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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004806
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004806
|accession_numbers=CAGE;DRX008235;DRR009107;DRZ000532;DRZ001917;DRZ011882;DRZ013267
|accession_numbers_RNASeq=sRNA-Seq;DRX037118;DRR041484;DRZ007126
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.59!506.91!SOX18;;chr21:39870339..39870443,-!p1@ERG!2.11!128.15!ERG;;chr6:34204921..34204939,+!p3@HMGA1!2.01!2853.49!HMGA1;;chr8:10588010..10588030,-!p1@SOX7!1.94!85.43!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.90!78.79!SOX17;;chr18:53068911..53068935,-!p4@TCF4!1.75!62.65!TCF4;;chr17:6926362..6926377,+!p1@BCL6B!1.75!55.06!BCL6B;;chr19:13213511..13213545,-!p2@LYL1!1.62!43.67!LYL1;;chr22:19748231..19748317,+!p1@TBX1!1.55!34.17!TBX1;;chr12:96588368..96588394,+!p3@ELK3!1.52!83.54!ELK3;;chr1:6479968..6479986,-!p1@HES2!1.39!23.73!HES2;;chr17:41622925..41622976,-!p3@ETV4!1.36!32.28!ETV4;;chr16:86600426..86600441,+!p1@FOXC2!1.33!49.36!FOXC2;;chr11:65429891..65429915,-!p7@RELA!1.23!16.14!RELA;;chr17:46682321..46682362,-!p1@HOXB6!1.21!15.19!HOXB6;;chr9:124991204..124991246,-!p1@LHX6!1.21!15.19!LHX6;;chr7:27205106..27205134,-!p2@HOXA9!1.16!13.29!HOXA9;;chr20:50721803..50721857,-!p2@ZFP64!1.15!20.88!ZFP64;;chr4:57522166..57522260,-!p2@HOPX!1.15!15.19!HOPX;;chr10:8096631..8096660,+!p1@GATA3!1.11!14.24!GATA3;;chr7:27205136..27205164,-!p1@HOXA9!1.09!11.39!HOXA9;;chr19:13213399..13213414,-!p6@LYL1!1.09!11.39!LYL1;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.46!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.43!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.24!HOXB7;;chr17:46691732..46691766,-!p4@HOXB8!1.02!9.49!HOXB8;;chr3:128206762..128206781,-!p2@GATA2!1.00!56.96!GATA2;;chr18:22932080..22932170,-!p1@ZNF521!0.99!37.97!ZNF521;;chr10:8096772..8096787,+!p2@GATA3!0.99!10.44!GATA3;;chr10:31288370..31288393,-!p3@ZNF438!0.98!8.54!ZNF438;;chr10:94449703..94449718,+!p1@HHEX!0.97!33.22!HHEX;;chr19:13213662..13213686,-!p1@LYL1!0.97!12.34!LYL1;;chr15:90544532..90544563,+!p1@ZNF710!0.95!16.14!ZNF710;;chr1:214161272..214161322,+!p1@PROX1!0.95!11.39!PROX1;;chr11:65667846..65667868,-!p1@FOSL1!0.94!210.74!FOSL1;;chr17:46655672..46655697,-!p3@HOXB4!0.93!7.59!HOXB4;;chr18:53068982..53068993,-!p20@TCF4!0.93!7.59!TCF4;;chr6:34204973..34204990,+!p4@HMGA1!0.91!99.67!HMGA1;;chr11:65430554..65430579,-!p3@RELA!0.89!18.04!RELA;;chr1:151032922..151032951,+!p2@MLLT11!0.89!11.39!MLLT11;;chr17:46655704..46655718,-!p2@HOXB4!0.89!10.44!HOXB4;;chr16:30406423..30406447,+!p4@ZNF48!0.88!6.64!ZNF48;;chr7:139741594..139741615,-!p5@PARP12!0.88!6.64!PARP12;;chr1:151032860..151032918,+!p1@MLLT11!0.87!79.74!MLLT11;;chr20:42295713..42295738,+!p2@MYBL2!0.87!39.87!MYBL2;;chr10:8095593..8095625,+!p3@GATA3!0.87!7.59!GATA3;;chr6:34204672..34204692,+!p1@HMGA1!0.86!745.17!HMGA1;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