-26!GO:0006259;DNA metabolic process;1.6295148460879e-25!GO:0006397;mRNA processing;1.72815809116016e-25!GO:0005743;mitochondrial inner membrane;5.50520300728198e-25!GO:0005654;nucleoplasm;6.20395702570499e-24!GO:0044445;cytosolic part;2.74675113548576e-22!GO:0012505;endomembrane system;8.94407117417244e-22!GO:0051641;cellular localization;9.35187134840822e-22!GO:0051649;establishment of cellular localization;9.61468388602091e-22!GO:0007049;cell cycle;3.69346307565724e-21!GO:0017076;purine nucleotide binding;2.70859926515193e-20!GO:0032553;ribonucleotide binding;3.49815127058376e-20!GO:0032555;purine ribonucleotide binding;3.49815127058376e-20!GO:0016462;pyrophosphatase activity;5.88103828550952e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.4912449665934e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;8.09715628835807e-20!GO:0017111;nucleoside-triphosphatase activity;8.4162391635459e-20!GO:0005681;spliceosome;1.23617944088487e-19!GO:0044451;nucleoplasm part;1.9509372041431e-19!GO:0006119;oxidative phosphorylation;2.31618563902607e-19!GO:0005783;endoplasmic reticulum;4.58643736510287e-19!GO:0031980;mitochondrial lumen;6.1063030342632e-19!GO:0005759;mitochondrial matrix;6.1063030342632e-19!GO:0015935;small ribosomal subunit;9.43449297556237e-19!GO:0016874;ligase activity;1.03103088579838e-18!GO:0015934;large ribosomal subunit;1.34999854898867e-18!GO:0044455;mitochondrial membrane part;4.86792261500079e-18!GO:0043412;biopolymer modification;2.22553784405883e-17!GO:0005730;nucleolus;3.25466186415515e-17!GO:0032559;adenyl ribonucleotide binding;4.44815541301807e-17!GO:0030554;adenyl nucleotide binding;5.19019982779455e-17!GO:0005524;ATP binding;5.27846746918741e-17!GO:0044432;endoplasmic reticulum part;5.27846746918741e-17!GO:0048770;pigment granule;2.23185089676003e-16!GO:0042470;melanosome;2.23185089676003e-16!GO:0044265;cellular macromolecule catabolic process;3.20428015786136e-16!GO:0006457;protein folding;3.46653075984058e-16!GO:0006605;protein targeting;3.67704479804621e-16!GO:0022402;cell cycle process;5.70128534102001e-16!GO:0006464;protein modification process;7.69631684629783e-16!GO:0006512;ubiquitin cycle;8.28092761178554e-16!GO:0005794;Golgi apparatus;1.64756275468062e-15!GO:0008134;transcription factor binding;1.77974845861872e-15!GO:0043285;biopolymer catabolic process;2.26715345160834e-15!GO:0009057;macromolecule catabolic process;3.323825274003e-15!GO:0051186;cofactor metabolic process;3.97077167520866e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.59534006021687e-15!GO:0044248;cellular catabolic process;7.49956726817687e-15!GO:0005746;mitochondrial respiratory chain;8.64882297616856e-15!GO:0000278;mitotic cell cycle;9.37194107296323e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.91349085577118e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;9.558024181018e-14!GO:0022618;protein-RNA complex assembly;1.08556261729515e-13!GO:0043687;post-translational protein modification;1.13467307018402e-13!GO:0019941;modification-dependent protein catabolic process;1.42275098753566e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.42275098753566e-13!GO:0044257;cellular protein catabolic process;1.7913638274942e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.44619482258808e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.86135245408616e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.81032555608248e-13!GO:0005635;nuclear envelope;6.52724577344213e-13!GO:0050136;NADH dehydrogenase (quinone) activity;6.74283322838893e-13!GO:0003954;NADH dehydrogenase activity;6.74283322838893e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.74283322838893e-13!GO:0016192;vesicle-mediated transport;7.17976073456415e-13!GO:0042254;ribosome biogenesis and assembly;7.2766825656332e-13!GO:0008135;translation factor activity, nucleic acid binding;1.45427197222873e-12!GO:0005761;mitochondrial ribosome;1.47478471649806e-12!GO:0000313;organellar ribosome;1.47478471649806e-12!GO:0030163;protein catabolic process;1.65903222188188e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.91487721600551e-12!GO:0042623;ATPase activity, coupled;2.30599501391669e-12!GO:0031965;nuclear membrane;2.66524238914096e-12!GO:0044453;nuclear membrane part;4.0697089887897e-12!GO:0005789;endoplasmic reticulum membrane;5.97312685458339e-12!GO:0016887;ATPase activity;6.54289599909218e-12!GO:0006974;response to DNA damage stimulus;8.50180224181438e-12!GO:0006913;nucleocytoplasmic transport;9.94128124417021e-12!GO:0051082;unfolded protein binding;1.03824898046233e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.11190467560345e-11!GO:0000375;RNA splicing, via transesterification reactions;1.11190467560345e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.11190467560345e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.26303951897847e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.59882741064826e-11!GO:0006732;coenzyme metabolic process;1.86000254156986e-11!GO:0051276;chromosome organization and biogenesis;1.87633378436845e-11!GO:0051169;nuclear transport;2.21722549541859e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.55264474487404e-11!GO:0045271;respiratory chain complex I;2.55264474487404e-11!GO:0005747;mitochondrial respiratory chain complex I;2.55264474487404e-11!GO:0005694;chromosome;3.86659335649107e-11!GO:0042775;organelle ATP synthesis coupled electron transport;3.89911127969544e-11!GO:0042773;ATP synthesis coupled electron transport;3.89911127969544e-11!GO:0003676;nucleic acid binding;4.76917213404967e-11!GO:0048193;Golgi vesicle transport;5.86719651140922e-11!GO:0006323;DNA packaging;6.46941008254062e-11!GO:0009259;ribonucleotide metabolic process;6.67443290054804e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.819849892258e-11!GO:0006260;DNA replication;9.10402314310539e-11!GO:0006163;purine nucleotide metabolic process;1.38691487558424e-10!GO:0044427;chromosomal part;1.48903823929579e-10!GO:0006399;tRNA metabolic process;1.65826603924468e-10!GO:0003712;transcription cofactor activity;2.25159020374138e-10!GO:0000087;M phase of mitotic cell cycle;2.50256122105165e-10!GO:0007067;mitosis;2.76270997675432e-10!GO:0009150;purine ribonucleotide metabolic process;3.66671406646564e-10!GO:0012501;programmed cell death;5.04708652051269e-10!GO:0006915;apoptosis;5.54450496168811e-10!GO:0003743;translation initiation factor activity;6.99206739973296e-10!GO:0022403;cell cycle phase;7.41138639675059e-10!GO:0008639;small protein conjugating enzyme