FF:11343-117G2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004966 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004966 | ||
|accession_numbers=CAGE;DRX008230;DRR009102;DRZ000527;DRZ001912;DRZ011877;DRZ013262 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037078;DRR041444;DRZ007086 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0004573,UBERON:0000487,UBERON:0005800,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001515,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544,CL:0002545 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000048,FF:0000001,FF:0000051 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.49!400.21!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.27!184.71!SOX17;;chr21:39870339..39870443,-!p1@ERG!2.10!124.76!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.93!84.25!SOX7;;chr22:19748231..19748317,+!p1@TBX1!1.92!81.82!TBX1;;chr2:177053386..177053402,+!p1@HOXD1!1.88!75.34!HOXD1;;chr17:6926362..6926377,+!p1@BCL6B!1.88!74.53!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.85!70.48!HES2;;chr19:13213511..13213545,-!p2@LYL1!1.65!47.80!LYL1;;chr12:96588368..96588394,+!p3@ELK3!1.53!86.69!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.46!31.60!TCF4;;chr6:126070769..126070801,+!p1@HEY2!1.44!30.79!HEY2;;chr10:94449703..94449718,+!p1@HHEX!1.43!97.22!HHEX;;chr16:86600426..86600441,+!p1@FOXC2!1.43!62.38!FOXC2;;chr19:13213662..13213686,-!p1@LYL1!1.38!34.03!LYL1;;chr19:13213399..13213414,-!p6@LYL1!1.31!19.44!LYL1;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.01!HOXA9;;chr1:209979467..209979494,-!p1@IRF6!1.17!15.39!IRF6;;chr17:46655672..46655697,-!p3@HOXB4!1.17!13.77!HOXB4;;chr17:46688334..46688385,-!p1@HOXB7!1.14!18.63!HOXB7;;chr20:62680671..62680679,-!p2@SOX18!1.09!11.34!SOX18;;chr6:34204921..34204939,+!p3@HMGA1!1.07!327.30!HMGA1;;chr11:65429891..65429915,-!p7@RELA!1.06!10.53!RELA;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.39!ETV4;;chr20:48599506..48599526,+!p1@SNAI1!1.01!60.76!SNAI1;;chr3:128206762..128206781,-!p2@GATA2!1.00!57.52!GATA2;;chr18:22932080..22932170,-!p1@ZNF521!1.00!38.89!ZNF521;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.91!HOXB6;;chr7:27205106..27205134,-!p2@HOXA9!1.00!8.91!HOXA9;;chr18:19749541..19749557,+!p1@GATA6!0.98!27.54!GATA6;;chr3:169381420..169381535,-!p1@MECOM!0.97!9.72!MECOM;;chr6:21593973..21593988,+!p1@SOX4!0.95!292.46!SOX4;;chr1:151032860..151032918,+!p1@MLLT11!0.94!93.98!MLLT11;;chr5:92918919..92918942,+!p1@NR2F1!0.93!34.84!NR2F1;;chr16:86601052..86601066,+!p4@FOXC2!0.92!7.29!FOXC2;;chr19:13213555..13213568,-!p5@LYL1!0.92!7.29!LYL1;;chr13:79177703..79177729,-!p2@POU4F1!0.92!7.29!POU4F1;;chr19:49865646..49865718,-!p1@TEAD2!0.91!63.19!TEAD2;;chr22:38597987..38598021,+!p2@MAFF!0.90!44.56!MAFF;;chr10:94449675..94449694,+!p2@HHEX!0.90!19.44!HHEX;;chr17:46655704..46655718,-!p2@HOXB4!0.90!10.53!HOXB4;;chr17:46687959..46688007,-!p2@HOXB7!0.90!9.72!HOXB7;;chr2:46524537..46524553,+!p1@EPAS1!0.89!703.20!EPAS1;;chr12:124873357..124873401,-!p1@NCOR2!0.89!81.82!NCOR2;;chr12:66218255..66218304,+!p3@HMGA2!0.88!18.63!HMGA2;;chr6:21594845..21594908,+!p6@SOX4!0.87!10.53!SOX4;;chr6:28321971..28321995,-!p1@ZNF323!0.87!6.48!ZNF323;;chr14:74256787..74256858,-!p6@C14orf43!0.87!6.48!C14orf43;;chr1:47695003..47695042,-!p2@TAL1!0.87!6.48!TAL1;;chr17:46690839..46690884,-!p1@HOXB8!0.87!6.48!HOXB8;;chr17:46691732..46691766,-!p4@HOXB8!0.87!6.48!HOXB8;;chr20:42543506..42543549,+!p2@TOX2!0.85!15.39!TOX2;;chr17:1958388..1958404,+!p1@HIC1!0.84!40.51!HIC1;;chr2:46602901..46602926,+!p7@EPAS1!0.84!8.10!EPAS1;;chr20:42543441..42543497,+!p1@TOX2!0.82!26.73!TOX2;;chr14:24837368..24837401,+!p1@NFATC4!0.82!13.77!NFATC4;;chr6:21597600..21597664,+!p3@SOX4!0.82!9.72!SOX4;;chr19:53496768..53496799,-!p1@ZNF702P!0.82!8.91!ZNF702P;;chr16:30406423..30406447,+!p4@ZNF48!0.82!5.67!ZNF48;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.67!FOXC2;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.67!HOXD8;;chr6:21597765..21597779,+!p2@SOX4!0.81!47.80!SOX4;;chr1:935467..935484,-!p1@HES4!0.80!25.11!HES4;;chr2:46602879..46602899,+!p8@EPAS1!0.80!6.48!EPAS1;;chr12:124873852..124873881,-!p3@NCOR2!0.79!34.03!NCOR2;;chr7:26191809..26191890,+!p1@NFE2L3!0.79!27.54!NFE2L3;;chr17:38498594..38498661,+!p2@RARA!0.79!18.63!RARA;;chr6:85474299..85474324,-!p1@TBX18!0.79!9.72!TBX18;;chr19:49864746..49864780,-!p2@TEAD2!0.79!7.29!TEAD2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!379.96!TAX1BP3;;chr6:21597370..21597408,+!