FF:11272-116H3: Difference between revisions

Latest revision as of 16:29, 3 June 2020

Name:	Keratinocyte - epidermal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11064
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	54 years old adult
sex	male
age	54
cell type	keratinocyte
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1327
catalog number	CA102-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005531

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11064		CAGE		DRX008312		DRR009184

Accession ID Hg19

Library id		BAM		CTSS
CNhs11064		DRZ000609		DRZ001994

Accession ID Hg38

Library id		BAM		CTSS
CNhs11064		DRZ011959		DRZ013344

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005531

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10003.GCCAAT		sRNA-Seq		DRX037015		DRR041381

Accession ID Hg19

Library id		BAM		CTSS
SRhi10003.GCCAAT		DRZ007023

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0895
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.181
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.35
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0359
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.132
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0961
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0356
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.944
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.112
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.331
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.331
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0444
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0452
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0161
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.547
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.232
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.19
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.158
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.344
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11064

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.933
MA0003.1	MA0003.1	0.708
MA0004.1	MA0004.1	0.52
MA0006.1	MA0006.1	0.0427
MA0007.1	MA0007.1	0.744
MA0009.1	MA0009.1	0.0243
MA0014.1	MA0014.1	0.291
MA0017.1	MA0017.1	0.794
MA0018.2	MA0018.2	5.72441e-4
MA0019.1	MA0019.1	0.381
MA0024.1	MA0024.1	1.42887e-6
MA0025.1	MA0025.1	0.383
MA0027.1	MA0027.1	0.555
MA0028.1	MA0028.1	0.626
MA0029.1	MA0029.1	0.189
MA0030.1	MA0030.1	0.162
MA0031.1	MA0031.1	0.0317
MA0035.2	MA0035.2	0.431
MA0038.1	MA0038.1	0.102
MA0039.2	MA0039.2	0.00247
MA0040.1	MA0040.1	0.433
MA0041.1	MA0041.1	0.497
MA0042.1	MA0042.1	0.663
MA0043.1	MA0043.1	0.0208
MA0046.1	MA0046.1	0.753
MA0047.2	MA0047.2	0.842
MA0048.1	MA0048.1	0.776
MA0050.1	MA0050.1	1.99341e-8
MA0051.1	MA0051.1	1.25826e-5
MA0052.1	MA0052.1	0.0375
MA0055.1	MA0055.1	0.535
MA0057.1	MA0057.1	0.0127
MA0058.1	MA0058.1	0.269
MA0059.1	MA0059.1	0.562
MA0060.1	MA0060.1	0.0477
MA0061.1	MA0061.1	0.544
MA0062.2	MA0062.2	0.126
MA0065.2	MA0065.2	0.144
MA0066.1	MA0066.1	0.368
MA0067.1	MA0067.1	0.00186
MA0068.1	MA0068.1	0.0127
MA0069.1	MA0069.1	0.16
MA0070.1	MA0070.1	0.748
MA0071.1	MA0071.1	0.148
MA0072.1	MA0072.1	0.748
MA0073.1	MA0073.1	0.848
MA0074.1	MA0074.1	0.777
MA0076.1	MA0076.1	0.314
MA0077.1	MA0077.1	0.191
MA0078.1	MA0078.1	0.701
MA0079.2	MA0079.2	0.188
MA0080.2	MA0080.2	8.34245e-7
MA0081.1	MA0081.1	0.0222
MA0083.1	MA0083.1	0.0108
MA0084.1	MA0084.1	0.109
MA0087.1	MA0087.1	0.97
MA0088.1	MA0088.1	0.447
MA0090.1	MA0090.1	3.96739e-4
MA0091.1	MA0091.1	0.486
MA0092.1	MA0092.1	0.869
MA0093.1	MA0093.1	0.437
MA0099.2	MA0099.2	1.12484e-5
MA0100.1	MA0100.1	0.103
MA0101.1	MA0101.1	0.2
MA0102.2	MA0102.2	0.00321
MA0103.1	MA0103.1	2.59665e-6
MA0104.2	MA0104.2	0.703
MA0105.1	MA0105.1	0.95
MA0106.1	MA0106.1	7.90293e-11
MA0107.1	MA0107.1	0.18
MA0108.2	MA0108.2	0.483
MA0111.1	MA0111.1	0.854
MA0112.2	MA0112.2	0.154
MA0113.1	MA0113.1	0.845
MA0114.1	MA0114.1	0.592
MA0115.1	MA0115.1	0.764
MA0116.1	MA0116.1	0.158
MA0117.1	MA0117.1	0.386
MA0119.1	MA0119.1	0.37
MA0122.1	MA0122.1	0.562
MA0124.1	MA0124.1	0.964
MA0125.1	MA0125.1	0.0764
MA0131.1	MA0131.1	0.184
MA0135.1	MA0135.1	0.584
MA0136.1	MA0136.1	4.38173e-4
MA0137.2	MA0137.2	0.0246
MA0138.2	MA0138.2	0.562
MA0139.1	MA0139.1	0.546
MA0140.1	MA0140.1	0.535
MA0141.1	MA0141.1	0.481
MA0142.1	MA0142.1	0.358
MA0143.1	MA0143.1	0.282
MA0144.1	MA0144.1	0.842
MA0145.1	MA0145.1	0.0146
MA0146.1	MA0146.1	0.201
MA0147.1	MA0147.1	0.97
MA0148.1	MA0148.1	0.563
MA0149.1	MA0149.1	0.162
MA0150.1	MA0150.1	0.813
MA0152.1	MA0152.1	0.383
MA0153.1	MA0153.1	0.51
MA0154.1	MA0154.1	0.198
MA0155.1	MA0155.1	0.875
MA0156.1	MA0156.1	0.0103
MA0157.1	MA0157.1	0.0714
MA0159.1	MA0159.1	0.506
MA0160.1	MA0160.1	0.339
MA0162.1	MA0162.1	0.101
MA0163.1	MA0163.1	0.916
MA0164.1	MA0164.1	0.396
MA0258.1	MA0258.1	0.971
MA0259.1	MA0259.1	0.788

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11064

Novel motif	Logo	P-value
1	1	0.828
10	10	0.206
100	100	0.867
101	101	0.308
102	102	0.27
103	103	0.0573
104	104	0.916
105	105	0.208
106	106	0.0492
107	107	0.0479
108	108	0.204
109	109	0.0137
11	11	0.474
110	110	0.383
111	111	0.617
112	112	0.163
113	113	0.275
114	114	0.341
115	115	0.224
116	116	0.969
117	117	0.371
118	118	0.954
119	119	0.455
12	12	0.652
120	120	0.079
121	121	0.953
122	122	0.203
123	123	0.114
124	124	0.0952
125	125	0.838
126	126	0.31
127	127	0.139
128	128	0.341
129	129	0.0858
13	13	0.141
130	130	0.861
131	131	0.763
132	132	0.302
133	133	0.00839
134	134	0.167
135	135	0.988
136	136	0.0946
137	137	0.191
138	138	0.538
139	139	0.606
14	14	0.752
140	140	0.749
141	141	0.686
142	142	0.395
143	143	0.856
144	144	0.232
145	145	0.121
146	146	0.0895
147	147	0.0823
148	148	0.721
149	149	0.452
15	15	0.807
150	150	0.248
151	151	0.234
152	152	0.0142
153	153	0.57
154	154	0.897
155	155	0.986
156	156	0.811
157	157	0.671
158	158	0.0383
159	159	0.46
16	16	0.0308
160	160	0.281
161	161	0.344
162	162	0.512
163	163	0.685
164	164	0.849
165	165	0.772
166	166	0.321
167	167	0.0973
168	168	0.123
169	169	0.0457
17	17	0.256
18	18	0.144
19	19	0.953
2	2	0.0983
20	20	0.803
21	21	0.754
22	22	0.417
23	23	0.406
24	24	0.00718
25	25	0.753
26	26	0.516
27	27	0.437
28	28	0.755
29	29	0.62
3	3	0.505
30	30	0.0557
31	31	0.716
32	32	0.866
33	33	0.396
34	34	0.899
35	35	0.356
36	36	0.0839
37	37	0.25
38	38	0.62
39	39	0.102
4	4	0.892
40	40	0.0641
41	41	0.413
42	42	0.84
43	43	0.626
44	44	0.137
45	45	0.0765
46	46	0.683
47	47	0.543
48	48	0.187
49	49	0.703
5	5	0.967
50	50	0.478
51	51	0.686
52	52	0.181
53	53	0.513
54	54	0.479
55	55	0.251
56	56	0.394
57	57	0.577
58	58	0.988
59	59	0.151
6	6	0.157
60	60	0.347
61	61	0.903
62	62	0.787
63	63	0.202
64	64	0.826
65	65	0.707
66	66	0.583
67	67	0.924
68	68	0.24
69	69	0.0627
7	7	0.503
70	70	0.0541
71	71	0.482
72	72	0.563
73	73	0.00825
74	74	0.0504
75	75	0.431
76	76	0.38
77	77	0.00403
78	78	0.0718
79	79	0.651
8	8	0.349
80	80	0.873
81	81	0.793
82	82	0.427
83	83	0.96
84	84	0.618
85	85	0.51
86	86	0.908
87	87	0.0198
88	88	0.868
89	89	0.00568
9	9	0.965
90	90	0.596
91	91	0.571
92	92	0.484
93	93	0.964
94	94	0.744
95	95	0.087
96	96	0.987
97	97	0.799
98	98	0.758
99	99	0.0023