activity;7.41138639675059e-10!GO:0051726;regulation of cell cycle;9.3264450246227e-10!GO:0004842;ubiquitin-protein ligase activity;1.3736654954966e-09!GO:0006164;purine nucleotide biosynthetic process;1.50452270450046e-09!GO:0006333;chromatin assembly or disassembly;1.53665186219122e-09!GO:0009719;response to endogenous stimulus;1.64073730810835e-09!GO:0009055;electron carrier activity;1.9629770790263e-09!GO:0016604;nuclear body;2.01787158920135e-09!GO:0000074;regulation of progression through cell cycle;2.06480591001716e-09!GO:0005643;nuclear pore;2.07648216447367e-09!GO:0009056;catabolic process;2.09966042873222e-09!GO:0005793;ER-Golgi intermediate compartment;2.11602871985009e-09!GO:0009260;ribonucleotide biosynthetic process;2.18935339225724e-09!GO:0016740;transferase activity;3.20925655543405e-09!GO:0019787;small conjugating protein ligase activity;3.61329913705596e-09!GO:0006461;protein complex assembly;3.65114094424286e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.67452274580293e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.79329683234841e-09!GO:0017038;protein import;3.81588935170492e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.11800410639675e-09!GO:0006793;phosphorus metabolic process;4.94635077923602e-09!GO:0006796;phosphate metabolic process;4.94635077923602e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.02245186534316e-09!GO:0006364;rRNA processing;6.20133650999204e-09!GO:0000785;chromatin;6.32053654357357e-09!GO:0051301;cell division;6.81339818510483e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.8873557491239e-09!GO:0004812;aminoacyl-tRNA ligase activity;6.8873557491239e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.8873557491239e-09!GO:0008565;protein transporter activity;7.31186874348766e-09!GO:0006281;DNA repair;7.53364262267629e-09!GO:0009199;ribonucleoside triphosphate metabolic process;8.74531867500008e-09!GO:0008219;cell death;9.11577123482272e-09!GO:0016265;death;9.11577123482272e-09!GO:0065002;intracellular protein transport across a membrane;9.8670754433279e-09!GO:0065004;protein-DNA complex assembly;1.29937776644244e-08!GO:0009141;nucleoside triphosphate metabolic process;1.37631547600725e-08!GO:0016072;rRNA metabolic process;1.50960780422604e-08!GO:0046930;pore complex;1.59498604649879e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.67257158251299e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.67257158251299e-08!GO:0006413;translational initiation;1.72888663478549e-08!GO:0043038;amino acid activation;1.79088941539535e-08!GO:0006418;tRNA aminoacylation for protein translation;1.79088941539535e-08!GO:0043039;tRNA aminoacylation;1.79088941539535e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.37220917681971e-08!GO:0004386;helicase activity;2.60267187234489e-08!GO:0006446;regulation of translational initiation;3.12223901722765e-08!GO:0006334;nucleosome assembly;3.52272401942195e-08!GO:0008026;ATP-dependent helicase activity;3.62028603520006e-08!GO:0016881;acid-amino acid ligase activity;4.54741187338042e-08!GO:0016310;phosphorylation;5.01031420800235e-08!GO:0048523;negative regulation of cellular process;5.9983399698751e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.25204407230581e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.25204407230581e-08!GO:0016070;RNA metabolic process;7.36916449700532e-08!GO:0009117;nucleotide metabolic process;8.33533072342641e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.5089516049547e-08!GO:0006366;transcription from RNA polymerase II promoter;8.54468667156393e-08!GO:0031497;chromatin assembly;8.72057513992404e-08!GO:0009060;aerobic respiration;1.04030619139909e-07!GO:0015986;ATP synthesis coupled proton transport;1.39526942921608e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.39526942921608e-07!GO:0051188;cofactor biosynthetic process;1.39608063958039e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.39923089169245e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.39923089169245e-07!GO:0046034;ATP metabolic process;1.52848594255717e-07!GO:0016787;hydrolase activity;2.13781940197711e-07!GO:0000279;M phase;2.49857722302193e-07!GO:0005788;endoplasmic reticulum lumen;2.67658568861649e-07!GO:0050657;nucleic acid transport;2.9024504513706e-07!GO:0051236;establishment of RNA localization;2.9024504513706e-07!GO:0050658;RNA transport;2.9024504513706e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.90316545564685e-07!GO:0045333;cellular respiration;3.08338998792585e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.48230551445756e-07!GO:0019829;cation-transporting ATPase activity;3.80172148125426e-07!GO:0006403;RNA localization;3.80190705811566e-07!GO:0016607;nuclear speck;3.91672521951554e-07!GO:0016491;oxidoreductase activity;4.10930560786805e-07!GO:0031988;membrane-bound vesicle;6.07697944183542e-07!GO:0015630;microtubule cytoskeleton;9.67546932937919e-07!GO:0042981;regulation of apoptosis;1.07022094655821e-06!GO:0006754;ATP biosynthetic process;1.20153576847221e-06!GO:0006753;nucleoside phosphate metabolic process;1.20153576847221e-06!GO:0032446;protein modification by small protein conjugation;1.22914803627231e-06!GO:0048519;negative regulation of biological process;1.25206547177595e-06!GO:0044431;Golgi apparatus part;1.25940362404326e-06!GO:0016779;nucleotidyltransferase activity;1.25940362404326e-06!GO:0043067;regulation of programmed cell death;1.25940362404326e-06!GO:0031252;leading edge;1.29598978468878e-06!GO:0016567;protein ubiquitination;1.36948422743192e-06!GO:0051246;regulation of protein metabolic process;1.37038944390573e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.85678810939292e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.86078024916888e-06!GO:0051170;nuclear import;1.90038797416593e-06!GO:0007005;mitochondrion organization and biogenesis;2.07290785596785e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.15130591468705e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.16589514993397e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.41677014621343e-06!GO:0048475;coated membrane;2.46616680215998e-06!GO:0030117;membrane coat;2.46616680215998e-06!GO:0006606;protein import into nucleus;2.54190206516365e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.86262992546662e-06!GO:0043069;negative regulation of programmed cell death;2.87294866823214e-06!GO:0006099;tricarboxylic acid cycle;3.09166423780764e-06!GO:0046356;acetyl-CoA catabolic