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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005291,UBERON:0003509,UBERON:0004573,UBERON:0000487,UBERON:0005800,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0001515,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
|DRA_sample_Accession=CAGE@SAMD00005486
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:1000413,CL:0002544,CL:0000222,CL:0002545,CL:0002546
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005486
|accession_numbers=CAGE;DRX008229;DRR009101;DRZ000526;DRZ001911;DRZ011876;DRZ013261
|accession_numbers_RNASeq=sRNA-Seq;DRX037091;DRR041457;DRZ007099
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0004573,UBERON:0000487,UBERON:0005800,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001515,UBERON:0001917,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0000915,UBERON:0004572,UBERON:0004537,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413,CL:0002544,CL:0002545
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000048,FF:0000001,FF:0000051
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.26!237.88!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.12!129.42!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.99!97.80!ERG;;chr12:96588368..96588394,+!p3@ELK3!1.65!113.98!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.59!42.65!TCF4;;chr8:55370487..55370503,+!p1@SOX17!1.57!36.03!SOX17;;chr7:15726243..15726293,-!p2@MEOX2!1.55!34.19!MEOX2;;chr17:6926362..6926377,+!p1@BCL6B!1.54!33.46!BCL6B;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.39!23.53!ZBED1;;chr1:6479968..6479986,-!p1@HES2!1.34!20.96!HES2;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.49!MEOX2;;chr7:115670804..115670825,-!p1@TFEC!1.20!14.71!TFEC;;chr18:22932080..22932170,-!p1@ZNF521!1.19!60.66!ZNF521;;chr19:13213511..13213545,-!p2@LYL1!1.19!15.81!LYL1;;chr17:46682321..46682362,-!p1@HOXB6!1.18!13.97!HOXB6;;chr6:34204921..34204939,+!p3@HMGA1!1.17!409.94!HMGA1;;chr1:214161272..214161322,+!p1@PROX1!1.17!19.49!PROX1;;chr1:47695003..47695042,-!p2@TAL1!1.13!12.50!TAL1;;chr10:94449703..94449718,+!p1@HHEX!1.12!47.43!HHEX;;chr2:177053386..177053402,+!p1@HOXD1!1.12!12.13!HOXD1;;chr15:83953397..83953425,-!p1@BNC1!1.07!12.50!BNC1;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.29!BNC2;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.93!HOXD8;;chr3:128206762..128206781,-!p2@GATA2!1.03!61.03!GATA2;;chr3:169381420..169381535,-!p1@MECOM!1.02!11.03!MECOM;;chr1:200008734..200008765,+!p2@NR5A2!1.02!9.56!NR5A2;;chr3:168864315..168864339,-!p2@MECOM!0.98!14.34!MECOM;;chr15:96874927..96874938,+!p8@NR2F2!0.94!16.91!NR2F2;;chr4:146403912..146403972,+!p5@SMAD1!0.94!9.93!SMAD1;;chr10:31288370..31288393,-!p3@ZNF438!0.94!7.72!ZNF438;;chr19:13213399..13213414,-!p6@LYL1!0.92!7.35!LYL1;;chr9:124991204..124991246,-!p1@LHX6!0.92!7.35!LHX6;;chr7:15726220..15726236,-!p4@MEOX2!0.90!6.99!MEOX2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!9.93!HMGA2;;chr5:88178983..88179012,-!p1@MEF2C!0.88!53.31!MEF2C;;chr4:146402843..146402864,+!p3@SMAD1!0.88!13.60!SMAD1;;chr15:96874012..96874042,+!p2@NR2F2!0.87!61.40!NR2F2;;chr17:46688334..46688385,-!p1@HOXB7!0.87!9.56!HOXB7;;chr17:41622925..41622976,-!p3@ETV4!0.86!9.56!ETV4;;chr18:53068982..53068993,-!p20@TCF4!0.86!6.25!TCF4;;chr6:21597765..21597779,+!p2@SOX4!0.85!52.21!SOX4;;chr20:50721803..50721857,-!p2@ZFP64!0.84!9.56!ZFP64;;chr19:53496768..53496799,-!p1@ZNF702P!0.83!9.19!ZNF702P;;chr9:14083467..14083483,-!p4@NFIB!0.82!14.71!NFIB;;chr9:14082760..14082775,-!p6@NFIB!0.82!9.56!NFIB;;chr19:13213662..13213686,-!p1@LYL1!0.82!8.46!LYL1;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.51!HOXB8;;chr5:71803177..71803255,-!p1@ZNF366!0.81!5.51!ZNF366;;chr7:27196267..27196311,-!p1@HOXA7!0.81!5.51!HOXA7;;chr9:14314131..14314147,-!p2@NFIB!0.80!31.99!NFIB;;chr15:96873984..96873999,+!p3@NR2F2!0.79!41.18!NR2F2;;chr15:96873921..96873946,+!p1@NR2F2!0.78!153.68!NR2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.77!9.93!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.90!HMGA2;;chr3:168865194..168865245,-!p3@MECOM!0.76!6.25!MECOM;;chr1:158979792..158979814,+!p2@IFI16!0.75!48.90!IFI16;;chr20:50159198..50159299,-!p1@NFATC2!0.75!6.99!NFATC2;;chr9:14314566..14314618,-!p1@NFIB!0.73!59.19!NFIB;;chr18:53177984..53178004,-!p17@TCF4!0.73!4.41!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.73!4.41!LYL1;;chr5:92918919..92918942,+!p1@NR2F1!0.71!20.59!NR2F1;;chr11:128563948..128564003,+!p1@FLI1!0.70!54.78!FLI1;;chr10:31288398..31288455,-!p2@ZNF438!0.70!4.78!ZNF438;;chr12:80084018..80084035,-!p17@PAWR!0.70!4.04!PAWR;;chr2:237077022..237077038,-!p1@GBX2!0.70!4.04!GBX2;;chr3:21792682..21792720,-!p1@ZNF385D!0.70!4.04!ZNF385D;;chr6:130339710..130339745,+!p1@L3MBTL3!0.69!34.93!L3MBTL3;;chr15:96876966..96877017,+!p12@NR2F2!0.69!5.88!NR2F2;;chr10:94449675..94449694,+!p2@HHEX!0.67!11.03!HHEX;;chr12:66218255..66218304,+!p3@HMGA2!0.67!11.03!HMGA2;;chr8:106330656..106330684,+!p1@ZFPM2!0.67!10.66!ZFPM2;;chr15:96874145..96874166,+!p7@NR2F2!0.67!7.72!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!0.67!3.68!HOXB4;;chr17:46691732..46691766,-!p4@HOXB8!0.67!3.68!HOXB8;;chr7:27169801..27169844,-!p2@HOXA4!0.67!3.68!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.67!3.68!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.67!3.68!SOX17;;chr1:61869752..61869782,+!p13@NFIA!0.67!3.68!NFIA;;chr12:66218836..66218888,+!p1@HMGA2!0.66!38.97!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!0.66!5.15!HOXB7;;chr3:178789522..178789564,-!p2@ZMAT3!0.65!29.78!ZMAT3;;chr18:53257001..53257015,-!p5@TCF4!0.64!6.25!TCF4;;chr2:46524537..46524553,+!p1@EPAS1!0.63!388.62!EPAS1;;chr12:3069037..3069119,+!p2@TEAD4!0.63!12.87!TEAD4;;chr15:96874244..96874259,+!p5@NR2F2!0.63!8.82!NR2F2;;chr1:205601064..205601087,-!p4@ELK4!0.63!6.99!ELK4;;chr13:37494365..37494381,-!p1@SMAD9!0.63!6.25!SMAD9;;chr12:66218378..66218401,+!p6@HMGA2!0.63!5.51!HMGA2;;chr11:65429891..65429915,-!p7@RELA!0.63!3.31!RELA;;chr18:53068893..53068902,-!p28@TCF4!0.63!3.31!TCF4;;chr18:53068940..53068951,-!p21@TCF4!0.63!3.31!TCF4;;chr7:139741594..139741615,-!p5@PARP12!0.63!3.31!PARP12;;chr7:15726176..15726191,-!p3@MEOX2!0.63!3.31!MEOX2;;chr4:146402827..146402839,+!p1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002544;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002545;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000413;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0002546,CL:0000222
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Thoracic%252c%2520donor1.CNhs11926.11266-116G6.hg38.nobarcode.ctss.bed.gz
|id=FF:11266-116G6
|id=FF:11266-116G6
|is_a=EFO:0002091;;FF:0000002;;FF:0000051;;FF:0000210
|is_a=EFO:0002091;;FF:0000051
|is_obsolete=
|library_id=CNhs11926
|library_id_phase_based=2:CNhs11926
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11266
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.TGACCA.11266
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11266
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.TGACCA.11266
|name=Endothelial Cells - Thoracic, donor1
|name=Endothelial Cells - Thoracic, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 65:
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|profile_cagescan=,,,
|profile_hcage=CNhs11926,LSID842,release011,COMPLETED
|profile_hcage=CNhs11926,LSID842,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=116
|rna_box=116
|rna_catalog_number=CA308-R10a
|rna_catalog_number=CA308-R10a
Line 56: Line 82:
|rna_tube_id=116G6
|rna_tube_id=116G6
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10007.TGACCA
|sample_age=34
|sample_age=34