p5@SOX4!0.77!8.10!SOX4;;chr3:25469724..25469773,+!p1@RARB!0.77!7.29!RARB;;chr3:169381183..169381205,-!p4@MECOM!0.77!4.86!MECOM;;chr7:27183291..27183324,-!p1@HOXA5!0.77!4.86!HOXA5;;chr8:55370720..55370733,+!p2@SOX17!0.77!4.86!SOX17;;chr16:86601088..86601105,+!p5@FOXC2!0.77!4.86!FOXC2;;chr19:13213465..13213478,-!p7@LYL1!0.77!4.86!LYL1;;chr19:9732460..9732472,-!p2@ZNF561!0.77!4.86!ZNF561;;chr9:16705069..16705086,-!p3@BNC2!0.77!4.86!BNC2;;chr4:2263809..2263854,-!p1@MXD4!0.76!204.16!MXD4;;chr14:74226961..74227020,-!p1@C14orf43!0.75!34.03!C14orf43;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.10!MECOM;;chr1:935496..935509,-!p3@HES4!0.75!7.29!HES4;;chr19:1652555..1652568,-!p2@TCF3!0.74!20.25!TCF3;;chr1:23885981..23886002,-!p1@ID3!0.72!841.74!ID3;;chr12:66218598..66218645,+!p2@HMGA2!0.72!21.87!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!0.72!12.15!NCOA7;;chr12:80084137..80084165,-!p10@PAWR!0.72!5.67!PAWR;;chr12:66218836..66218888,+!p1@HMGA2!0.71!43.75!HMGA2;;chr3:178789522..178789564,-!p2@ZMAT3!0.71!34.03!ZMAT3;;chr13:72441315..72441454,-!p1@DACH1!0.71!8.91!DACH1;;chr3:170076314..170076334,+!p2@SKIL!0.71!5.67!SKIL;;chr3:25469815..25469866,+!p3@RARB!0.70!4.05!RARB;;chr3:25470062..25470084,+!p4@RARB!0.70!4.05!RARB;;chr3:25470156..25470227,+!p2@RARB!0.70!4.05!RARB;;chr6:126070748..126070768,+!p2@HEY2!0.70!4.05!HEY2;;chr7:27192185..27192209,-!p1@HOXA3!0.70!4.05!HOXA3;;chr17:46622175..46622186,-!p12@HOXB2!0.70!4.05!HOXB2;;chr17:46687935..46687950,-!p3@HOXB7!0.70!4.05!HOXB7;;chr17:46688310..46688323,-!p4@HOXB7!0.70!4.05!HOXB7;;chr12:66218003..66218018,+!p9@HMGA2!0.69!4.86!HMGA2;;chr17:7590797..7590815,-!p1@TP53!0.68!191.19!TP53;;chr12:80084167..80084197,-!p5@PAWR!0.68!9.72!PAWR;;chr11:65430554..65430579,-!p3@RELA!0.67!10.53!RELA;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.63!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!0.66!4.05!HOXB2;;chr1:120190786..120190915,-!p1@ZNF697!0.65!29.17!ZNF697;;chr12:66218183..66218209,+!p4@HMGA2!0.65!7.29!HMGA2;;chr13:41240717..41240735,-!p2@FOXO1!0.64!26.73!FOXO1;;chr20:2673383..2673441,+!p1@EBF4!0.64!5.67!EBF4;;chr11:62368696..62368759,-!p4@MTA2!0.63!23.49!MTA2;;chr9:116638565..116638606,+!p1@ZNF618!0.63!16.20!ZNF618;;chr5:92918894..92918912,+!p2@NR2F1!0.63!12.15!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.63!3.24!NR2F1;;chr7:139741594..139741615,-!p5@PARP12!0.63!3.24!PARP12;;chr7:1577899..1577943,+!p3@MAFK!0.63!3.24!MAFK;;chr16:86600458..86600461,+!p3@FOXC2!0.63!3.24!FOXC2;;chr17:46659728..46659749,-!p3@HOXB3!0.63!3.24!HOXB3;;chr17:6926381..6926392,+!p2@BCL6B!0.63!3.24!BCL6B;;chr18:22932004..22932021,-!p2@ZNF521!0.63!3.24!ZNF521;;chr18:53068982..53068993,-!p20@TCF4!0.63!3.24!TCF4;;chr18:53256971..53256984,-!p26@TCF4!0.63!3.24!TCF4;;chr19:13213496..13213501,-!p10@LYL1!0.63!3.24!LYL1;;chr9:14083091..14083096,-!p12@NFIB!0.63!3.24!NFIB;;chrY:21906594..21906622,-!p1@KDM5D!0.63!3.24!KDM5D;;chr22:19747040..19747054,+!p3@TBX1!0.63!3.24!TBX1;;chr2:176987441..176987454,+!p1@HOXD9!0.63!3.24!HOXD9;;chr2:237077022..237077038,-!p1@GBX2!0.63!3.24!GBX2;;chr12:124873824..124873833,-!p19@NCOR2!0.63!3.24!NCOR2;;chr19:46801639..46801699,+!p1@HIF3A!0.63!3.24!HIF3A;;chr20:42602000..42602034,+!p5@TOX2!0.63!3.24!TOX2;;chr3:141087393..141087426,+!p3@ZBTB38!0.62!14.58!ZBTB38;;chr19:56152332..56152347,+!p4@ZNF580!0.62!8.10!ZNF580;;chr2:231280954..231280965,+!p2@SP100!0.62!6.48!SP100;;chr6:10415276..10415341,-!p2@TFAP2A!0.62!4.05!TFAP2A;;chr19:42759266..42759290,-!p1@ERF!0.61!119.09!ERF;;chr15:96873984..96873999,+!p3@NR2F2!0.61!26.73!NR2F2;;chr9:35732647..35732678,+!p2@CREB3!0.61!20.25!CREB3;;chr6:21597514..21597578,+!p4@SOX4!0.61!5.67!SOX4;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!31.60!PPP1R13L;;chr3:52001426..52001447,-!p3@PCBP4!0.60!9.72!PCBP4;;chr8:106330656..106330684,+!p1@ZFPM2!0.60!8.91!ZFPM2;;chr18:53257001..53257015,-!p5@TCF4!0.60!5.67!TCF4;;chr17:41623692..41623715,-!p1@ETV4!0.59!14.58!ETV4;;chr8:128749984..128750033,+!p4@MYC!0.59!12.15!MYC;;chr17:46622070..46622109,-!p1@HOXB2!0.59!7.29!HOXB2;;chr12:53574398..53574412,+!p3@ZNF740!0.59!5.67!ZNF740;;chr8:145159277..145159282,+!p7@MAF1!0.59!4.86!MAF1;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.86!HOXB2;;chr3:52001448..52001478,-!p2@PCBP4!0.58!47.80!PCBP4;;chr4:2263861..2263883,-!p2@MXD4!0.58!20.25!MXD4;;chr1:156470515..156470542,-!p2@MEF2D!0.58!17.82!MEF2D;;chr1:151032833..151032850,+!p3@MLLT11!0.58!7.29!MLLT11;;chr19:19303047..19303079,+!p3@RFXANK!0.58!7.29!RFXANK;;chr1:221052776..221052799,+!p1@HLX!0.58!5.67!HLX;;chr19:56671612..56671626,+!p4@ZNF444!0.58!4.86!ZNF444;;chr2:85360499..85360598,+!p1@TCF7L1!0.57!18.63!TCF7L1;;chr9:14314131..14314147,-!p2@NFIB!0.57!18.63!NFIB;;chr7:148892557..148892580,+!p4@ZNF282!0.57!8.91!ZNF282;;chr2:74375081..74375092,-!p2@BOLA3!0.57!6.48!BOLA3;;chr11:65430535..65430549,-!p4@RELA!0.57!3.24!RELA;;chr15:83953397..83953425,-!p1@BNC1!0.57!3.24!BNC1;;chr17:46622205..46622218,-!p3@HOXB2!0.57!3.24!