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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008121
|DRA_sample_Accession=CAGE@SAMD00005486
|accession_numbers=CAGE;DRX008229;DRR009101;DRZ000526;DRZ001911
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005486
|accession_numbers=CAGE;DRX008229;DRR009101;DRZ000526;DRZ001911;DRZ011876;DRZ013261
|accession_numbers_RNASeq=sRNA-Seq;DRX037091;DRR041457;DRZ007099
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0004573,UBERON:0000487,UBERON:0005800,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001515,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0004573,UBERON:0000487,UBERON:0005800,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001515,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544,CL:0002545
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544,CL:0002545
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.26!237.88!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.12!129.42!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.99!97.80!ERG;;chr12:96588368..96588394,+!p3@ELK3!1.65!113.98!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.59!42.65!TCF4;;chr8:55370487..55370503,+!p1@SOX17!1.57!36.03!SOX17;;chr7:15726243..15726293,-!p2@MEOX2!1.55!34.19!MEOX2;;chr17:6926362..6926377,+!p1@BCL6B!1.54!33.46!BCL6B;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.39!23.53!ZBED1;;chr1:6479968..6479986,-!p1@HES2!1.34!20.96!HES2;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.49!MEOX2;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.71!TFEC;;chr18:22932080..22932170,-!p1@ZNF521!1.19!60.66!ZNF521;;chr19:13213511..13213545,-!p2@LYL1!1.19!15.81!LYL1;;chr17:46682321..46682362,-!p1@HOXB6!1.18!13.97!HOXB6;;chr6:34204921..34204939,+!p3@HMGA1!1.17!409.94!HMGA1;;chr1:214161272..214161322,+!p1@PROX1!1.17!19.49!PROX1;;chr1:47695003..47695042,-!p2@TAL1!1.13!12.50!TAL1;;chr10:94449703..94449718,+!p1@HHEX!1.12!47.43!HHEX;;chr2:177053386..177053402,+!p1@HOXD1!1.12!12.13!HOXD1;;chr15:83953397..83953425,-!p1@BNC1!1.07!12.50!BNC1;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.29!BNC2;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.93!HOXD8;;chr3:128206762..128206781,-!p2@GATA2!1.03!61.03!GATA2;;chr3:169381420..169381535,-!p1@MECOM!1.02!11.03!MECOM;;chr1:200008734..200008765,+!p2@NR5A2!1.02!9.56!NR5A2;;chr3:168864315..168864339,-!p2@MECOM!0.98!14.34!MECOM;;chr15:96874927..96874938,+!p8@NR2F2!0.94!16.91!NR2F2;;chr4:146403912..146403972,+!p5@SMAD1!0.94!9.93!SMAD1;;chr10:31288370..31288393,-!p3@ZNF438!0.94!7.72!ZNF438;;chr19:13213399..13213414,-!p6@LYL1!0.92!7.35!LYL1;;chr9:124991204..124991246,-!p1@LHX6!0.92!7.35!LHX6;;chr7:15726220..15726236,-!p4@MEOX2!0.90!6.99!MEOX2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!9.93!HMGA2;;chr5:88178983..88179012,-!p1@MEF2C!0.88!53.31!MEF2C;;chr4:146402843..146402864,+!p3@SMAD1!0.88!13.60!SMAD1;;chr15:96874012..96874042,+!p2@NR2F2!0.87!61.40!NR2F2;;chr17:46688334..46688385,-!p1@HOXB7!0.87!9.56!HOXB7;;chr17:41622925..41622976,-!p3@ETV4!0.86!9.56!ETV4;;chr18:53068982..53068