.63!FOSL1;;chr5:92918919..92918942,+!p1@NR2F1!0.85!28.48!NR2F1;;chr2:85360499..85360598,+!p1@TCF7L1!0.84!35.12!TCF7L1;;chr2:16082155..16082169,+!p3@MYCN!0.83!5.70!MYCN;;chr2:177053386..177053402,+!p1@HOXD1!0.83!5.70!HOXD1;;chr7:139741849..139741879,-!p12@PARP12!0.83!5.70!PARP12;;chr17:8027418..8027432,-!p1@HES7!0.83!5.70!HES7;;chr18:53177984..53178004,-!p17@TCF4!0.83!5.70!TCF4;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.70!BNC2;;chr20:42295745..42295765,+!p1@MYBL2!0.82!97.77!MYBL2;;chr12:66218183..66218209,+!p4@HMGA2!0.82!11.39!HMGA2;;chr3:168864315..168864339,-!p2@MECOM!0.82!9.49!MECOM;;chr2:101436564..101436647,+!p1@NPAS2!0.81!119.61!NPAS2;;chr17:41622765..41622821,-!p2@ETV4!0.81!8.54!ETV4;;chr17:41622834..41622883,-!p6@ETV4!0.81!6.64!ETV4;;chr12:124873357..124873401,-!p1@NCOR2!0.80!67.40!NCOR2;;chr10:94449675..94449694,+!p2@HHEX!0.80!15.19!HHEX;;chr19:45908292..45908374,-!p1@PPP1R13L!0.79!49.36!PPP1R13L;;chr12:66218836..66218888,+!p1@HMGA2!0.78!51.26!HMGA2;;chr9:14314131..14314147,-!p2@NFIB!0.78!30.38!NFIB;;chr11:65430535..65430549,-!p4@RELA!0.76!5.70!RELA;;chr19:13213465..13213478,-!p7@LYL1!0.76!4.75!LYL1;;chr7:27153454..27153469,-!p2@HOXA3!0.76!4.75!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.76!4.75!HOXA5;;chr7:27195867..27195893,-!p3@HOXA7!0.76!4.75!HOXA7;;chr7:27224842..27224872,-!p1@HOXA11!0.76!4.75!HOXA11;;chr8:55370720..55370733,+!p2@SOX17!0.76!4.75!SOX17;;chr1:47695003..47695042,-!p2@TAL1!0.76!4.75!TAL1;;chr1:47696918..47696935,-!p6@TAL1!0.76!4.75!TAL1;;chr2:177001290..177001315,+!p1@HOXD3!0.76!4.75!HOXD3;;chr4:57522598..57522664,-!p3@HOPX!0.76!4.75!HOPX;;chr6:21593973..21593988,+!p1@SOX4!0.75!187.01!SOX4;;chr17:46687959..46688007,-!p2@HOXB7!0.75!6.64!HOXB7;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!37.02!ZMAT3;;chr13:72441315..72441454,-!p1@DACH1!0.74!9.49!DACH1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.73!350.28!TAX1BP3;;chr17:4890695..4890773,-!p2@CAMTA2!0.73!15.19!CAMTA2;;chr20:42543506..42543549,+!p2@TOX2!0.73!11.39!TOX2;;chr1:8938709..8938720,-!p3@ENO1!0.70!222.13!ENO1;;chr6:85474299..85474324,-!p1@TBX18!0.70!7.59!TBX18;;chr11:47237922..47237964,+!p4@DDB2!0.70!4.75!DDB2;;chr12:49454026..49454049,-!p9@MLL2!0.70!4.75!MLL2;;chr20:42543441..42543497,+!p1@TOX2!0.69!19.93!TOX2;;chr8:106330656..106330684,+!p1@ZFPM2!0.69!11.39!ZFPM2;;chr17:7590797..7590815,-!p1@TP53!0.68!188.90!TP53;;chr18:19749541..19749557,+!p1@GATA6!0.68!13.29!GATA6;;chr16:1720809..1720814,+!p6@CRAMP1L!0.68!3.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|fonse_cell_line=
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Line 38: Line 44:
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|id=FF:11344-117G3
|id=FF:11344-117G3
|is_a=EFO:0002091;;FF:0000052
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|library_id=CNhs11377
|library_id_phase_based=2:CNhs11377
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11344