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11064

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000082 human epidermal keratinocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000082 (human epidermal keratinocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:11272-116H3
+|DRA_sample_Accession=CAGE@SAMD00005531
-|name=Keratinocyte - epidermal, donor1
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005531
-|sample_id=11272
+|accession_numbers=CAGE;DRX008312;DRR009184;DRZ000609;DRZ001994;DRZ011959;DRZ013344
-|rna_tube_id=116H3
+|accession_numbers_RNASeq=sRNA-Seq;DRX037015;DRR041381;DRZ007023
-|rna_box=116
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
-|rna_position=H3
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077
-|sample_cell_lot=N/A
-|sample_cell_catalog=N/A
-|sample_company=Cell Applications
-|rna_lot_number=1327.00000
-|rna_catalog_number=CA102-R10a
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=54 years old adult
-|sample_tissue=skin
-|sample_donor(cell lot)=
-|sample_sex=male
-|sample_age=54
-|sample_ethnicity=C
-|rna_rin=
-|rna_od260/230=
-|rna_od260/280=
-|sample_cell_type=keratinocyte
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
-|rna_weight_ug=10.00000
-|rna_concentration=0.83000
-|sample_note=
-|profile_hcage=CNhs11064,LSID723,release008,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=SRhi10003,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000035,CL:0000036,CL:0000063,CL:0000066,CL:0000076,CL:0000079,CL:0000114,CL:0000144,CL:0000220,CL:0000221,CL:0000237,CL:0000240,CL:0000255,CL:0000311,CL:0000312,CL:0000325,CL:0000357,CL:0000362,CL:0000548,CL:0000723,CL:0002077,CL:0002159,CL:0002321,CL:0002371
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001003,UBERON:0001062,UBERON:0002050,UBERON:0002097,UBERON:0002199,UBERON:0002416,UBERON:0002532,UBERON:0003102,UBERON:0004121,UBERON:0005423,UBERON:0007376,UBERON:0007383
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000082
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000312;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
+|ffid_belonging_in_development=CL:0000357,CL:0000114,CL:0000221
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 67: / Line 43: @@
 |fonse_treatment=
 |fonse_treatment_closure=
+|has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor1.CNhs11064.11272-116H3.hg38.nobarcode.ctss.bed.gz
+|id=FF:11272-116H3
+|is_a=EFO:0002091;;FF:0000082
+|is_obsolete=
+|library_id=CNhs11064
+|library_id_phase_based=2:CNhs11064
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11272
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GCCAAT.11272
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11272
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GCCAAT.11272
+|name=Keratinocyte - epidermal, donor1
+|namespace=FANTOM5
+|part_of=
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+|profile_hcage=CNhs11064,LSID723,release008,COMPLETED
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+|rna_concentration=0.83
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
+|rna_lot_number=1327
+|rna_od260/230=
+|rna_od260/280=
+|rna_position=H3
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=116H3
+|rna_weight_ug=10
+|rnaseq_library_id=SRhi10003.GCCAAT
+|sample_age=54
+|sample_category=primary cells
+|sample_cell_catalog=N/A
+|sample_cell_line=
+|sample_cell_lot=N/A
+|sample_cell_type=keratinocyte
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Cell Applications
+|sample_description=
+|sample_dev_stage=54 years old adult
+|sample_disease=
+|sample_donor(cell lot)=
+|sample_ethnicity=C
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.73094827948868e-230!GO:0005737;cytoplasm;1.6279443290891e-195!GO:0043226;organelle;1.1450810270816e-177!GO:0043229;intracellular organelle;5.03193214586519e-177!GO:0043231;intracellular membrane-bound organelle;7.84591814033786e-160!GO:0043227;membrane-bound organelle;1.2484738868382e-159!GO:0044422;organelle part;8.48948651473297e-131!GO:0044446;intracellular organelle part;1.85370112976064e-129!GO:0044444;cytoplasmic part;1.3328154881232e-126!GO:0032991;macromolecular complex;9.0627377301073e-85!GO:0044238;primary metabolic process;1.16700705293785e-81!GO:0044237;cellular metabolic process;5.4351855583828e-78!GO:0030529;ribonucleoprotein complex;2.03573078703852e-77!GO:0005515;protein binding;5.25781726294141e-72!GO:0043170;macromolecule metabolic process;3.74110959436443e-71!GO:0043233;organelle lumen;1.08434559380127e-64!GO:0031974;membrane-enclosed lumen;1.08434559380127e-64!GO:0003723;RNA binding;5.67041717249592e-61!GO:0044428;nuclear part;1.42676308392003e-59!GO:0005739;mitochondrion;2.16654995047741e-59!GO:0005634;nucleus;1.74314237271744e-55!GO:0019538;protein metabolic process;1.96602851558116e-52!GO:0031090;organelle membrane;1.01320448685047e-50!GO:0006412;translation;3.66273547903108e-49!GO:0005840;ribosome;8.25164948537816e-48!GO:0044267;cellular protein metabolic process;7.43788585467211e-45!GO:0009058;biosynthetic process;7.68476369003564e-45!GO:0044260;cellular macromolecule metabolic process;1.00343635906345e-44!GO:0016043;cellular component organization and biogenesis;1.16501110346641e-43!GO:0006396;RNA processing;3.45289962950587e-43!GO:0033036;macromolecule localization;1.19869981131479e-42!GO:0015031;protein transport;1.30487267228853e-42!GO:0043234;protein complex;3.97782675543689e-42!GO:0003735;structural constituent of ribosome;6.54951527937053e-42!GO:0044429;mitochondrial part;9.9865561381488e-41!GO:0045184;establishment of protein localization;1.38498278170358e-39!GO:0005829;cytosol;1.5395083347671e-39!GO:0044249;cellular biosynthetic process;1.62366423091846e-39!GO:0008104;protein localization;2.73517315226929e-39!GO:0031981;nuclear lumen;2.76051258340084e-38!GO:0009059;macromolecule biosynthetic process;3.59783524957168e-38!GO:0043283;biopolymer metabolic process;2.3893509133057e-37!GO:0033279;ribosomal subunit;4.00059702640405e-36!GO:0031967;organelle envelope;6.52528295624342e-36!GO:0031975;envelope;1.5938442315088e-35!GO:0043228;non-membrane-bound organelle;4.93331266019566e-35!GO:0043232;intracellular non-membrane-bound organelle;4.93331266019566e-35!GO:0010467;gene expression;6.37655361524091e-35!GO:0046907;intracellular transport;4.71813934698016e-34!GO:0016071;mRNA metabolic process;1.70341536735847e-32!GO:0065003;macromolecular complex assembly;3.2144179442502e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.20402996782715e-30!GO:0008380;RNA splicing;1.68786356797519e-30!GO:0006886;intracellular protein transport;9.94649774855864e-29!GO:0022607;cellular component assembly;1.07593460642917e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.35596930072799e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.988129237887e-28!GO:0006397;mRNA processing;2.57479897062076e-27!GO:0006996;organelle organization and biogenesis;4.33381328391498e-27!GO:0005740;mitochondrial envelope;5.76317476463373e-26!GO:0044445;cytosolic part;6.87856560076123e-25!GO:0031966;mitochondrial membrane;3.27534956633391e-24!GO:0012505;endomembrane system;1.29399165924815e-22!GO:0019866;organelle