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!0.57!3.24!HOXB6;;chr19:19303794..19303805,+!p5@RFXANK!0.57!3.24!RFXANK;;chr11:128563948..128564003,+!p1@FLI1!0.56!39.70!FLI1;;chr15:66994561..66994597,+!p2@SMAD6!0.56!7.29!SMAD6;;chr1:151032922..151032951,+!p2@MLLT11!0.56!4.86!MLLT11;;chr9:14082760..14082775,-!p6@NFIB!0.56!4.86!NFIB;;chr4:146436110..146436135,+!p6@SMAD1!0.56!4.05!SMAD1;;chr8:145159846..145159889,+!p6@MAF1!0.56!4.05!MAF1;;chr8:80679993..80680011,-!p1@HEY1!0.55!4.05!HEY1;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.24!TBX18;;chr17:41622834..41622883,-!p6@ETV4!0.55!3.24!ETV4;;chr19:19303731..19303783,+!p1@RFXANK!0.54!74.53!RFXANK;;chr7:149470641..149470694,-!p1@ZNF467!0.54!13.77!ZNF467;;chr19:56111680..56111716,+!p1@ZNF524!0.54!11.34!ZNF524;;chr1:151032782..151032801,+!p4@MLLT11!0.54!5.67!MLLT11;;chr15:90544532..90544563,+!p1@ZNF710!0.54!5.67!ZNF710;;chr1:151032739..151032748,+!p6@MLLT11!0.54!3.24!MLLT11;;chr6:43140095..43140145,+!p5@SRF!0.54!3.24!SRF;;chr7:27183263..27183284,-!p2@HOXA5!0.54!2.43!HOXA5;;chr7:35293685..35293718,-!p1@TBX20!0.54!2.43!TBX20;;chr8:30890810..30890880,-!p1@PURG!0.54!2.43!PURG;;chr8:55370884..55370896,+!p5@SOX17!0.54!2.43!SOX17;;chr15:66994523..66994541,+!p5@SMAD6!0.54!2.43!SMAD6;;chr18:53068893..53068902,-!p28@TCF4!0.54!2.43!TCF4;;chr19:13136057..13136085,+!p11@NFIX!0.54!2.43!NFIX;;chr12:66218420..66218439,+!p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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.49!400.21!SOX18;;chr8:55370487..55370503,+!p1@SOX17!2.27!184.71!SOX17;;chr21:39870339..39870443,-!p1@ERG!2.10!124.76!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.93!84.25!SOX7;;chr22:19748231..19748317,+!p1@TBX1!1.92!81.82!TBX1;;chr2:177053386..177053402,+!p1@HOXD1!1.88!75.34!HOXD1;;chr17:6926362..6926377,+!p1@BCL6B!1.88!74.53!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.85!70.48!HES2;;chr19:13213511..13213545,-!p2@LYL1!1.65!47.80!LYL1;;chr12:96588368..96588394,+!p3@ELK3!1.53!86.69!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.46!31.60!TCF4;;chr6:126070769..126070801,+!p1@HEY2!1.44!30.79!HEY2;;chr10:94449703..94449718,+!p1@HHEX!1.43!97.22!HHEX;;chr16:86600426..86600441,+!p1@FOXC2!1.43!62.38!FOXC2;;chr19:13213662..13213686,-!p1@LYL1!1.38!34.03!LYL1;;chr19:13213399..13213414,-!p6@LYL1!1.31!19.44!LYL1;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.01!HOXA9;;chr1:209979467..209979494,-!p1@IRF6!1.17!15.39!IRF6;;chr17:46655672..46655697,-!p3@HOXB4!1.17!13.77!HOXB4;;chr17:46688334..46688385,-!p1@HOXB7!1.14!18.63!HOXB7;;chr20:62680671..62680679,-!p2@SOX18!1.09!11.34!SOX18;;chr6:34204921..34204939,+!p3@HMGA1!1.07!327.30!HMGA1;;chr11:65429891..65429915,-!p7@RELA!1.06!10.53!RELA;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.39!ETV4;;chr20:48599506..48599526,+!p1@SNAI1!1.01!60.76!SNAI1;;chr3:128206762..128206781,-!p2@GATA2!1.00!57.52!GATA2;;chr18:22932080..22932170,-!p1@ZNF521!1.00!38.89!ZNF521;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.91!HOXB6;;chr7:27205106..27205134,-!p2@HOXA9!1.00!8.91!HOXA9;;chr18:19749541..19749557,+!p1@GATA6!0.98!27.54!GATA6;;chr3:169381420..169381535,-!p1@MECOM!0.97!9.72!MECOM;;chr6:21593973..21593988,+!p1@SOX4!0.95!292.46!SOX4;;chr1:151032860..151032918,+!p1@MLLT11!0.94!93.98!MLLT11;;chr5:92918919..92918942,+!p1@NR2F1!0.93!34.84!NR2F1;;chr16:86601052..86601066,+!p4@FOXC2!0.92!7.29!FOXC2;;chr19:13213555..13213568,-!p5@LYL1!0.92!7.29!LYL1;;chr13:79177703..79177729,-!p2@POU4F1!0.92!7.29!POU4F1;;chr19:49865646..49865718,-!p1@TEAD2!0.91!63.19!TEAD2;;chr22:38597987..38598021,+!p2@MAFF!0.90!44.56!MAFF;;chr10:94449675..94449694,+!p2@HHEX!0.90!19.44!HHEX;;chr17:46655704..46655718,-!p2@HOXB4!0.90!10.53!HOXB4;;chr17:46687959..46688007,-!p2@HOXB7!0.90!9.72!HOXB7;;chr2:46524537..46524553,+!p1@EPAS1!0.89!703.20!EPAS1;;chr12:124873357..124873401,-!p1@NCOR2!0.89!81.82!NCOR2;;chr12:66218255..66218304,+!p3@HMGA2!0.88!18.63!HMGA2;;chr6:21594845..21594908,+!p6@SOX4!0.87!10.53!SOX4;;chr6:28321971..28321995,-!p1@ZNF323!0.87!