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.AGTCAA.11344
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|name=Endothelial Cells - Vein, donor2
|name=Endothelial Cells - Vein, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 65:
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Line 61: Line 82:
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|sample_age=Neonatal
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|sample_cell_line=
Line 83: Line 106:
|top_motifs=SOX{8,9,10}:2.54942126259;PAX1,9:1.38573200456;AR:1.29335170818;SPZ1:1.2717178966;PAX8:1.23470499633;GATA6:1.18561123727;TLX1..3_NFIC{dimer}:1.14498135346;HBP1_HMGB_SSRP1_UBTF:1.08474333439;RXR{A,B,G}:1.04931851363;SOX2:1.03950375822;TFAP2{A,C}:1.0192047986;FOX{I1,J2}:1.01780227344;ZNF148:0.929482675712;POU2F1..3:0.922011506509;LEF1_TCF7_TCF7L1,2:0.909874529765;bHLH_family:0.898979959699;GTF2A1,2:0.896389693527;ETS1,2:0.826918360623;MYOD1:0.73535213411;NFATC1..3:0.728037222055;ONECUT1,2:0.710870496797;ZNF423:0.68654080036;TP53:0.673038790506;HOX{A5,B5}:0.666625558766;PBX1:0.666240557953;HES1:0.657076243321;RORA:0.644284090082;SPIB:0.634659779479;NANOG:0.628788320269;HAND1,2:0.624780518084;STAT5{A,B}:0.623103636518;NR3C1:0.619282384393;EN1,2:0.617794430335;NFE2:0.609640949647;CRX:0.585632604197;BACH2:0.571187425159;XCPE1{core}:0.53493748297;GFI1B:0.533725480985;HIC1:0.513085009259;IKZF1:0.502613905224;POU3F1..4:0.492802266949;GZF1:0.47082743927;ELF1,2,4:0.437600496036;NR5A1,2:0.429730115276;FOSL2:0.399142923099;FOS_FOS{B,L1}_JUN{B,D}:0.364104736498;TFDP1:0.36113947523;ZBTB6:0.360583292512;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.329705255425;ZNF238:0.311434033106;TFAP4:0.311315703323;ALX1:0.302450888487;SOX17:0.298186483581;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.289587914365;GFI1:0.279790900324;POU6F1:0.279731778986;REST:0.278180870147;TBP:0.276018246881;ARID5B:0.265643105737;MYB:0.249341635689;TEAD1:0.218601854191;LHX3,4:0.214281548517;PAX2:0.212633343034;SRF:0.197142532611;EBF1:0.176850867299;LMO2:0.162224532427;PAX5:0.15214649918;PAX6:0.147563438688;NFY{A,B,C}:0.133369973458;GLI1..3:0.132987110784;ESRRA:0.126722028266;FOXA2:0.125841045872;ZFP161:0.11674459832;TFAP2B:0.109781943775;NHLH1,2:0.0933630242139;STAT2,4,6:0.0823799634354;SMAD1..7,9:0.0723246155203;HNF4A_NR2F1,2:0.0717044628918;PRRX1,2:0.0474473552429;RBPJ:-0.00221325642478;NKX2-2,8:-0.0185427760105;E2F1..5:-0.0225908721299;T:-0.027200760338;IKZF2:-0.0360115777563;GTF2I:-0.0385568725685;CUX2:-0.0400036423215;FOXL1:-0.0438783922387;MEF2{A,B,C,D}:-0.0785242153458;FOXQ1:-0.0799017069823;NFE2L1:-0.0823801008762;MED-1{core}:-0.0834794002012;NFE2L2:-0.0897479922891;ESR1:-0.0920699693794;HMX1:-0.0952961416147;POU1F1:-0.103044202487;SOX5:-0.106219110473;NR6A1:-0.108018262806;SPI1:-0.109250427167;NKX2-3_NKX2-5:-0.110397806825;SP1:-0.118342861866;ADNP_IRX_SIX_ZHX:-0.126545561544;YY1:-0.135715