inner membrane;3.35514685139005e-22!GO:0005654;nucleoplasm;6.41300602829758e-22!GO:0005681;spliceosome;6.42450212592327e-22!GO:0051649;establishment of cellular localization;2.21457897275226e-21!GO:0051641;cellular localization;2.58551588600259e-21!GO:0005743;mitochondrial inner membrane;4.4241367075427e-21!GO:0016874;ligase activity;2.66437512573207e-20!GO:0005783;endoplasmic reticulum;2.77933036497227e-20!GO:0048770;pigment granule;5.80768563138501e-20!GO:0042470;melanosome;5.80768563138501e-20!GO:0000166;nucleotide binding;6.7598643470084e-20!GO:0016462;pyrophosphatase activity;8.15819508762722e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.44470655768079e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;1.15116301143824e-19!GO:0005730;nucleolus;2.86805416596866e-19!GO:0015935;small ribosomal subunit;2.95472361496685e-19!GO:0006119;oxidative phosphorylation;4.02830059267043e-19!GO:0017111;nucleoside-triphosphatase activity;1.11870575534212e-18!GO:0031980;mitochondrial lumen;5.34851781273241e-18!GO:0005759;mitochondrial matrix;5.34851781273241e-18!GO:0044451;nucleoplasm part;7.16851783890245e-18!GO:0015934;large ribosomal subunit;7.73471449257954e-18!GO:0005794;Golgi apparatus;1.3355912710034e-17!GO:0022618;protein-RNA complex assembly;1.38414249098853e-17!GO:0006457;protein folding;2.21180321759687e-17!GO:0044432;endoplasmic reticulum part;4.22211823086395e-17!GO:0006512;ubiquitin cycle;4.22625712069711e-17!GO:0043285;biopolymer catabolic process;4.036360027374e-16!GO:0044455;mitochondrial membrane part;5.13673325249643e-16!GO:0006605;protein targeting;6.10726739115476e-16!GO:0008134;transcription factor binding;1.66275179568796e-15!GO:0051186;cofactor metabolic process;2.27150567322314e-15!GO:0006259;DNA metabolic process;2.37688668398598e-15!GO:0043412;biopolymer modification;3.14245000664237e-15!GO:0044265;cellular macromolecule catabolic process;4.95893663169783e-15!GO:0009057;macromolecule catabolic process;6.2183550804209e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.01657187397114e-14!GO:0008135;translation factor activity, nucleic acid binding;1.02349440553554e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.73190515260008e-14!GO:0016070;RNA metabolic process;3.18371015917918e-14!GO:0017076;purine nucleotide binding;3.55574345624966e-14!GO:0032553;ribonucleotide binding;3.63628331616204e-14!GO:0032555;purine ribonucleotide binding;3.63628331616204e-14!GO:0030163;protein catabolic process;4.58906091361669e-14!GO:0006511;ubiquitin-dependent protein catabolic process;5.16351587529987e-14!GO:0019941;modification-dependent protein catabolic process;5.16351587529987e-14!GO:0043632;modification-dependent macromolecule catabolic process;5.16351587529987e-14!GO:0003676;nucleic acid binding;5.26764806823237e-14!GO:0044257;cellular protein catabolic process;6.42552651989574e-14!GO:0042254;ribosome biogenesis and assembly;6.65364844815942e-14!GO:0006464;protein modification process;7.97362208724922e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.36440543919694e-13!GO:0012501;programmed cell death;1.65997061783854e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.80581933021017e-13!GO:0044248;cellular catabolic process;2.38613630534197e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.44807418398893e-13!GO:0006915;apoptosis;3.27876853962687e-13!GO:0005789;endoplasmic reticulum membrane;4.88106316678458e-13!GO:0006461;protein complex assembly;5.57776201857627e-13!GO:0006732;coenzyme metabolic process;5.74562751079056e-13!GO:0048193;Golgi vesicle transport;6.57247987795737e-13!GO:0051082;unfolded protein binding;1.47816051317786e-12!GO:0005746;mitochondrial respiratory chain;1.61155126345376e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.07799889168897e-12!GO:0008219;cell death;2.81655420070311e-12!GO:0016265;death;2.81655420070311e-12!GO:0005761;mitochondrial ribosome;2.9523933982999e-12!GO:0000313;organellar ribosome;2.9523933982999e-12!GO:0043687;post-translational protein modification;3.50141258756107e-12!GO:0016192;vesicle-mediated transport;4.35790375836288e-12!GO:0007049;cell cycle;4.82290938682334e-12!GO:0006413;translational initiation;1.24721121673976e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.32013293874618e-11!GO:0003954;NADH dehydrogenase activity;1.32013293874618e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.32013293874618e-11!GO:0003743;translation initiation factor activity;1.37395288969116e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.56458203887959e-11!GO:0000375;RNA splicing, via transesterification reactions;3.56458203887959e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.56458203887959e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.45589194528758e-11!GO:0006913;nucleocytoplasmic transport;7.85540778582801e-11!GO:0006446;regulation of translational initiation;8.85271328578348e-11!GO:0005524;ATP binding;1.04732349495922e-10!GO:0006399;tRNA metabolic process;1.38514821434027e-10!GO:0005635;nuclear envelope;1.39370563964454e-10!GO:0032559;adenyl ribonucleotide binding;1.41230934356732e-10!GO:0008565;protein transporter activity;1.59996741831489e-10!GO:0030554;adenyl nucleotide binding;1.72068073610264e-10!GO:0051169;nuclear transport;2.00385144544991e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.58725554457176e-10!GO:0042775;organelle ATP synthesis coupled electron transport;3.50897957843092e-10!GO:0042773;ATP synthesis coupled electron transport;3.50897957843092e-10!GO:0031965;nuclear membrane;4.61308968478459e-10!GO:0008639;small protein conjugating enzyme activity;4.87126965913785e-10!GO:0009259;ribonucleotide metabolic process;5.02016692885965e-10!GO:0030964;NADH dehydrogenase complex (quinone);5.21662380529714e-10!GO:0045271;respiratory chain complex I;5.21662380529714e-10!GO:0005747;mitochondrial respiratory chain complex I;5.21662380529714e-10!GO:0019787;small conjugating protein ligase activity;5.32110564152867e-10!GO:0009056;catabolic process;6.68676126954557e-10!GO:0004842;ubiquitin-protein ligase activity;8.03357756098966e-10!GO:0003712;transcription cofactor activity;8.43291672541226e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.26950860833895e-09!GO:0043067;regulation of programmed cell death;1.32857338768281e-09!GO:0042981;regulation of apoptosis;1.49049871156436e-09!GO:0016604;nuclear body;1.5116352206295e-09!GO:0044453;nuclear membrane part;1.71200704272733e-09!GO:0006163;purine nucleotide metabolic process;1.90577180191454e-09!GO:0003924;GTPase activity;2.28798440569463e-09!GO:0005768;endosome;2.37694752229989e-09!GO:0005793;ER-Golgi intermediate compartment;2.89582586852087e-09!GO:0009150;purine ribonucleotide metabolic process;3.11202564059969e-09!GO:0016881;acid-amino acid ligase activity;3.87460423552879e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.19089960089519e-09!GO:0051188;cofactor biosynthetic process;5.4126455224619e-09!GO:0009141;nucleoside triphosphate metabolic process;5.49444093345317e-09!GO:0048475;coated membrane;5.84011746693587e-09!GO:0030117;membrane coat;5.84011746693587e-09!GO:0006364;rRNA processing;7.69917153367669e-09!GO:0051246;regulation