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 97:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89828188071495e-245!GO:0043226;organelle;1.06430201451838e-195!GO:0043229;intracellular organelle;2.85462658687395e-195!GO:0043231;intracellular membrane-bound organelle;7.35040426119182e-190!GO:0043227;membrane-bound organelle;1.1801205188494e-189!GO:0005737;cytoplasm;2.58503457331122e-188!GO:0044422;organelle part;9.87963119967073e-152!GO:0044446;intracellular organelle part;3.52245195501119e-150!GO:0044444;cytoplasmic part;1.47629017015426e-136!GO:0032991;macromolecular complex;3.47536883854607e-107!GO:0044237;cellular metabolic process;4.48131509886531e-90!GO:0030529;ribonucleoprotein complex;9.84893849887603e-90!GO:0044238;primary metabolic process;1.23502698541024e-89!GO:0043170;macromolecule metabolic process;1.33023931580807e-83!GO:0005515;protein binding;1.31704451797636e-79!GO:0043233;organelle lumen;2.27756868123834e-75!GO:0031974;membrane-enclosed lumen;2.27756868123834e-75!GO:0044428;nuclear part;3.72800520939369e-75!GO:0005634;nucleus;4.0886729127389e-75!GO:0003723;RNA binding;4.73207672286613e-74!GO:0005739;mitochondrion;9.59588172128381e-70!GO:0019538;protein metabolic process;2.41222644936142e-56!GO:0043234;protein complex;2.4383860639594e-54!GO:0006396;RNA processing;1.60730648306448e-53!GO:0031090;organelle membrane;1.36198804062737e-52!GO:0005840;ribosome;7.32638577017115e-52!GO:0006412;translation;2.89021425407084e-51!GO:0044267;cellular protein metabolic process;4.79709500329622e-50!GO:0044260;cellular macromolecule metabolic process;1.19192969823682e-49!GO:0016043;cellular component organization and biogenesis;1.12723345370943e-48!GO:0044429;mitochondrial part;3.05515645311848e-48!GO:0031981;nuclear lumen;4.44412894080704e-46!GO:0003735;structural constituent of ribosome;2.71859448683404e-45!GO:0043283;biopolymer metabolic process;3.30527205381756e-45!GO:0031967;organelle envelope;1.27340936499398e-44!GO:0031975;envelope;3.0858803491098e-44!GO:0005829;cytosol;3.46757438734459e-43!GO:0009058;biosynthetic process;1.07451205620958e-40!GO:0015031;protein transport;2.94365131077601e-40!GO:0044249;cellular biosynthetic process;6.0127912075544e-40!GO:0033036;macromolecule localization;1.02345951446224e-39!GO:0033279;ribosomal subunit;1.47135773584213e-39!GO:0043228;non-membrane-bound organelle;2.21014620116403e-39!GO:0043232;intracellular non-membrane-bound organelle;2.21014620116403e-39!GO:0016071;mRNA metabolic process;3.23370497328622e-39!GO:0009059;macromolecule biosynthetic process;5.67780636620365e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.55122862619039e-38!GO:0008380;RNA splicing;4.90654426103019e-38!GO:0010467;gene expression;8.53202359392257e-38!GO:0045184;establishment of protein localization;9.5826224336567e-37!GO:0006996;organelle organization and biogenesis;2.12106669844645e-36!GO:0008104;protein localization;4.16349394544918e-36!GO:0006397;mRNA processing;2.09996201215797e-35!GO:0046907;intracellular transport;6.38573856611799e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.71576686119714e-33!GO:0065003;macromolecular complex assembly;1.26756006293768e-32!GO:0005740;mitochondrial envelope;1.83042494973513e-32!GO:0031966;mitochondrial membrane;1.71033827371635e-30!GO:0006259;DNA metabolic process;2.02550049516901e-30!GO:0022607;cellular component assembly;3.61299265769024e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.00838554506541e-28!GO:0019866;organelle inner membrane;4.35524709544445e-28!GO:0000166;nucleotide binding;5.11914090441468e-28!GO:0006886;intracellular protein transport;8.31325073102617e-28!GO:0005654;nucleoplasm;1.31665031109395e-27!GO:0005681;spliceosome;2.00554708710598e-27!GO:0005743;mitochondrial inner membrane;2.21138762090711e-26!GO:0007049;cell cycle;2.25797594671888e-26!GO:0044445;cytosolic part;4.44899049733042e-24!GO:0051649;establishment of cellular localization;1.91753367658991e-23!GO:0051641;cellular localization;3.31450191674694e-23!GO:0016462;pyrophosphatase activity;9.6290960112715e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.20753407452299e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.79844505939442e-22!GO:0017111;nucleoside-triphosphatase activity;2.83127130609789e-22!GO:0006119;oxidative phosphorylation;6.64134239347721e-22!GO:0044451;nucleoplasm part;8.12991325220499e-22!GO:0012505;endomembrane system;2.74188514176281e-21!GO:0015934;large ribosomal subunit;6.78277566732659e-21!GO:0044455;mitochondrial membrane part;8.29989059535876e-21!GO:0006457;protein folding;8.40263574180998e-21!GO:0005730;nucleolus;3.13385162798593e-20!GO:0022402;cell cycle process;3.67598358551856e-20!GO:0017076;purine nucleotide binding;6.66628971942557e-20!GO:0032553;ribonucleotide binding;9.56198838912113e-20!GO:0032555;purine ribonucleotide binding;9.56198838912113e-20!GO:0015935;small ribosomal subunit;1.25553041110986e-19!GO:0031980;mitochondrial lumen;1.82260846767497e-19!GO:0005759;mitochondrial matrix;1.82260846767497e-19!GO:0003676;nucleic acid binding;2.24359888459313e-19!GO:0000278;mitotic cell cycle;2.49495045981382e-19!GO:0016874;ligase activity;4.56161372985992e-19!GO:0022618;protein-RNA complex assembly;4.88359142716582e-18!GO:0005783;endoplasmic reticulum;9.38283144521691e-18!GO:0006974;response to DNA damage stimulus;9.77335569623529e-18!GO:0006512;ubiquitin cycle;1.83480069092554e-17!GO:0044265;cellular macromolecule catabolic process;3.04864292236796e-17!GO:0000502;proteasome complex (sensu Eukaryota);5.65541259846181e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.82053474500963e-16!GO:0019941;modification-dependent protein catabolic process;2.88456116469734e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.88456116469734e-16!GO:0043285;biopolymer catabolic process;3.22188577240042e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.15864700845808e-16!GO:0005746;mitochondrial respiratory chain;4.15864700845808e-16!GO:0044257;cellular protein catabolic process;4.75375105638363e-16!GO:0043412;biopolymer modification;5.2670019114551e-16!GO:0005524;ATP binding;7.31580285179903e-16!GO:0032559;adenyl ribonucleotide binding;7.84060027120779e-16!GO:0030554;adenyl nucleotide binding;7.87904405816588e-16!GO:0042254;ribosome biogenesis and assembly;1.06836529565504e-15!GO:0009057;macromolecule catabolic process;1.33231771962356e-15!GO:0005694;chromosome;1.38326780060117e-15!GO:0008135;translation factor activity, nucleic acid binding;1.4814993060842e-15!GO:0008134;transcription factor binding;1.64570237688953e-15!GO:0005794;Golgi apparatus;1.83707022450751e-15!GO:0051186;cofactor metabolic process;2.46661172498648e-15!GO:0006605;protein targeting;2.84086635112798e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.95763709872797e-15!GO:0048770;pigment granule;3.6625393777905e-15!GO:0042470;melanosome;3.6625393777905e-15!GO:0005761;mitochondrial ribosome;5.47165064776309e-15!GO:0000313;organellar ribosome;5.47165064776309e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;6.62684423843907e-15!GO:0000375;RNA splicing, via transesterification reactions;6.62684423843907e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.62684423843907e-15!GO:0000087;M phase of mitotic cell cycle;7.89443796996636e-15!GO:0006281;DNA repair;1.22747353877844e-14!GO:0007067;mitosis;1.39746602109519e-14!GO:0044432;endoplasmic reticulum part;1.41272872335343e-14!GO:0016192;vesicle-mediated transport;1.50339192003385e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.6425964026834e-14!GO:0003954;NADH dehydrogenase activity;1.6425964026834e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.6425964026834e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.84525032106085e-14!GO:0016070;RNA metabolic process;2.023163279814e-14!GO:0044248;cellular catabolic process;2.10402338692002e-14!GO:0030163;protein catabolic process;2.39747501040657e-14!GO:0051301;cell division;2.6098349797605e-14!GO:0006464;protein modification process;3.26667791772993e-14!GO:0044427;chromosomal part;5.34619598912387e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.3625968470703e-14!GO:0051082;unfolded protein binding;1.25375797100348e-13!GO:0022403;cell cycle phase;1.9420454503327e-13!GO:0048193;Golgi vesicle transport;2.29283757220326e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.47754774327145e-13!GO:0005635;nuclear envelope;4.93394626620267e-13!GO:0042623;ATPase activity, coupled;5.03777009900587e-13!GO:0016887;ATPase activity;5.10740773617366e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.36356342925525e-13!GO:0042773;ATP synthesis coupled electron transport;6.36356342925525e-13!GO:0006260;DNA replication;9.74447711299793e-13!GO:0009719;response to endogenous stimulus;1.2785881011853e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.42251631743888e-12!GO:0045271;respiratory chain