993,-!p20@TCF4!0.86!6.25!TCF4;;chr6:21597765..21597779,+!p2@SOX4!0.85!52.21!SOX4;;chr20:50721803..50721857,-!p2@ZFP64!0.84!9.56!ZFP64;;chr19:53496768..53496799,-!p1@ZNF702P!0.83!9.19!ZNF702P;;chr9:14083467..14083483,-!p4@NFIB!0.82!14.71!NFIB;;chr9:14082760..14082775,-!p6@NFIB!0.82!9.56!NFIB;;chr19:13213662..13213686,-!p1@LYL1!0.82!8.46!LYL1;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.51!HOXB8;;chr5:71803177..71803255,-!p1@ZNF366!0.81!5.51!ZNF366;;chr7:27196267..27196311,-!p1@HOXA7!0.81!5.51!HOXA7;;chr9:14314131..14314147,-!p2@NFIB!0.80!31.99!NFIB;;chr15:96873984..96873999,+!p3@NR2F2!0.79!41.18!NR2F2;;chr15:96873921..96873946,+!p1@NR2F2!0.78!153.68!NR2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.77!9.93!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.90!HMGA2;;chr3:168865194..168865245,-!p3@MECOM!0.76!6.25!MECOM;;chr1:158979792..158979814,+!p2@IFI16!0.75!48.90!IFI16;;chr20:50159198..50159299,-!p1@NFATC2!0.75!6.99!NFATC2;;chr9:14314566..14314618,-!p1@NFIB!0.73!59.19!NFIB;;chr18:53177984..53178004,-!p17@TCF4!0.73!4.41!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.73!4.41!LYL1;;chr5:92918919..92918942,+!p1@NR2F1!0.71!20.59!NR2F1;;chr11:128563948..128564003,+!p1@FLI1!0.70!54.78!FLI1;;chr10:31288398..31288455,-!p2@ZNF438!0.70!4.78!ZNF438;;chr12:80084018..80084035,-!p17@PAWR!0.70!4.04!PAWR;;chr2:237077022..237077038,-!p1@GBX2!0.70!4.04!GBX2;;chr3:21792682..21792720,-!p1@ZNF385D!0.70!4.04!ZNF385D;;chr6:130339710..130339745,+!p1@L3MBTL3!0.69!34.93!L3MBTL3;;chr15:96876966..96877017,+!p12@NR2F2!0.69!5.88!NR2F2;;chr10:94449675..94449694,+!p2@HHEX!0.67!11.03!HHEX;;chr12:66218255..66218304,+!p3@HMGA2!0.67!11.03!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.67!10.66!ZFPM2;;chr15:96874145..96874166,+!p7@NR2F2!0.67!7.72!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.67!3.68!HOXB4;;chr17:46691732..46691766,-!p4@HOXB8!0.67!3.68!HOXB8;;chr7:27169801..27169844,-!p2@HOXA4!0.67!3.68!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.67!3.68!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.67!3.68!SOX17;;chr1:61869752..61869782,+!p13@NFIA!0.67!3.68!NFIA;;chr12:66218836..66218888,+!p1@HMGA2!0.66!38.97!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!0.66!5.15!HOXB7;;chr3:178789522..178789564,-!p2@ZMAT3!0.65!29.78!ZMAT3;;chr18:53257001..53257015,-!p5@TCF4!0.64!6.25!TCF4;;chr2:46524537..46524553,+!p1@EPAS1!0.63!388.62!EPAS1;;chr12:3069037..3069119,+!p2@TEAD4!0.63!12.87!TEAD4;;chr15:96874244..96874259,+!p5@NR2F2!0.63!8.82!NR2F2;;chr1:205601064..205601087,-!p4@ELK4!0.63!6.99!ELK4;;chr13:37494365..37494381,-!p1@SMAD9!0.63!6.25!SMAD9;;chr12:66218378..66218401,+!p6@HMGA2!0.63!5.51!HMGA2;;chr11:65429891..65429915,-!p7@RELA!0.63!3.31!RELA;;chr18:53068893..53068902,-!p28@TCF4!0.63!3.31!TCF4;;chr18:53068940..53068951,-!p21@TCF4!0.63!3.31!TCF4;;chr7:139741594..139741615,-!p5@PARP12!0.63!3.31!PARP12;;chr7:15726176..15726191,-!p3@MEOX2!0.63!3.31!MEOX2;;chr4:146402827..146402839,+!p1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|ffid_belonging_in_development=CL:0002546,CL:0000222