process;3.09166423780764e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.2437681880456e-06!GO:0003697;single-stranded DNA binding;3.92904052852971e-06!GO:0043066;negative regulation of apoptosis;3.9619616314555e-06!GO:0030036;actin cytoskeleton organization and biogenesis;4.31246437667011e-06!GO:0003924;GTPase activity;4.33276545538173e-06!GO:0005768;endosome;4.66869956027838e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.85611457044516e-06!GO:0045786;negative regulation of progression through cell cycle;5.26386338877674e-06!GO:0006916;anti-apoptosis;5.53114137750745e-06!GO:0051187;cofactor catabolic process;6.0507264707914e-06!GO:0045259;proton-transporting ATP synthase complex;6.61752625148046e-06!GO:0030120;vesicle coat;6.7371074779211e-06!GO:0030662;coated vesicle membrane;6.7371074779211e-06!GO:0016568;chromatin modification;6.86413168957493e-06!GO:0019899;enzyme binding;7.16180028068357e-06!GO:0016469;proton-transporting two-sector ATPase complex;7.22743669647673e-06!GO:0006084;acetyl-CoA metabolic process;7.22743669647673e-06!GO:0009108;coenzyme biosynthetic process;7.71714202685881e-06!GO:0000151;ubiquitin ligase complex;7.90961467944427e-06!GO:0005667;transcription factor complex;9.27175367769688e-06!GO:0005813;centrosome;9.42439743791744e-06!GO:0051028;mRNA transport;1.00995754735657e-05!GO:0005525;GTP binding;1.05957857242823e-05!GO:0006752;group transfer coenzyme metabolic process;1.12613191775467e-05!GO:0043566;structure-specific DNA binding;1.27263554168847e-05!GO:0044440;endosomal part;1.27263554168847e-05!GO:0010008;endosome membrane;1.27263554168847e-05!GO:0031410;cytoplasmic vesicle;1.56495510100136e-05!GO:0031982;vesicle;1.80308027828372e-05!GO:0030029;actin filament-based process;1.82317998178441e-05!GO:0016563;transcription activator activity;1.82533483373701e-05!GO:0009109;coenzyme catabolic process;1.90923623762057e-05!GO:0031968;organelle outer membrane;1.95945861587271e-05!GO:0000139;Golgi membrane;2.08147570317927e-05!GO:0065009;regulation of a molecular function;2.1000450048845e-05!GO:0005769;early endosome;2.13742726081292e-05!GO:0004298;threonine endopeptidase activity;2.15456444483442e-05!GO:0005770;late endosome;2.18578662148136e-05!GO:0019867;outer membrane;2.19881159916949e-05!GO:0016853;isomerase activity;2.94030175198176e-05!GO:0005815;microtubule organizing center;3.00282964695678e-05!GO:0003724;RNA helicase activity;3.03481004859984e-05!GO:0000786;nucleosome;3.25474770107848e-05!GO:0003713;transcription coactivator activity;3.36302775999851e-05!GO:0008654;phospholipid biosynthetic process;3.41789422866342e-05!GO:0050794;regulation of cellular process;3.46679982564356e-05!GO:0003899;DNA-directed RNA polymerase activity;3.54767565321574e-05!GO:0005762;mitochondrial large ribosomal subunit;3.92583726624693e-05!GO:0000315;organellar large ribosomal subunit;3.92583726624693e-05!GO:0008047;enzyme activator activity;4.81853815324515e-05!GO:0043623;cellular protein complex assembly;5.41044546204493e-05!GO:0009165;nucleotide biosynthetic process;5.41044546204493e-05!GO:0003714;transcription corepressor activity;5.484793308254e-05!GO:0007010;cytoskeleton organization and biogenesis;5.66389167743023e-05!GO:0045454;cell redox homeostasis;6.07543044867241e-05!GO:0051329;interphase of mitotic cell cycle;6.89678904044712e-05!GO:0005819;spindle;7.09607410193555e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.32815028766452e-05!GO:0015399;primary active transmembrane transporter activity;7.32815028766452e-05!GO:0000245;spliceosome assembly;8.57811697986096e-05!GO:0005741;mitochondrial outer membrane;9.04998678454344e-05!GO:0030867;rough endoplasmic reticulum membrane;9.46219390841548e-05!GO:0007264;small GTPase mediated signal transduction;0.000105944611958088!GO:0051325;interphase;0.000114047363079677!GO:0019843;rRNA binding;0.000119289120009551!GO:0033116;ER-Golgi intermediate compartment membrane;0.000122968937256071!GO:0032561;guanyl ribonucleotide binding;0.000145218593569775!GO:0019001;guanyl nucleotide binding;0.000145218593569775!GO:0051168;nuclear export;0.000163492695137538!GO:0006091;generation of precursor metabolites and energy;0.000165292499210492!GO:0048522;positive regulation of cellular process;0.000184832550886101!GO:0007243;protein kinase cascade;0.000187582907655396!GO:0005096;GTPase activator activity;0.000190249035393438!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000191672545866604!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000203505164371292!GO:0005773;vacuole;0.000212835147681218!GO:0008632;apoptotic program;0.000241760365587024!GO:0008186;RNA-dependent ATPase activity;0.000286086380457594!GO:0006414;translational elongation;0.000290003863631701!GO:0042802;identical protein binding;0.000299488987530074!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000325297001576322!GO:0016044;membrane organization and biogenesis;0.000333592207202491!GO:0005048;signal sequence binding;0.000345462366444211!GO:0008092;cytoskeletal protein binding;0.000347370558733051!GO:0044262;cellular carbohydrate metabolic process;0.000353125399470025!GO:0006613;cotranslational protein targeting to membrane;0.000376725527233871!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000420624729316624!GO:0016564;transcription repressor activity;0.000454863057235249!GO:0005798;Golgi-associated vesicle;0.000486808914073633!GO:0051427;hormone receptor binding;0.000535971315804955!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000538507195629885!GO:0015980;energy derivation by oxidation of organic compounds;0.000538657697246288!GO:0043492;ATPase activity, coupled to movement of substances;0.000559673166423711!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000572417171719647!GO:0005885;Arp2/3 protein complex;0.000582063939586286!GO:0006082;organic acid metabolic process;0.000603084810202422!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00061641596929806!GO:0051087;chaperone binding;0.00062330352059783!GO:0016126;sterol biosynthetic process;0.000682902850042654!GO:0019752;carboxylic acid metabolic process;0.000715011007445606!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000715011007445606!GO:0043021;ribonucleoprotein binding;0.000777285881703691!GO:0007265;Ras protein signal transduction;0.000800341667940034!GO:0004004;ATP-dependent RNA helicase activity;0.000805395581544526!GO:0006261;DNA-dependent DNA replication;0.000870507036152191!GO:0051920;peroxiredoxin activity;0.000881886684177322!