complex I;1.42251631743888e-12!GO:0005747;mitochondrial respiratory chain complex I;1.42251631743888e-12!GO:0051276;chromosome organization and biogenesis;2.14790557739046e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.05054631489342e-12!GO:0043687;post-translational protein modification;3.82585731592513e-12!GO:0016604;nuclear body;4.95598315983434e-12!GO:0003743;translation initiation factor activity;5.76727471466093e-12!GO:0044453;nuclear membrane part;6.85881271574403e-12!GO:0051726;regulation of cell cycle;7.26862355122438e-12!GO:0031965;nuclear membrane;7.66005684935727e-12!GO:0012501;programmed cell death;9.55619744816924e-12!GO:0006915;apoptosis;1.03957403122736e-11!GO:0000074;regulation of progression through cell cycle;1.08523090405807e-11!GO:0006732;coenzyme metabolic process;1.12057572299099e-11!GO:0009259;ribonucleotide metabolic process;2.59918904808879e-11!GO:0006413;translational initiation;2.91229563995171e-11!GO:0006163;purine nucleotide metabolic process;3.89755352945205e-11!GO:0008639;small protein conjugating enzyme activity;3.9868432849922e-11!GO:0006399;tRNA metabolic process;4.42603597259293e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.08796046920049e-11!GO:0000279;M phase;7.74346773005406e-11!GO:0004842;ubiquitin-protein ligase activity;8.38216581430496e-11!GO:0009055;electron carrier activity;9.6242547915001e-11!GO:0003712;transcription cofactor activity;1.2361444679389e-10!GO:0004386;helicase activity;1.42914746490106e-10!GO:0009150;purine ribonucleotide metabolic process;1.50994621275432e-10!GO:0019787;small conjugating protein ligase activity;1.6973585162058e-10!GO:0006364;rRNA processing;1.87305568219764e-10!GO:0006446;regulation of translational initiation;2.0905798995103e-10!GO:0005789;endoplasmic reticulum membrane;2.18453264207861e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.32243165094761e-10!GO:0005793;ER-Golgi intermediate compartment;2.45240825934032e-10!GO:0008219;cell death;3.00478009912972e-10!GO:0016265;death;3.00478009912972e-10!GO:0008026;ATP-dependent helicase activity;3.50859063008413e-10!GO:0016072;rRNA metabolic process;4.30231394851908e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.02583526152278e-10!GO:0006164;purine nucleotide biosynthetic process;5.16494149823489e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.3036203244915e-10!GO:0006461;protein complex assembly;5.51083814971821e-10!GO:0006323;DNA packaging;6.58121333175378e-10!GO:0006913;nucleocytoplasmic transport;7.22762591037857e-10!GO:0009199;ribonucleoside triphosphate metabolic process;7.57459407484333e-10!GO:0008565;protein transporter activity;7.87760329024031e-10!GO:0009260;ribonucleotide biosynthetic process;9.78295819009716e-10!GO:0009141;nucleoside triphosphate metabolic process;1.04515735857357e-09!GO:0005643;nuclear pore;1.14099105886566e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.53197275286721e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.53197275286721e-09!GO:0051169;nuclear transport;1.96814532087426e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.97932703618472e-09!GO:0016607;nuclear speck;1.97932703618472e-09!GO:0016881;acid-amino acid ligase activity;4.00675757861271e-09!GO:0065002;intracellular protein transport across a membrane;4.4773159112194e-09!GO:0000785;chromatin;4.50253229099117e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.33909672659589e-09!GO:0030532;small nuclear ribonucleoprotein complex;7.73341366842108e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.13915337217865e-09!GO:0015630;microtubule cytoskeleton;1.08925102235506e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.37457869758464e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.37457869758464e-08!GO:0046034;ATP metabolic process;1.51317224453478e-08!GO:0046930;pore complex;1.57920182768888e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.89399206442584e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.89399206442584e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.89399206442584e-08!GO:0009056;catabolic process;1.9720284644097e-08!GO:0050657;nucleic acid transport;1.9858941180635e-08!GO:0051236;establishment of RNA localization;1.9858941180635e-08!GO:0050658;RNA transport;1.9858941180635e-08!GO:0015986;ATP synthesis coupled proton transport;2.10708451295399e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.10708451295399e-08!GO:0006333;chromatin assembly or disassembly;2.32689903518421e-08!GO:0006403;RNA localization;2.5103153576998e-08!GO:0050794;regulation of cellular process;2.69300330254907e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.70258725365663e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.70258725365663e-08!GO:0043038;amino acid activation;2.93453065421961e-08!GO:0006418;tRNA aminoacylation for protein translation;2.93453065421961e-08!GO:0043039;tRNA aminoacylation;2.93453065421961e-08!GO:0009060;aerobic respiration;3.19148101920924e-08!GO:0006793;phosphorus metabolic process;4.33459101711638e-08!GO:0006796;phosphate metabolic process;4.33459101711638e-08!GO:0006888;ER to Golgi vesicle-mediated transport;4.63475695215125e-08!GO:0065004;protein-DNA complex assembly;4.90672800223618e-08!GO:0051246;regulation of protein metabolic process;5.02508942973575e-08!GO:0048523;negative regulation of cellular process;5.39595091520226e-08!GO:0051188;cofactor biosynthetic process;8.82640143909894e-08!GO:0007005;mitochondrion organization and biogenesis;1.13025512463126e-07!GO:0045333;cellular respiration;1.18586359118449e-07!GO:0017038;protein import;1.42423680935977e-07!GO:0009117;nucleotide metabolic process;1.5005065402749e-07!GO:0016787;hydrolase activity;1.88846139118791e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.95207412372667e-07!GO:0019829;cation-transporting ATPase activity;1.97147074293063e-07!GO:0006754;ATP biosynthetic process;2.47646495136528e-07!GO:0006753;nucleoside phosphate metabolic process;2.47646495136528e-07!GO:0016779;nucleotidyltransferase activity;3.04820274051366e-07!GO:0003924;GTPase activity;3.12062741566802e-07!GO:0042981;regulation of apoptosis;3.27035843873761e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.33269024737289e-07!GO:0032446;protein modification by small protein conjugation;3.33269024737289e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.49722610295445e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.61037681986629e-07!GO:0043067;regulation of programmed cell death;4.3041066985029e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.41378714834438e-07!GO:0016740;transferase activity;4.41378714834438e-07!GO:0016310;phosphorylation;4.46193619488417e-07!GO:0043069;negative regulation of programmed cell death;4.75488293305381e-07!GO:0005768;endosome;4.82714453895582e-07!GO:0016567;protein ubiquitination;4.97038407572436e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.2212443526357e-07!GO:0044431;Golgi apparatus part;5.73860613215582e-07!GO:0006916;anti-apoptosis;6.06121380860243e-07!GO:0006366;transcription from RNA polymerase II promoter;6.11364552256925e-07!GO:0005525;GTP binding;7.09459733333933e-07!GO:0051028;mRNA transport;7.4557396895591e-07!GO:0043066;negative regulation of apoptosis;7.54578091155892e-07!GO:0006099;tricarboxylic acid cycle;7.59857753300079e-07!GO:0046356;acetyl-CoA catabolic process;7.59857753300079e-07!GO:0005839;proteasome core complex (sensu Eukaryota);8.03757845675574e-07!GO:0031988;membrane-bound vesicle;8.96014532860823e-07!GO:0003697;single-stranded DNA binding;9.61014727473816e-07!GO:0005813;centrosome;9.65368420679741e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.87082179391355e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.0544927415822e-06!GO:0000245;spliceosome assembly;1.06653952102535e-06!GO:0045259;proton-transporting ATP synthase complex;1.30626353334207e-06!GO:0006084;acetyl-CoA metabolic process;1.49195926094003e-06!GO:0005819;spindle;1.63125213149384e-06!GO:0003724;RNA helicase activity;1.64677034477402e-06!GO:0048519;negative regulation of biological process;1.73336600496688e-06!GO:0051187;cofactor catabolic process;1.94493358558792e-06!GO:0030120;vesicle coat;2.11794116562903e-06!GO:0030662;coated vesicle membrane;2.11794116562903e-06!GO:0009108;coenzyme