|ffid_belonging_in_development=CL:0002546,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
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|has_quality=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg38.nobarcode.ctss.bed.gz
|id=FF:11266-116G6
|id=FF:11266-116G6
|is_a=EFO:0002091;;FF:0000051
|is_a=EFO:0002091;;FF:0000051
|is_obsolete=
|is_obsolete=
|library_id=CNhs11926
|library_id=CNhs11926
|library_id_phase_based=2:CNhs11926
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11266
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.TGACCA.11266
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|name=Endothelial Cells - Thoracic, donor1
|name=Endothelial Cells - Thoracic, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 49: Line 65:
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Line 65: Line 82:
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|sample_category=primary cells
Line 88: Line 106:
|top_motifs=SOX{8,9,10}:1.83831374469;FOX{I1,J2}:1.80478927114;NFATC1..3:1.50544297905;RXR{A,B,G}:1.43209003981;FOXD3:1.28237301049;PAX6:1.12324759263;IKZF2:1.07299841269;ADNP_IRX_SIX_ZHX:1.04805352813;HAND1,2:1.04312075593;ELF1,2,4:1.03599904256;TLX1..3_NFIC{dimer}:1.02077765771;AR:1.01242912112;ALX1:0.933711729;HBP1_HMGB_SSRP1_UBTF:0.904599461158;FOXL1:0.802392567767;SOX2:0.771466073526;LEF1_TCF7_TCF7L1,2:0.768246784883;bHLH_family:0.756342501191;PAX8:0.737388349774;POU3F1..4:0.735959908202;TP53:0.72008697762;ETS1,2:0.683677004155;NR3C1:0.648944181723;IKZF1:0.634530218574;GATA6:0.629719324998;NR5A1,2:0.622918191885;NKX2-2,8:0.587178955307;ARID5B:0.57371843325;NFE2L1:0.560379016239;RBPJ:0.559390161393;SPZ1:0.552347415997;FOXQ1:0.548326680769;SPIB:0.532266817953;MYB:0.525875433306;POU1F1:0.511915030959;E2F1..5:0.483316803954;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.474800364733;SOX5:0.468313535977;TFAP4:0.452537943497;LHX3,4:0.446342222165;HMGA1,2:0.444200536178;PBX1:0.428784456955;TFDP1:0.420868754465;SMAD1..7,9:0.418763529142;ZFP161:0.396337767231;HES1:0.393448926482;SOX17:0.388415742283;PITX1..3:0.385888368657;PAX1,9:0.373378667372;GFI1B:0.347939027537;NRF1:0.316858665313;DMAP1_NCOR{1,2}_SMARC:0.314496231499;TEF:0.29772979826;FOXA2:0.295741674296;GZF1:0.277519920893;TEAD1:0.26261918685;GATA4:0.24571875084;PAX5:0.234349339286;ZNF143:0.221641432327;TFAP2{A,C}:0.220407778336;NKX3-2:0.197142806142;STAT2,4,6:0.188983327922;GFI1:0.182243113371;ZNF148:0.181398227832;NFIX:0.174886752523;PAX4:0.149053402782;NFE2:0.141753887898;NFE2L2:0.132154280317;BACH2:0.11765685704;CRX:0.111241837521;EVI1:0.105829265263;NKX2-3_NKX2-5:0.0968836579199;FOS_FOS{B,L1}_JUN{B,D}:0.0923035499938;FOXM1:0.0919835047584;ZBTB6:0.080641959784;XCPE1{core}:0.0794744719409;ONECUT1,2:0.0747059120989;REST:0.0710321496967;HIC1:0.0695745378719;HNF4A_NR2F1,2:0.0628893012972;NHLH1,2:0.0611207382133;ZNF238:0.0524379106062;SPI1:0.0444490016762;CDC5L:0.0405518554621;T:0.0335268023997;RORA:0.0323240907395;YY1:0.0113767660296;NFY{A,B,C}:0.0111679319434;UFEwm:0.00380889932107;NANOG:-0.00397597231745;PRDM1:-0.0141517397866;FOXP1:-0.0155771399886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0211816344678;MYOD1:-0.030582667111;HOX{A5,B5}:-0.0395939159118;EN1,2:-0.077585916171;MTF1:-0.0934314103905;FOSL2:-0.0968790193419;HNF1A:-0.10210064508;MTE{core}:-0.104874321996;TGIF1:-0.110597027341;PRRX1,2:-0.126379875441;LMO2:-0.142280529427;AHR_ARNT_ARNT2:-0.146564264264;DBP:-0.166774646098;FOXN1:-0.180389992472;KLF4:-0.181606475193;SP1:-0.183599480749;CUX2:-0.18667415925;POU6F1:-0.192277100266;MED-1{core}:-0.201468068502;TLX2:-0.207508536487;MEF2{A,B,C,D}:-0.215629470375;NFKB1_REL_RELA:-0.216642224612;MYBL2:-0.21955930354;GCM1,2:-0.258967938905;NANOG{mouse}:-0.274360435058;TAL1_TCF{3,4,12}:-0.275955833132;GTF2I:-0.275986361695;ZIC1..3:-0.282824706892;MAZ:-0.291544321364;RFX1:-0.301581038722;AIRE:-0.303345482448;STAT1,3:-0.303458136666;PAX2:-0.31029802182;TBP:-0.316739880439;HLF:-0.354253095174;TFAP2B:-0.364616441152;RREB1:-0.404912351996;PPARG:-0.407925550873;SNAI1..3:-0.411017159406;POU5F1:-0.417048535182;SRF:-0.419916801046;ZNF423:-0.428131581393;VSX1,2:-0.435723428906;HOXA9_MEIS1:-0.438363539053;ELK1,4_GABP{A,B1}:-0.439829571499;MZF1:-0.440120960154;ATF2:-0.440488193955;ZNF384:-0.460145949809;OCT4_SOX2{dimer}:-0.468961294008;CREB1:-0.470092004731;TFCP2:-0.471210641311;PAX3,7:-0.47166343376;STAT5{A,B}:-0.47713710725;GTF2A1,2:-0.483712867184;IRF1,2:-0.491834865322;FOX{D1,D2}:-0.496491215049;RUNX1..3:-0.522824326304;HIF1A:-0.530191939402;ATF6:-0.532301501345;ESR1:-0.533048063547;BPTF:-0.537873435708;HMX1:-0.538576747823;CEBPA,B_DDIT3:-0.544009295598;ZBTB16:-0.576752539288;XBP1:-0.577371383903;EGR1..3:-0.581533725141;MAFB:-0.603490050265;EBF1:-0.610750933105;HSF1,2:-0.618758752902;GLI1..3:-0.64125045368;ZEB1:-0.648875735934;IRF7:-0.668442672161;NFIL3:-0.68996621098;PATZ1:-0.69048311574;TBX4,5:-0.699717320544;JUN:-0.700259027909;RXRA_VDR{dimer}:-0.715600225299;FOXO1,3,4:-0.716240847865;POU2F1..3:-0.734787083228;ATF5_CREB3:-0.736455332021;EP300:-0.740081777831;ESRRA:-0.749257189269;CDX1,2,4:-0.755215766781;BREu{core}:-0.755267492442;NKX2-1,4:-0.758738640856;FOXP3:-0.765758552177;ALX4:-0.770340051484;SREBF1,2:-0.784208349557;ATF4:-0.80264619915;HOX{A4,D4}:-0.836935955044;NKX3-1:-0.837252433883;TOPORS:-0.87594738114;RFX2..5_RFXANK_RFXAP:-0.876230522963;PDX1:-0.889818188675;FOX{F1,F2,J1}:-0.893418346366;MYFfamily:-0.896296844606;NR1H4:-0.942960813548;NR6A1:-1.00990986834;NKX6-1,2:-1.01361372026;HOX{A6,A7,B6,B7}:-1.26977998967
|top_motifs=SOX{8,9,10}:1.83831374469;FOX{I1,J2}:1.80478927114;NFATC1..3:1.50544297905;RXR{A,B,G}:1.43209003981;FOXD3:1.28237301049;PAX6:1.12324759263;IKZF2:1.07299841269;ADNP_IRX_SIX_ZHX:1.04805352813;HAND1,2:1.04312075593;ELF1,2,4:1.03599904256;TLX1..3_NFIC{dimer}:1.02077765771;AR:1.01242912112;ALX1:0.933711729;HBP1_HMGB_SSRP1_UBTF:0.904599461158;FOXL1:0.802392567767;SOX2:0.771466073526;LEF1_TCF7_TCF7L1,2:0.768246784883;bHLH_family:0.756342501191;PAX8:0.737388349774;POU3F1..4:0.735959908202;TP53:0.72008697762;ETS1,2:0.683677004155;NR3C1:0.648944181723;IKZF1:0.634530218574;GATA6:0.629719324998;NR5A1,2:0.622918191885;NKX2