FF:11342-117G1: Difference between revisions

Latest revision as of 17:53, 4 June 2020

Name:	Endothelial Cells - Microvascular, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11376
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	capillary
dev stage	47 years old adult
sex	female
age	47
cell type	blood vessel endothelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1941
catalog number	CA100-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005962

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11376		CAGE		DRX008227		DRR009099

Accession ID Hg19

Library id		BAM		CTSS
CNhs11376		DRZ000524		DRZ001909

Accession ID Hg38

Library id		BAM		CTSS
CNhs11376		DRZ011874		DRZ013259

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0876
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.113
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.516
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.261
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.311
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.466
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.395
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.43
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0565
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.516
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11376

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.794
MA0003.1	MA0003.1	0.325
MA0004.1	MA0004.1	0.578
MA0006.1	MA0006.1	0.108
MA0007.1	MA0007.1	0.0992
MA0009.1	MA0009.1	0.607
MA0014.1	MA0014.1	0.293
MA0017.1	MA0017.1	0.11
MA0018.2	MA0018.2	0.00942
MA0019.1	MA0019.1	0.194
MA0024.1	MA0024.1	0.0166
MA0025.1	MA0025.1	0.376
MA0027.1	MA0027.1	0.968
MA0028.1	MA0028.1	0.634
MA0029.1	MA0029.1	0.929
MA0030.1	MA0030.1	0.791
MA0031.1	MA0031.1	0.571
MA0035.2	MA0035.2	0.00646
MA0038.1	MA0038.1	0.194
MA0039.2	MA0039.2	0.183
MA0040.1	MA0040.1	0.116
MA0041.1	MA0041.1	0.199
MA0042.1	MA0042.1	0.558
MA0043.1	MA0043.1	4.74083e-6
MA0046.1	MA0046.1	0.352
MA0047.2	MA0047.2	0.207
MA0048.1	MA0048.1	0.487
MA0050.1	MA0050.1	0.0253
MA0051.1	MA0051.1	0.912
MA0052.1	MA0052.1	0.867
MA0055.1	MA0055.1	0.0626
MA0057.1	MA0057.1	0.736
MA0058.1	MA0058.1	0.441
MA0059.1	MA0059.1	0.164
MA0060.1	MA0060.1	0.464
MA0061.1	MA0061.1	0.237
MA0062.2	MA0062.2	0.755
MA0065.2	MA0065.2	0.0297
MA0066.1	MA0066.1	0.342
MA0067.1	MA0067.1	0.141
MA0068.1	MA0068.1	0.844
MA0069.1	MA0069.1	0.464
MA0070.1	MA0070.1	0.184
MA0071.1	MA0071.1	0.292
MA0072.1	MA0072.1	0.194
MA0073.1	MA0073.1	0.323
MA0074.1	MA0074.1	0.857
MA0076.1	MA0076.1	0.106
MA0077.1	MA0077.1	7.82093e-5
MA0078.1	MA0078.1	0.00333
MA0079.2	MA0079.2	0.792
MA0080.2	MA0080.2	0.00333
MA0081.1	MA0081.1	0.11
MA0083.1	MA0083.1	0.249
MA0084.1	MA0084.1	0.257
MA0087.1	MA0087.1	0.0572
MA0088.1	MA0088.1	0.18
MA0090.1	MA0090.1	0.653
MA0091.1	MA0091.1	0.971
MA0092.1	MA0092.1	0.145
MA0093.1	MA0093.1	0.661
MA0099.2	MA0099.2	1.81634e-8
MA0100.1	MA0100.1	0.135
MA0101.1	MA0101.1	0.0212
MA0102.2	MA0102.2	3.16344e-4
MA0103.1	MA0103.1	0.591
MA0104.2	MA0104.2	0.96
MA0105.1	MA0105.1	0.0977
MA0106.1	MA0106.1	0.0123
MA0107.1	MA0107.1	0.0126
MA0108.2	MA0108.2	0.107
MA0111.1	MA0111.1	0.974
MA0112.2	MA0112.2	0.0323
MA0113.1	MA0113.1	0.807
MA0114.1	MA0114.1	0.172
MA0115.1	MA0115.1	0.999
MA0116.1	MA0116.1	0.184
MA0117.1	MA0117.1	0.103
MA0119.1	MA0119.1	0.008
MA0122.1	MA0122.1	0.0676
MA0124.1	MA0124.1	0.519
MA0125.1	MA0125.1	0.793
MA0131.1	MA0131.1	0.373
MA0135.1	MA0135.1	0.545
MA0136.1	MA0136.1	0.00381
MA0137.2	MA0137.2	0.305
MA0138.2	MA0138.2	0.134
MA0139.1	MA0139.1	0.251
MA0140.1	MA0140.1	0.00379
MA0141.1	MA0141.1	0.0907
MA0142.1	MA0142.1	0.875
MA0143.1	MA0143.1	0.985
MA0144.1	MA0144.1	0.381
MA0145.1	MA0145.1	0.0574
MA0146.1	MA0146.1	0.335
MA0147.1	MA0147.1	0.766
MA0148.1	MA0148.1	0.0513
MA0149.1	MA0149.1	0.0583
MA0150.1	MA0150.1	0.0181
MA0152.1	MA0152.1	0.843
MA0153.1	MA0153.1	0.483
MA0154.1	MA0154.1	0.12
MA0155.1	MA0155.1	0.115
MA0156.1	MA0156.1	0.0066
MA0157.1	MA0157.1	0.67
MA0159.1	MA0159.1	0.08
MA0160.1	MA0160.1	0.276
MA0162.1	MA0162.1	0.0877
MA0163.1	MA0163.1	0.139
MA0164.1	MA0164.1	0.606
MA0258.1	MA0258.1	0.165
MA0259.1	MA0259.1	0.876