biosynthetic process;2.16247317996001e-06!GO:0005815;microtubule organizing center;2.71898507381853e-06!GO:0031252;leading edge;2.7621337967554e-06!GO:0006334;nucleosome assembly;3.11365633441797e-06!GO:0005788;endoplasmic reticulum lumen;3.39199903681344e-06!GO:0000151;ubiquitin ligase complex;3.52061716485713e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.87525356277601e-06!GO:0048475;coated membrane;4.01821217173699e-06!GO:0030117;membrane coat;4.01821217173699e-06!GO:0004298;threonine endopeptidase activity;4.2594437682255e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.66193937769797e-06!GO:0031497;chromatin assembly;4.99275046798357e-06!GO:0006752;group transfer coenzyme metabolic process;5.34440460745682e-06!GO:0005770;late endosome;5.42808444123573e-06!GO:0031968;organelle outer membrane;5.4786384543513e-06!GO:0043566;structure-specific DNA binding;5.57283539076805e-06!GO:0031982;vesicle;6.24942510231943e-06!GO:0019867;outer membrane;6.28571924085384e-06!GO:0006613;cotranslational protein targeting to membrane;6.34037479780344e-06!GO:0045786;negative regulation of progression through cell cycle;6.52438110592731e-06!GO:0044440;endosomal part;6.73675498444947e-06!GO:0010008;endosome membrane;6.73675498444947e-06!GO:0009109;coenzyme catabolic process;6.92904072362355e-06!GO:0005667;transcription factor complex;7.46166650957796e-06!GO:0016568;chromatin modification;7.49484102233927e-06!GO:0031410;cytoplasmic vesicle;8.05472378523874e-06!GO:0016853;isomerase activity;8.2739917980536e-06!GO:0003713;transcription coactivator activity;8.4617107126483e-06!GO:0000139;Golgi membrane;9.51826473679838e-06!GO:0007010;cytoskeleton organization and biogenesis;9.83483011406635e-06!GO:0030036;actin cytoskeleton organization and biogenesis;9.99883456862146e-06!GO:0016491;oxidoreductase activity;1.04795078057203e-05!GO:0045454;cell redox homeostasis;1.07850793417649e-05!GO:0019899;enzyme binding;1.18951395578513e-05!GO:0032561;guanyl ribonucleotide binding;1.22713752418526e-05!GO:0019001;guanyl nucleotide binding;1.22713752418526e-05!GO:0005762;mitochondrial large ribosomal subunit;1.23393726082302e-05!GO:0000315;organellar large ribosomal subunit;1.23393726082302e-05!GO:0005769;early endosome;1.28918076900531e-05!GO:0043623;cellular protein complex assembly;1.38926535904235e-05!GO:0051325;interphase;1.40222752832069e-05!GO:0007051;spindle organization and biogenesis;1.55756972321694e-05!GO:0051329;interphase of mitotic cell cycle;1.67650351150728e-05!GO:0003899;DNA-directed RNA polymerase activity;1.88101169358264e-05!GO:0005773;vacuole;1.88850347825746e-05!GO:0007243;protein kinase cascade;2.52215967361268e-05!GO:0005741;mitochondrial outer membrane;2.67618200145056e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.78314935086408e-05!GO:0051170;nuclear import;3.33399219313162e-05!GO:0000775;chromosome, pericentric region;3.39619838468731e-05!GO:0008654;phospholipid biosynthetic process;4.34552642389963e-05!GO:0016859;cis-trans isomerase activity;4.34552642389963e-05!GO:0030029;actin filament-based process;4.36268878033535e-05!GO:0016044;membrane organization and biogenesis;4.51754148469084e-05!GO:0006261;DNA-dependent DNA replication;4.56303414857331e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.69687352728189e-05!GO:0030867;rough endoplasmic reticulum membrane;4.9209263621923e-05!GO:0003714;transcription corepressor activity;5.79558957882209e-05!GO:0006612;protein targeting to membrane;5.90383767626999e-05!GO:0008186;RNA-dependent ATPase activity;6.16667096023283e-05!GO:0006606;protein import into nucleus;6.43169790889081e-05!GO:0050789;regulation of biological process;6.52159936555964e-05!GO:0044452;nucleolar part;7.11428944300928e-05!GO:0043021;ribonucleoprotein binding;8.13240822166187e-05!GO:0065009;regulation of a molecular function;8.179867942301e-05!GO:0000314;organellar small ribosomal subunit;8.71314306784293e-05!GO:0005763;mitochondrial small ribosomal subunit;8.71314306784293e-05!GO:0000323;lytic vacuole;0.000104594336750878!GO:0005764;lysosome;0.000104594336750878!GO:0051427;hormone receptor binding;0.000107622203660907!GO:0030880;RNA polymerase complex;0.000107622203660907!GO:0051087;chaperone binding;0.000120216023718182!GO:0009165;nucleotide biosynthetic process;0.00012150861220737!GO:0007264;small GTPase mediated signal transduction;0.000123924424872393!GO:0005798;Golgi-associated vesicle;0.000132470813272693!GO:0000075;cell cycle checkpoint;0.000135281082695706!GO:0006091;generation of precursor metabolites and energy;0.000136923793477459!GO:0006950;response to stress;0.000150370811017298!GO:0006383;transcription from RNA polymerase III promoter;0.000171292815403059!GO:0016563;transcription activator activity;0.000177263939482052!GO:0004004;ATP-dependent RNA helicase activity;0.000183012057417579!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000206627270641272!GO:0008047;enzyme activator activity;0.00022682629424394!GO:0035257;nuclear hormone receptor binding;0.000227310999006374!GO:0033116;ER-Golgi intermediate compartment membrane;0.000250559024460411!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000253909489126225!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000272121959583852!GO:0000428;DNA-directed RNA polymerase complex;0.000272121959583852!GO:0006626;protein targeting to mitochondrion;0.000290150983242676!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000298236327220635!GO:0015399;primary active transmembrane transporter activity;0.000298236327220635!GO:0042802;identical protein binding;0.000331286527144543!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000335788023778299!GO:0005048;signal sequence binding;0.000338846171456797!GO:0006839;mitochondrial transport;0.0003392796560749!GO:0008033;tRNA processing;0.000379884168866429!GO:0048471;perinuclear region of cytoplasm;0.00038148216999099!GO:0016363;nuclear matrix;0.000381737619696505!GO:0048522;positive regulation of cellular process;0.000410077128771313!GO:0006414;translational elongation;0.000412933280479129!GO:0005657;replication fork;0.000419794826365127!GO:0043681;protein import into mitochondrion;0.000421769830442844!GO:0008094;DNA-dependent ATPase activity;0.000421935809987514!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000498100978254972!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000500008680296044!GO:0051168;nuclear export;0.000501549335532581!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000524387904855578!GO:0005885;Arp2/3 protein complex;0.00053923842735249!GO:0008092;cytoskeletal protein binding;0.000585882473843065!GO:0003684;damaged DNA binding;0.000616724105332424!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000687921167562868!GO:0006302;double-strand break repair;0.000706737915935662!GO:0005905;coated pit;0.000710186603321127!GO:0003729;mRNA binding;0.000812056144638193!GO:0008632;apoptotic program;0.000818460971397751!GO:0015980;energy derivation by oxidation of organic compounds;0.000838223577112923!GO:0019843;rRNA binding;0.00094045130035176!GO:0051920;peroxiredoxin activity;0.00109894416923054!GO:0031072;heat shock protein binding;0.0011171897792885!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00114891422547316!GO:0000059;protein import into nucleus, docking;0.00117806359277443!GO:0007006;mitochondrial membrane organization and biogenesis;0.00118024830609428!GO:0005096;GTPase activator activity;0.00122600243309655!GO:0003678;DNA helicase activity;0.00122683094532578!GO:0003682;chromatin binding;0.00136054590651677!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00139888836768239!GO:0016564;transcription repressor activity;0.00148050112214348!GO:0048500;signal recognition particle;0.00151104083999267!GO:0000786;nucleosome;0.00162333487112992!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00162333487112992!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00162333487112992!