FF:11264-116G4: Difference between revisions

Latest revision as of 16:29, 3 June 2020

Name:	Endothelial Cells - Artery, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12496
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	artery
dev stage	51 years old adult
sex	female
age	51
cell type	blood vessel endothelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1851
catalog number	CA300-R10a
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005974

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12496		CAGE		DRX008220		DRR009092

Accession ID Hg19

Library id		BAM		CTSS
CNhs12496		DRZ000517		DRZ001902

Accession ID Hg38

Library id		BAM		CTSS
CNhs12496		DRZ011867		DRZ013252

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005974

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10004.TGACCA		sRNA-Seq		DRX037034		DRR041400

Accession ID Hg19

Library id		BAM		CTSS
SRhi10004.TGACCA		DRZ007042

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0318
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0782
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.218
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.491
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.012
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.306
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.228
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.123
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.203
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.124
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.265
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.938
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.428
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12496

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.45
MA0003.1	MA0003.1	0.332
MA0004.1	MA0004.1	0.93
MA0006.1	MA0006.1	0.0444
MA0007.1	MA0007.1	0.0379
MA0009.1	MA0009.1	0.34
MA0014.1	MA0014.1	0.816
MA0017.1	MA0017.1	0.235
MA0018.2	MA0018.2	4.9676e-5
MA0019.1	MA0019.1	0.0332
MA0024.1	MA0024.1	0.00311
MA0025.1	MA0025.1	0.287
MA0027.1	MA0027.1	0.931
MA0028.1	MA0028.1	0.0514
MA0029.1	MA0029.1	0.265
MA0030.1	MA0030.1	0.506
MA0031.1	MA0031.1	0.267
MA0035.2	MA0035.2	0.00474
MA0038.1	MA0038.1	0.429
MA0039.2	MA0039.2	0.367
MA0040.1	MA0040.1	0.279
MA0041.1	MA0041.1	0.199
MA0042.1	MA0042.1	0.593
MA0043.1	MA0043.1	5.95052e-7
MA0046.1	MA0046.1	0.622
MA0047.2	MA0047.2	0.0275
MA0048.1	MA0048.1	0.342
MA0050.1	MA0050.1	0.034
MA0051.1	MA0051.1	0.842
MA0052.1	MA0052.1	0.195
MA0055.1	MA0055.1	0.0379
MA0057.1	MA0057.1	0.132
MA0058.1	MA0058.1	0.868
MA0059.1	MA0059.1	0.76
MA0060.1	MA0060.1	0.37
MA0061.1	MA0061.1	0.954
MA0062.2	MA0062.2	0.0351
MA0065.2	MA0065.2	0.585
MA0066.1	MA0066.1	0.658
MA0067.1	MA0067.1	0.0278
MA0068.1	MA0068.1	0.8
MA0069.1	MA0069.1	0.104
MA0070.1	MA0070.1	0.702
MA0071.1	MA0071.1	0.212
MA0072.1	MA0072.1	0.568
MA0073.1	MA0073.1	0.399
MA0074.1	MA0074.1	0.26
MA0076.1	MA0076.1	5.17806e-4
MA0077.1	MA0077.1	3.23815e-6
MA0078.1	MA0078.1	0.0562
MA0079.2	MA0079.2	0.216
MA0080.2	MA0080.2	0.0315
MA0081.1	MA0081.1	0.434
MA0083.1	MA0083.1	0.176
MA0084.1	MA0084.1	0.643
MA0087.1	MA0087.1	0.568
MA0088.1	MA0088.1	0.686
MA0090.1	MA0090.1	0.196
MA0091.1	MA0091.1	0.401
MA0092.1	MA0092.1	0.778
MA0093.1	MA0093.1	0.961
MA0099.2	MA0099.2	1.3098e-7
MA0100.1	MA0100.1	0.0774
MA0101.1	MA0101.1	0.762
MA0102.2	MA0102.2	6.46064e-5
MA0103.1	MA0103.1	0.673
MA0104.2	MA0104.2	0.122
MA0105.1	MA0105.1	0.9
MA0106.1	MA0106.1	0.0244
MA0107.1	MA0107.1	0.357
MA0108.2	MA0108.2	0.259
MA0111.1	MA0111.1	0.4
MA0112.2	MA0112.2	0.9
MA0113.1	MA0113.1	0.201
MA0114.1	MA0114.1	0.355
MA0115.1	MA0115.1	0.277
MA0116.1	MA0116.1	0.508
MA0117.1	MA0117.1	0.253
MA0119.1	MA0119.1	0.0918
MA0122.1	MA0122.1	0.263
MA0124.1	MA0124.1	0.883
MA0125.1	MA0125.1	0.643
MA0131.1	MA0131.1	0.322
MA0135.1	MA0135.1	0.309
MA0136.1	MA0136.1	0.101
MA0137.2	MA0137.2	0.0581
MA0138.2	MA0138.2	0.936
MA0139.1	MA0139.1	0.504
MA0140.1	MA0140.1	0.0335
MA0141.1	MA0141.1	0.0157
MA0142.1	MA0142.1	0.326
MA0143.1	MA0143.1	0.444
MA0144.1	MA0144.1	0.555
MA0145.1	MA0145.1	0.203
MA0146.1	MA0146.1	0.498
MA0147.1	MA0147.1	0.296
MA0148.1	MA0148.1	0.0254
MA0149.1	MA0149.1	0.0978
MA0150.1	MA0150.1	0.451
MA0152.1	MA0152.1	0.809
MA0153.1	MA0153.1	0.102
MA0154.1	MA0154.1	0.318
MA0155.1	MA0155.1	0.0361
MA0156.1	MA0156.1	0.13
MA0157.1	MA0157.1	0.344
MA0159.1	MA0159.1	0.402
MA0160.1	MA0160.1	0.142
MA0162.1	MA0162.1	0.0394
MA0163.1	MA0163.1	0.541
MA0164.1	MA0164.1	0.739
MA0258.1	MA0258.1	0.961
MA0259.1	MA0259.1	0.193