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11376

Novel motif	Logo	P-value
1	1	0.0277
10	10	0.987
100	100	0.274
101	101	0.152
102	102	0.752
103	103	0.682
104	104	0.768
105	105	0.672
106	106	0.143
107	107	0.0647
108	108	0.528
109	109	0.0798
11	11	0.0423
110	110	0.0531
111	111	0.152
112	112	0.45
113	113	0.664
114	114	0.0959
115	115	0.363
116	116	0.529
117	117	0.436
118	118	0.491
119	119	0.111
12	12	0.781
120	120	0.0519
121	121	0.336
122	122	0.215
123	123	0.484
124	124	0.236
125	125	0.173
126	126	0.287
127	127	0.52
128	128	0.448
129	129	0.186
13	13	0.148
130	130	0.911
131	131	0.988
132	132	0.437
133	133	0.229
134	134	0.863
135	135	0.00758
136	136	0.294
137	137	0.521
138	138	0.674
139	139	0.257
14	14	0.673
140	140	0.548
141	141	0.354
142	142	0.685
143	143	0.133
144	144	0.691
145	145	0.115
146	146	0.0728
147	147	0.0894
148	148	0.852
149	149	0.0671
15	15	0.239
150	150	0.256
151	151	0.374
152	152	0.0318
153	153	0.684
154	154	0.15
155	155	0.871
156	156	0.181
157	157	0.288
158	158	0.578
159	159	0.234
16	16	0.272
160	160	0.0893
161	161	0.475
162	162	0.948
163	163	0.624
164	164	0.117
165	165	0.908
166	166	0.362
167	167	0.285
168	168	0.852
169	169	0.0209
17	17	0.2
18	18	0.145
19	19	0.168
2	2	0.809
20	20	0.878
21	21	0.8
22	22	0.128
23	23	0.315
24	24	0.367
25	25	0.833
26	26	0.328
27	27	0.119
28	28	0.251
29	29	0.373
3	3	0.343
30	30	0.774
31	31	0.648
32	32	0.885
33	33	0.0517
34	34	0.449
35	35	0.813
36	36	0.00265
37	37	0.0765
38	38	0.0952
39	39	0.836
4	4	0.877
40	40	0.00217
41	41	0.105
42	42	0.565
43	43	0.373
44	44	0.273
45	45	0.327
46	46	0.049
47	47	0.111
48	48	0.0552
49	49	0.433
5	5	0.259
50	50	0.721
51	51	0.245
52	52	0.673
53	53	0.885
54	54	0.569
55	55	0.594
56	56	0.621
57	57	0.111
58	58	0.788
59	59	0.0728
6	6	0.423
60	60	0.94
61	61	0.995
62	62	0.94
63	63	0.298
64	64	0.186
65	65	0.144
66	66	0.423
67	67	0.325
68	68	0.455
69	69	0.671
7	7	0.234
70	70	0.0467
71	71	0.201
72	72	0.923
73	73	0.00428
74	74	0.966
75	75	0.152
76	76	0.673
77	77	0.297
78	78	0.228
79	79	0.569
8	8	0.00739
80	80	0.705
81	81	0.981
82	82	0.322
83	83	0.841
84	84	0.115
85	85	0.206
86	86	0.926
87	87	0.0537
88	88	0.976
89	89	0.174
9	9	0.494
90	90	0.545
91	91	0.827
92	92	0.226
93	93	0.994
94	94	0.796
95	95	0.0822
96	96	0.254
97	97	0.382
98	98	0.0579
99	99	0.0152