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00162333487112992!GO:0046483;heterocycle metabolic process;0.00170413744443702!GO:0005684;U2-dependent spliceosome;0.00170986365432727!GO:0006818;hydrogen transport;0.00179630567546555!GO:0000776;kinetochore;0.00181792277423702!GO:0015992;proton transport;0.00185593808213522!GO:0007050;cell cycle arrest;0.00201422273997284!GO:0050790;regulation of catalytic activity;0.00210970982628698!GO:0008139;nuclear localization sequence binding;0.00225712013964449!GO:0046474;glycerophospholipid biosynthetic process;0.00230264606640489!GO:0046489;phosphoinositide biosynthetic process;0.00235972503494805!GO:0005874;microtubule;0.00258154141557629!GO:0008312;7S RNA binding;0.00259644083778832!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00262833100522582!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0026758648439821!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0026758648439821!GO:0043492;ATPase activity, coupled to movement of substances;0.00270466539713165!GO:0007052;mitotic spindle organization and biogenesis;0.00277809002653805!GO:0046467;membrane lipid biosynthetic process;0.00287617882149723!GO:0030133;transport vesicle;0.0028833318798035!GO:0007265;Ras protein signal transduction;0.00289090019446655!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.002957531697715!GO:0007088;regulation of mitosis;0.00314562445556713!GO:0030134;ER to Golgi transport vesicle;0.00316937213208676!GO:0030658;transport vesicle membrane;0.00319512980023627!GO:0051789;response to protein stimulus;0.00323333665371692!GO:0006986;response to unfolded protein;0.00323333665371692!GO:0035258;steroid hormone receptor binding;0.0033237696559453!GO:0000049;tRNA binding;0.00333008718677651!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00349925420673236!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00350709833704716!GO:0045047;protein targeting to ER;0.00350709833704716!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00383658153150345!GO:0065007;biological regulation;0.00383658153150345!GO:0016197;endosome transport;0.00389533112010808!GO:0006289;nucleotide-excision repair;0.00391396204364845!GO:0006897;endocytosis;0.00402779366647442!GO:0010324;membrane invagination;0.00402779366647442!GO:0006402;mRNA catabolic process;0.00403393363461555!GO:0017166;vinculin binding;0.00442664539425499!GO:0031324;negative regulation of cellular metabolic process;0.00454423692515871!GO:0000082;G1/S transition of mitotic cell cycle;0.00455751568640497!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00455751568640497!GO:0030521;androgen receptor signaling pathway;0.00461784245793563!GO:0030127;COPII vesicle coat;0.00469409447602107!GO:0012507;ER to Golgi transport vesicle membrane;0.00469409447602107!GO:0051252;regulation of RNA metabolic process;0.00469613308979654!GO:0015631;tubulin binding;0.00471808589704155!GO:0006401;RNA catabolic process;0.00475566528002431!GO:0009967;positive regulation of signal transduction;0.00477316385545741!GO:0005791;rough endoplasmic reticulum;0.00498303201973197!GO:0007017;microtubule-based process;0.00523738086832571!GO:0030659;cytoplasmic vesicle membrane;0.00561748456713338!GO:0005774;vacuolar membrane;0.00567327505386257!GO:0019222;regulation of metabolic process;0.0056993836959588!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0057167601279814!GO:0008250;oligosaccharyl transferase complex;0.00583041552292388!GO:0045045;secretory pathway;0.00600761235944126!GO:0007093;mitotic cell cycle checkpoint;0.00602874454406644!GO:0006310;DNA recombination;0.0060553975056784!GO:0033673;negative regulation of kinase activity;0.00607849314576656!GO:0006469;negative regulation of protein kinase activity;0.00607849314576656!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00615074412340707!GO:0048487;beta-tubulin binding;0.0062530145358402!GO:0044262;cellular carbohydrate metabolic process;0.00625978948357313!GO:0050662;coenzyme binding;0.00628967005669873!GO:0006497;protein amino acid lipidation;0.00631954396648843!GO:0030660;Golgi-associated vesicle membrane;0.00638405479042612!GO:0030041;actin filament polymerization;0.00673122857242794!GO:0015036;disulfide oxidoreductase activity;0.00685607802768997!GO:0030663;COPI coated vesicle membrane;0.00686680502904689!GO:0030126;COPI vesicle coat;0.00686680502904689!GO:0006595;polyamine metabolic process;0.00701575916121575!GO:0006352;transcription initiation;0.00714170375967438!GO:0016272;prefoldin complex;0.00714270359867524!GO:0043086;negative regulation of catalytic activity;0.00717966967074549!GO:0003711;transcription elongation regulator activity;0.00720175194045527!GO:0031901;early endosome membrane;0.00724385482078478!GO:0051348;negative regulation of transferase activity;0.00732589251520478!GO:0016126;sterol biosynthetic process;0.00745120792460623!GO:0051052;regulation of DNA metabolic process;0.00760942923833454!GO:0031124;mRNA 3'-end processing;0.00765221519030402!GO:0030027;lamellipodium;0.00765221519030402!GO:0003690;double-stranded DNA binding;0.00774323761390265!GO:0032508;DNA duplex unwinding;0.00781399362786098!GO:0032392;DNA geometric change;0.00781399362786098!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00787733972161787!GO:0031902;late endosome membrane;0.00797565436905494!GO:0006891;intra-Golgi vesicle-mediated transport;0.00799939651978901!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00804808541749048!GO:0001726;ruffle;0.0084520140482265!GO:0006509;membrane protein ectodomain proteolysis;0.00855955936157653!GO:0033619;membrane protein proteolysis;0.00855955936157653!GO:0007162;negative regulation of cell adhesion;0.00892455782937687!GO:0022890;inorganic cation transmembrane transporter activity;0.00899794599895481!GO:0004518;nuclease activity;0.00901483859070687!GO:0051540;metal cluster binding;0.00910604266947585!GO:0051536;iron-sulfur cluster binding;0.00910604266947585!GO:0000339;RNA cap binding;0.00949257625616214!GO:0004576;oligosaccharyl transferase activity;0.00952033299584707!GO:0009892;negative regulation of metabolic process;0.00977634976972202!GO:0004003;ATP-dependent DNA helicase activity;0.0101463048442213!GO:0048660;regulation of smooth muscle cell proliferation;0.0102318165095344!GO:0006417;regulation of translation;0.0102877085483675!GO:0003746;translation elongation factor activity;0.0105459801080129!GO:0016741;transferase activity, transferring one-carbon groups;0.0107620994037322!GO:0043022;ribosome binding;0.0107720946525696!GO:0018196;peptidyl-asparagine modification;0.0110089314637228!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0110089314637228!GO:0005832;chaperonin-containing T-complex;0.0111026538603171!GO:0030118;clathrin coat;0.0111026538603171!GO:0005083;small GTPase regulator activity;0.0111481608875567!GO:0006268;DNA unwinding during replication;0.0113220589204675!GO:0051539;4 iron, 4 sulfur cluster binding;0.011333528683545!GO:0006405;RNA export from nucleus;0.0114822651255516!GO:0031625;ubiquitin protein ligase binding;0.0115429722949468!GO:0007242;intracellular signaling cascade;0.0117655951219035!GO:0000209;protein polyubiquitination;0.0118146078879708!GO:0032984;macromolecular complex disassembly;0.0118786910012831!GO:0043488;regulation of mRNA stability;0.0118786910012831!GO:0043487;regulation of RNA stability;0.0118786910012831!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0119800542119906!GO:0044437;vacuolar part;0.011980863219512!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0120906472620925!GO:0051101;regulation of DNA binding;0.0122173272165707!GO:0007034;vacuolar transport;0.0125195588846098!GO:0008180;signalosome;0.0125204180236288!GO:0044433;cytoplasmic vesicle part;0.0126427349843884!GO:0005637;nuclear inner membrane;0.0126427349843884!GO:0030695;GTPase regulator activity;0.0126829749592942!GO:0047485;protein N-terminus binding;0.0127766751805079!GO:0006144;purine base metabolic process;0.0127766751805079!GO:0006695;cholesterol biosynthetic process;0.012794806775578!GO:0050681;androgen receptor binding;0.0129335202703691!GO:0008361;regulation of cell size;0.0129972016038097!GO:0000922;spindle pole;0.0131266523681516!GO:0009112;nucleobase metabolic process;0.0131266523681516!GO:0006650;glycerophospholipid metabolic process;0.0132468966272361!GO:0004177;aminopeptidase activity;0.0136005677717011!GO:0030384;phosphoinositide metabolic process;0.0136238496452244!GO:0009116;nucleoside metabolic process;0.0137525876873712!GO:0005869;dynactin complex;0.0137525876873712!GO:0022408;negative regulation of cell-cell adhesion;0.0137525876873712!GO:0007021;tubulin folding;0.0137525876873712!GO:0005765;lysosomal membrane;0.0140737731216209!