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12496

Novel motif	Logo	P-value
1	1	0.902
10	10	0.204
100	100	0.951
101	101	0.112
102	102	0.73
103	103	0.58
104	104	0.671
105	105	0.898
106	106	0.246
107	107	0.0479
108	108	0.303
109	109	0.33
11	11	0.257
110	110	0.0708
111	111	0.74
112	112	0.467
113	113	0.372
114	114	0.511
115	115	0.698
116	116	0.285
117	117	0.772
118	118	0.339
119	119	0.777
12	12	0.573
120	120	0.00172
121	121	0.609
122	122	0.681
123	123	0.00461
124	124	0.126
125	125	0.915
126	126	0.713
127	127	0.439
128	128	0.435
129	129	0.398
13	13	0.886
130	130	0.889
131	131	0.532
132	132	0.137
133	133	0.905
134	134	0.548
135	135	0.305
136	136	0.413
137	137	0.106
138	138	0.572
139	139	0.562
14	14	0.914
140	140	0.711
141	141	0.915
142	142	0.762
143	143	0.105
144	144	0.727
145	145	0.197
146	146	0.399
147	147	0.0626
148	148	0.442
149	149	0.0124
15	15	0.964
150	150	0.184
151	151	0.804
152	152	0.0194
153	153	0.0626
154	154	0.337
155	155	0.564
156	156	0.301
157	157	0.871
158	158	0.107
159	159	0.843
16	16	0.471
160	160	0.034
161	161	0.273
162	162	0.883
163	163	0.725
164	164	0.366
165	165	0.121
166	166	0.518
167	167	0.132
168	168	0.336
169	169	0.0688
17	17	0.261
18	18	0.839
19	19	0.283
2	2	0.27
20	20	0.559
21	21	0.851
22	22	0.247
23	23	0.252
24	24	0.731
25	25	0.378
26	26	0.803
27	27	0.226
28	28	0.182
29	29	0.854
3	3	0.841
30	30	0.672
31	31	0.65
32	32	0.48
33	33	0.361
34	34	0.0755
35	35	0.444
36	36	0.248
37	37	0.299
38	38	0.183
39	39	0.508
4	4	0.969
40	40	0.00508
41	41	0.0806
42	42	0.913
43	43	0.795
44	44	0.774
45	45	0.234
46	46	0.496
47	47	0.588
48	48	0.138
49	49	0.734
5	5	0.878
50	50	0.744
51	51	0.616
52	52	0.698
53	53	0.325
54	54	0.525
55	55	0.714
56	56	0.76
57	57	0.561
58	58	0.191
59	59	0.0624
6	6	0.21
60	60	0.868
61	61	0.837
62	62	0.672
63	63	0.396
64	64	0.68
65	65	0.119
66	66	0.605
67	67	0.409
68	68	0.0552
69	69	0.23
7	7	0.972
70	70	0.677
71	71	0.689
72	72	0.102
73	73	0.00241
74	74	0.348
75	75	0.546
76	76	0.409
77	77	0.0382
78	78	0.815
79	79	0.0138
8	8	0.0276
80	80	0.237
81	81	0.597
82	82	0.744
83	83	0.415
84	84	0.465
85	85	0.819
86	86	0.655
87	87	0.111
88	88	0.8
89	89	0.145
9	9	0.327
90	90	0.117
91	91	0.363
92	92	0.507
93	93	0.841
94	94	0.965
95	95	0.0419
96	96	0.35
97	97	0.552
98	98	0.372
99	99	0.0135