6.48!ZNF323;;chr14:74256787..74256858,-!p6@C14orf43!0.87!6.48!C14orf43;;chr1:47695003..47695042,-!p2@TAL1!0.87!6.48!TAL1;;chr17:46690839..46690884,-!p1@HOXB8!0.87!6.48!HOXB8;;chr17:46691732..46691766,-!p4@HOXB8!0.87!6.48!HOXB8;;chr20:42543506..42543549,+!p2@TOX2!0.85!15.39!TOX2;;chr17:1958388..1958404,+!p1@HIC1!0.84!40.51!HIC1;;chr2:46602901..46602926,+!p7@EPAS1!0.84!8.10!EPAS1;;chr20:42543441..42543497,+!p1@TOX2!0.82!26.73!TOX2;;chr14:24837368..24837401,+!p1@NFATC4!0.82!13.77!NFATC4;;chr6:21597600..21597664,+!p3@SOX4!0.82!9.72!SOX4;;chr19:53496768..53496799,-!p1@ZNF702P!0.82!8.91!ZNF702P;;chr16:30406423..30406447,+!p4@ZNF48!0.82!5.67!ZNF48;;chr16:86600870..86600921,+!p2@FOXC2!0.82!5.67!FOXC2;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.67!HOXD8;;chr6:21597765..21597779,+!p2@SOX4!0.81!47.80!SOX4;;chr1:935467..935484,-!p1@HES4!0.80!25.11!HES4;;chr2:46602879..46602899,+!p8@EPAS1!0.80!6.48!EPAS1;;chr12:124873852..124873881,-!p3@NCOR2!0.79!34.03!NCOR2;;chr7:26191809..26191890,+!p1@NFE2L3!0.79!27.54!NFE2L3;;chr17:38498594..38498661,+!p2@RARA!0.79!18.63!RARA;;chr6:85474299..85474324,-!p1@TBX18!0.79!9.72!TBX18;;chr19:49864746..49864780,-!p2@TEAD2!0.79!7.29!TEAD2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!379.96!TAX1BP3;;chr6:21597370..21597408,+!p5@SOX4!0.77!8.10!SOX4;;chr3:25469724..25469773,+!p1@RARB!0.77!7.29!RARB;;chr3:169381183..169381205,-!p4@MECOM!0.77!4.86!MECOM;;chr7:27183291..27183324,-!p1@HOXA5!0.77!4.86!HOXA5;;chr8:55370720..55370733,+!p2@SOX17!0.77!4.86!SOX17;;chr16:86601088..86601105,+!p5@FOXC2!0.77!4.86!FOXC2;;chr19:13213465..13213478,-!p7@LYL1!0.77!4.86!LYL1;;chr19:9732460..9732472,-!p2@ZNF561!0.77!4.86!ZNF561;;chr9:16705069..16705086,-!p3@BNC2!0.77!4.86!BNC2;;chr4:2263809..2263854,-!p1@MXD4!0.76!204.16!MXD4;;chr14:74226961..74227020,-!p1@C14orf43!0.75!34.03!C14orf43;;chr3:168864315..168864339,-!p2@MECOM!0.75!8.10!MECOM;;chr1:935496..935509,-!p3@HES4!0.75!7.29!HES4;;chr19:1652555..1652568,-!p2@TCF3!0.74!20.25!TCF3;;chr1:23885981..23886002,-!p1@ID3!0.72!841.74!ID3;;chr12:66218598..66218645,+!p2@HMGA2!0.72!21.87!HMGA2;;chr6:126240380..126240430,+!p2@NCOA7!0.72!12.15!NCOA7;;chr12:80084137..80084165,-!p10@PAWR!0.72!5.67!PAWR;;chr12:66218836..66218888,+!p1@HMGA2!0.71!43.75!HMGA2;;chr3:178789522..178789564,-!p2@ZMAT3!0.71!34.03!ZMAT3;;chr13:72441315..72441454,-!p1@DACH1!0.71!8.91!DACH1;;chr3:170076314..170076334,+!p2@SKIL!0.71!5.67!SKIL;;chr3:25469815..25469866,+!p3@RARB!0.70!4.05!RARB;;chr3:25470062..25470084,+!p4@RARB!0.70!4.05!RARB;;chr3:25470156..25470227,+!p2@RARB!0.70!4.05!RARB;;chr6:126070748..126070768,+!p2@HEY2!0.70!4.05!HEY2;;chr7:27192185..27192209,-!p1@HOXA3!0.70!4.05!HOXA3;;chr17:46622175..46622186,-!p12@HOXB2!0.70!4.05!HOXB2;;chr17:46687935..46687950,-!p3@HOXB7!0.70!4.05!HOXB7;;chr17:46688310..46688323,-!p4@HOXB7!0.70!4.05!HOXB7;;chr12:66218003..66218018,+!p9@HMGA2!0.69!4.86!HMGA2;;chr17:7590797..7590815,-!p1@TP53!0.68!191.19!TP53;;chr12:80084167..80084197,-!p5@PAWR!0.68!9.72!PAWR;;chr11:65430554..65430579,-!p3@RELA!0.67!10.53!RELA;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.63!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!0.66!4.05!HOXB2;;chr1:120190786..120190915,-!p1@ZNF697!0.65!29.17!ZNF697;;chr12:66218183..66218209,+!p4@HMGA2!0.65!7.29!HMGA2;;chr13:41240717..41240735,-!p2@FOXO1!0.64!26.73!FOXO1;;chr20:2673383..2673441,+!p1@EBF4!0.64!5.67!EBF4;;chr11:62368696..62368759,-!p4@MTA2!0.63!23.49!MTA2;;chr9:116638565..116638606,+!p1@ZNF618!0.63!16.20!ZNF618;;chr5:92918894..92918912,+!p2@NR2F1!0.63!12.15!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.63!3.24!NR2F1;;chr7:139741594..139741615,-!p5@PARP12!0.63!3.24!PARP12;;chr7:1577899..1577943,+!p3@MAFK!0.63!3.24!MAFK;;chr16:86600458..86600461,+!p3@FOXC2!0.63!3.24!FOXC2;;chr17:46659728..46659749,-!p3@HOXB3!0.63!3.24!HOXB3;;chr17:6926381..6926392,+!p2@BCL6B!0.63!3.24!BCL6B;;chr18:22932004..22932021,-!p2@ZNF521!0.63!3.24!ZNF521;;chr18:53068982..53068993,-!p20@TCF4!0.63!3.24!TCF4;;chr18:53256971..53256984,-!p26@TCF4!0.63!3.24!TCF4;;chr19:13213496..13213501,-!p10@LYL1!0.63!3.24!LYL1;;chr9:14083091..14083096,-!p12@NFIB!0.63!3.24!NFIB;;chrY:21906594..21906622,-!p1@KDM5D!0.63!3.24!KDM5D;;chr22:19747040..19747054,+!p3@TBX1!0.63!3.24!TBX1;;chr2:176987441..176987454,+!p1@HOXD9!0.63!3.24!HOXD9;;chr2:237077022..237077038,-!p1@GBX2!0.63!3.24!GBX2;;chr12:124873824..124873833,-!p19@NCOR2!0.63!3.24!NCOR2;;chr19:46801639..46801699,+!p1@HIF3A!0.63!3.24!HIF3A;;chr20:42602000..42602034,+!p5@TOX2!0.63!3