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0141571712532108!GO:0016049;cell growth;0.0142458332662977!GO:0006378;mRNA polyadenylation;0.0142458332662977!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0143901342128187!GO:0008168;methyltransferase activity;0.0144010669794049!GO:0007266;Rho protein signal transduction;0.0144369498785547!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0149086758523069!GO:0015002;heme-copper terminal oxidase activity;0.0149086758523069!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0149086758523069!GO:0004129;cytochrome-c oxidase activity;0.0149086758523069!GO:0005758;mitochondrial intermembrane space;0.0150205356077466!GO:0004527;exonuclease activity;0.0150709108238783!GO:0008234;cysteine-type peptidase activity;0.0153470322643866!GO:0030137;COPI-coated vesicle;0.0156201859370595!GO:0006611;protein export from nucleus;0.0157361809516729!GO:0030132;clathrin coat of coated pit;0.0163267025864078!GO:0030176;integral to endoplasmic reticulum membrane;0.0167893430643242!GO:0043241;protein complex disassembly;0.0169908566837389!GO:0051287;NAD binding;0.0171029527198423!GO:0042158;lipoprotein biosynthetic process;0.017326157879495!GO:0042168;heme metabolic process;0.0178279261721311!GO:0022415;viral reproductive process;0.0178615563861494!GO:0022411;cellular component disassembly;0.0180065812397351!GO:0008022;protein C-terminus binding;0.0180664989003283!GO:0043284;biopolymer biosynthetic process;0.0180664989003283!GO:0006740;NADPH regeneration;0.0180953814212947!GO:0006098;pentose-phosphate shunt;0.0180953814212947!GO:0051098;regulation of binding;0.0180953814212947!GO:0000096;sulfur amino acid metabolic process;0.0186986266290792!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0187533088977862!GO:0043624;cellular protein complex disassembly;0.018800082052363!GO:0012506;vesicle membrane;0.0191292434791438!GO:0007059;chromosome segregation;0.0199877061901034!GO:0000287;magnesium ion binding;0.0200676681245188!GO:0003756;protein disulfide isomerase activity;0.0200676681245188!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0200676681245188!GO:0030032;lamellipodium biogenesis;0.0200676681245188!GO:0005876;spindle microtubule;0.0200878941475661!GO:0005669;transcription factor TFIID complex;0.0202129775834968!GO:0030833;regulation of actin filament polymerization;0.0202389714143461!GO:0006376;mRNA splice site selection;0.0208646077814038!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0208646077814038!GO:0006506;GPI anchor biosynthetic process;0.0208679978699423!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0210025283458191!GO:0016251;general RNA polymerase II transcription factor activity;0.0214398202602357!GO:0051338;regulation of transferase activity;0.0217496648887688!GO:0006778;porphyrin metabolic process;0.0217496648887688!GO:0033013;tetrapyrrole metabolic process;0.0217496648887688!GO:0032200;telomere organization and biogenesis;0.0218879912601343!GO:0000723;telomere maintenance;0.0218879912601343!GO:0006505;GPI anchor metabolic process;0.0220029802040991!GO:0007040;lysosome organization and biogenesis;0.0220387518469059!GO:0000910;cytokinesis;0.0220732774793601!GO:0008154;actin polymerization and/or depolymerization;0.0220732774793601!GO:0031123;RNA 3'-end processing;0.0221992576850485!GO:0006284;base-excision repair;0.0222269095126928!GO:0006220;pyrimidine nucleotide metabolic process;0.0228775103903675!GO:0004197;cysteine-type endopeptidase activity;0.0229203536031494!GO:0031529;ruffle organization and biogenesis;0.0235221960763308!GO:0051128;regulation of cellular component organization and biogenesis;0.023530605442944!GO:0006643;membrane lipid metabolic process;0.0238171245255573!GO:0007033;vacuole organization and biogenesis;0.0240352006594001!GO:0016301;kinase activity;0.0242371907534598!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0244513992515473!GO:0001953;negative regulation of cell-matrix adhesion;0.0244513992515473!GO:0006892;post-Golgi vesicle-mediated transport;0.0244513992515473!GO:0001952;regulation of cell-matrix adhesion;0.0249046530208985!GO:0008610;lipid biosynthetic process;0.0249046530208985!GO:0042770;DNA damage response, signal transduction;0.0251150508499494!GO:0009303;rRNA transcription;0.0253176388306995!GO:0006118;electron transport;0.0254402252906329!GO:0035267;NuA4 histone acetyltransferase complex;0.0254889230832888!GO:0007346;regulation of progression through mitotic cell cycle;0.025816198007799!GO:0004674;protein serine/threonine kinase activity;0.0262269511015302!GO:0035035;histone acetyltransferase binding;0.0264465314108341!GO:0022406;membrane docking;0.0264465314108341!GO:0048278;vesicle docking;0.0264465314108341!GO:0048659;smooth muscle cell proliferation;0.0265197536481126!GO:0042585;germinal vesicle;0.0265784893839193!GO:0030518;steroid hormone receptor signaling pathway;0.0267574156616822!GO:0005092;GDP-dissociation inhibitor activity;0.0268790408402772!GO:0008538;proteasome activator activity;0.0272381408351!GO:0048518;positive regulation of biological process;0.0272691571880811!GO:0009451;RNA modification;0.0272978849155591!GO:0030496;midbody;0.027444272018449!GO:0005099;Ras GTPase activator activity;0.0276026287479804!GO:0001558;regulation of cell growth;0.0277871807921991!GO:0009889;regulation of biosynthetic process;0.0283578396974563!GO:0043549;regulation of kinase activity;0.0283841511564937!GO:0031970;organelle envelope lumen;0.0290232396429146!GO:0043189;H4/H2A histone acetyltransferase complex;0.0291665038727041!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0292332249475718!GO:0031326;regulation of cellular biosynthetic process;0.0294217308645904!GO:0030119;AP-type membrane coat adaptor complex;0.0294645531229452!GO:0045941;positive regulation of transcription;0.0312522537101171!GO:0000152;nuclear ubiquitin ligase complex;0.0312736548503617!GO:0006082;organic acid metabolic process;0.0316499842447223!GO:0007041;lysosomal transport;0.0322698207178418!GO:0003779;actin binding;0.0322698207178418!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0322698207178418!GO:0016601;Rac protein signal transduction;0.0322698207178418!GO:0019752;carboxylic acid metabolic process;0.0333461301634673!GO:0048144;fibroblast proliferation;0.0334806994541949!GO:0048145;regulation of fibroblast proliferation;0.0334806994541949!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0339883990712447!GO:0030433;ER-associated protein catabolic process;0.0344697382828282!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0344697382828282!GO:0006520;amino acid metabolic process;0.0348284354677226!GO:0005784;translocon complex;0.0350903027820061!GO:0006275;regulation of DNA replication;0.0359480510860828!GO:0016408;C-acyltransferase activity;0.0362423245997966!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0366650414536564!GO:0030508;thiol-disulfide exchange intermediate activity;0.0368112055067049!GO:0045859;regulation of protein kinase activity;0.0370159452934972!GO:0016791;phosphoric monoester hydrolase activity;0.037219092100447!GO:0031371;ubiquitin conjugating enzyme complex;0.0382522593271968!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0384020775362372!GO:0008243;plasminogen activator activity;0.0385407002977257!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0390611417112594!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.039602337716804!GO:0009966;regulation of signal transduction;0.0398912597968304!GO:0042393;histone binding;0.0402255527436578!GO:0005680;anaphase-promoting complex;0.0403473516607476!GO:0043596;nuclear replication fork;0.0405490007230602!GO:0006904;vesicle docking during exocytosis;0.0409074031011107!GO:0006807;nitrogen compound metabolic process;0.0425649939830921!GO:0008320;protein transmembrane transporter activity;0.0425649939830921!GO:0008287;protein serine/threonine phosphatase complex;0.0426007472812866!GO:0048146;positive regulation of fibroblast proliferation;0.0426573169038909!GO:0006007;glucose catabolic process;0.0426573169038909!GO:0006360;transcription from RNA polymerase I promoter;0.042679566474567!GO:0004532;exoribonuclease activity;0.0429382396078806!