142207;ZNF143:-0.137582119531;HNF1A:-0.167491905595;ZIC1..3:-0.186914893234;OCT4_SOX2{dimer}:-0.191700853994;EGR1..3:-0.219520604319;HOXA9_MEIS1:-0.225748843164;JUN:-0.247042262407;ATF2:-0.25338180698;NANOG{mouse}:-0.256514927349;GATA4:-0.269196620122;RFX1:-0.272085164572;MAFB:-0.298561583954;MTE{core}:-0.315448831695;MZF1:-0.320598402022;NRF1:-0.324777881309;TFCP2:-0.325659304864;PATZ1:-0.328672924918;VSX1,2:-0.336565909462;PITX1..3:-0.342919502842;TEF:-0.348475605271;RUNX1..3:-0.359095986009;NFKB1_REL_RELA:-0.36369911075;NR1H4:-0.364145065995;HLF:-0.371441955626;RXRA_VDR{dimer}:-0.374245072007;GCM1,2:-0.411200814578;RREB1:-0.422754270506;PRDM1:-0.43175791676;CEBPA,B_DDIT3:-0.435838259079;ALX4:-0.450735482154;SNAI1..3:-0.45715738826;TAL1_TCF{3,4,12}:-0.486269287217;FOX{F1,F2,J1}:-0.490371485621;UFEwm:-0.500987572657;PPARG:-0.517742839225;ZEB1:-0.530872315901;FOXM1:-0.569909676692;HIF1A:-0.571509046636;POU5F1:-0.587892460741;PAX3,7:-0.594433705847;MTF1:-0.613871691851;MAZ:-0.634829193766;STAT1,3:-0.696354258674;ATF6:-0.709843997117;TGIF1:-0.720731365138;BREu{core}:-0.736808581795;KLF4:-0.743735188777;FOX{D1,D2}:-0.744035109098;MYFfamily:-0.760701846475;TBX4,5:-0.76366988729;ELK1,4_GABP{A,B1}:-0.765085029578;SREBF1,2:-0.773361734058;DBP:-0.785939474295;EP300:-0.786499273376;TOPORS:-0.800088372674;FOXN1:-0.800585058836;HMGA1,2:-0.804854070386;ATF5_CREB3:-0.80601011389;RFX2..5_RFXANK_RFXAP:-0.814292091711;PDX1:-0.818609492993;EVI1:-0.83723550881;XBP1:-0.839327452087;IRF7:-0.862269650161;HOX{A6,A7,B6,B7}:-0.862712775509;IRF1,2:-0.872179743487;DMAP1_NCOR{1,2}_SMARC:-0.87590627524;FOXD3:-0.886948585554;NFIL3:-0.907565695318;CDC5L:-0.920954948798;CREB1:-0.92815963285;NFIX:-0.985742422941;BPTF:-0.998268675373;HSF1,2:-1.01664552853;ATF4:-1.03796036432;AHR_ARNT_ARNT2:-1.12707040625;ZNF384:-1.13602255862;MYBL2:-1.1469072761;PAX4:-1.15485130853;FOXO1,3,4:-1.20561189245;TLX2:-1.22995244988;NKX3-2:-1.23920758306;FOXP3:-1.25279585734;AIRE:-1.34568366792;NKX6-1,2:-1.39176649783;HOX{A4,D4}:-1.41438217378;ZBTB16:-1.44106611451;FOXP1:-1.50430241503;NKX2-1,4:-1.60623103101;CDX1,2,4:-1.68737811102;NKX3-1:-2.2095918003
|top_motifs=SOX{8,9,10}:2.54942126259;PAX1,9:1.38573200456;AR:1.29335170818;SPZ1:1.2717178966;PAX8:1.23470499633;GATA6:1.18561123727;TLX1..3_NFIC{dimer}:1.14498135346;HBP1_HMGB_SSRP1_UBTF:1.08474333439;RXR{A,B,G}:1.04931851363;SOX2:1.03950375822;TFAP2{A,C}:1.0192047986;FOX{I1,J2}:1.01780227344;ZNF148:0.929482675712;POU2F1..3:0.922011506509;LEF1_TCF7_TCF7L1,2:0.909874529765;bHLH_family:0.898979959699;GTF2A1,2:0.896389693527;ETS1,2:0.826918360623;MYOD1:0.73535213411;NFATC1..3:0.728037222055;ONECUT1,2:0.710870496797;ZNF423:0.68654080036;TP53:0.673038790506;HOX{A5,B5}:0.666625558766;PBX1:0.666240557953;HES1:0.657076243321;RORA:0.644284090082;SPIB:0.634659779479;NANOG:0.628788320269;HAND1,2:0.624780518084;STAT5{A,B}:0.623103636518;NR3C1:0.619282384393;EN1,2:0.617794430335