.24!TOX2;;chr3:141087393..141087426,+!p3@ZBTB38!0.62!14.58!ZBTB38;;chr19:56152332..56152347,+!p4@ZNF580!0.62!8.10!ZNF580;;chr2:231280954..231280965,+!p2@SP100!0.62!6.48!SP100;;chr6:10415276..10415341,-!p2@TFAP2A!0.62!4.05!TFAP2A;;chr19:42759266..42759290,-!p1@ERF!0.61!119.09!ERF;;chr15:96873984..96873999,+!p3@NR2F2!0.61!26.73!NR2F2;;chr9:35732647..35732678,+!p2@CREB3!0.61!20.25!CREB3;;chr6:21597514..21597578,+!p4@SOX4!0.61!5.67!SOX4;;chr19:45908292..45908374,-!p1@PPP1R13L!0.60!31.60!PPP1R13L;;chr3:52001426..52001447,-!p3@PCBP4!0.60!9.72!PCBP4;;chr8:106330656..106330684,+!p1@ZFPM2!0.60!8.91!ZFPM2;;chr18:53257001..53257015,-!p5@TCF4!0.60!5.67!TCF4;;chr17:41623692..41623715,-!p1@ETV4!0.59!14.58!ETV4;;chr8:128749984..128750033,+!p4@MYC!0.59!12.15!MYC;;chr17:46622070..46622109,-!p1@HOXB2!0.59!7.29!HOXB2;;chr12:53574398..53574412,+!p3@ZNF740!0.59!5.67!ZNF740;;chr8:145159277..145159282,+!p7@MAF1!0.59!4.86!MAF1;;chr17:46622114..46622138,-!p4@HOXB2!0.59!4.86!HOXB2;;chr3:52001448..52001478,-!p2@PCBP4!0.58!47.80!PCBP4;;chr4:2263861..2263883,-!p2@MXD4!0.58!20.25!MXD4;;chr1:156470515..156470542,-!p2@MEF2D!0.58!17.82!MEF2D;;chr1:151032833..151032850,+!p3@MLLT11!0.58!7.29!MLLT11;;chr19:19303047..19303079,+!p3@RFXANK!0.58!7.29!RFXANK;;chr1:221052776..221052799,+!p1@HLX!0.58!5.67!HLX;;chr19:56671612..56671626,+!p4@ZNF444!0.58!4.86!ZNF444;;chr2:85360499..85360598,+!p1@TCF7L1!0.57!18.63!TCF7L1;;chr9:14314131..14314147,-!p2@NFIB!0.57!18.63!NFIB;;chr7:148892557..148892580,+!p4@ZNF282!0.57!8.91!ZNF282;;chr2:74375081..74375092,-!p2@BOLA3!0.57!6.48!BOLA3;;chr11:65430535..65430549,-!p4@RELA!0.57!3.24!RELA;;chr15:83953397..83953425,-!p1@BNC1!0.57!3.24!BNC1;;chr17:46622205..46622218,-!p3@HOXB2!0.57!3.24!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!0.57!3.24!HOXB6;;chr19:19303794..19303805,+!p5@RFXANK!0.57!3.24!RFXANK;;chr11:128563948..128564003,+!p1@FLI1!0.56!39.70!FLI1;;chr15:66994561..66994597,+!p2@SMAD6!0.56!7.29!SMAD6;;chr1:151032922..151032951,+!p2@MLLT11!0.56!4.86!MLLT11;;chr9:14082760..14082775,-!p6@NFIB!0.56!4.86!NFIB;;chr4:146436110..146436135,+!p6@SMAD1!0.56!4.05!SMAD1;;chr8:145159846..145159889,+!p6@MAF1!0.56!4.05!MAF1;;chr8:80679993..80680011,-!p1@HEY1!0.55!4.05!HEY1;;chr6:85473156..85473210,-!p2@TBX18!0.55!3.24!TBX18;;chr17:41622834..41622883,-!p6@ETV4!0.55!3.24!ETV4;;chr19:19303731..19303783,+!p1@RFXANK!0.54!74.53!RFXANK;;chr7:149470641..149470694,-!p1@ZNF467!0.54!13.77!ZNF467;;chr19:56111680..56111716,+!p1@ZNF524!0.54!11.34!ZNF524;;chr1:151032782..151032801,+!p4@MLLT11!0.54!5.67!MLLT11;;chr15:90544532..90544563,+!p1@ZNF710!0.54!5.67!ZNF710;;chr1:151032739..151032748,+!p6@MLLT11!0.54!3.24!MLLT11;;chr6:43140095..43140145,+!p5@SRF!0.54!3.24!SRF;;chr7:27183263..27183284,-!p2@HOXA5!0.54!2.43!HOXA5;;chr7:35293685..35293718,-!p1@TBX20!0.54!2.43!TBX20;;chr8:30890810..30890880,-!p1@PURG!0.54!2.43!PURG;;chr8:55370884..55370896,+!p5@SOX17!0.54!2.43!SOX17;;chr15:66994523..66994541,+!p5@SMAD6!0.54!2.43!SMAD6;;chr18:53068893..53068902,-!p28@TCF4!0.54!2.43!TCF4;;chr19:13136057..13136085,+!p11@NFIX!0.54!2.43!NFIX;;chr12:66218420..66218439,+!p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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002544;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002545;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor2.CNhs11978.11343-117G2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11343-117G2 | |id=FF:11343-117G2 | ||
|is_a=EFO:0002091;;FF:0000051 | |is_a=EFO:0002091;;FF:0000051 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11978 | |||
|library_id_phase_based=2:CNhs11978 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11343 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.AGTCAA.11343 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11343 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.AGTCAA.11343 | |||
|name=Endothelial Cells - Thoracic, donor2 | |name=Endothelial Cells - Thoracic, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11978,LSID836,release011,COMPLETED | |profile_hcage=CNhs11978,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA308-R10a | |rna_catalog_number=CA308-R10a | ||
| Line 58: | Line 82: | ||
|rna_tube_id=117G2 | |rna_tube_id=117G2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10006.AGTCAA | |||
|sample_age=50 | |sample_age=50 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 106: | ||