of protein metabolic process;1.03132408823883e-08!GO:0009260;ribonucleotide biosynthetic process;1.10614273605786e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.13195765619303e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.14843485047411e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.20563279518563e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.20563279518563e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.20563279518563e-08!GO:0004386;helicase activity;1.32437844050352e-08!GO:0016072;rRNA metabolic process;1.3694041004345e-08!GO:0009055;electron carrier activity;1.52623538920734e-08!GO:0022402;cell cycle process;1.55641053482e-08!GO:0006164;purine nucleotide biosynthetic process;1.70578532790362e-08!GO:0017038;protein import;1.93103451073027e-08!GO:0016887;ATPase activity;2.22348860326717e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.22999460932924e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.22999460932924e-08!GO:0043038;amino acid activation;2.43620758005449e-08!GO:0006418;tRNA aminoacylation for protein translation;2.43620758005449e-08!GO:0043039;tRNA aminoacylation;2.43620758005449e-08!GO:0016607;nuclear speck;2.49090559509345e-08!GO:0006974;response to DNA damage stimulus;2.49090559509345e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.7419521689411e-08!GO:0042623;ATPase activity, coupled;2.92646378970417e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.13927967059461e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.13927967059461e-08!GO:0030120;vesicle coat;3.18961825205937e-08!GO:0030662;coated vesicle membrane;3.18961825205937e-08!GO:0005643;nuclear pore;3.5569328736873e-08!GO:0015986;ATP synthesis coupled proton transport;3.57949312134074e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.57949312134074e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.94576300418982e-08!GO:0007005;mitochondrion organization and biogenesis;5.22400536740312e-08!GO:0008026;ATP-dependent helicase activity;5.61314460445774e-08!GO:0006366;transcription from RNA polymerase II promoter;5.64094451143847e-08!GO:0044431;Golgi apparatus part;6.10220685462606e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.26824113895598e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.26824113895598e-08!GO:0048523;negative regulation of cellular process;6.6603007467828e-08!GO:0006916;anti-apoptosis;7.50312070406419e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.1241480321161e-07!GO:0043069;negative regulation of programmed cell death;1.49689905130169e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.65917176583195e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.03237921637226e-07!GO:0046034;ATP metabolic process;2.17595331052738e-07!GO:0000278;mitotic cell cycle;2.34037508693506e-07!GO:0009060;aerobic respiration;2.67155670450697e-07!GO:0065002;intracellular protein transport across a membrane;3.0046258491873e-07!GO:0050794;regulation of cellular process;3.0046258491873e-07!GO:0009108;coenzyme biosynthetic process;3.0765168261468e-07!GO:0043066;negative regulation of apoptosis;3.72573142644898e-07!GO:0006754;ATP biosynthetic process;5.35232838400619e-07!GO:0006753;nucleoside phosphate metabolic process;5.35232838400619e-07!GO:0016740;transferase activity;5.49513675984399e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;5.61412161589212e-07!GO:0000074;regulation of progression through cell cycle;6.38158266457821e-07!GO:0045333;cellular respiration;6.62382959510085e-07!GO:0051726;regulation of cell cycle;7.35472644113017e-07!GO:0005525;GTP binding;7.48273443135176e-07!GO:0048519;negative regulation of biological process;8.14392158098729e-07!GO:0019829;cation-transporting ATPase activity;9.40150510566399e-07!GO:0006888;ER to Golgi vesicle-mediated transport;9.51623755495061e-07!GO:0050657;nucleic acid transport;9.7413847602271e-07!GO:0051236;establishment of RNA localization;9.7413847602271e-07!GO:0050658;RNA transport;9.7413847602271e-07!GO:0016469;proton-transporting two-sector ATPase complex;9.91317978342886e-07!GO:0032446;protein modification by small protein conjugation;1.15943182152469e-06!GO:0006403;RNA localization;1.2232288403367e-06!GO:0016491;oxidoreductase activity;1.26564654892501e-06!GO:0009117;nucleotide metabolic process;1.26648440521669e-06!GO:0046930;pore complex;1.28165806743842e-06!GO:0006281;DNA repair;1.31964461464154e-06!GO:0016567;protein ubiquitination;1.41051296575095e-06!GO:0031252;leading edge;1.63072471363439e-06!GO:0006323;DNA packaging;1.69286611277109e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.87572899414156e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.87572899414156e-06!GO:0031988;membrane-bound vesicle;1.91068659597033e-06!GO:0006752;group transfer coenzyme metabolic process;1.95461800881186e-06!GO:0051170;nuclear import;2.00962272147592e-06!GO:0051276;chromosome organization and biogenesis;2.03400396881775e-06!GO:0006099;tricarboxylic acid cycle;2.13415689543289e-06!GO:0046356;acetyl-CoA catabolic process;2.13415689543289e-06!GO:0016787;hydrolase activity;2.19219355457573e-06!GO:0030532;small nuclear ribonucleoprotein complex;2.32478120986002e-06!GO:0000139;Golgi membrane;2.67654747379396e-06!GO:0044440;endosomal part;2.87051925668966e-06!GO:0010008;endosome membrane;2.87051925668966e-06!GO:0016126;sterol biosynthetic process;3.75860527068599e-06!GO:0008654;phospholipid biosynthetic process;4.53249884451043e-06!GO:0031982;vesicle;4.6515783208094e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.04908588138417e-06!GO:0006606;protein import into nucleus;5.32556831744552e-06!GO:0009719;response to endogenous stimulus;6.12141472931451e-06!GO:0006084;acetyl-CoA metabolic process;6.14306998439462e-06!GO:0005770;late endosome;6.57112012933075e-06!GO:0031410;cytoplasmic vesicle;7.6601349857315e-06!GO:0005773;vacuole;7.78077830145722e-06!GO:0051187;cofactor catabolic process;8.12437928820551e-06!GO:0009109;coenzyme catabolic process;8.13600075553031e-06!GO:0043623;cellular protein complex assembly;8.59574692361676e-06!GO:0045259;proton-transporting ATP synthase complex;1.0394525582699e-05!GO:0007398;ectoderm development;1.05644273470839e-05!GO:0016779;nucleotidyltransferase activity;1.26387146682517e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.76763737015802e-05!GO:0005769;early endosome;1.98475763503606e-05!GO:0032561;guanyl ribonucleotide binding;2.06210067917572e-05!GO:0019001;guanyl nucleotide binding;2.06210067917572e-05!GO:0048522;positive regulation of cellular process;2.26855190514202e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.28120509215494e-05!GO:0005798;Golgi-associated vesicle;2.28120509215494e-05!GO:0006793;phosphorus metabolic process;2.82105372679237e-05!GO:0006796;phosphate metabolic process;2.82105372679237e-05!GO:0042802;identical protein binding;2.82874437049869e-05!GO:0003724;RNA helicase activity;2.90939614722845e-05!GO:0051028;mRNA transport;2.90939614722845e-05!GO:0000245;spliceosome assembly;3.00670864727666e-05!GO:0003714;transcription corepressor activity;3.30596980978377e-05!GO:0006613;cotranslational protein targeting to