-2,8:0.587178955307;ARID5B:0.57371843325;NFE2L1:0.560379016239;RBPJ:0.559390161393;SPZ1:0.552347415997;FOXQ1:0.548326680769;SPIB:0.532266817953;MYB:0.525875433306;POU1F1:0.511915030959;E2F1..5:0.483316803954;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.474800364733;SOX5:0.468313535977;TFAP4:0.452537943497;LHX3,4:0.446342222165;HMGA1,2:0.444200536178;PBX1:0.428784456955;TFDP1:0.420868754465;SMAD1..7,9:0.418763529142;ZFP161:0.396337767231;HES1:0.393448926482;SOX17:0.388415742283;PITX1..3:0.385888368657;PAX1,9:0.373378667372;GFI1B:0.347939027537;NRF1:0.316858665313;DMAP1_NCOR{1,2}_SMARC:0.314496231499;TEF:0.29772979826;FOXA2:0.295741674296;GZF1:0.277519920893;TEAD1:0.26261918685;GATA4:0.24571875084;PAX5:0.234349339286;ZNF143:0.221641432327;TFAP2{A,C}:0.220407778336;NKX3-2:0.197142806142;STAT2,4,6:0.188983327922;GFI1:0.182243113371;ZNF148:0.181398227832;NFIX:0.174886752523;PAX4:0.149053402782;NFE2:0.141753887898;NFE2L2:0.132154280317;BACH2:0.11765685704;CRX:0.111241837521;EVI1:0.105829265263;NKX2-3_NKX2-5:0.0968836579199;FOS_FOS{B,L1}_JUN{B,D}:0.0923035499938;FOXM1:0.0919835047584;ZBTB6:0.080641959784;XCPE1{core}:0.0794744719409;ONECUT1,2:0.0747059120989;REST:0.0710321496967;HIC1:0.0695745378719;HNF4A_NR2F1,2:0.0628893012972;NHLH1,2:0.0611207382133;ZNF238:0.0524379106062;SPI1:0.0444490016762;CDC5L:0.0405518554621;T:0.0335268023997;RORA:0.0323240907395;YY1:0.0113767660296;NFY{A,B,C}:0.0111679319434;UFEwm:0.00380889932107;NANOG:-0.00397597231745;PRDM1:-0.0141517397866;FOXP1:-0.0155771399886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0211816344678;MYOD1:-0.030582667111;HOX{A5,B5}:-0.0395939159118;EN1,2:-0.077585916171;MTF1:-0.0934314103905;FOSL2:-0.0968790193419;HNF1A:-0.10210064508;MTE{core}:-0.104874321996;TGIF1:-0.110597027341;PRRX1,2:-0.126379875441;LMO2:-0.142280529427;AHR_ARNT_ARNT2:-0.146564264264;DBP:-0.166774646098;FOXN1:-0.180389992472;KLF4:-0.181606475193;SP1:-0.183599480749;CUX2:-0.18667415925;POU6F1:-0.192277100266;MED-1{core}:-0.201468068502;TLX2:-0.207508536487;MEF2{A,B,C,D}:-0.215629470375;NFKB1_REL_RELA:-0.216642224612;MYBL2:-0.21955930354;GCM1,2:-0.258967938905;NANOG{mouse}:-0.274360435058;TAL1_TCF{3,4,12}:-0.275955833132;GTF2I:-0.275986361695;ZIC1..3:-0.282824706892;MAZ:-0.291544321364;RFX1:-0.301581038722;AIRE:-0.303345482448;STAT1,3:-0.303458136666;PAX2:-0.31029802182;TBP:-0.316739880439;HLF:-0.354253095174;TFAP2B:-0.364616441152;RREB1:-0.404912351996;PPARG:-0.407925550873;SNAI1..3:-0.411017159406;POU5F1:-0.417048535182;SRF:-0.419916801046;ZNF423:-0.428131581393;VSX1,2:-0.435723428906;HOXA9_MEIS1:-0.438363539053;ELK1,4_GABP{A,B1}:-0.439829571499;MZF1:-0.440120960154;ATF2:-0.440488193955;ZNF384:-0.460145949809;OCT4_SOX2{dimer}:-0.468961294008;CREB1:-0.470092004731;TFCP2:-0.471210641311;PAX3,7:-0.47166343376;STAT5{A,B}:-0.47713710725;GTF2A1,2:-0.483712867184;IRF1,2:-0.491834865322;FOX{D1,D2}:-0.496491215049;RUNX1..3:-0.522824326304;HIF1A:-0.530191939402;ATF6:-0.532301501345;ESR1:-0.533048063547;BPTF:-0.537873435708;HMX1:-0.538576747823;CEBPA,B_DDIT3:-0.544009295598;ZBTB16:-0.576752539