;NFE2:0.609640949647;CRX:0.585632604197;BACH2:0.571187425159;XCPE1{core}:0.53493748297;GFI1B:0.533725480985;HIC1:0.513085009259;IKZF1:0.502613905224;POU3F1..4:0.492802266949;GZF1:0.47082743927;ELF1,2,4:0.437600496036;NR5A1,2:0.429730115276;FOSL2:0.399142923099;FOS_FOS{B,L1}_JUN{B,D}:0.364104736498;TFDP1:0.36113947523;ZBTB6:0.360583292512;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.329705255425;ZNF238:0.311434033106;TFAP4:0.311315703323;ALX1:0.302450888487;SOX17:0.298186483581;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.289587914365;GFI1:0.279790900324;POU6F1:0.279731778986;REST:0.278180870147;TBP:0.276018246881;ARID5B:0.265643105737;MYB:0.249341635689;TEAD1:0.218601854191;LHX3,4:0.214281548517;PAX2:0.212633343034;SRF:0.197142532611;EBF1:0.176850867299;LMO2:0.162224532427;PAX5:0.15214649918;PAX6:0.147563438688;NFY{A,B,C}:0.133369973458;GLI1..3:0.132987110784;ESRRA:0.126722028266;FOXA2:0.125841045872;ZFP161:0.11674459832;TFAP2B:0.109781943775;NHLH1,2:0.0933630242139;STAT2,4,6:0.0823799634354;SMAD1..7,9:0.0723246155203;HNF4A_NR2F1,2:0.0717044628918;PRRX1,2:0.0474473552429;RBPJ:-0.00221325642478;NKX2-2,8:-0.0185427760105;E2F1..5:-0.0225908721299;T:-0.027200760338;IKZF2:-0.0360115777563;GTF2I:-0.0385568725685;CUX2:-0.0400036423215;FOXL1:-0.0438783922387;MEF2{A,B,C,D}:-0.0785242153458;FOXQ1:-0.0799017069823;NFE2L1:-0.0823801008762;MED-1{core}:-0.0834794002012;NFE2L2:-0.0897479922891;ESR1:-0.0920699693794;HMX1:-0.0952961416147;POU1F1:-0.103044202487;SOX5:-0.106219110473;NR6A1:-0.108018262806;SPI1:-0.109250427167;NKX2-3_NKX2-5:-0.110397806825;SP1:-0.118342861866;ADNP_IRX_SIX_ZHX:-0.126545561544;YY1:-0.135715142207;ZNF143:-0.137582119531;HNF1A:-0.167491905595;ZIC1..3:-0.186914893234;OCT4_SOX2{dimer}:-0.191700853994;EGR1..3:-0.219520604319;HOXA9_MEIS1:-0.225748843164;JUN:-0.247042262407;ATF2:-0.25338180698;NANOG{mouse}:-0.256514927349;GATA4:-0.269196620122;RFX1:-0.272085164572;MAFB:-0.298561583954;MTE{core}:-0.315448831695;MZF1:-0.320598402022;NRF1:-0.324777881309;TFCP2:-0.325659304864;PATZ1:-0.328672924918;VSX1,2:-0.336565909462;PITX1..3:-0.342919502842;TEF:-0.348475605271;RUNX1..3:-0.359095986009;NFKB1_REL_RELA:-0.36369911075;NR1H4:-0.364145065995;HLF:-0.371441955626;RXRA_VDR{dimer}:-0.374245072007;GCM1,2:-0.411200814578;RREB1:-0.422754270506;PRDM1:-0.43175791676;CEBPA,B_DDIT3:-0.435838259079;ALX4:-0.450735482154;SNAI1..3:-0.45715738826;TAL1_TCF{3,4,12}:-0.486269287217;FOX{F1,F2,J1}:-0.490371485621;UFEwm:-0.500987572657;PPARG:-0.517742839225;ZEB1:-0.530872315901;FOXM1:-0.569909676692;HIF1A:-0.571509046636;POU5F1:-0.587892460741;PAX3,7:-0.594433705847;MTF1:-0.613871691851;MAZ:-0.634829193766;STAT1,3:-0.696354258674;ATF6:-0.709843997117;TGIF1:-0.720731365138;BREu{core}:-0.736808581795;KLF4:-0.743735188777;FOX{D1,D2}:-0.744035109098;MYFfamily:-0.760701846475;TBX4,5:-0.76366988729;ELK1,4_GABP{A,B1}:-0.765085029578;SREBF1,2:-0.773361734058;DBP:-0.785939