membrane;3.33957802897774e-05!GO:0000323;lytic vacuole;3.353317764028e-05!GO:0005764;lysosome;3.353317764028e-05!GO:0048471;perinuclear region of cytoplasm;3.52740600929952e-05!GO:0016853;isomerase activity;3.65461607344818e-05!GO:0016568;chromatin modification;3.71477143694087e-05!GO:0005788;endoplasmic reticulum lumen;3.89482350371795e-05!GO:0008544;epidermis development;4.65235994388799e-05!GO:0019899;enzyme binding;5.14795347512911e-05!GO:0030118;clathrin coat;5.27672427678844e-05!GO:0007243;protein kinase cascade;5.39460952276819e-05!GO:0003713;transcription coactivator activity;5.97849993520522e-05!GO:0009967;positive regulation of signal transduction;6.85585349485274e-05!GO:0019867;outer membrane;7.33505454201528e-05!GO:0031968;organelle outer membrane;7.41701652396056e-05!GO:0016563;transcription activator activity;7.44055575025026e-05!GO:0008610;lipid biosynthetic process;7.58857753160334e-05!GO:0016564;transcription repressor activity;7.74121079427865e-05!GO:0051427;hormone receptor binding;8.05989140938549e-05!GO:0005839;proteasome core complex (sensu Eukaryota);8.69180053178041e-05!GO:0005667;transcription factor complex;8.7368662951784e-05!GO:0006695;cholesterol biosynthetic process;9.03170166999439e-05!GO:0000087;M phase of mitotic cell cycle;9.7844517347743e-05!GO:0065004;protein-DNA complex assembly;0.000103249480541164!GO:0005694;chromosome;0.000105772708689057!GO:0030867;rough endoplasmic reticulum membrane;0.000112476139703798!GO:0001726;ruffle;0.00012357860675964!GO:0008092;cytoskeletal protein binding;0.000125347378991311!GO:0007067;mitosis;0.000126463999638105!GO:0050789;regulation of biological process;0.000126463999638105!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000135238000552377!GO:0005905;coated pit;0.000143770650528313!GO:0003697;single-stranded DNA binding;0.000149807153788313!GO:0030119;AP-type membrane coat adaptor complex;0.000150715416041309!GO:0030036;actin cytoskeleton organization and biogenesis;0.000154401642024738!GO:0005762;mitochondrial large ribosomal subunit;0.000156379847871039!GO:0000315;organellar large ribosomal subunit;0.000156379847871039!GO:0035257;nuclear hormone receptor binding;0.000160373473054501!GO:0003899;DNA-directed RNA polymerase activity;0.000167024420611255!GO:0016310;phosphorylation;0.000171554181178809!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000173309529540238!GO:0043566;structure-specific DNA binding;0.000183920266240881!GO:0007264;small GTPase mediated signal transduction;0.000188988285364492!GO:0005741;mitochondrial outer membrane;0.000196437070702308!GO:0000151;ubiquitin ligase complex;0.00019823344612881!GO:0005791;rough endoplasmic reticulum;0.000202626805667802!GO:0043021;ribonucleoprotein binding;0.000204376060578954!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000210734216535964!GO:0019843;rRNA binding;0.00021258447232696!GO:0045454;cell redox homeostasis;0.000230940276771973!GO:0030131;clathrin adaptor complex;0.000241555856320258!GO:0022403;cell cycle phase;0.000263501930050209!GO:0006333;chromatin assembly or disassembly;0.000283285010841427!GO:0006612;protein targeting to membrane;0.00028847909000395!GO:0000785;chromatin;0.00028847909000395!GO:0051789;response to protein stimulus;0.00030564899153493!GO:0006986;response to unfolded protein;0.00030564899153493!GO:0006260;DNA replication;0.000306872376311479!GO:0044452;nucleolar part;0.000315450363953052!GO:0015630;microtubule cytoskeleton;0.000322762302332601!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000322988598613592!GO:0006979;response to oxidative stress;0.000348854304293461!GO:0005048;signal sequence binding;0.000351036683198929!GO:0045786;negative regulation of progression through cell cycle;0.000351061324691685!GO:0016859;cis-trans isomerase activity;0.000364870125948139!GO:0030216;keratinocyte differentiation;0.000367633704031976!GO:0065009;regulation of a molecular function;0.000371681749493424!GO:0004298;threonine endopeptidase activity;0.000378032909973287!GO:0030132;clathrin coat of coated pit;0.000387900384844233!GO:0031324;negative regulation of cellular metabolic process;0.000427053577203273!GO:0008186;RNA-dependent ATPase activity;0.000427053577203273!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000427987212669146!GO:0005885;Arp2/3 protein complex;0.000459028055158186!GO:0051252;regulation of RNA metabolic process;0.000491083069804955!GO:0046474;glycerophospholipid biosynthetic process;0.000494368997938179!GO:0051168;nuclear export;0.00050215795399185!GO:0005856;cytoskeleton;0.000509652780061651!GO:0016044;membrane organization and biogenesis;0.000545930182310826!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000547130861563609!GO:0000314;organellar small ribosomal subunit;0.000560550198556419!GO:0005763;mitochondrial small ribosomal subunit;0.000560550198556419!GO:0033116;ER-Golgi intermediate compartment membrane;0.000613941826297866!GO:0007010;cytoskeleton organization and biogenesis;0.000639158256755402!GO:0044427;chromosomal part;0.000643253637228367!GO:0030029;actin filament-based process;0.000645689838553469!GO:0006626;protein targeting to mitochondrion;0.000652449206271279!GO:0006402;mRNA catabolic process;0.000784682673183748!GO:0008250;oligosaccharyl transferase complex;0.000828331355668516!GO:0006091;generation of precursor metabolites and energy;0.000835524617996744!GO:0051301;cell division;0.000915480959130433!GO:0006839;mitochondrial transport;0.000922140202829388!GO:0007006;mitochondrial membrane organization and biogenesis;0.000925594121430766!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000931172938805261!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00095656470226249!GO:0030658;transport vesicle membrane;0.000963867060868391!GO:0004004;ATP-dependent RNA helicase activity;0.00100146434605503!GO:0048468;cell development;0.001002308746115!GO:0008033;tRNA processing;0.00100474448535334!GO:0009892;negative regulation of metabolic process;0.00112354530726945!GO:0045893;positive regulation of transcription, DNA-dependent;0.00116642833350644!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00118252118631554!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00123077018557158!GO:0030057;desmosome;0.00125711308052237!GO:0048518;positive regulation of biological process;0.00127551741821681!GO:0001533;cornified envelope;0.00134407636721314!GO:0046467;membrane lipid biosynthetic process;0.00139653425333806!GO:0051920;peroxiredoxin activity;0.00140490664189617!GO:0030031;cell projection biogenesis;0.00145549291976785!GO:0043488;regulation of mRNA stability;0.00145549291976785!GO:0043487;regulation of RNA stability;0.00145549291976785!GO:0015980;energy derivation by oxidation of organic compounds;0.00150040029189494!GO:0006891;intra-Golgi vesicle-mediated transport;0.00155703757156001!GO:0006414;translational elongation;0.00159268650760897!GO:0008632;apoptotic program;0.0017124564125334!GO:0003729;mRNA binding;0.0018273551027409!GO:0030176;integral to endoplasmic reticulum membrane;0.0018273551027409!GO:0009165;nucleotide biosynthetic process;0.00183071360971598!