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12496

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000047 human endothelial cell of the artery sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
1000413 (endothelial cell of artery)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001637 (artery)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003509 (arterial blood vessel)
0004638 (blood vessel endothelium)
0003915 (endothelial tube)
0004700 (arterial system endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0001917 (endothelium of artery)
0004535 (cardiovascular system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000047 (human endothelial cell of the artery sample)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001637,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0005291,UBERON:0003509,UBERON:0000487,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
+|DRA_sample_Accession=CAGE@SAMD00005974
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:1000413,CL:0000222,CL:0002546
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005974
+|accession_numbers=CAGE;DRX008220;DRR009092;DRZ000517;DRZ001902;DRZ011867;DRZ013252
+|accession_numbers_RNASeq=sRNA-Seq;DRX037034;DRR041400;DRZ007042
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001637,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003509,UBERON:0004638,UBERON:0003915,UBERON:0004700,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0001917,UBERON:0004535,UBERON:0004572,UBERON:0004537,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:1000413
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000047,FF:0000001
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.35!291.55!SOX18;;chr21:39870339..39870443,-!p1@ERG!2.03!106.13!ERG;;chr8:10588010..10588030,-!p1@SOX7!1.98!95.23!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.93!84.74!SOX17;;chr17:6926362..6926377,+!p1@BCL6B!1.82!64.60!BCL6B;;chr1:6479968..6479986,-!p1@HES2!1.71!50.76!HES2;;chr18:53068911..53068935,-!p4@TCF4!1.62!45.31!TCF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.14!ZBED1;;chr11:65429891..65429915,-!p7@RELA!1.45!27.27!RELA;;chr6:34204921..34204939,+!p3@HMGA1!1.44!755.10!HMGA1;;chr12:96588368..96588394,+!p3@ELK3!1.43!67.96!ELK3;;chr6:126070769..126070801,+!p1@HEY2!1.43!29.78!HEY2;;chr19:13213511..13213545,-!p2@LYL1!1.43!28.11!LYL1;;chr18:19749541..19749557,+!p1@GATA6!1.41!75.09!GATA6;;chr10:94449703..94449718,+!p1@HHEX!1.37!85.58!HHEX;;chr19:13213399..13213414,-!p6@LYL1!1.25!16.78!LYL1;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.78!GATA4;;chr16:86600426..86600441,+!p1@FOXC2!1.23!39.01!FOXC2;;chr5:92918919..92918942,+!p1@NR2F1!1.19!63.76!NR2F1;;chr3:128206762..128206781,-!p2@GATA2!1.12!75.09!GATA2;;chr20:6748325..6748352,+!p1@BMP2!1.11!17.20!BMP2;;chr7:35293685..35293718,-!p1@TBX20!1.08!10.91!TBX20;;chr19:13213555..13213568,-!p5@LYL1!1.06!10.49!LYL1;;chr12:66218255..66218304,+!p3@HMGA2!1.05!28.11!HMGA2;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.91!MECOM;;chr2:237077022..237077038,-!p1@GBX2!1.01!9.23!GBX2;;chr19:13213662..13213686,-!p1@LYL1!1.00!13.42!LYL1;;chr15:83953397..83953425,-!p1@BNC1!0.99!10.07!BNC1;;chr9:16705069..16705086,-!p3@BNC2!0.97!8.39!BNC2;;chr1:47695003..47695042,-!p2@TAL1!0.97!8.39!TAL1;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.42!TFAP2A;;chr4:174451370..174451387,-!p1@HAND2!0.95!7.97!HAND2;;chr17:46655672..46655697,-!p3@HOXB4!0.93!7.55!HOXB4;;chr1:200008734..200008765,+!p2@NR5A2!0.93!7.55!NR5A2;;chr7:149470641..149470694,-!p1@ZNF467!0.91!33.98!ZNF467;;chr20:42543441..42543497,+!p1@TOX2!0.91!33.56!TOX2;;chr12:66218212..66218244,+!p5@HMGA2!0.91!10.49!HMGA2;;chr10:31288370..31288393,-!p3@ZNF438!0.91!7.13!ZNF438;;chr14:38064429..38064486,-!p1@FOXA1!0.91!7.13!FOXA1;;chr17:8027418..8027432,-!p1@HES7!0.91!7.13!HES7;;chr18:53177984..53178004,-!p17@TCF4!0.91!7.13!TCF4;;chr11:65430554..65430579,-!p3@RELA!0.90!18.46!RELA;;chr4:57522166..57522260,-!p2@HOPX!0.90!7.97!HOPX;;chr19:46801639..46801699,+!p1@HIF3A!0.89!6.71!HIF3A;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.95!ZNF521;;chr20:42543506..42543549,+!p2@TOX2!0.86!15.52!TOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.85!724.06!HMGA1;;chr10:94449675..94449694,+!p2@HHEX!0.85!17.20!HHEX;;chr15:96876966..96877017,+!p12@NR2F2!0.84!8.81!NR2F2;;chr18:53068982..53068993,-!p20@TCF4!0.84!5.87!TCF4;;chr5:92918956..92918969,+!p4@NR2F1!0.83!6.29!