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00100061073628189!GO:0005905;coated pit;0.00100975572678391!GO:0035257;nuclear hormone receptor binding;0.00106948940188326!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00111586462022605!GO:0048471;perinuclear region of cytoplasm;0.00111800561762396!GO:0000059;protein import into nucleus, docking;0.00114133735803589!GO:0008250;oligosaccharyl transferase complex;0.00116584125607734!GO:0008033;tRNA processing;0.00118589090266839!GO:0000314;organellar small ribosomal subunit;0.00118589090266839!GO:0005763;mitochondrial small ribosomal subunit;0.00118589090266839!GO:0006695;cholesterol biosynthetic process;0.00121664474479799!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00128621388456555!GO:0000323;lytic vacuole;0.00132240677446078!GO:0005764;lysosome;0.00132240677446078!GO:0050790;regulation of catalytic activity;0.00140330162794415!GO:0043681;protein import into mitochondrion;0.00143112958123423!GO:0016859;cis-trans isomerase activity;0.00144746639816485!GO:0030880;RNA polymerase complex;0.00147142054900828!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00147448060121741!GO:0006612;protein targeting to membrane;0.00150616003991756!GO:0051789;response to protein stimulus;0.00151745185707662!GO:0006986;response to unfolded protein;0.00151745185707662!GO:0016301;kinase activity;0.00160195068046984!GO:0030695;GTPase regulator activity;0.00165037862949297!GO:0015992;proton transport;0.00165709372292118!GO:0006818;hydrogen transport;0.00190242427893086!GO:0044452;nucleolar part;0.00194052557909148!GO:0046474;glycerophospholipid biosynthetic process;0.00197273829203208!GO:0004576;oligosaccharyl transferase activity;0.00211371370826226!GO:0030027;lamellipodium;0.00211371370826226!GO:0007006;mitochondrial membrane organization and biogenesis;0.00211371370826226!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00220775536777259!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00228726789606054!GO:0006626;protein targeting to mitochondrion;0.00235785686642738!GO:0045941;positive regulation of transcription;0.00240615133908456!GO:0006401;RNA catabolic process;0.00244482819539108!GO:0007051;spindle organization and biogenesis;0.00245661793057548!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00246981851580106!GO:0005083;small GTPase regulator activity;0.00250961737585439!GO:0008094;DNA-dependent ATPase activity;0.00262382519439472!GO:0006611;protein export from nucleus;0.0028164032498966!GO:0050789;regulation of biological process;0.00293310557907177!GO:0006950;response to stress;0.00293310557907177!GO:0001558;regulation of cell growth;0.00308766108481574!GO:0007242;intracellular signaling cascade;0.00308766108481574!GO:0000287;magnesium ion binding;0.00315181798209297!GO:0006509;membrane protein ectodomain proteolysis;0.00323483276581158!GO:0033619;membrane protein proteolysis;0.00323483276581158!GO:0050662;coenzyme binding;0.00325155232573885!GO:0003684;damaged DNA binding;0.00327072186261073!GO:0005637;nuclear inner membrane;0.00327072186261073!GO:0048487;beta-tubulin binding;0.00332221839719918!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00332279758679883!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00332279758679883!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00332279758679883!GO:0017166;vinculin binding;0.00333324556703291!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00335914184370732!GO:0018196;peptidyl-asparagine modification;0.00344257495706599!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00344257495706599!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0034446095541863!GO:0000428;DNA-directed RNA polymerase complex;0.0034446095541863!GO:0008361;regulation of cell size;0.00348021074284265!GO:0046483;heterocycle metabolic process;0.00349269396124918!GO:0006839;mitochondrial transport;0.00349269396124918!GO:0006520;amino acid metabolic process;0.00358465598117202!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00370092885313061!GO:0015631;tubulin binding;0.0037105464122883!GO:0005791;rough endoplasmic reticulum;0.00377037288222841!GO:0043284;biopolymer biosynthetic process;0.00391986382833975!GO:0006807;nitrogen compound metabolic process;0.00394272859143999!GO:0031324;negative regulation of cellular metabolic process;0.00440307659976602!GO:0006402;mRNA catabolic process;0.00440830266622065!GO:0031072;heat shock protein binding;0.00440830266622065!GO:0005774;vacuolar membrane;0.00462865578153611!GO:0003678;DNA helicase activity;0.00470059207131692!GO:0016049;cell growth;0.00481578673543475!GO:0051101;regulation of DNA binding;0.00481891551342506!GO:0005684;U2-dependent spliceosome;0.00489782393592847!GO:0007050;cell cycle arrest;0.00496806144967896!GO:0008139;nuclear localization sequence binding;0.00497608244180348!GO:0004674;protein serine/threonine kinase activity;0.00519054265210244!GO:0030659;cytoplasmic vesicle membrane;0.00521649268333344!GO:0003729;mRNA binding;0.0053508206477707!GO:0030133;transport vesicle;0.00540886500483925!GO:0006383;transcription from RNA polymerase III promoter;0.0057280077405726!GO:0032508;DNA duplex unwinding;0.0057997974011213!GO:0032392;DNA geometric change;0.0057997974011213!GO:0030118;clathrin coat;0.00595278247182102!GO:0030132;clathrin coat of coated pit;0.00634190215780927!GO:0046489;phosphoinositide biosynthetic process;0.00655358410497104!GO:0000082;G1/S transition of mitotic cell cycle;0.00675553099757244!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00691108039104409!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00691108039104409!GO:0005874;microtubule;0.00698219303502392!GO:0046467;membrane lipid biosynthetic process;0.00703542481999212!GO:0031902;late endosome membrane;0.00708701971159011!GO:0006289;nucleotide-excision repair;0.00717188666728998!GO:0045893;positive regulation of transcription, DNA-dependent;0.00733042981003108!GO:0005657;replication fork;0.00765193005979662!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00777920389377235!