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00187333894862722!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00189448276407843!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00193310471168372!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00193721671630318!GO:0004576;oligosaccharyl transferase activity;0.00197443264107468!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00197443264107468!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00197443264107468!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00197443264107468!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00204850902253519!GO:0016197;endosome transport;0.00207669229675032!GO:0016363;nuclear matrix;0.00216738858536947!GO:0016481;negative regulation of transcription;0.00225848917876789!GO:0030663;COPI coated vesicle membrane;0.00225848917876789!GO:0030126;COPI vesicle coat;0.00225848917876789!GO:0050662;coenzyme binding;0.00225848917876789!GO:0000059;protein import into nucleus, docking;0.00226542315635198!GO:0046489;phosphoinositide biosynthetic process;0.00229036494547046!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00242641706878797!GO:0015992;proton transport;0.00262004919104056!GO:0006650;glycerophospholipid metabolic process;0.00263178261890164!GO:0043065;positive regulation of apoptosis;0.00263628181745659!GO:0043681;protein import into mitochondrion;0.00274414375823152!GO:0019222;regulation of metabolic process;0.00276364582060986!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00277435192360185!GO:0030133;transport vesicle;0.0027879139145!GO:0006401;RNA catabolic process;0.00286230409129329!GO:0006818;hydrogen transport;0.00290068777548314!GO:0003711;transcription elongation regulator activity;0.00292154069750398!GO:0016408;C-acyltransferase activity;0.00305833909064366!GO:0043068;positive regulation of programmed cell death;0.00309095977013004!GO:0008139;nuclear localization sequence binding;0.00310462907947981!GO:0018196;peptidyl-asparagine modification;0.00319647848475313!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00319647848475313!GO:0030880;RNA polymerase complex;0.00321176389551557!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00321782616409719!GO:0030660;Golgi-associated vesicle membrane;0.003266416284892!GO:0006383;transcription from RNA polymerase III promoter;0.003272570768614!GO:0045941;positive regulation of transcription;0.00331416997287053!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0033708381253823!GO:0016125;sterol metabolic process;0.00361934963897501!GO:0005813;centrosome;0.00362935634888!GO:0051098;regulation of binding;0.00365770490484349!GO:0035258;steroid hormone receptor binding;0.00374187697680445!GO:0030125;clathrin vesicle coat;0.00378010832696826!GO:0030665;clathrin coated vesicle membrane;0.00378010832696826!GO:0051128;regulation of cellular component organization and biogenesis;0.00413286742246731!GO:0006643;membrane lipid metabolic process;0.00417852705940405!GO:0030137;COPI-coated vesicle;0.00418614123510609!GO:0048500;signal recognition particle;0.00450460109589106!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00460523515596234!GO:0015399;primary active transmembrane transporter activity;0.00460523515596234!GO:0017166;vinculin binding;0.00485398406092034!GO:0030659;cytoplasmic vesicle membrane;0.00508000577591465!GO:0000279;M phase;0.00511394470086814!GO:0000049;tRNA binding;0.00564101565198259!GO:0008637;apoptotic mitochondrial changes;0.00581115942069821!GO:0030027;lamellipodium;0.00605450542797638!GO:0006368;RNA elongation from RNA polymerase II promoter;0.00647144998314844!GO:0006354;RNA elongation;0.0065926948792057!GO:0030384;phosphoinositide metabolic process;0.00672130189458317!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00672130189458317!GO:0000428;DNA-directed RNA polymerase complex;0.00672130189458317!GO:0048144;fibroblast proliferation;0.0068804153462076!GO:0048145;regulation of fibroblast proliferation;0.0068804153462076!GO:0050750;low-density lipoprotein receptor binding;0.00714788510306108!GO:0006644;phospholipid metabolic process;0.00731148680169882!GO:0006334;nucleosome assembly;0.00733404348021819!GO:0007265;Ras protein signal transduction;0.00759909344383908!GO:0048146;positive regulation of fibroblast proliferation;0.0077380368704626!GO:0015631;tubulin binding;0.0077380368704626!GO:0030521;androgen receptor signaling pathway;0.0078228992014832!GO:0003690;double-stranded DNA binding;0.00783443963209816!GO:0044255;cellular lipid metabolic process;0.00792071901339536!GO:0030134;ER to Golgi transport vesicle;0.00828406608485355!GO:0030032;lamellipodium biogenesis;0.00852093179484973!GO:0051329;interphase of mitotic cell cycle;0.00852408557315944!GO:0006595;polyamine metabolic process;0.00872856591160836!GO:0005815;microtubule organizing center;0.00904152166526536!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00908648848528148!GO:0008243;plasminogen activator activity;0.00952546978359059!GO:0044433;cytoplasmic vesicle part;0.00952546978359059!GO:0006417;regulation of translation;0.0095795180245721!GO:0051101;regulation of DNA binding;0.00958692832503606!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00970137743139473!GO:0045047;protein targeting to ER;0.00970137743139473!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00996842971256952!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00996842971256952!GO:0030127;COPII vesicle coat;0.01024756616361!GO:0012507;ER to Golgi transport vesicle membrane;0.01024756616361!GO:0006352;transcription initiation;0.0102620511518945!GO:0030984;kininogen binding;0.0103556181069461!GO:0004213;cathepsin B activity;0.0103556181069461!GO:0005149;interleukin-1 receptor binding;0.0104640065276824!GO:0031497;chromatin assembly;0.010620192084107!GO:0050790;regulation of catalytic activity;0.010636205229618!GO:0030833;regulation of actin filament polymerization;0.0107315227683262!GO:0043022;ribosome binding;0.0109443005852282!GO:0031902;late endosome membrane;0.0113175346090169!GO:0048487;beta-tubulin binding;0.0113510169867765!GO:0022890;inorganic cation transmembrane transporter activity;0.0115457741817996!GO:0004674;protein serine/threonine kinase activity;0.011804493723211!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0119447480075815!GO:0009112;nucleobase metabolic process;0.0124910637035714!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0124910637035714!GO:0045334;clathrin-coated endocytic vesicle;0.0125319564250674!GO:0008312;7S RNA binding;0.0126189319151361!GO:0031529;ruffle organization and biogenesis;0.0126987302583516!GO:0005684;U2-dependent spliceosome;0.0128163114073421!GO:0007034;vacuolar transport;0.0128677921278475!GO:0046483;heterocycle metabolic process;0.0129806966194087!GO:0006289;nucleotide-excision repair;0.013257189757372!GO:0035035;histone acetyltransferase binding;0.0135228923542421!GO:0051287;NAD binding;0.0136370086471632!GO:0006917;induction of apoptosis;0.0136370086471632!GO:0031072;heat shock protein binding;0.0136649370462119!GO:0005869;dynactin complex;0.0142497194037268!GO:0048037;cofactor binding;0.0142920676848624!GO:0051325;interphase;0.0150245017037291!GO:0043624;cellular protein complex disassembly;0.0152083855472821!GO:0046519;sphingoid metabolic process;0.0157692069751126!GO:0006405;RNA export from nucleus;0.0159092332430965!GO:0006509;membrane protein ectodomain proteolysis;0.0159092332430965!GO:0033619;membrane protein proteolysis;0.0159092332430965!