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0429382396078806!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0429483295717468!GO:0045893;positive regulation of transcription, DNA-dependent;0.0429693755334327!GO:0030131;clathrin adaptor complex;0.0433402396807427!GO:0016407;acetyltransferase activity;0.0437178440128428!GO:0030911;TPR domain binding;0.0445668805961525!GO:0051059;NF-kappaB binding;0.0451872726660767!GO:0000781;chromosome, telomeric region;0.0452766616566685!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0452766616566685!GO:0016311;dephosphorylation;0.045770863191146!GO:0046519;sphingoid metabolic process;0.0458758089220729!GO:0019904;protein domain specific binding;0.0459871808229981!GO:0006270;DNA replication initiation;0.0462890563942385!GO:0004448;isocitrate dehydrogenase activity;0.0462954981792063!GO:0006338;chromatin remodeling;0.0462970677039502!GO:0030145;manganese ion binding;0.0483019068823415!GO:0006354;RNA elongation;0.0484139085374775!GO:0045879;negative regulation of smoothened signaling pathway;0.04903773216281!GO:0000178;exosome (RNase complex);0.0492760592552312!GO:0043433;negative regulation of transcription factor activity;0.0492809323384006!GO:0004860;protein kinase inhibitor activity;0.0492809323384006!GO:0019206;nucleoside kinase activity;0.049671349901839
|sample_id=11266
|sample_id=11266
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun
|sample_note=Originally library704 tailing failed, the remaining sample is being rerun
Line 76: Line 105:
|sample_tissue=internal thoracic artery
|sample_tissue=internal thoracic artery
|top_motifs=SOX{8,9,10}:1.83831374469;FOX{I1,J2}:1.80478927114;NFATC1..3:1.50544297905;RXR{A,B,G}:1.43209003981;FOXD3:1.28237301049;PAX6:1.12324759263;IKZF2:1.07299841269;ADNP_IRX_SIX_ZHX:1.04805352813;HAND1,2:1.04312075593;ELF1,2,4:1.03599904256;TLX1..3_NFIC{dimer}:1.02077765771;AR:1.01242912112;ALX1:0.933711729;HBP1_HMGB_SSRP1_UBTF:0.904599461158;FOXL1:0.802392567767;SOX2:0.771466073526;LEF1_TCF7_TCF7L1,2:0.768246784883;bHLH_family:0.756342501191;PAX8:0.737388349774;POU3F1..4:0.735959908202;TP53:0.72008697762;ETS1,2:0.683677004155;NR3C1:0.648944181723;IKZF1:0.634530218574;GATA6:0.629719324998;NR5A1,2:0.622918191885;NKX2-2,8:0.587178955307;ARID5B:0.57371843325;NFE2L1:0.560379016239;RBPJ:0.559390161393;SPZ1:0.552347415997;FOXQ1:0.548326680769;SPIB:0.532266817953;MYB:0.525875433306;POU1F1:0.511915030959;E2F1..5:0.483316803954;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.474800364733;SOX5:0.468313535977;TFAP4:0.452537943497;LHX3,4:0.446342222165;HMGA1,2:0.444200536178;PBX1:0.428784456955;TFDP1:0.420868754465;SMAD1..7,9:0.418763529142;ZFP161:0.396337767231;HES1:0.393448926482;SOX17:0.388415742283;PITX1..3:0.385888368657;PAX1,9:0.373378667372;GFI1B:0.347939027537;NRF1:0.316858665313;DMAP1_NCOR{1,2}_SMARC:0.314496231499;TEF:0.29772979826;FOXA2:0.295741674296;GZF1:0.277519920893;TEAD1:0.26261918685;GATA4:0.24571875084;PAX5:0.234349339286;ZNF143:0.221641432327;TFAP2{A,C}:0.220407778336;NKX3-2:0.197142806142;STAT2,4,6:0.188983327922;GFI1:0.182243113371;ZNF148:0.181398227832;NFIX:0.174886752523;PAX4:0.149053402782;NFE2:0.141753887898;NFE2L2:0.132154280317;BACH2:0.11765685704;CRX:0.111241837521;EVI1:0.105829265263;NKX2-3_NKX2-5:0.0968836579199;FOS_FOS{B,L1}_JUN{B,D}:0.0923035499938;FOXM1:0.0919835047584;ZBTB6:0.080641959784;XCPE1{core}:0.0794744719409;ONECUT1,2:0.0747059120989;REST:0.0710321496967;HIC1:0.0695745378719;HNF4A_NR2F1,2:0.0628893012972;NHLH1,2:0.0611207382133;ZNF238:0.0524379106062;SPI1:0.0444490016762;CDC5L:0.0405518554621;T:0.0335268023997;RORA:0.0323240907395;YY1:0.0113767660296;NFY{A,B,C}:0.0111679319434;UFEwm:0.00380889932107;NANOG:-0.00397597231745;PRDM1:-0.0141517397866;FOXP1:-0.0155771399886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0211816344678;MYOD1:-0.030582667111;HOX{A5,B5}:-0.0395939159118;EN1,2:-0.077585916171;MTF1:-0.0934314103905;FOSL2:-0.0968790193419;HNF1A:-0.10210064508;MTE{core}:-0.104874321996;TGIF1:-0.110597027341;PRRX1,2:-0.126379875441;LMO2:-0.142280529427;AHR_ARNT_ARNT2:-0.146564264264;DBP:-0.166774646098;FOXN1:-0.180389992472;KLF4:-0.181606475193;SP1:-0.183599480749;CUX2:-0.18667415925;POU6F1:-0.192277100266;MED-1{core}:-0.201468068502;TLX2:-0.207508536487;MEF2{A,B,C,D}:-0.215629470375;NFKB1_REL_RELA:-0.216642224612;MYBL2:-0.21955930354;GCM1,2:-0.258967938905;NANOG{mouse}:-0.274360435058;TAL1_TCF{3,4,12}:-0.275955833132;GTF2I:-0.275986361695;ZIC1..3:-0.282824706892;MAZ:-0.291544321364;RFX1:-0.301581038722;AIRE:-0.303345482448;STAT1,3:-0.303458136666;PAX2:-0.31029802182;TBP:-0.316739880439;HLF:-0.354253095174;TFAP2B:-0.364616441152;RREB1:-0.404912351996;PPARG:-0.407925550873;SNAI1..3:-0.411017159406;POU5F1:-0.417048535182;SRF:-0.419916801046;ZNF423:-0.428131581393;VSX1,2:-0.435723428906;HOXA9_MEIS1:-0.438363539053;ELK1,4_GABP{A,B1}:-0.439829571499;MZF1:-0.440120960154;ATF2:-0.440488193955;ZNF384:-0.460145949809;OCT4_SOX2{dimer}:-0.468961294008;CREB1:-0.470092004731;TFCP2:-0.471210641311;PAX3,7:-0.47166343376;STAT5{A,B}:-0.47713710725;GTF2A1,2:-0.483712867184;IRF1,2:-0.491834865322;FOX{D1,D2}:-0.496491215049;RUNX1..3:-0.522824326304;HIF1A:-0.530191939402;ATF6:-0.532301501345;ESR1:-0.533048063547;BPTF:-0.537873435708;HMX1:-0.538576747823;CEBPA,B_DDIT3:-0.544009295598;ZBTB16:-0.576752539288;XBP1:-0.577371383903;EGR1..3:-0.581533725141;MAFB:-0.603490050265;EBF1:-0.610750933105;HSF1,2:-0.618758752902;GLI1..3:-0.64125045368;ZEB1:-0.648875735934;IRF7:-0.668442672161;NFIL3:-0.68996621098;PATZ1:-0.69048311574;TBX4,5:-0.699717320544;JUN:-0.700259027909;RXRA_VDR{dimer}:-0.715600225299;FOXO1,3,4:-0.716240847865;POU2F1..3:-0.734787083228;ATF5_CREB3:-0.736455332021;EP300:-0.740081777831;ESRRA:-0.749257189269;CDX1,2,4:-0.755215766781;BREu{core}:-0.755267492442;NKX2-1,4:-0.758738640856;FOXP3:-0.765758552177;ALX4:-0.770340051484;SREBF1,2:-0.784208349557;ATF4:-0.80264619915;HOX{A4,D4}:-0.836935955044;NKX3-1:-0.837252433883;TOPORS:-0.87594738114;RFX2..5_RFXANK_RFXAP:-0.876230522963;PDX1:-0.889818188675;FOX{F1,F2,J1}:-0.893418346366;MYFfamily:-0.896296844606;NR1H4:-0.942960813548;NR6A1:-1.00990986834;NKX6-1,2:-1.01361372026;HOX{A6,A7,B6,B7}:-1.26977998967
|top_motifs=SOX{8,9,10}:1.83831374469;FOX{I1,J2}:1.80478927114;NFATC1..3:1.50544297905;RXR{A,B,G}:1.43209003981;FOXD3:1.28237301049;PAX6:1.12324759263;IKZF2:1.07299841269;ADNP_IRX_SIX_ZHX:1.04805352813;HAND1,2:1.04312075593;ELF1,2,4:1.03599904256;TLX1..3_NFIC{dimer}:1.02077765771;AR:1.01242912112;ALX1:0.933711729;HBP1_HMGB_SSRP1_UBTF:0.904599461158;FOXL1:0.802392567767;SOX2:0.771466073526;LEF1_TCF7_TCF7L1,2:0.768246784883;bHLH_family:0.756342501191;PAX8:0.737388349774;POU3F1..4:0.735959908202;TP53:0.72008697762;ETS1,2:0.683677004155;NR3C1:0.648944181723;IKZF1:0.634530218574;GATA6:0.629719324998;NR5A1,2:0.622918191885;NKX2-2,8:0.587178955307;ARID5B:0.57371843325;NFE2L1:0.560379016239;RBPJ:0.559390161393;SPZ1:0.552347415997;FOXQ1:0.548326680769;SPIB:0.532266817953;MYB:0.525875433306;POU1F1:0.511915030959;E2F1..5:0.483316803954;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.474800364733;SOX5:0.468313535977;TFAP4:0.452537943497;LHX3,4:0.446342222165;HMGA1,2:0.444200536178;PBX1:0.428784456955;TFDP1:0.420868754465;SMAD1..7,9:0.418763529142;ZFP161:0.396337767231;HES1:0.393448926482;SOX17:0.388415742283;PITX1..3:0.385888368657;PAX1,9:0.373378667372;GFI1B:0.347939027537;NRF1:0.316858665313;DMAP1_NCOR{1,2}_SMARC:0.314496231499;TEF:0.29772979826;FOXA2:0.295741674296;GZF1:0.277519920893;TEAD1:0.26261918685;GATA4:0.24571875084;PAX5:0.234349339286;ZNF143:0.221641432327;TFAP2{A,C}:0.220407778336;NKX3-2:0.197142806142;STAT2,4,6:0.188983327922;GFI1:0.182243113371;ZNF148:0.181398227832;NFIX:0.174886752523;PAX4:0.149053402782;NFE2:0.141753887898;NFE2L2:0.132154280317;BACH2:0.11765685704;CRX:0.111241837521;EVI1:0.105829265263;NKX2-3_NKX2-5:0.0968836579199;FOS_FOS{B,L1}_JUN{B,D}:0.0923035499938;FOXM1:0.0919835047584;ZBTB6:0.080641959784;XCPE1{core}:0.0794744719409;ONECUT1,2:0.0747059120989;REST:0.0710321496967;HIC1:0.0695745378719;HNF4A_NR2F1,2:0.0628893012972;NHLH1,2:0.0611207382