474295;EP300:-0.786499273376;TOPORS:-0.800088372674;FOXN1:-0.800585058836;HMGA1,2:-0.804854070386;ATF5_CREB3:-0.80601011389;RFX2..5_RFXANK_RFXAP:-0.814292091711;PDX1:-0.818609492993;EVI1:-0.83723550881;XBP1:-0.839327452087;IRF7:-0.862269650161;HOX{A6,A7,B6,B7}:-0.862712775509;IRF1,2:-0.872179743487;DMAP1_NCOR{1,2}_SMARC:-0.87590627524;FOXD3:-0.886948585554;NFIL3:-0.907565695318;CDC5L:-0.920954948798;CREB1:-0.92815963285;NFIX:-0.985742422941;BPTF:-0.998268675373;HSF1,2:-1.01664552853;ATF4:-1.03796036432;AHR_ARNT_ARNT2:-1.12707040625;ZNF384:-1.13602255862;MYBL2:-1.1469072761;PAX4:-1.15485130853;FOXO1,3,4:-1.20561189245;TLX2:-1.22995244988;NKX3-2:-1.23920758306;FOXP3:-1.25279585734;AIRE:-1.34568366792;NKX6-1,2:-1.39176649783;HOX{A4,D4}:-1.41438217378;ZBTB16:-1.44106611451;FOXP1:-1.50430241503;NKX2-1,4:-1.60623103101;CDX1,2,4:-1.68737811102;NKX3-1:-2.2095918003
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11344-117G3;search_select_hide=table117:FF:11344-117G3
}}
}}

Latest revision as of 17:53, 4 June 2020

Name:Endothelial Cells - Vein, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11377
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuevein
dev stageinfant
sexmale
ageNeonatal
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1643
catalog numberCA200-R10n
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004806
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11377 CAGE DRX008235 DRR009107
Accession ID Hg19

Library idBAMCTSS
CNhs11377 DRZ000532 DRZ001917
Accession ID Hg38

Library idBAMCTSS
CNhs11377 DRZ011882 DRZ013267
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004806
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.AGTCAA sRNA-Seq DRX037118 DRR041484
Accession ID Hg19

Library idBAMCTSS
SRhi10008.AGTCAA DRZ007126


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.17
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0166
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.234
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.29
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.241
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.317
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.398
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.909
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0221
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.367
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.462
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11377

Jaspar motifP-value
MA0002.20.547
MA0003.10.127
MA0004.10.333
MA0006.10.156
MA0007.10.0124
MA0009.10.969
MA0014.10.992
MA0017.10.105
MA0018.20.00418
MA0019.10.0795
MA0024.10.213
MA0025.10.481
MA0027.10.954
MA0028.10.102
MA0029.10.319
MA0030.10.914
MA0031.10.34
MA0035.29.86183e-4
MA0038.10.284
MA0039.20.677
MA0040.10.406
MA0041.10.287
MA0042.10.663
MA0043.17.45945e-5
MA0046.10.174
MA0047.20.245
MA0048.10.481
MA0050.18.26333e-5