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0164762797886616!GO:0000339;RNA cap binding;0.0164762797886616!GO:0000209;protein polyubiquitination;0.0167194773211095!GO:0008361;regulation of cell size;0.0168302214520464!GO:0003746;translation elongation factor activity;0.0169585280965054!GO:0012506;vesicle membrane;0.0170479003272571!GO:0051087;chaperone binding;0.0171626172441171!GO:0016251;general RNA polymerase II transcription factor activity;0.0171626172441171!GO:0005832;chaperonin-containing T-complex;0.0172039103261419!GO:0005874;microtubule;0.0172712387916012!GO:0008234;cysteine-type peptidase activity;0.0173736035908237!GO:0009116;nucleoside metabolic process;0.0176381654133216!GO:0008629;induction of apoptosis by intracellular signals;0.0176396499000738!GO:0012502;induction of programmed cell death;0.0179523409462415!GO:0043284;biopolymer biosynthetic process;0.0185120120140701!GO:0030041;actin filament polymerization;0.0187667237649156!GO:0006749;glutathione metabolic process;0.0189331153654811!GO:0044262;cellular carbohydrate metabolic process;0.0197063230693412!GO:0046822;regulation of nucleocytoplasmic transport;0.0202280567905245!GO:0032984;macromolecular complex disassembly;0.0202417724278334!GO:0001836;release of cytochrome c from mitochondria;0.0209226053669649!GO:0019752;carboxylic acid metabolic process;0.0209226053669649!GO:0006082;organic acid metabolic process;0.0212081797498016!GO:0006611;protein export from nucleus;0.0213577315718385!GO:0033673;negative regulation of kinase activity;0.0213577315718385!GO:0006469;negative regulation of protein kinase activity;0.0213577315718385!GO:0006376;mRNA splice site selection;0.0215473888925741!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0215473888925741!GO:0050681;androgen receptor binding;0.0219365267850111!GO:0051540;metal cluster binding;0.0226685413575786!GO:0051536;iron-sulfur cluster binding;0.0226685413575786!GO:0046870;cadmium ion binding;0.0227656299689553!GO:0016049;cell growth;0.0227879119658697!GO:0030518;steroid hormone receptor signaling pathway;0.0229944508311461!GO:0006778;porphyrin metabolic process;0.0234883985172713!GO:0033013;tetrapyrrole metabolic process;0.0234883985172713!GO:0065007;biological regulation;0.0236529763073939!GO:0005774;vacuolar membrane;0.0238577579552418!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0246735619623804!GO:0007266;Rho protein signal transduction;0.0252453256116634!GO:0005200;structural constituent of cytoskeleton;0.0253411925143658!GO:0051052;regulation of DNA metabolic process;0.0253782495381225!GO:0006950;response to stress;0.0254115468963066!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0257716965179208!GO:0043492;ATPase activity, coupled to movement of substances;0.0259167567934501!GO:0006607;NLS-bearing substrate import into nucleus;0.0268623686711677!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.027188022068605!GO:0031326;regulation of cellular biosynthetic process;0.0284589208969732!GO:0045045;secretory pathway;0.0284652064512427!GO:0007040;lysosome organization and biogenesis;0.0285915957454767!GO:0030128;clathrin coat of endocytic vesicle;0.0289849094584395!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0289849094584395!GO:0030122;AP-2 adaptor complex;0.0289849094584395!GO:0031625;ubiquitin protein ligase binding;0.0290340740896916!GO:0051348;negative regulation of transferase activity;0.0291593095165398!GO:0022406;membrane docking;0.0294653525117168!GO:0048278;vesicle docking;0.0294653525117168!GO:0045892;negative regulation of transcription, DNA-dependent;0.0295504527525943!GO:0006066;alcohol metabolic process;0.0297054265221064!GO:0006740;NADPH regeneration;0.0297054265221064!GO:0006098;pentose-phosphate shunt;0.0297054265221064!GO:0001666;response to hypoxia;0.029742518055066!GO:0004680;casein kinase activity;0.0297524545760039!GO:0006506;GPI anchor biosynthetic process;0.0298145130187734!GO:0003756;protein disulfide isomerase activity;0.0298905401628469!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0298905401628469!GO:0043241;protein complex disassembly;0.0300454519332972!GO:0009303;rRNA transcription;0.0302311442932922!GO:0006897;endocytosis;0.0302311442932922!GO:0010324;membrane invagination;0.0302311442932922!GO:0032507;maintenance of cellular protein localization;0.0310339759493338!GO:0007033;vacuole organization and biogenesis;0.0311344174383309!GO:0005758;mitochondrial intermembrane space;0.0316656502631361!GO:0008426;protein kinase C inhibitor activity;0.0316656502631361!GO:0009166;nucleotide catabolic process;0.0318516094936104!GO:0006007;glucose catabolic process;0.0319203641619588!GO:0001952;regulation of cell-matrix adhesion;0.031989559896653!GO:0033559;unsaturated fatty acid metabolic process;0.0321885729393788!GO:0006636;unsaturated fatty acid biosynthetic process;0.0321885729393788!GO:0006672;ceramide metabolic process;0.0322028893240735!GO:0048660;regulation of smooth muscle cell proliferation;0.0326493778227789!GO:0016272;prefoldin complex;0.0331329883904378!GO:0008180;signalosome;0.0332015027944656!GO:0006779;porphyrin biosynthetic process;0.0332769377204042!GO:0033014;tetrapyrrole biosynthetic process;0.0332769377204042!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0332970944214879!GO:0051881;regulation of mitochondrial membrane potential;0.0339012886222678!GO:0007050;cell cycle arrest;0.034792637406303!GO:0008538;proteasome activator activity;0.0349464880660162!GO:0006505;GPI anchor metabolic process;0.0351040748997744!GO:0006904;vesicle docking during exocytosis;0.0351817601053703!GO:0006497;protein amino acid lipidation;0.0351817601053703!GO:0006892;post-Golgi vesicle-mediated transport;0.0356437763984142!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0357012469567212!GO:0051272;positive regulation of cell motility;0.0359758746962797!GO:0040017;positive regulation of locomotion;0.0359758746962797!GO:0016407;acetyltransferase activity;0.0359804411784687!GO:0051539;4 iron, 4 sulfur cluster binding;0.0359804411784687!GO:0055092;sterol homeostasis;0.0359804411784687!GO:0042632;cholesterol homeostasis;0.0359804411784687!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0362310790867953!GO:0042158;lipoprotein biosynthetic process;0.0363827417331306!GO:0005862;muscle thin filament tropomyosin;0.0368892459017073!GO:0030145;manganese ion binding;0.0371879699074041!GO:0006984;ER-nuclear signaling pathway;0.0377504019321939!GO:0031901;early endosome membrane;0.038075632585938!GO:0031371;ubiquitin conjugating enzyme complex;0.0385038135116216!GO:0007041;lysosomal transport;0.0390303111242244!GO:0005819;spindle;0.0394332390521281!GO:0006144;purine base metabolic process;0.0395631897457203!GO:0031970;organelle envelope lumen;0.0395685820349044!