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00777920389377235!GO:0009308;amine metabolic process;0.00808036627408406!GO:0043488;regulation of mRNA stability;0.00811580178699548!GO:0043487;regulation of RNA stability;0.00811580178699548!GO:0007266;Rho protein signal transduction;0.00811580178699548!GO:0051252;regulation of RNA metabolic process;0.00812776058417103!GO:0006595;polyamine metabolic process;0.00818721074441911!GO:0008610;lipid biosynthetic process;0.00824208252857727!GO:0048518;positive regulation of biological process;0.00834877805947665!GO:0030134;ER to Golgi transport vesicle;0.00884455755458618!GO:0006405;RNA export from nucleus;0.00890649554650161!GO:0000096;sulfur amino acid metabolic process;0.00929407959824927!GO:0030658;transport vesicle membrane;0.0092958922212156!GO:0000049;tRNA binding;0.00943144051133499!GO:0051287;NAD binding;0.009445294086872!GO:0035258;steroid hormone receptor binding;0.00950985346988644!GO:0044437;vacuolar part;0.00963551404944637!GO:0000075;cell cycle checkpoint;0.00968722728143512!GO:0046822;regulation of nucleocytoplasmic transport;0.00976591559574487!GO:0030127;COPII vesicle coat;0.00997495441056287!GO:0012507;ER to Golgi transport vesicle membrane;0.00997495441056287!GO:0009892;negative regulation of metabolic process;0.0100773920105215!GO:0006778;porphyrin metabolic process;0.0100929420016001!GO:0033013;tetrapyrrole metabolic process;0.0100929420016001!GO:0051098;regulation of binding;0.0103894177200309!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0104529324249234!GO:0030663;COPI coated vesicle membrane;0.0104631855245971!GO:0030126;COPI vesicle coat;0.0104631855245971!GO:0006740;NADPH regeneration;0.0104757148972432!GO:0006098;pentose-phosphate shunt;0.0104757148972432!GO:0006897;endocytosis;0.0107266767641839!GO:0010324;membrane invagination;0.0107266767641839!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0108421514965692!GO:0048660;regulation of smooth muscle cell proliferation;0.0116664530793695!GO:0003682;chromatin binding;0.0120118572845662!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0124267372563093!GO:0030137;COPI-coated vesicle;0.0124895013693833!GO:0005832;chaperonin-containing T-complex;0.0127648611817171!GO:0006268;DNA unwinding during replication;0.0127963534755054!GO:0003711;transcription elongation regulator activity;0.0130560472869558!GO:0022415;viral reproductive process;0.0135680181896862!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0135680181896862!GO:0007346;regulation of progression through mitotic cell cycle;0.01412255790504!GO:0006497;protein amino acid lipidation;0.0141928543907205!GO:0043189;H4/H2A histone acetyltransferase complex;0.0142375856495764!GO:0005765;lysosomal membrane;0.0142669540321952!GO:0051539;4 iron, 4 sulfur cluster binding;0.014858885107825!GO:0005862;muscle thin filament tropomyosin;0.0157390550704644!GO:0006979;response to oxidative stress;0.0158461809672998!GO:0030119;AP-type membrane coat adaptor complex;0.016788531243518!GO:0044433;cytoplasmic vesicle part;0.0168188019616978!GO:0016584;nucleosome positioning;0.016952283290766!GO:0007040;lysosome organization and biogenesis;0.0172461310197052!GO:0003690;double-stranded DNA binding;0.017699412205529!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0179772193461928!GO:0030176;integral to endoplasmic reticulum membrane;0.0181438382363206!GO:0016408;C-acyltransferase activity;0.0181508037960908!GO:0009967;positive regulation of signal transduction;0.0181540421901752!GO:0007088;regulation of mitosis;0.0183190730122532!GO:0035267;NuA4 histone acetyltransferase complex;0.0183320228719089!GO:0040008;regulation of growth;0.0183394622259639!GO:0015036;disulfide oxidoreductase activity;0.0183394622259639!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0185238976540221!GO:0006650;glycerophospholipid metabolic process;0.0185619254408055!GO:0048037;cofactor binding;0.0186309750545692!GO:0043086;negative regulation of catalytic activity;0.0186623460746733!GO:0016197;endosome transport;0.018803735492703!GO:0031124;mRNA 3'-end processing;0.0189621376280561!GO:0004177;aminopeptidase activity;0.0189648812129977!GO:0043433;negative regulation of transcription factor activity;0.0191689836096743!GO:0035035;histone acetyltransferase binding;0.0192436136599298!GO:0030660;Golgi-associated vesicle membrane;0.0192436136599298!GO:0051540;metal cluster binding;0.0195424923320069!GO:0051536;iron-sulfur cluster binding;0.0195424923320069!GO:0030521;androgen receptor signaling pathway;0.0196025592276574!GO:0016363;nuclear matrix;0.0196223628926156!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0196763050542059!GO:0007162;negative regulation of cell adhesion;0.0197522548117032!GO:0043281;regulation of caspase activity;0.0199606689825524!GO:0003746;translation elongation factor activity;0.0200066204172979!GO:0009112;nucleobase metabolic process;0.0203479067623257!GO:0006519;amino acid and derivative metabolic process;0.0205792862596716!GO:0051270;regulation of cell motility;0.0208649177709318!GO:0006352;transcription initiation;0.0209964122622111!GO:0042168;heme metabolic process;0.0211530695229966!GO:0030041;actin filament polymerization;0.0211530695229966!GO:0030131;clathrin adaptor complex;0.0211530695229966!GO:0045045;secretory pathway;0.0213050534297285!GO:0040011;locomotion;0.0216409124286241!GO:0000775;chromosome, pericentric region;0.0216870797348183!GO:0022890;inorganic cation transmembrane transporter activity;0.0217579906272909!GO:0001726;ruffle;0.0232164865549803!GO:0043022;ribosome binding;0.0232164865549803!GO:0003756;protein disulfide isomerase activity;0.023216820601053!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.023216820601053!GO:0030145;manganese ion binding;0.0237346081453349!GO:0008213;protein amino acid alkylation;0.0237346081453349!GO:0006479;protein amino acid methylation;0.0237346081453349!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0237887145526894!GO:0033673;negative regulation of kinase activity;0.0237887145526894!GO:0006469;negative regulation of protein kinase activity;0.0237887145526894!GO:0000123;histone acetyltransferase complex;0.0239106547678746!GO:0016791;phosphoric monoester hydrolase activity;0.0241197641967757!GO:0006919;caspase activation;0.0242424387101665!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0242531800215777!GO:0051348;negative regulation of transferase activity;0.0242576975044867!GO:0006891;intra-Golgi vesicle-mediated transport;0.0242845574479304!GO:0005092;GDP-dissociation inhibitor activity;0.0243635211750592!GO:0003779;actin binding;0.025364372649207!GO:0006007;glucose catabolic process;0.0262078129904728!