|top_motifs=SPZ1:1.83185403667;RXR{A,B,G}:1.81564153297;IKZF1:1.64688144271;SOX{8,9,10}:1.58441371893;TFAP4:1.51535448602;FOXL1:1.42237627014;ARID5B:1.40518186448;TLX1..3_NFIC{dimer}:1.37144835975;UFEwm:1.19858388989;ZNF423:1.19253675071;HES1:1.18376479012;AR:1.14322733383;NFATC1..3:1.12936899532;RXRA_VDR{dimer}:1.11126465097;GLI1..3:1.08685095636;ZBTB6:1.02120595097;PPARG:0.96682935519;TFAP2{A,C}:0.948453836777;NKX2-2,8:0.944437218111;EBF1:0.942376509463;ESRRA:0.917951423668;ZNF148:0.873651021635;TP53:0.767982184686;NR3C1:0.755637363817;GTF2A1,2:0.753638068083;SMAD1..7,9:0.734649189112;ONECUT1,2:0.680706722336;GATA6:0.671453803653;LEF1_TCF7_TCF7L1,2:0.6522577315;XCPE1{core}:0.651241885481;HAND1,2:0.584552784558;PAX1,9:0.572454030468;PAX5:0.545457164543;NFE2L1:0.541533236052;ALX4:0.511016571637;ZIC1..3:0.503482417582;SOX17:0.484492961599;ETS1,2:0.482515729609;IKZF2:0.455185645578;GZF1:0.430081775376;HMX1:0.403177222554;EVI1:0.367895299796;SOX2:0.362622293589;REST:0.360327637749;SOX5:0.351970566511;EN1,2:0.347838845609;bHLH_family:0.341739324472;TFCP2:0.338408685865;HOX{A5,B5}:0.294830491472;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.287127090999;SPIB:0.274726722029;GCM1,2:0.260334635088;HIC1:0.256851007609;HMGA1,2:0.255861166318;HBP1_HMGB_SSRP1_UBTF:0.210333064353;XBP1:0.176479288581;POU6F1:0.173425560153;SRF:0.166226830175;NANOG:0.159858261461;LHX3,4:0.139072372706;TEAD1:0.136920489963;TBP:0.12438502352;BACH2:0.10938513139;SP1:0.0922371281724;PITX1..3:0.0845702424581;ELF1,2,4:0.0818982281709;FOX{I1,J2}:0.0781678504274;MTE{core}:0.0723329725538;RORA:0.0619478217454;LMO2:0.0530848674783;FOS_FOS{B,L1}_JUN{B,D}:0.0494776304226;YY1:0.0441244734558;ZFP161:0.0337960567346;ZNF238:0.0327862218404;NFE2:0.0158029473725;TBX4,5:-0.00211286350427;NANOG{mouse}:-0.00927898692;STAT2,4,6:-0.0308536020657;TFAP2B:-0.0346147408456;GTF2I:-0.0377170873742;PAX8:-0.0393564452885;NR5A1,2:-0.0517685845306;KLF4:-0.052620907981;GFI1B:-0.0527560975711;NFE2L2:-0.0659147445781;PATZ1:-0.0795398197457;SPI1:-0.0850638264698;HNF4A_NR2F1,2:-0.0880797842359;NKX3-2:-0.0941082511374;MYOD1:-0.110697563062;FOXQ1:-0.111240597478;MED-1{core}:-0.114483809624;EGR1..3:-0.127128391578;NFKB1_REL_RELA:-0.140878211904;POU3F1..4:-0.147176671288;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.151506209389;FOSL2:-0.151993948706;MYB:-0.155841725314;NHLH1,2:-0.170651017525;FOXM1:-0.194183866132;MAZ:-0.212662780072;POU2F1..3:-0.218547700348;RREB1:-0.237213000223;HNF1A:-0.24746011026;NKX2-1,4:-0.255875679189;PAX6:-0.272397612517;ATF2:-0.278711174299;TEF:-0.302752890301;ATF6:-0.303630945144;ZNF143:-0.306840083104;RBPJ:-0.308539821436;SNAI1..3:-0.345686162398;PAX4:-0.347853310273;ESR1:-0.367059162685;ADNP_IRX_SIX_ZHX:-0.37616235751;RFX1:-0.379688543145;FOXD3:-0.388141035;MTF1:-0.404564101421;TAL1_TCF{3,4,12}:-0.415134069812;PRDM1:-0.420335031584;BPTF:-0.436454581808;FOXA2:-0.440044694731;PAX3,7:-0.448182987615;PRRX1,2:-0.448775246107;NR6A1:-0.474012129753;MEF2{A,B,C,D}:-0.50848241468;RUNX1..3:-0.513425895778;DMAP1_NCOR{1,2}_SMARC:-0.515863365081;TLX2:-0.518434081051;DBP:-0.5206771189;JUN:-0.530543818388;HLF:-0.534485301029;E2F1..5:-0.53933488676;CDC5L:-0.556984401536;GATA4:-0.566372182566;VSX1,2:-0.576717159116;TFDP1:-0.583900232795;MZF1:-0.585229036711;IRF1,2:-0.589735431412;FOX{D1,D2}:-0.591293785575;CRX:-0.60371073197;ZEB1:-0.639233146211;IRF7:-0.641696840571;PBX1:-0.664597044101;CUX2:-0.667958220304;ZBTB16:-0.675946368937;FOXO1,3,4:-0.67710827377;ALX1:-0.681633950931;OCT4_SOX2{dimer}:-0.709117931944;MYFfamily:-0.709202810652;NKX2-3_NKX2-5:-0.723682475153;HOX{A6,A7,B6,B7}:-0.725095641876;FOXP1:-0.732548964479;HSF1,2:-0.745265272865;NRF1:-0.760062696221;FOXP3:-0.763264517579;STAT1,3:-0.778205459817;PAX2:-0.778464208801;MAFB:-0.792064327333;FOX{F1,F2,J1}:-0.812443910151;CDX1,2,4:-0.822302204392;CEBPA,B_DDIT3:-0.857658488058;TOPORS:-0.867469895785;EP300:-0.870949391896;NFY{A,B,C}:-0.876213668887;CREB1:-0.906905002467;GFI1:-0.922135069303;SREBF1,2:-0.930311406905;ELK1,4_GABP{A,B1}:-0.939318473997;STAT5{A,B}:-0.943733007525;MYBL2:-0.949262653913;PDX1:-0.997478361988;HOXA9_MEIS1:-1.02114097386;AIRE:-1.05480661865;NFIL3:-1.07932667128;HOX{A4,D4}:-1.08973300293;HIF1A:-1.09893347925;NR1H4:-1.12961111772;TGIF1:-1.17888276971;BREu{core}:-1.23305128685;ATF5_CREB3:-1.28955804711;RFX2..5_RFXANK_RFXAP:-1.29596239425;ZNF384:-1.32754560651;POU1F1:-1.35860038765;T:-1.39694010938;ATF4:-1.40038146474;NKX3-1:-1.43426894776;NFIX:-1.49175784789;AHR_ARNT_ARNT2:-1.49337781449;POU5F1:-1.52303958437;NKX6-1,2:-1.5487391031;FOXN1:-1.78192902958 | |top_motifs=SPZ1:1.83185403667;RXR{A,B,G}:1.81564153297;IKZF1:1.64688144271;SOX{8,9,10}:1.58441371893;TFAP4:1.51535448602;FOXL1:1.42237627014;ARID5B:1.40518186448;TLX1..3_NFIC{dimer}:1.37144835975;UFEwm:1.19858388989;ZNF423:1.19253675071;HES1:1.18376479012;AR:1.14322733383;NFATC1..3:1.12936899532;RXRA_VDR{dimer}:1.11126465097;GLI1..3:1.08685095636;ZBTB6:1.02120595097;PPARG:0.96682935519;TFAP2{A,C}:0.948453836777;NKX2-2,8:0.944437218111;EBF1:0.942376509463;ESRRA:0.917951423668;ZNF148:0.873651021635;TP53:0.767982184686;NR3C1:0.755637363817;GTF2A1,2:0.753638068083;SMAD1..7,9:0.734649189112;ONECUT1,2:0.680706722336;GATA6:0.671453803653;LEF1_TCF7_TCF7L1,2:0.6522577315;XCPE1{core}:0.651241885481;HAND1,2:0.584552784558;PAX1,9:0.572454030468;PAX5:0.545457164543;NFE2L1:0.541533236052;ALX4:0.511016571637;ZIC1..3:0.503482417582;SOX17:0.484492961599;ETS1,2:0.482515729609;IKZF2:0.455185645578;GZF1:0.430081775376;HMX1:0.403177222554;EVI1:0.367895299796;SOX2:0.362622293589;REST:0.360327637749;SOX5:0.351970566511;EN1,2:0.347838845609;bHLH_family:0.341739324472;TFCP2:0.338408685865;HOX{A5,B5}:0.294830491472;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.287127090999;SPIB:0.274726722029;GCM1,2:0.260334635088;HIC1:0.256851007609;HMGA1,2:0.255861166318;HBP1_HMGB_SSRP1_UBTF:0.210333064353;XBP1:0.176479288581;POU6F1:0.173425560153;SRF:0.166226830175;NANOG:0.159858261461;LHX3,4:0.139072372706;TEAD1:0.136920489963;TBP:0.12438502352;BACH2:0.10938513139;SP1:0.0922371281724;PITX1..3:0.0845702424581;ELF1,2,4:0.0818982281709;FOX{I1,J2}:0.0781678504274;MTE{core}:0.0723329725538;RORA:0.0619478217454;LMO2:0.0530848674783;FOS_FOS{B,L1}_JUN{B,D}:0.0494776304226;YY1:0.0441244734558;ZFP161:0.0337960567346;ZNF238:0.0327862218404;NFE2:0.0158029473725;TBX4,5:-0.00211286350427;NANOG{mouse}:-0.00927898692;STAT2,4,6:-0.0308536020657;TFAP2B:-0.0346147408456;GTF2I:-0.0377170873742;PAX8:-0.0393564452885;NR5A1,2:-0.0517685845306;KLF4:-0.052620907981;GFI1B:-0.0527560975711;NFE2L2:-0.0659147445781;PATZ1:-0.0795398197457;SPI1:-0.0850638264698;HNF4A_NR2F1,2:-0.0880797842359;NKX3-2:-0.0941082511374;MYOD1:-0.110697563062;FOXQ1:-0.111240597478;MED-1{core}:-0.114483809624;EGR1..3:-0.127128391578;NFKB1_REL_RELA:-0.140878211904;POU3F1..4:-0.147176671288;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.151506209389;FOSL2:-0.151993948706;MYB:-0.155841725314;NHLH1,2:-0.170651017525;FOXM1:-0.194183866132;MAZ:-0.212662780072;POU2F1..3:-0.218547700348;RREB1:-0.237213000223;HNF1A:-0.24746011026;NKX2-1,4:-0.255875679189;PAX6:-0.272397612517;ATF2:-0.278711174299;TEF:-0.302752890301;ATF6:-0.303630945144;ZNF143:-0.306840083104;RBPJ:-0.308539821436;SNAI1..3:-0.345686162398;PAX4:-0.347853310273;ESR1:-0.367059162685;ADNP_IRX_SIX_ZHX:-0.37616235751;RFX1:-0.379688543145;FOXD3:-0.388141035;MTF1:-0.404564101421;TAL1_TCF{3,4,12}:-0.415134069812;PRDM1:-0.420335031584;BPTF:-0.436454581808;FOXA2:-0.440044694731;PAX3,7:-0.448182987615;PRRX1,2:-0.448775246107;NR6A1:-0.474012129753;MEF2{A,B,C,D}:-0.50848241468;RUNX1..3:-0.513425895778;DMAP1_NCOR{1,2}_SMARC:-0.515863365081;TLX2:-0.518434081051;DBP:-0.5206771189;JUN:-0.530543818388;HLF:-0.534485301029;E2F1..5:-0.53933488676;CDC5L:-0.556984401536;GATA4:-0.566372182566;VSX1,2:-0.576717159116;TFDP1:-0.583900232795;MZF1:-0.585229036711;IRF1,2:-0.589735431412;FOX{D1,D2}:-0.591293785575;CRX:-0.60371073197;ZEB1:-0.639233146211;IRF7:-0.641696840571;PBX1:-0.664597044101;CUX2:-0.667958220304;ZBTB16:-0.675946368937;FOXO1,3,4:-0.67710827377;ALX1:-0.681633950931;OCT4_SOX2{dimer}:-0.709117931944;MYFfamily:-0.709202810652;NKX2-3_NKX2-5:-0.723682475153;HOX{A6,A7,B6,B7}:-0.725095641876;FOXP1:-0.732548964479;HSF1,2:-0.745265272865;NRF1:-0.760062696221;FOXP3:-0.763264517579;STAT1,3:-0.778205459817;PAX2:-0.778464208801;MAFB:-0.792064327333;FOX{F1,F2,J1}:-0.812443910151;CDX1,2,4:-0.822302204392;CEBPA,B_DDIT3:-0.857658488058;TOPORS:-0.867469895785;EP300:-0.870949391896;NFY{A,B,C}:-0.876213668887;CREB1:-0.906905002467;GFI1:-0.922135069303;SREBF1,2:-0.930311406905;ELK1,4_GABP{A,B1}:-0.939318473997;STAT5{A,B}:-0.943733007525;MYBL2:-0.949262653913;PDX1:-0.997478361988;HOXA9_MEIS1:-1.02114097386;AIRE:-1.05480661865;NFIL3:-1.07932667128;HOX{A4,D4}:-1.08973300293;HIF1A:-1.09893347925;NR1H4:-1.12961111772;TGIF1:-1.17888276971;BREu{core}:-1.23305128685;ATF5_CREB3:-1.28955804711;RFX2..5_RFXANK_RFXAP:-1.29596239425;ZNF384:-1.32754560651;POU1F1:-1.35860038765;T:-1.39694010938;ATF4:-1.40038146474;NKX3-1:-1.43426894776;NFIX:-1.49175784789;AHR_ARNT_ARNT2:-1.49337781449;POU5F1:-1.52303958437;NKX6-1,2:-1.5487391031;FOXN1:-1.78192902958 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11343-117G2;search_select_hide=table117:FF:11343-117G2 | |||