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11376

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000050 human microvascular endothelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002144 (capillary endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0010523 (microcirculatory vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001915 (endothelium of capillary)
0004535 (cardiovascular system)
0001982 (capillary)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000050 (human microvascular endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0005291,UBERON:0000487,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0001915,UBERON:0004535,UBERON:0001982,UBERON:0004537,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
+|DRA_sample_Accession=CAGE@SAMD00005962
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:0000222,CL:0002144,CL:0002546
+|accession_numbers=CAGE;DRX008227;DRR009099;DRZ000524;DRZ001909;DRZ011874;DRZ013259
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0010523,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001915,UBERON:0004535,UBERON:0001982,UBERON:0004537,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002144
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000050
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.36!300.31!SOX18;;chr1:214161272..214161322,+!p1@PROX1!2.16!196.91!PROX1;;chr21:39870339..39870443,-!p1@ERG!2.08!120.12!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.84!67.66!SOX7;;chr22:19748231..19748317,+!p1@TBX1!1.76!56.26!TBX1;;chr8:55370487..55370503,+!p1@SOX17!1.74!53.98!SOX17;;chr18:53068911..53068935,-!p4@TCF4!1.71!57.02!TCF4;;chr1:6479968..6479986,-!p1@HES2!1.62!41.05!HES2;;chr17:6926362..6926377,+!p1@BCL6B!1.60!38.77!BCL6B;;chr8:80679993..80680011,-!p1@HEY1!1.59!53.98!HEY1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.49!29.65!ZBED1;;chr2:177053386..177053402,+!p1@HOXD1!1.46!28.13!HOXD1;;chr12:96588368..96588394,+!p3@ELK3!1.41!65.38!ELK3;;chr17:46682321..46682362,-!p1@HOXB6!1.39!23.57!HOXB6;;chr6:34204921..34204939,+!p3@HMGA1!1.37!644.71!HMGA1;;chr17:46692457..46692484,-!p2@HOXB8!1.36!22.05!HOXB8;;chr17:46688334..46688385,-!p1@HOXB7!1.24!23.57!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!1.23!15.97!HOXB8;;chr10:94449703..94449718,+!p1@HHEX!1.20!57.02!HHEX;;chr1:47695003..47695042,-!p2@TAL1!1.17!13.68!TAL1;;chr5:88119580..88119602,-!p17@MEF2C!1.17!13.68!MEF2C;;chr2:176981499..176981522,+!p2@HOXD10!1.14!12.92!HOXD10;;chr19:13213511..13213545,-!p2@LYL1!1.09!12.16!LYL1;;chr17:46692624..46692659,-!p3@HOXB8!1.09!11.40!HOXB8;;chrX:103499602..103499617,-!p1@ESX1!1.09!11.40!ESX1;;chr19:46801639..46801699,+!p1@HIF3A!1.09!11.40!HIF3A;;chr10:35484053..35484076,+!p1@CREM!1.07!27.37!CREM;;chr8:80680024..80680046,-!p2@HEY1!1.07!12.16!HEY1;;chr12:80084137..80084165,-!p10@PAWR!1.06!13.68!PAWR;;chr18:53177984..53178004,-!p17@TCF4!1.04!9.88!TCF4;;chr19:13213399..13213414,-!p6@LYL1!1.04!9.88!LYL1;;chr10:31288370..31288393,-!p3@ZNF438!1.01!9.12!ZNF438;;chr2:176994919..176994931,+!p2@HOXD8!0.97!8.36!HOXD8;;chr20:50721803..50721857,-!p2@ZFP64!0.96!12.92!ZFP64;;chr17:1959369..1959388,+!p2@HIC1!0.95!21.29!HIC1;;chr11:47279504..47279563,+!p1@NR1H3!0.95!18.25!NR1H3;;chr18:22932080..22932170,-!p1@ZNF521!0.93!32.69!ZNF521;;chr17:46692603..46692621,-!p6@HOXB8!0.93!7.60!HOXB8;;chr2:176987463..176987479,+!p2@HOXD9!0.93!7.60!