288;XBP1:-0.577371383903;EGR1..3:-0.581533725141;MAFB:-0.603490050265;EBF1:-0.610750933105;HSF1,2:-0.618758752902;GLI1..3:-0.64125045368;ZEB1:-0.648875735934;IRF7:-0.668442672161;NFIL3:-0.68996621098;PATZ1:-0.69048311574;TBX4,5:-0.699717320544;JUN:-0.700259027909;RXRA_VDR{dimer}:-0.715600225299;FOXO1,3,4:-0.716240847865;POU2F1..3:-0.734787083228;ATF5_CREB3:-0.736455332021;EP300:-0.740081777831;ESRRA:-0.749257189269;CDX1,2,4:-0.755215766781;BREu{core}:-0.755267492442;NKX2-1,4:-0.758738640856;FOXP3:-0.765758552177;ALX4:-0.770340051484;SREBF1,2:-0.784208349557;ATF4:-0.80264619915;HOX{A4,D4}:-0.836935955044;NKX3-1:-0.837252433883;TOPORS:-0.87594738114;RFX2..5_RFXANK_RFXAP:-0.876230522963;PDX1:-0.889818188675;FOX{F1,F2,J1}:-0.893418346366;MYFfamily:-0.896296844606;NR1H4:-0.942960813548;NR6A1:-1.00990986834;NKX6-1,2:-1.01361372026;HOX{A6,A7,B6,B7}:-1.26977998967
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11266-116G6;search_select_hide=table117:FF:11266-116G6
}}
}}

Latest revision as of 16:29, 3 June 2020

Name:Endothelial Cells - Thoracic, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11926
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueinternal thoracic artery
dev stage34 years old adult
sexfemale
age34
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1696
catalog numberCA308-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005486
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11926 CAGE DRX008229 DRR009101
Accession ID Hg19

Library idBAMCTSS
CNhs11926 DRZ000526 DRZ001911
Accession ID Hg38

Library idBAMCTSS
CNhs11926 DRZ011876 DRZ013261
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005486
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.TGACCA sRNA-Seq DRX037091 DRR041457
Accession ID Hg19

Library idBAMCTSS
SRhi10007.TGACCA DRZ007099


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.129
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.276
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.074
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.634
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.145
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.38
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.224
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.34
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.268
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.329
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.634
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11926

Jaspar motifP-value
MA0002.20.0806
MA0003.10.552
MA0004.10.94
MA0006.10.172
MA0007.10.0636
MA0009.10.409
MA0014.10.484
MA0017.10.447
MA0018.23.33818e-8
MA0019.10.187
MA0024.10.0838
MA0025.10.193
MA0027.10.793
MA0028.10.797
MA0029.10.438
MA0030.10.0382
MA0031.10.321
MA0035.20.0113
MA0038.10.55
MA0039.20.792
MA0040.10.732
MA0041.10.294
MA0042.10.64
MA0043.12.90084e-7
MA0046.10.699
MA0047.20.391
MA0048.10.057
MA0050.10.0117
MA0051.10.575
MA0052.10.2
MA0055.10.00181
MA0057.10.429
MA0058.10.758
MA0059.10.13
MA0060.10.958
MA0061.10.261
MA0062.20.422
MA0065.20.399