133;ZNF238:0.0524379106062;SPI1:0.0444490016762;CDC5L:0.0405518554621;T:0.0335268023997;RORA:0.0323240907395;YY1:0.0113767660296;NFY{A,B,C}:0.0111679319434;UFEwm:0.00380889932107;NANOG:-0.00397597231745;PRDM1:-0.0141517397866;FOXP1:-0.0155771399886;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0211816344678;MYOD1:-0.030582667111;HOX{A5,B5}:-0.0395939159118;EN1,2:-0.077585916171;MTF1:-0.0934314103905;FOSL2:-0.0968790193419;HNF1A:-0.10210064508;MTE{core}:-0.104874321996;TGIF1:-0.110597027341;PRRX1,2:-0.126379875441;LMO2:-0.142280529427;AHR_ARNT_ARNT2:-0.146564264264;DBP:-0.166774646098;FOXN1:-0.180389992472;KLF4:-0.181606475193;SP1:-0.183599480749;CUX2:-0.18667415925;POU6F1:-0.192277100266;MED-1{core}:-0.201468068502;TLX2:-0.207508536487;MEF2{A,B,C,D}:-0.215629470375;NFKB1_REL_RELA:-0.216642224612;MYBL2:-0.21955930354;GCM1,2:-0.258967938905;NANOG{mouse}:-0.274360435058;TAL1_TCF{3,4,12}:-0.275955833132;GTF2I:-0.275986361695;ZIC1..3:-0.282824706892;MAZ:-0.291544321364;RFX1:-0.301581038722;AIRE:-0.303345482448;STAT1,3:-0.303458136666;PAX2:-0.31029802182;TBP:-0.316739880439;HLF:-0.354253095174;TFAP2B:-0.364616441152;RREB1:-0.404912351996;PPARG:-0.407925550873;SNAI1..3:-0.411017159406;POU5F1:-0.417048535182;SRF:-0.419916801046;ZNF423:-0.428131581393;VSX1,2:-0.435723428906;HOXA9_MEIS1:-0.438363539053;ELK1,4_GABP{A,B1}:-0.439829571499;MZF1:-0.440120960154;ATF2:-0.440488193955;ZNF384:-0.460145949809;OCT4_SOX2{dimer}:-0.468961294008;CREB1:-0.470092004731;TFCP2:-0.471210641311;PAX3,7:-0.47166343376;STAT5{A,B}:-0.47713710725;GTF2A1,2:-0.483712867184;IRF1,2:-0.491834865322;FOX{D1,D2}:-0.496491215049;RUNX1..3:-0.522824326304;HIF1A:-0.530191939402;ATF6:-0.532301501345;ESR1:-0.533048063547;BPTF:-0.537873435708;HMX1:-0.538576747823;CEBPA,B_DDIT3:-0.544009295598;ZBTB16:-0.576752539288;XBP1:-0.577371383903;EGR1..3:-0.581533725141;MAFB:-0.603490050265;EBF1:-0.610750933105;HSF1,2:-0.618758752902;GLI1..3:-0.64125045368;ZEB1:-0.648875735934;IRF7:-0.668442672161;NFIL3:-0.68996621098;PATZ1:-0.69048311574;TBX4,5:-0.699717320544;JUN:-0.700259027909;RXRA_VDR{dimer}:-0.715600225299;FOXO1,3,4:-0.716240847865;POU2F1..3:-0.734787083228;ATF5_CREB3:-0.736455332021;EP300:-0.740081777831;ESRRA:-0.749257189269;CDX1,2,4:-0.755215766781;BREu{core}:-0.755267492442;NKX2-1,4:-0.758738640856;FOXP3:-0.765758552177;ALX4:-0.770340051484;SREBF1,2:-0.784208349557;ATF4:-0.80264619915;HOX{A4,D4}:-0.836935955044;NKX3-1:-0.837252433883;TOPORS:-0.87594738114;RFX2..5_RFXANK_RFXAP:-0.876230522963;PDX1:-0.889818188675;FOX{F1,F2,J1}:-0.893418346366;MYFfamily:-0.896296844606;NR1H4:-0.942960813548;NR6A1:-1.00990986834;NKX6-1,2:-1.01361372026;HOX{A6,A7,B6,B7}:-1.26977998967
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11266-116G6;search_select_hide=table117:FF:11266-116G6
}}
}}

Latest revision as of 16:29, 3 June 2020

Name:Endothelial Cells - Thoracic, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11926
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueinternal thoracic artery
dev stage34 years old adult
sexfemale
age34
cell typeblood vessel endothelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1696
catalog numberCA308-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005486
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11926 CAGE DRX008229 DRR009101
Accession ID Hg19

Library idBAMCTSS
CNhs11926 DRZ000526 DRZ001911
Accession ID Hg38

Library idBAMCTSS
CNhs11926 DRZ011876 DRZ013261
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005486
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10007.TGACCA sRNA-Seq DRX037091 DRR041457
Accession ID Hg19

Library idBAMCTSS
SRhi10007.TGACCA DRZ007099


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.129
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.276
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.074
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.634
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.145
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.38
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.224
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.34
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.268
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.329
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.634
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11926

Jaspar motifP-value
MA0002.20.0806
MA0003.10.552
MA0004.10.94
MA0006.10.172
MA0007.10.0636
MA0009.10.409
MA0014.10.484
MA0017.10.447
MA0018.23.33818e-8
MA0019.10.187
MA0024.10.0838
MA0025.10.193
MA0027.10.793
MA0028.10.797
MA0029.10.438
MA0030.10.0382
MA0031.10.321
MA0035.20.0113
MA0038.10.55
MA0039.20.792
MA0040.10.732
MA0041.10.294
MA0042.10.64
MA0043.12.90084e-7
MA0046.10.699
MA0047.20.391
MA0048.10.057
MA0050.10.0117
MA0051.10.575
MA0052.10.2
MA0055.10.00181
MA0057.10.429
MA0058.10.758
MA0059.10.13
MA0060.10.958
MA0061.10.261
MA0062.20.422
MA0065.20.399
MA0066.10.509
MA0067.10.0234
MA0068.10.319
MA0069.10.00607
MA0070.10.63
MA0071.10.269
MA0072.10.471
MA0073.10.44
MA0074.10.412
MA0076.10.0989
MA0077.14.75518e-5
MA0078.10.022
MA0079.20.453
MA0080.20.00243
MA0081.10.235
MA0083.10.0929
MA0084.10.475
MA0087.10.0982
MA0088.10.0201
MA0090.10.491
MA0091.10.874
MA0092.10.381
MA0093.10.917
MA0099.21.39082e-5
MA0100.10.805
MA0101.10.626
MA0102.21.79076e-4
MA0103.10.0274
MA0104.20.597
MA0105.10.29
MA0106.14.43836e-4
MA0107.10.878
MA0108.20.00575
MA0111.10.125
MA0112.20.988
MA0113.10.54
MA0114.10.963
MA0115.10.607
MA0116.10.372
MA0117.10.443
MA0119.10.00765
MA0122.10.193
MA0124.10.313
MA0125.10.776
MA0131.10.335
MA0135.10.151
MA0136.10.00875
MA0137.20.857
MA0138.20.6
MA0139.10.0695
MA0140.10.0106
MA0141.10.131
MA0142.10.748
MA0143.10.411
MA0144.10.162
MA0145.10.487
MA0146.10.816
MA0147.10.192
MA0148.10.116
MA0149.10.0339
MA0150.10.188
MA0152.10.999
MA0153.10.523
MA0154.10.414
MA0155.10.321
MA0156.10.00433
MA0157.10.621
MA0159.10.31
MA0160.10.995
MA0162.10.0546
MA0163.10.0449
MA0164.10.699
MA0258.10.87
MA0259.10.977



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11926

Novel motifP-value
10.0344
100.837
1000.148
1010.179
1020.825
1030.224
1040.74
1050.556
1060.704
1070.118
1080.879
1090.0772
110.125
1100.00124
1110.0448
1120.49
1130.672
1140.209
1150.911
1160.282
1170.446
1180.0459
1190.773
120.727
1200.0122
1210.285
1220.527
1230.145
1240.62
1250.949
1260.839
1270.581
1280.422
1290.211
130.341
1300.821
1310.287
1320.314
1330.877
1340.748
1350.414
1360.191
1370.503
1380.699
1390.831
140.135
1400.862
1410.0392
1420.0617
1430.521
1440.298
1450.285
1460.925
1470.387
1480.321
1490.0536
150.652
1500.588
1510.78
1520.0744
1530.273
1540.465
1550.31
1560.187
1570.141
1580.231
1590.29
160.946
1600.0851
1610.496
1620.258
1630.859
1640.225
1650.968
1660.346
1670.463
1680.242
1690.0165
170.381
180.839
190.197
20.922
200.154
210.779
220.651
230.211
240.221
251
260.574
270.556
280.38
290.783
30.76
300.469
310.694
320.422
330.129
340.167
350.427
360.0189
370.175
380.0907
390.237
40.834
400.0149
410.00484
420.202
430.959
440.816
450.863
460.319
470.193
480.144
490.91
50.648
500.947
510.551
520.296
530.753
540.933
550.805
560.676
570.185
580.601
590.358
60.59
600.514
610.654
620.574
630.769
640.916
650.757
660.0625
670.441
680.195
690.938
70.192
700.91
710.458
720.678
730.0117
740.955
750.113
760.563
770.191
780.0916
790.699
80.00713
800.355
810.576
820.64
830.813
840.308
850.746
860.448
870.267
880.856
890.95
90.432
900.476
910.596
920.36
930.769
940.966
950.073
960.173
970.344
980.329
990.00976



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11926


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)
0002544 (aortic endothelial cell)
0002545 (thoracic aorta endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0004573 (systemic artery)
0000487 (simple squamous epithelium)
0005800 (segment of aorta)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001515 (thoracic aorta)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0000915 (thoracic segment of trunk)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000048 (human endothelial cell of the aorta sample)
0000001 (sample)
0000051 (human thoracic endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

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