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0262078129904728!GO:0005100;Rho GTPase activator activity;0.026461157374237!GO:0047485;protein N-terminus binding;0.026461157374237!GO:0006284;base-excision repair;0.0265351406782255!GO:0048500;signal recognition particle;0.0265401001388258!GO:0016311;dephosphorylation;0.0266448192374956!GO:0009966;regulation of signal transduction;0.0266611526646147!GO:0006118;electron transport;0.0266953352436876!GO:0006220;pyrimidine nucleotide metabolic process;0.0268560794102606!GO:0008629;induction of apoptosis by intracellular signals;0.0274650334395178!GO:0048659;smooth muscle cell proliferation;0.0276109425337938!GO:0045792;negative regulation of cell size;0.0280402211045073!GO:0022406;membrane docking;0.0282958481431039!GO:0048278;vesicle docking;0.0282958481431039!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0284157017938705!GO:0043414;biopolymer methylation;0.0285794600064084!GO:0033559;unsaturated fatty acid metabolic process;0.0293675337259835!GO:0006636;unsaturated fatty acid biosynthetic process;0.0293675337259835!GO:0031418;L-ascorbic acid binding;0.0296263191926974!GO:0022408;negative regulation of cell-cell adhesion;0.0297707219259622!GO:0019206;nucleoside kinase activity;0.0298084759324091!GO:0042393;histone binding;0.0303019618402996!GO:0005869;dynactin complex;0.0303737146846995!GO:0006779;porphyrin biosynthetic process;0.0304024308231159!GO:0033014;tetrapyrrole biosynthetic process;0.0304024308231159!GO:0031272;regulation of pseudopodium formation;0.0305796132767432!GO:0031269;pseudopodium formation;0.0305796132767432!GO:0031344;regulation of cell projection organization and biogenesis;0.0305796132767432!GO:0031268;pseudopodium organization and biogenesis;0.0305796132767432!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0305796132767432!GO:0031274;positive regulation of pseudopodium formation;0.0305796132767432!GO:0008538;proteasome activator activity;0.0307418262072937!GO:0005099;Ras GTPase activator activity;0.0308100443991875!GO:0040012;regulation of locomotion;0.0308389439242811!GO:0006378;mRNA polyadenylation;0.0313576029116201!GO:0016741;transferase activity, transferring one-carbon groups;0.0313948751013974!GO:0032507;maintenance of cellular protein localization;0.0316443895498216!GO:0046426;negative regulation of JAK-STAT cascade;0.0317042965933982!GO:0008154;actin polymerization and/or depolymerization;0.0317201210738928!GO:0000209;protein polyubiquitination;0.0321472673217538!GO:0031901;early endosome membrane;0.0323461745043076!GO:0009124;nucleoside monophosphate biosynthetic process;0.0325429793428681!GO:0009123;nucleoside monophosphate metabolic process;0.0325429793428681!GO:0006417;regulation of translation;0.0328247737415736!GO:0030308;negative regulation of cell growth;0.0328247737415736!GO:0007044;cell-substrate junction assembly;0.0328247737415736!GO:0004518;nuclease activity;0.0329695202083159!GO:0006904;vesicle docking during exocytosis;0.0329695202083159!GO:0006458;'de novo' protein folding;0.0330522440858392!GO:0051084;'de novo' posttranslational protein folding;0.0330522440858392!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0330522440858392!GO:0015002;heme-copper terminal oxidase activity;0.0330522440858392!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0330522440858392!GO:0004129;cytochrome-c oxidase activity;0.0330522440858392!GO:0008022;protein C-terminus binding;0.0336006884840097!GO:0016481;negative regulation of transcription;0.0342130858750888!GO:0042158;lipoprotein biosynthetic process;0.0345065169648825!GO:0030032;lamellipodium biogenesis;0.0347985606912082!GO:0007033;vacuole organization and biogenesis;0.0358980658026909!GO:0006643;membrane lipid metabolic process;0.0359197186768397!GO:0019318;hexose metabolic process;0.0359227048631564!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0366261968135214!GO:0007034;vacuolar transport;0.0368857126878019!GO:0001568;blood vessel development;0.0369278037738957!GO:0006338;chromatin remodeling;0.0370085114714283!GO:0004003;ATP-dependent DNA helicase activity;0.0386425230940166!GO:0006376;mRNA splice site selection;0.0386425230940166!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0386425230940166!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0387580516575704!GO:0008168;methyltransferase activity;0.0390185897900649!GO:0045879;negative regulation of smoothened signaling pathway;0.0393323476722539!GO:0030384;phosphoinositide metabolic process;0.0394199174124005!GO:0051059;NF-kappaB binding;0.0395701824396255!GO:0006739;NADP metabolic process;0.0399696083636799!GO:0006506;GPI anchor biosynthetic process;0.0405380794494113!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0408733119266789!GO:0009116;nucleoside metabolic process;0.0408958126189559!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0408958126189559!GO:0012506;vesicle membrane;0.0413935658062678!GO:0008312;7S RNA binding;0.0414294879118925!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0415348631226534!GO:0031625;ubiquitin protein ligase binding;0.0420587436952239!GO:0051338;regulation of transferase activity;0.0422538983411081!GO:0006144;purine base metabolic process;0.0422538983411081!GO:0045185;maintenance of protein localization;0.0426162803279965!GO:0009303;rRNA transcription;0.0428692113729698!GO:0004448;isocitrate dehydrogenase activity;0.0428692113729698!GO:0031529;ruffle organization and biogenesis;0.0428692113729698!GO:0009893;positive regulation of metabolic process;0.0428953358219207!GO:0065007;biological regulation;0.0430088656139559!GO:0051336;regulation of hydrolase activity;0.0445243505076068!GO:0004680;casein kinase activity;0.0452675513245987!GO:0001953;negative regulation of cell-matrix adhesion;0.0459168591583263!GO:0001944;vasculature development;0.0459468308496727!GO:0018193;peptidyl-amino acid modification;0.045995262101846!GO:0008180;signalosome;0.045995262101846!GO:0007021;tubulin folding;0.0460155620339597!GO:0006505;GPI anchor metabolic process;0.0463208385028887!GO:0005876;spindle microtubule;0.0468637145416265!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0471199448373849!GO:0042987;amyloid precursor protein catabolic process;0.0482714021033679!GO:0000910;cytokinesis;0.0487735391832272!GO:0000339;RNA cap binding;0.0489060211146725!GO:0019904;protein domain specific binding;0.0489060211146725!GO:0008234;cysteine-type peptidase activity;0.0489060211146725 | |||
|sample_id=11344 | |sample_id=11344 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=vein | |sample_tissue=vein | ||