MA0066.10.509
MA0067.10.0234
MA0068.10.319
MA0069.10.00607
MA0070.10.63
MA0071.10.269
MA0072.10.471
MA0073.10.44
MA0074.10.412
MA0076.10.0989
MA0077.14.75518e-5
MA0078.10.022
MA0079.20.453
MA0080.20.00243
MA0081.10.235
MA0083.10.0929
MA0084.10.475
MA0087.10.0982
MA0088.10.0201
MA0090.10.491
MA0091.10.874
MA0092.10.381
MA0093.10.917
MA0099.21.39082e-5
MA0100.10.805
MA0101.10.626
MA0102.21.79076e-4
MA0103.10.0274
MA0104.20.597
MA0105.10.29
MA0106.14.43836e-4
MA0107.10.878
MA0108.20.00575
MA0111.10.125
MA0112.20.988
MA0113.10.54
MA0114.10.963
MA0115.10.607
MA0116.10.372
MA0117.10.443
MA0119.10.00765
MA0122.10.193
MA0124.10.313
MA0125.10.776
MA0131.10.335
MA0135.10.151
MA0136.10.00875
MA0137.20.857
MA0138.20.6
MA0139.10.0695
MA0140.10.0106
MA0141.10.131
MA0142.10.748
MA0143.10.411
MA0144.10.162
MA0145.10.487
MA0146.10.816
MA0147.10.192
MA0148.10.116
MA0149.10.0339
MA0150.10.188
MA0152.10.999
MA0153.10.523
MA0154.10.414
MA0155.10.321
MA0156.10.00433
MA0157.10.621
MA0159.10.31
MA0160.10.995
MA0162.10.0546
MA0163.10.0449
MA0164.10.699
MA0258.10.87
MA0259.10.977



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11926

Novel motifP-value
10.0344
100.837
1000.148
1010.179
1020.825
1030.224
1040.74
1050.556
1060.704
1070.118
1080.879
1090.0772
110.125
1100.00124
1110.0448
1120.49
1130.672
1140.209
1150.911
1160.282
1170.446
1180.0459
1190.773
120.727
1200.0122
1210.285
1220.527
1230.145
1240.62
1250.949
1260.839
1270.581
1280.422
1290.211
130.341
1300.821
1310.287
1320.314
1330.877
1340.748
1350.414
1360.191
1370.503
1380.699
1390.831
140.135
1400.862
1410.0392
1420.0617
1430.521
1440.298
1450.285
1460.925
1470.387
1480.321
1490.0536
150.652
1500.588
1510.78
1520.0744
1530.273
1540.465
1550.31
1560.187
1570.141
1580.231
1590.29
160.946
1600.0851
1610.496
1620.258
1630.859
1640.225
1650.968
1660.346
1670.463
1680.242
1690.0165
170.381
180.839
190.197
20.922
200.154
210.779
220.651
230.211
240.221
251
260.574
270.556
280.38
290.783
30.76
300.469
310.694
320.422
330.129
340.167
350.427
360.0189
370.175
380.0907
390.237
40.834
400.0149
410.00484
420.202
430.959
440.816
450.863
460.319
470.193
480.144
490.91
50.648
500.947
510.551
520.296
530.753
540.933
550.805
560.676
570.185
580.601
590.358
60.59
600.514
610.654
620.574
630.769
640.916
650.757
660.0625
670.441
680.195
690.938
70.192
700.91
710.458
720.678
730.0117
740.955
750.113
760.563
770.191
780.0916
790.699
80.00713
800.355
810.576
820.64
830.813
840.308
850.746
860.448
870.267
880.856
890.95
90.432
900.476
910.596
920.36
930.769
940.966
950.073
960.173
970.344
980.329
990.00976



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11926


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)
0002545 (thoracic aorta endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0005800 (segment of aorta)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001515 (thoracic aorta)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)
0000051 (human thoracic endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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