MA0051.10.0216
MA0052.10.235
MA0055.10.0737
MA0057.10.364
MA0058.10.321
MA0059.10.0462
MA0060.10.00204
MA0061.10.606
MA0062.20.0457
MA0065.20.174
MA0066.10.871
MA0067.10.19
MA0068.10.0494
MA0069.10.417
MA0070.10.426
MA0071.10.331
MA0072.10.481
MA0073.10.19
MA0074.10.811
MA0076.10.00418
MA0077.17.9121e-6
MA0078.10.00482
MA0079.20.839
MA0080.21.97242e-4
MA0081.10.0586
MA0083.10.0344
MA0084.10.312
MA0087.10.24
MA0088.10.25
MA0090.10.375
MA0091.10.717
MA0092.10.542
MA0093.10.309
MA0099.21.98138e-20
MA0100.10.214
MA0101.10.855
MA0102.26.31832e-4
MA0103.10.378
MA0104.20.488
MA0105.10.819
MA0106.10.00297
MA0107.10.811
MA0108.25.42254e-5
MA0111.10.811
MA0112.20.16
MA0113.10.17
MA0114.10.643
MA0115.10.436
MA0116.10.279
MA0117.10.536
MA0119.10.0931
MA0122.10.185
MA0124.10.236
MA0125.10.577
MA0131.10.332
MA0135.10.325
MA0136.10.0322
MA0137.20.182
MA0138.20.649
MA0139.10.222
MA0140.11.50826e-4
MA0141.10.0476
MA0142.10.193
MA0143.10.418
MA0144.10.911
MA0145.10.0556
MA0146.10.68
MA0147.10.157
MA0148.10.0965
MA0149.10.0429
MA0150.10.00557
MA0152.10.568
MA0153.10.329
MA0154.10.22
MA0155.10.0404
MA0156.10.0343
MA0157.10.816
MA0159.10.452
MA0160.10.141
MA0162.10.0571
MA0163.10.215
MA0164.10.396
MA0258.10.453
MA0259.10.985



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11377

Novel motifP-value
10.5
100.265
1000.929
1010.368
1020.728
1030.967
1040.747
1050.465
1060.0558
1070.0721
1080.83
1090.171
110.0791
1100.0327
1110.538
1120.913
1130.317
1140.258
1150.613
1160.679
1170.51
1180.721
1190.356
120.0653
1200.00551
1210.641
1220.283
1230.104
1240.915
1250.575
1260.533
1270.484
1280.551
1290.106
130.305
1300.302
1310.394
1320.822
1330.356
1340.761
1350.0303
1360.359
1370.232
1380.696
1390.458
140.884
1400.248
1410.132
1420.659
1430.0314
1440.41
1450.0308
1460.0496
1470.15
1480.246
1490.0499
150.253
1500.125
1510.824
1520.0756
1530.536
1540.418
1550.919
1560.0505
1570.473
1580.551
1590.698
160.861
1600.0297
1610.634
1620.632
1630.571
1640.739
1650.724
1660.144
1670.0519
1680.996
1690.0394
170.144
180.325
190.239
20.701
200.978
210.67
220.285
230.111
240.211
250.72
260.394
270.384
280.278
290.95
30.755
300.474
310.752
320.468
330.283
340.0725
350.604
360.0653
370.357
380.261
390.556
40.375
400.0066
410.0309
420.385
430.449
440.299
450.193
460.082
470.359
480.0578
490.623
50.684
500.878
510.697
520.951
530.815
540.993
550.694
560.814
570.326
580.362
590.0654
60.344
600.526
610.853
620.815
630.411
640.45
650.182
660.0434
670.779
680.0676
690.374
70.184
700.921
710.601
720.913
730.00958
740.277
750.491
760.482
770.309
780.755
790.946
80.02
800.0987
810.516
820.831
830.652
840.136
850.351
860.697
870.134
880.656
890.285
90.082
900.478
910.163
920.55
930.548
940.988
950.277
960.209
970.47
980.147
990.0257



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11377


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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