|top_motifs=SOX{8,9,10}:2.54942126259;PAX1,9:1.38573200456;AR:1.29335170818;SPZ1:1.2717178966;PAX8:1.23470499633;GATA6:1.18561123727;TLX1..3_NFIC{dimer}:1.14498135346;HBP1_HMGB_SSRP1_UBTF:1.08474333439;RXR{A,B,G}:1.04931851363;SOX2:1.03950375822;TFAP2{A,C}:1.0192047986;FOX{I1,J2}:1.01780227344;ZNF148:0.929482675712;POU2F1..3:0.922011506509;LEF1_TCF7_TCF7L1,2:0.909874529765;bHLH_family:0.898979959699;GTF2A1,2:0.896389693527;ETS1,2:0.826918360623;MYOD1:0.73535213411;NFATC1..3:0.728037222055;ONECUT1,2:0.710870496797;ZNF423:0.68654080036;TP53:0.673038790506;HOX{A5,B5}:0.666625558766;PBX1:0.666240557953;HES1:0.657076243321;RORA:0.644284090082;SPIB:0.634659779479;NANOG:0.628788320269;HAND1,2:0.624780518084;STAT5{A,B}:0.623103636518;NR3C1:0.619282384393;EN1,2:0.617794430335;NFE2:0.609640949647;CRX:0.585632604197;BACH2:0.571187425159;XCPE1{core}:0.53493748297;GFI1B:0.533725480985;HIC1:0.513085009259;IKZF1:0.502613905224;POU3F1..4:0.492802266949;GZF1:0.47082743927;ELF1,2,4:0.437600496036;NR5A1,2:0.429730115276;FOSL2:0.399142923099;FOS_FOS{B,L1}_JUN{B,D}:0.364104736498;TFDP1:0.36113947523;ZBTB6:0.360583292512;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.329705255425;ZNF238:0.311434033106;TFAP4:0.311315703323;ALX1:0.302450888487;SOX17:0.298186483581;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.289587914365;GFI1:0.279790900324;POU6F1:0.279731778986;REST:0.278180870147;TBP:0.276018246881;ARID5B:0.265643105737;MYB:0.249341635689;TEAD1:0.218601854191;LHX3,4:0.214281548517;PAX2:0.212633343034;SRF:0.197142532611;EBF1:0.176850867299;LMO2:0.162224532427;PAX5:0.15214649918;PAX6:0.147563438688;NFY{A,B,C}:0.133369973458;GLI1..3:0.132987110784;ESRRA:0.126722028266;FOXA2:0.125841045872;ZFP161:0.11674459832;TFAP2B:0.109781943775;NHLH1,2:0.0933630242139;STAT2,4,6:0.0823799634354;SMAD1..7,9:0.0723246155203;HNF4A_NR2F1,2:0.0717044628918;PRRX1,2:0.0474473552429;RBPJ:-0.00221325642478;NKX2-2,8:-0.0185427760105;E2F1..5:-0.0225908721299;T:-0.027200760338;IKZF2:-0.0360115777563;GTF2I:-0.0385568725685;CUX2:-0.0400036423215;FOXL1:-0.0438783922387;MEF2{A,B,C,D}:-0.0785242153458;FOXQ1:-0.0799017069823;NFE2L1:-0.0823801008762;MED-1{core}:-0.0834794002012;NFE2L2:-0.0897479922891;ESR1:-0.0920699693794;HMX1:-0.0952961416147;POU1F1:-0.103044202487;SOX5:-0.106219110473;NR6A1:-0.108018262806;SPI1:-0.109250427167;NKX2-3_NKX2-5:-0.110397806825;SP1:-0.118342861866;ADNP_IRX_SIX_ZHX:-0.126545561544;YY1:-0.135715142207;ZNF143:-0.137582119531;HNF1A:-0.167491905595;ZIC1..3:-0.186914893234;OCT4_SOX2{dimer}:-0.191700853994;EGR1..3:-0.219520604319;HOXA9_MEIS1:-0.225748843164;JUN:-0.247042262407;ATF2:-0.25338180698;NANOG{mouse}:-0.256514927349;GATA4:-0.269196620122;RFX1:-0.272085164572;MAFB:-0.298561583954;MTE{core}:-0.315448831695;MZF1:-0.320598402022;NRF1:-0.324777881309;TFCP2:-0.325659304864;PATZ1:-0.328672924918;VSX1,2:-0.336565909462;PITX1..3:-0.342919502842;TEF:-0.348475605271;RUNX1..3:-0.359095986009;NFKB1_REL_RELA:-0.36369911075;NR1H4:-0.364145065995;HLF:-0.371441955626;RXRA_VDR{dimer}:-0.374245072007;GCM1,2:-0.411200814578;RREB1:-0.422754270506;PRDM1:-0.43175791676;CEBPA,B_DDIT3:-0.435838259079;ALX4:-0.450735482154;SNAI1..3:-0.45715738826;TAL1_TCF{3,4,12}:-0.486269287217;FOX{F1,F2,J1}:-0.490371485621;UFEwm:-0.500987572657;PPARG:-0.517742839225;ZEB1:-0.530872315901;FOXM1:-0.569909676692;HIF1A:-0.571509046636;POU5F1:-0.587892460741;PAX3,7:-0.594433705847;MTF1:-0.613871691851;MAZ:-0.634829193766;STAT1,3:-0.696354258674;ATF6:-0.709843997117;TGIF1:-0.720731365138;BREu{core}:-0.736808581795;KLF4:-0.743735188777;FOX{D1,D2}:-0.744035109098;MYFfamily:-0.760701846475;TBX4,5:-0.76366988729;ELK1,4_GABP{A,B1}:-0.765085029578;SREBF1,2:-0.773361734058;DBP:-0.785939474295;EP300:-0.786499273376;TOPORS:-0.800088372674;FOXN1:-0.800585058836;HMGA1,2:-0.804854070386;ATF5_CREB3:-0.80601011389;RFX2..5_RFXANK_RFXAP:-0.814292091711;PDX1:-0.818609492993;EVI1:-0.83723550881;XBP1:-0.839327452087;IRF7:-0.862269650161;HOX{A6,A7,B6,B7}:-0.862712775509;IRF1,2:-0.872179743487;DMAP1_NCOR{1,2}_SMARC:-0.87590627524;FOXD3:-0.886948585554;NFIL3:-0.907565695318;CDC5L:-0.920954948798;CREB1:-0.92815963285;NFIX:-0.985742422941;BPTF:-0.998268675373;HSF1,2:-1.01664552853;ATF4:-1.03796036432;AHR_ARNT_ARNT2:-1.12707040625;ZNF384:-1.13602255862;MYBL2:-1.1469072761;PAX4:-1.15485130853;FOXO1,3,4:-1.20561189245;TLX2:-1.22995244988;NKX3-2:-1.23920758306;FOXP3:-1.25279585734;AIRE:-1.34568366792;NKX6-1,2:-1.39176649783;HOX{A4,D4}:-1.41438217378;ZBTB16:-1.44106611451;FOXP1:-1.50430241503;NKX2-1,4:-1.60623103101;CDX1,2,4:-1.68737811102;NKX3-1:-2.2095918003 | |top_motifs=SOX{8,9,10}:2.54942126259;PAX1,9:1.38573200456;AR:1.29335170818;SPZ1:1.2717178966;PAX8:1.23470499633;GATA6:1.18561123727;TLX1..3_NFIC{dimer}:1.14498135346;HBP1_HMGB_SSRP1_UBTF:1.08474333439;RXR{A,B,G}:1.04931851363;SOX2:1.03950375822;TFAP2{A,C}:1.0192047986;FOX{I1,J2}:1.01780227344;ZNF148:0.929482675712;POU2F1..3:0.922011506509;LEF1_TCF7_TCF7L1,2:0.909874529765;bHLH_family:0.898979959699;GTF2A1,2:0.896389693527;ETS1,2:0.826918360623;MYOD1:0.73535213411;NFATC1..3:0.728037222055;ONECUT1,2:0.710870496797;ZNF423:0.68654080036;TP53:0.673038790506;HOX{A5,B5}:0.666625558766;PBX1:0.666240557953;HES1:0.657076243321;RORA:0.644284090082;SPIB:0.634659779479;NANOG:0.628788320269;HAND1,2:0.624780518084;STAT5{A,B}:0.623103636518;NR3C1:0.619282384393;EN1,2:0.617794430335;NFE2:0.609640949647;CRX:0.585632604197;BACH2:0.571187425159;XCPE1{core}:0.53493748297;GFI1B:0.533725480985;HIC1:0.513085009259;IKZF1:0.502613905224;POU3F1..4:0.492802266949;GZF1:0.47082743927;ELF1,2,4:0.437600496036;NR5A1,2:0.429730115276;FOSL2:0.399142923099;FOS_FOS{B,L1}_JUN{B,D}:0.364104736498;TFDP1:0.36113947523;ZBTB6:0.360583292512;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.329705255425;ZNF238:0.311434033106;TFAP4:0.311315703323;ALX1:0.302450888487;SOX17:0.298186483581;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.289587914365;GFI1:0.279790900324;POU6F1:0.279731778986;REST:0.278180870147;TBP:0.276018246881;ARID5B:0.265643105737;MYB:0.249341635689;TEAD1:0.218601854191;LHX3,4:0.214281548517;PAX2:0.212633343034;SRF:0.197142532611;EBF1:0.176850867299;LMO2:0.162224532427;PAX5:0.15214649918;PAX6:0.147563438688;NFY{A,B,C}:0.133369973458;GLI1..3:0.132987110784;ESRRA:0.126722028266;FOXA2:0.125841045872;ZFP161:0.11674459832;TFAP2B:0.109781943775;NHLH1,2:0.0933630242139;STAT2,4,6:0.0823799634354;SMAD1..7,9:0.0723246155203;HNF4A_NR2F1,2:0.0717044628918;PRRX1,2:0.0474473552429;RBPJ:-0.00221325642478;NKX2-2,8:-0.0185427760105;E2F1..5:-0.0225908721299;T:-0.027200760338;IKZF2:-0.0360115777563;GTF2I:-0.0385568725685;CUX2:-0.0400036423215;FOXL1:-0.0438783922387;MEF2{A,B,C,D}:-0.0785242153458;FOXQ1:-0.0799017069823;NFE2L1:-0.0823801008762;MED-1{core}:-0.0834794002012;NFE2L2:-0.0897479922891;ESR1:-0.