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.82!72.15!MLLT11;;chr12:66218183..66218209,+!p4@HMGA2!0.82!11.33!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.81!10.07!TBX18;;chr5:92918894..92918912,+!p2@NR2F1!0.80!18.46!NR2F1;;chr19:1652555..1652568,-!p2@TCF3!0.79!22.65!TCF3;;chr20:50721803..50721857,-!p2@ZFP64!0.79!8.39!ZFP64;;chr18:19749386..19749404,+!p2@GATA6!0.79!7.55!GATA6;;chr15:96874012..96874042,+!p2@NR2F2!0.78!49.08!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.78!26.85!NFE2L3;;chr6:10415276..10415341,-!p2@TFAP2A!0.78!6.29!TFAP2A;;chr8:55370720..55370733,+!p2@SOX17!0.78!5.03!SOX17;;chr18:53068940..53068951,-!p21@TCF4!0.78!5.03!TCF4;;chr3:25469815..25469866,+!p3@RARB!0.78!5.03!RARB;;chr4:57522598..57522664,-!p3@HOPX!0.78!5.03!HOPX;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!382.58!TAX1BP3;;chr2:85981222..85981259,+!p2@ATOH8!0.77!8.39!ATOH8;;chr3:168864315..168864339,-!p2@MECOM!0.77!8.39!MECOM;;chr15:96873984..96873999,+!p3@NR2F2!0.76!38.59!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!0.76!23.91!HMGA2;;chr2:46524537..46524553,+!p1@EPAS1!0.75!510.11!EPAS1;;chr17:41623692..41623715,-!p1@ETV4!0.75!21.39!ETV4;;chr19:56152332..56152347,+!p4@ZNF580!0.75!11.33!ZNF580;;chr8:37963466..37963506,+!p3@ASH2L!0.75!5.87!ASH2L;;chr7:115670804..115670825,-!p1@TFEC!0.75!4.61!TFEC;;chr7:139741594..139741615,-!p5@PARP12!0.75!4.61!PARP12;;chr14:74256787..74256858,-!p6@C14orf43!0.75!4.61!C14orf43;;chr17:6926381..6926392,+!p2@BCL6B!0.75!4.61!BCL6B;;chr11:128563948..128564003,+!p1@FLI1!0.74!60.83!FLI1;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!36.92!ZMAT3;;chr9:14314131..14314147,-!p2@NFIB!0.74!27.69!NFIB;;chr11:65667884..65667895,-!p2@FOSL1!0.74!19.30!FOSL1;;chr8:106330656..106330684,+!p1@ZFPM2!0.72!12.17!ZFPM2;;chr15:66994561..66994597,+!p2@SMAD6!0.72!10.91!SMAD6;;chr19:13213465..13213478,-!p7@LYL1!0.72!4.19!LYL1;;chr4:57522674..57522699,-!p5@HOPX!0.72!4.19!HOPX;;chr6:28321971..28321995,-!p1@ZNF323!0.72!4.19!ZNF323;;chr12:3068544..3068597,+!p1@TEAD4!0.71!27.69!TEAD4;;chr2:74730430..74730451,-!p1@LBX2!0.71!7.13!LBX2;;chr19:49864746..49864780,-!p2@TEAD2!0.71!5.87!TEAD2;;chr8:106330696..106330719,+!p2@ZFPM2!0.71!5.45!ZFPM2;;chr15:96873921..96873946,+!p1@NR2F2!0.70!130.04!NR2F2;;chr17:41622925..41622976,-!p3@ETV4!0.70!6.29!ETV4;;chr17:46655704..46655718,-!p2@HOXB4!0.70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+|ffid_belonging_in_development=CL:0002546,CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Artery%252c%2520donor1.CNhs12496.11264-116G4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11264-116G4
 |is_a=EFO:0002091;;FF:0000047
 |is_obsolete=
+|library_id=CNhs12496
+|library_id_phase_based=2:CNhs12496
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11264
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.TGACCA.11264
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11264
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TGACCA.11264
 |name=Endothelial Cells - Artery, donor1
 |namespace=FANTOM5
@@ Line 44: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12496,LSID916,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10004,,,
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 |rna_box=116
 |rna_catalog_number=CA300-R10a
@@ Line 58: / Line 82: @@
 |rna_tube_id=116G4
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10004.TGACCA
 |sample_age=51
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 80: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11264-116G4;search_select_hide=table117:FF:11264-116G4
 }}

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FF:11264-116G4: Difference between revisions

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Latest revision as of 16:29, 3 June 2020

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