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!0.93!7.60!HOXD8;;chr19:13213662..13213686,-!p1@LYL1!0.91!10.64!LYL1;;chr5:88178983..88179012,-!p1@MEF2C!0.89!55.50!MEF2C;;chr14:75988771..75988826,+!p1@BATF!0.89!9.12!BATF;;chr14:74256787..74256858,-!p6@C14orf43!0.89!6.84!C14orf43;;chr9:16705069..16705086,-!p3@BNC2!0.89!6.84!BNC2;;chr1:23885981..23886002,-!p1@ID3!0.87!1194.39!ID3;;chr5:92918919..92918942,+!p1@NR2F1!0.87!30.41!NR2F1;;chr7:27183291..27183324,-!p1@HOXA5!0.85!6.08!HOXA5;;chr7:27196267..27196311,-!p1@HOXA7!0.85!6.08!HOXA7;;chr1:214161328..214161348,+!p2@PROX1!0.85!6.08!PROX1;;chrX:103499660..103499666,-!p2@ESX1!0.85!6.08!ESX1;;chr17:46688310..46688323,-!p4@HOXB7!0.85!6.08!HOXB7;;chr17:46692287..46692317,-!p7@HOXB8!0.85!6.08!HOXB8;;chr17:46692318..46692362,-!p5@HOXB8!0.85!6.08!HOXB8;;chr7:149470641..149470694,-!p1@ZNF467!0.83!28.13!ZNF467;;chr4:146403912..146403972,+!p5@SMAD1!0.83!7.60!SMAD1;;chr1:23886132..23886156,-!p2@ID3!0.80!6.08!ID3;;chr1:214161358..214161377,+!p3@PROX1!0.80!5.32!PROX1;;chr2:176981526..176981543,+!p3@HOXD10!0.80!5.32!HOXD10;;chr3:21792682..21792720,-!p1@ZNF385D!0.80!5.32!ZNF385D;;chr3:21792790..21792824,-!p4@ZNF385D!0.80!5.32!ZNF385D;;chr18:53068940..53068951,-!p21@TCF4!0.80!5.32!TCF4;;chr10:35484804..35484902,+!p2@CREM!0.79!21.29!CREM;;chr9:14083467..14083483,-!p4@NFIB!0.79!13.68!NFIB;;chr15:83953397..83953425,-!p1@BNC1!0.79!6.08!BNC1;;chr11:128563948..128564003,+!p1@FLI1!0.78!66.14!FLI1;;chr11:65430554..65430579,-!p3@RELA!0.78!13.68!RELA;;chr17:1958388..1958404,+!p1@HIC1!0.77!34.21!HIC1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.76!41.81!L3MBTL3;;chr18:77155922..77155939,+!p1@NFATC1!0.75!13.68!NFATC1;;chr17:46691732..46691766,-!p4@HOXB8!0.75!4.56!HOXB8;;chr17:8027418..8027432,-!p1@HES7!0.75!4.56!HES7;;chr18:53068893..53068902,-!p28@TCF4!0.75!4.56!TCF4;;chr7:97840743..97840786,+!p1@BHLHA15!0.75!4.56!BHLHA15;;chr11:65429891..65429915,-!p7@RELA!0.75!4.56!RELA;;chr12:54394309..54394336,+!p2@HOXC9!0.75!4.56!HOXC9;;chr3:128206762..128206781,-!p2@GATA2!0.74!31.17!GATA2;;chr22:38597987..38598021,+!p2@MAFF!0.74!30.41!MAFF;;chr9:35732647..35732678,+!p2@CREB3!0.74!27.37!CREB3;;chr2:46524897..46524911,+!p2@EPAS1!0.74!13.68!EPAS1;;chr20:6748325..6748352,+!p1@BMP2!0.74!6.84!BMP2;;chr1:221052994..221053008,+!p6@HLX!0.73!5.32!HLX;;chr2:46524537..46524553,+!p1@EPAS1!0.72!478.21!EPAS1;;chr9:14314131..14314147,-!p2@NFIB!0.72!26.61!NFIB;;chr19:49865646..49865718,-!p1@TEAD2!0.71!39.53!TEAD2;;chr18:53257001..53257015,-!p5@TCF4!0.71!7.60!TCF4;;chr9:35732514..35732530,+!p5@CREB3!0.71!6.08!CREB3;;chr5:92918956..92918969,+!p4@NR2F1!0.71!4.56!NR2F1;;chr18:52989565..52989623,-!p9@TCF4!0.70!5.32!TCF4;;chr17:41622925..41622976,-!p3@ETV4!0.69!6.08!ETV4;;chr1:221052733..221052749,+!p2@HLX!0.69!5.32!HLX;;chr16:79634624..79634642,-!p1@MAF!0.68!16.73!MAF;;chr11:65430535..65430549,-!p4@RELA!0.68!4.56!RELA;;chr17:6926381..6926392,+!p2@BCL6B!0.68!3.80!BCL6B;;c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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002144;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
+|ffid_belonging_in_development=CL:0002546,CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor2.CNhs11376.11342-117G1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor2.CNhs11376.11342-117G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor2.CNhs11376.11342-117G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor2.CNhs11376.11342-117G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Microvascular%252c%2520donor2.CNhs11376.11342-117G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11342-117G1
 |is_a=EFO:0002091;;FF:0000050
 |is_obsolete=
+|library_id=CNhs11376
+|library_id_phase_based=2:CNhs11376
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11342
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11342
 |name=Endothelial Cells - Microvascular, donor2
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11376,LSID771,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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 |rna_box=117
 |rna_catalog_number=CA100-R10a
@@ Line 58: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=47
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11342-117G1;search_select_hide=table117:FF:11342-117G1
 }}

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FF:11342-117G1: Difference between revisions

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Latest revision as of 17:53, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0