0920699693794;HMX1:-0.0952961416147;POU1F1:-0.103044202487;SOX5:-0.106219110473;NR6A1:-0.108018262806;SPI1:-0.109250427167;NKX2-3_NKX2-5:-0.110397806825;SP1:-0.118342861866;ADNP_IRX_SIX_ZHX:-0.126545561544;YY1:-0.135715142207;ZNF143:-0.137582119531;HNF1A:-0.167491905595;ZIC1..3:-0.186914893234;OCT4_SOX2{dimer}:-0.191700853994;EGR1..3:-0.219520604319;HOXA9_MEIS1:-0.225748843164;JUN:-0.247042262407;ATF2:-0.25338180698;NANOG{mouse}:-0.256514927349;GATA4:-0.269196620122;RFX1:-0.272085164572;MAFB:-0.298561583954;MTE{core}:-0.315448831695;MZF1:-0.320598402022;NRF1:-0.324777881309;TFCP2:-0.325659304864;PATZ1:-0.328672924918;VSX1,2:-0.336565909462;PITX1..3:-0.342919502842;TEF:-0.348475605271;RUNX1..3:-0.359095986009;NFKB1_REL_RELA:-0.36369911075;NR1H4:-0.364145065995;HLF:-0.371441955626;RXRA_VDR{dimer}:-0.374245072007;GCM1,2:-0.411200814578;RREB1:-0.422754270506;PRDM1:-0.43175791676;CEBPA,B_DDIT3:-0.435838259079;ALX4:-0.450735482154;SNAI1..3:-0.45715738826;TAL1_TCF{3,4,12}:-0.486269287217;FOX{F1,F2,J1}:-0.490371485621;UFEwm:-0.500987572657;PPARG:-0.517742839225;ZEB1:-0.530872315901;FOXM1:-0.569909676692;HIF1A:-0.571509046636;POU5F1:-0.587892460741;PAX3,7:-0.594433705847;MTF1:-0.613871691851;MAZ:-0.634829193766;STAT1,3:-0.696354258674;ATF6:-0.709843997117;TGIF1:-0.720731365138;BREu{core}:-0.736808581795;KLF4:-0.743735188777;FOX{D1,D2}:-0.744035109098;MYFfamily:-0.760701846475;TBX4,5:-0.76366988729;ELK1,4_GABP{A,B1}:-0.765085029578;SREBF1,2:-0.773361734058;DBP:-0.785939474295;EP300:-0.786499273376;TOPORS:-0.800088372674;FOXN1:-0.800585058836;HMGA1,2:-0.804854070386;ATF5_CREB3:-0.80601011389;RFX2..5_RFXANK_RFXAP:-0.814292091711;PDX1:-0.818609492993;EVI1:-0.83723550881;XBP1:-0.839327452087;IRF7:-0.862269650161;HOX{A6,A7,B6,B7}:-0.862712775509;IRF1,2:-0.872179743487;DMAP1_NCOR{1,2}_SMARC:-0.87590627524;FOXD3:-0.886948585554;NFIL3:-0.907565695318;CDC5L:-0.920954948798;CREB1:-0.92815963285;NFIX:-0.985742422941;BPTF:-0.998268675373;HSF1,2:-1.01664552853;ATF4:-1.03796036432;AHR_ARNT_ARNT2:-1.12707040625;ZNF384:-1.13602255862;MYBL2:-1.1469072761;PAX4:-1.15485130853;FOXO1,3,4:-1.20561189245;TLX2:-1.22995244988;NKX3-2:-1.23920758306;FOXP3:-1.25279585734;AIRE:-1.34568366792;NKX6-1,2:-1.39176649783;HOX{A4,D4}:-1.41438217378;ZBTB16:-1.44106611451;FOXP1:-1.50430241503;NKX2-1,4:-1.60623103101;CDX1,2,4:-1.68737811102;NKX3-1:-2.2095918003 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11344-117G3;search_select_hide=table117:FF:11344-117G3 | |||
}} | }} | ||
Latest revision as of 17:53, 4 June 2020
| Name: | Endothelial Cells - Vein, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11377 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11377
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11377
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.5 |
| 10 | 10 | 0.265 |
| 100 | 100 | 0.929 |
| 101 | 101 | 0.368 |
| 102 | 102 | 0.728 |
| 103 | 103 | 0.967 |
| 104 | 104 | 0.747 |
| 105 | 105 | 0.465 |
| 106 | 106 | 0.0558 |
| 107 | 107 | 0.0721 |
| 108 | 108 | 0.83 |
| 109 | 109 | 0.171 |
| 11 | 11 | 0.0791 |
| 110 | 110 | 0.0327 |
| 111 | 111 | 0.538 |
| 112 | 112 | 0.913 |
| 113 | 113 | 0.317 |
| 114 | 114 | 0.258 |
| 115 | 115 | 0.613 |
| 116 | 116 | 0.679 |
| 117 | 117 | 0.51 |
| 118 | 118 | 0.721 |
| 119 | 119 | 0.356 |
| 12 | 12 | 0.0653 |
| 120 | 120 | 0.00551 |
| 121 | 121 | 0.641 |
| 122 | 122 | 0.283 |
| 123 | 123 | 0.104 |
| 124 | 124 | 0.915 |
| 125 | 125 | 0.575 |
| 126 | 126 | 0.533 |
| 127 | 127 | 0.484 |
| 128 | 128 | 0.551 |
| 129 | 129 | 0.106 |
| 13 | 13 | 0.305 |
| 130 | 130 | 0.302 |
| 131 | 131 | 0.394 |
| 132 | 132 | 0.822 |
| 133 | 133 | 0.356 |
| 134 | 134 | 0.761 |
| 135 | 135 | 0.0303 |
| 136 | 136 | 0.359 |
| 137 | 137 | 0.232 |
| 138 | 138 | 0.696 |
| 139 | 139 | 0.458 |
| 14 | 14 | 0.884 |
| 140 | 140 | 0.248 |
| 141 | 141 | 0.132 |
| 142 | 142 | 0.659 |
| 143 | 143 | 0.0314 |
| 144 | 144 | 0.41 |
| 145 | 145 | 0.0308 |
| 146 | 146 | 0.0496 |
| 147 | 147 | 0.15 |
| 148 | 148 | 0.246 |
| 149 | 149 | 0.0499 |
| 15 | 15 | 0.253 |
| 150 | 150 | 0.125 |
| 151 | 151 | 0.824 |
| 152 | 152 | 0.0756 |
| 153 | 153 | 0.536 |
| 154 | 154 | 0.418 |
| 155 | 155 | 0.919 |
| 156 | 156 | 0.0505 |
| 157 | 157 | 0.473 |
| 158 | 158 | 0.551 |
| 159 | 159 | 0.698 |
| 16 | 16 | 0.861 |
| 160 | 160 | 0.0297 |
| 161 | 161 | 0.634 |
| 162 | 162 | 0.632 |
| 163 | 163 | 0.571 |
| 164 | 164 | 0.739 |
| 165 | 165 | 0.724 |
| 166 | 166 | 0.144 |
| 167 | 167 | 0.0519 |
| 168 | 168 | 0.996 |
| 169 | 169 | 0.0394 |
| 17 | 17 | 0.144 |
| 18 | 18 | 0.325 |
| 19 | 19 | 0.239 |
| 2 | 2 | 0.701 |
| 20 | 20 | 0.978 |
| 21 | 21 | 0.67 |
| 22 | 22 | 0.285 |
| 23 | 23 | 0.111 |
| 24 | 24 | 0.211 |
| 25 | 25 | 0.72 |
| 26 | 26 | 0.394 |
| 27 | 27 | 0.384 |
| 28 | 28 | 0.278 |
| 29 | 29 | 0.95 |
| 3 | 3 | 0.755 |
| 30 | 30 | 0.474 |
| 31 | 31 | 0.752 |
| 32 | 32 | 0.468 |
| 33 | 33 | 0.283 |
| 34 | 34 | 0.0725 |
| 35 | 35 | 0.604 |
| 36 | 36 | 0.0653 |
| 37 | 37 | 0.357 |
| 38 | 38 | 0.261 |
| 39 | 39 | 0.556 |
| 4 | 4 | 0.375 |
| 40 | 40 | 0.0066 |
| 41 | 41 | 0.0309 |
| 42 | 42 | 0.385 |
| 43 | 43 | 0.449 |
| 44 | 44 | 0.299 |
| 45 | 45 | 0.193 |
| 46 | 46 | 0.082 |
| 47 | 47 | 0.359 |
| 48 | 48 | 0.0578 |
| 49 | 49 | 0.623 |
| 5 | 5 | 0.684 |
| 50 | 50 | 0.878 |
| 51 | 51 | 0.697 |
| 52 | 52 | 0.951 |
| 53 | 53 | 0.815 |
| 54 | 54 | 0.993 |
| 55 | 55 | 0.694 |
| 56 | 56 | 0.814 |
| 57 | 57 | 0.326 |
| 58 | 58 | 0.362 |
| 59 | 59 | 0.0654 |
| 6 | 6 | 0.344 |
| 60 | 60 | 0.526 |
| 61 | 61 | 0.853 |
| 62 | 62 | 0.815 |
| 63 | 63 | 0.411 |
| 64 | 64 | 0.45 |
| 65 | 65 | 0.182 |
| 66 | 66 | 0.0434 |
| 67 | 67 | 0.779 |
| 68 | 68 | 0.0676 |
| 69 | 69 | 0.374 |
| 7 | 7 | 0.184 |
| 70 | 70 | 0.921 |
| 71 | 71 | 0.601 |
| 72 | 72 | 0.913 |
| 73 | 73 | 0.00958 |
| 74 | 74 | 0.277 |
| 75 | 75 | 0.491 |
| 76 | 76 | 0.482 |
| 77 | 77 | 0.309 |
| 78 | 78 | 0.755 |
| 79 | 79 | 0.946 |
| 8 | 8 | 0.02 |
| 80 | 80 | 0.0987 |
| 81 | 81 | 0.516 |
| 82 | 82 | 0.831 |
| 83 | 83 | 0.652 |
| 84 | 84 | 0.136 |
| 85 | 85 | 0.351 |
| 86 | 86 | 0.697 |
| 87 | 87 | 0.134 |
| 88 | 88 | 0.656 |
| 89 | 89 | 0.285 |
| 9 | 9 | 0.082 |
| 90 | 90 | 0.478 |
| 91 | 91 | 0.163 |
| 92 | 92 | 0.55 |
| 93 | 93 | 0.548 |
| 94 | 94 | 0.988 |
| 95 | 95 | 0.277 |
| 96 | 96 | 0.209 |
| 97 | 97 | 0.47 |
| 98 | 98 | 0.147 |
| 99 | 99 | 0.0257 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11377
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000052 human endothelial cell of the vein sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