}} | }} | ||
Latest revision as of 17:53, 4 June 2020
| Name: | Endothelial Cells - Thoracic, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11978 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11978
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11978
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.356 |
| 10 | 10 | 0.95 |
| 100 | 100 | 0.817 |
| 101 | 101 | 0.342 |
| 102 | 102 | 0.502 |
| 103 | 103 | 0.132 |
| 104 | 104 | 0.945 |
| 105 | 105 | 0.305 |
| 106 | 106 | 0.00961 |
| 107 | 107 | 0.0298 |
| 108 | 108 | 0.143 |
| 109 | 109 | 0.167 |
| 11 | 11 | 0.0522 |
| 110 | 110 | 0.0556 |
| 111 | 111 | 0.0654 |
| 112 | 112 | 0.161 |
| 113 | 113 | 0.888 |
| 114 | 114 | 0.117 |
| 115 | 115 | 0.232 |
| 116 | 116 | 0.14 |
| 117 | 117 | 0.567 |
| 118 | 118 | 0.214 |
| 119 | 119 | 0.273 |
| 12 | 12 | 0.849 |
| 120 | 120 | 0.00324 |
| 121 | 121 | 0.882 |
| 122 | 122 | 0.264 |
| 123 | 123 | 0.602 |
| 124 | 124 | 0.542 |
| 125 | 125 | 0.291 |
| 126 | 126 | 0.875 |
| 127 | 127 | 0.263 |
| 128 | 128 | 0.233 |
| 129 | 129 | 0.0789 |
| 13 | 13 | 0.421 |
| 130 | 130 | 0.617 |
| 131 | 131 | 0.914 |
| 132 | 132 | 0.379 |
| 133 | 133 | 0.59 |
| 134 | 134 | 0.511 |
| 135 | 135 | 0.135 |
| 136 | 136 | 0.749 |
| 137 | 137 | 0.192 |
| 138 | 138 | 0.671 |
| 139 | 139 | 0.0713 |
| 14 | 14 | 0.827 |
| 140 | 140 | 0.967 |
| 141 | 141 | 0.39 |
| 142 | 142 | 0.837 |
| 143 | 143 | 0.012 |
| 144 | 144 | 0.822 |
| 145 | 145 | 0.0814 |
| 146 | 146 | 0.289 |
| 147 | 147 | 0.0656 |
| 148 | 148 | 0.593 |
| 149 | 149 | 0.0211 |
| 15 | 15 | 0.5 |
| 150 | 150 | 0.254 |
| 151 | 151 | 0.303 |
| 152 | 152 | 0.0325 |
| 153 | 153 | 0.0517 |
| 154 | 154 | 0.676 |
| 155 | 155 | 0.8 |
| 156 | 156 | 0.158 |
| 157 | 157 | 0.956 |
| 158 | 158 | 0.324 |
| 159 | 159 | 0.965 |
| 16 | 16 | 0.312 |
| 160 | 160 | 0.00518 |
| 161 | 161 | 0.634 |
| 162 | 162 | 0.723 |
| 163 | 163 | 0.714 |
| 164 | 164 | 0.159 |
| 165 | 165 | 0.873 |
| 166 | 166 | 0.563 |
| 167 | 167 | 0.648 |
| 168 | 168 | 0.429 |
| 169 | 169 | 0.0245 |
| 17 | 17 | 0.103 |
| 18 | 18 | 0.166 |
| 19 | 19 | 0.0606 |
| 2 | 2 | 0.255 |
| 20 | 20 | 0.977 |
| 21 | 21 | 0.751 |
| 22 | 22 | 0.243 |
| 23 | 23 | 0.109 |
| 24 | 24 | 0.738 |
| 25 | 25 | 0.858 |
| 26 | 26 | 0.376 |
| 27 | 27 | 0.201 |
| 28 | 28 | 0.266 |
| 29 | 29 | 0.476 |
| 3 | 3 | 0.517 |
| 30 | 30 | 0.896 |
| 31 | 31 | 0.681 |
| 32 | 32 | 0.0404 |
| 33 | 33 | 0.556 |
| 34 | 34 | 0.254 |
| 35 | 35 | 0.624 |
| 36 | 36 | 0.309 |
| 37 | 37 | 0.0887 |
| 38 | 38 | 0.311 |
| 39 | 39 | 0.213 |
| 4 | 4 | 0.734 |
| 40 | 40 | 0.0702 |
| 41 | 41 | 0.0895 |
| 42 | 42 | 0.884 |
| 43 | 43 | 0.314 |
| 44 | 44 | 0.145 |
| 45 | 45 | 0.3 |
| 46 | 46 | 0.0725 |
| 47 | 47 | 0.188 |
| 48 | 48 | 0.0856 |
| 49 | 49 | 0.433 |
| 5 | 5 | 0.791 |
| 50 | 50 | 0.65 |
| 51 | 51 | 0.311 |
| 52 | 52 | 0.597 |
| 53 | 53 | 0.687 |
| 54 | 54 | 0.49 |
| 55 | 55 | 0.759 |
| 56 | 56 | 0.622 |
| 57 | 57 | 0.233 |
| 58 | 58 | 0.914 |
| 59 | 59 | 0.0079 |
| 6 | 6 | 0.878 |
| 60 | 60 | 0.26 |
| 61 | 61 | 0.8 |
| 62 | 62 | 0.436 |
| 63 | 63 | 0.226 |
| 64 | 64 | 0.362 |
| 65 | 65 | 0.0755 |
| 66 | 66 | 0.983 |
| 67 | 67 | 0.349 |
| 68 | 68 | 0.218 |
| 69 | 69 | 0.133 |
| 7 | 7 | 0.693 |
| 70 | 70 | 0.106 |
| 71 | 71 | 0.368 |
| 72 | 72 | 0.697 |
| 73 | 73 | 0.0163 |
| 74 | 74 | 0.97 |
| 75 | 75 | 0.335 |
| 76 | 76 | 0.896 |
| 77 | 77 | 0.0189 |
| 78 | 78 | 0.544 |
| 79 | 79 | 1.87768e-4 |
| 8 | 8 | 0.029 |
| 80 | 80 | 0.595 |
| 81 | 81 | 0.73 |
| 82 | 82 | 0.185 |
| 83 | 83 | 0.469 |
| 84 | 84 | 0.135 |
| 85 | 85 | 0.085 |
| 86 | 86 | 0.851 |
| 87 | 87 | 0.242 |
| 88 | 88 | 0.891 |
| 89 | 89 | 0.0168 |
| 9 | 9 | 0.262 |
| 90 | 90 | 0.963 |
| 91 | 91 | 0.245 |
| 92 | 92 | 0.198 |
| 93 | 93 | 0.593 |
| 94 | 94 | 0.844 |
| 95 | 95 | 0.145 |
| 96 | 96 | 0.584 |
| 97 | 97 | 0.477 |
| 98 | 98 | 0.625 |
| 99 | 99 | 0.0171 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11978
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)
0002545 (thoracic aorta endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0005800 (segment of aorta)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001515 (thoracic aorta)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)
0000051 (human thoracic endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