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0395685820349044!GO:0022408;negative regulation of cell-cell adhesion;0.0395743220168768!GO:0006629;lipid metabolic process;0.0396552331876636!GO:0009889;regulation of biosynthetic process;0.0400648635814596!GO:0007032;endosome organization and biogenesis;0.0406139316465019!GO:0005938;cell cortex;0.0406699449753936!GO:0008299;isoprenoid biosynthetic process;0.0410230541136671!GO:0001558;regulation of cell growth;0.0410778117370575!GO:0007088;regulation of mitosis;0.0410822100393292!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0414735921149031!GO:0030100;regulation of endocytosis;0.0415793193223452!GO:0030911;TPR domain binding;0.0415793193223452!GO:0003684;damaged DNA binding;0.0416182228888774!GO:0003682;chromatin binding;0.0419193391793097!GO:0000096;sulfur amino acid metabolic process;0.0420133692029291!GO:0008601;protein phosphatase type 2A regulator activity;0.0425644253344393!GO:0008047;enzyme activator activity;0.0425644253344393!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0428721862139843!GO:0033043;regulation of organelle organization and biogenesis;0.0428721862139843!GO:0016746;transferase activity, transferring acyl groups;0.0430084418022836!GO:0003678;DNA helicase activity;0.0444022017265792!GO:0005912;adherens junction;0.0450282652233904!GO:0008415;acyltransferase activity;0.0450282652233904!GO:0009119;ribonucleoside metabolic process;0.0456800976158727!GO:0008203;cholesterol metabolic process;0.0461351235127236!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0461351235127236!GO:0030149;sphingolipid catabolic process;0.0461351235127236!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0461351235127236!GO:0008154;actin polymerization and/or depolymerization;0.0467369512610062!GO:0030503;regulation of cell redox homeostasis;0.047262057051022!GO:0031124;mRNA 3'-end processing;0.047619941887746!GO:0046983;protein dimerization activity;0.0477059888747581!GO:0051336;regulation of hydrolase activity;0.0479435091041723!GO:0006520;amino acid metabolic process;0.0480461107864275!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.048397532800761!GO:0042168;heme metabolic process;0.0497698822365001
+|sample_id=11272
+|sample_note=
+|sample_sex=male
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=skin
+|top_motifs=TBX4,5:3.16544763922;TP53:2.72933226066;ZEB1:1.79273326391;NKX2-3_NKX2-5:1.64454905216;PPARG:1.62374419194;SPZ1:1.5148142412;TEF:1.51392666477;SNAI1..3:1.51357943036;ZNF148:1.36746292356;TFCP2:1.36457364326;HAND1,2:1.33395845247;T:1.30051022462;PAX1,9:1.2751774838;ONECUT1,2:1.26635124391;FOXQ1:1.25731187537;NKX2-2,8:1.24403470308;NKX3-2:1.19646169824;ADNP_IRX_SIX_ZHX:1.18847938469;TEAD1:1.14509516512;TBP:1.1111493998;VSX1,2:1.05018640042;PDX1:1.03508867329;SP1:0.993651184019;XCPE1{core}:0.97531985569;LMO2:0.959035562732;bHLH_family:0.958192900381;STAT5{A,B}:0.886629101904;ZNF238:0.881469342475;GLI1..3:0.873121159522;HOX{A4,D4}:0.837525770192;MTF1:0.831278863208;LHX3,4:0.815703864321;TFAP2{A,C}:0.800044791631;FOXM1:0.772622374406;ZNF423:0.764594714363;FOS_FOS{B,L1}_JUN{B,D}:0.687895076199;IKZF1:0.674611439837;EP300:0.665134256692;ZIC1..3:0.653298684102;SOX17:0.646237197752;MYOD1:0.614726402736;EBF1:0.611570490164;UFEwm:0.545607180733;KLF4:0.528007718777;NFIL3:0.517351268951;RXR{A,B,G}:0.511185985518;ZBTB6:0.494475809887;NANOG:0.492908239505;FOSL2:0.478635501166;BACH2:0.472095604758;GCM1,2:0.434651941983;HIF1A:0.419576144361;CRX:0.404466717109;HLF:0.401257989403;ARID5B:0.390913782533;SMAD1..7,9:0.388501690194;MAZ:0.356864731271;GFI1B:0.337829469125;AR:0.330078861758;NR5A1,2:0.321788048765;GTF2A1,2:0.320311430528;POU1F1:0.313520000294;CDC5L:0.293581056257;NKX2-1,4:0.291930450057;RBPJ:0.263708195055;POU6F1:0.243473303599;FOXL1:0.214669714186;ELK1,4_GABP{A,B1}:0.202369876734;CEBPA,B_DDIT3:0.186412842443;EN1,2:0.169405996114;PAX5:0.164593906085;ZNF143:0.159352975774;EVI1:0.0980075202792;NR1H4:0.0928323809516;REST:0.0650472575595;TLX1..3_NFIC{dimer}:0.0403592021523;HSF1,2:0.0319032185693;RXRA_VDR{dimer}:0.0268308676827;HOX{A5,B5}:0.0107850501129;NKX6-1,2:0.0100820040343;PAX8:0.00394945138514;MED-1{core}:0.000995808264179;FOXN1:-0.00238236021455;PAX4:-0.00848745784979;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0494786077364;TOPORS:-0.0521299742958;GTF2I:-0.0643096691568;TFAP4:-0.0729922624923;ALX4:-0.0752712470127;PAX2:-0.0846895464329;NFE2L1:-0.0943256144744;RREB1:-0.110980592119;YY1:-0.114126727399;HNF1A:-0.138499884705;ESR1:-0.154715541716;MYFfamily:-0.155505990083;POU3F1..4:-0.156613661197;NR3C1:-0.171628433291;HES1:-0.183508792264;NHLH1,2:-0.18656619806;LEF1_TCF7_TCF7L1,2:-0.188071315757;NFE2:-0.19636693046;HMGA1,2:-0.215603764187;FOXO1,3,4:-0.223213707406;NFIX:-0.223845056198;NFE2L2:-0.229220871819;NRF1:-0.239964433229;MTE{core}:-0.245593400712;HMX1:-0.246694137652;IRF7:-0.248335049029;FOX{F1,F2,J1}:-0.249307455877;SOX2:-0.251353330747;GZF1:-0.252171048994;ATF2:-0.285519874527;NFKB1_REL_RELA:-0.2872635629;MYBL2:-0.301120876107;HIC1:-0.30566995014;NKX3-1:-0.309528316017;HNF4A_NR2F1,2:-0.328973359071;PAX6:-0.336954249144;MAFB:-0.33899485405;OCT4_SOX2{dimer}:-0.342311997704;SOX{8,9,10}:-0.369282355058;JUN:-0.397244469024;POU5F1:-0.400395702076;SPI1:-0.414583160251;ETS1,2:-0.417704609475;TFAP2B:-0.433707802448;TFDP1:-0.447772941817;SPIB:-0.458175341193;ELF1,2,4:-0.45994264889;RFX2..5_RFXANK_RFXAP:-0.461937678895;ATF5_CREB3:-0.467336311024;NFATC1..3:-0.470616345646;POU2F1..3:-0.493144032028;PATZ1:-0.509539373956;TLX2:-0.510550436162;GATA6:-0.510800932957;PITX1..3:-0.514734252856;NR6A1:-0.539190839999;ATF4:-0.547717826043;HOX{A6,A7,B6,B7}:-0.557069906585;ZFP161:-0.567271406595;NFY{A,B,C}:-0.569423049453;RFX1:-0.582797921047;RUNX1..3:-0.590052060646;SREBF1,2:-0.594255607156;GATA4:-0.598732490027;STAT2,4,6:-0.605031618016;HOXA9_MEIS1:-0.612830153398;GFI1:-0.651035955267;PRDM1:-0.657136097166;ZNF384:-0.678118911798;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.70132862464;ZBTB16:-0.738141180486;STAT1,3:-0.744788557122;FOXP3:-0.745015796236;MEF2{A,B,C,D}:-0.771676826534;SRF:-0.775473154958;CUX2:-0.787252147874;EGR1..3:-0.789008377596;MYB:-0.809471597705;E2F1..5:-0.826762822898;PBX1:-0.855587324667;CREB1:-0.863580449731;MZF1:-0.866126590551;AHR_ARNT_ARNT2:-0.869777506812;FOXA2:-0.873754830839;NANOG{mouse}:-0.88158797212;BPTF:-0.892701737133;DBP:-0.917573674674;FOX{I1,J2}:-0.923587409465;DMAP1_NCOR{1,2}_SMARC:-0.932653133738;AIRE:-0.974415006305;FOXP1:-0.988902692924;ESRRA:-0.99829326495;SOX5:-1.02059355952;IRF1,2:-1.04521238592;CDX1,2,4:-1.07510768029;PAX3,7:-1.07884621995;TGIF1:-1.09232741521;PRRX1,2:-1.12125942213;RORA:-1.12514354533;FOX{D1,D2}:-1.14448457859;ATF6:-1.15160116225;IKZF2:-1.21134488731;TAL1_TCF{3,4,12}:-1.21671399566;FOXD3:-1.33218368072;BREu{core}:-1.40896841768;XBP1:-1.44333897976;ALX1:-1.44994244126;HBP1_HMGB_SSRP1_UBTF:-1.58772883856
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11272-116H3;search_select_hide=table117:FF:11272-116H3
 }}

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FF:11272-116H3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:29, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0