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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005860
|DRA_sample_Accession=CAGE@SAMD00005860
|accession_numbers=CAGE;DRX008240;DRR009112;DRZ000537;DRZ001922
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005860
|HumanCAGEScanFiles=NCig10042;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.NCig10042.11245-116E3.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008240;DRR009112;DRZ000537;DRZ001922;DRZ011887;DRZ013272
|accession_numbers_RNASeq=sRNA-Seq;DRX037185;DRR041551;DRZ007193
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000947,UBERON:0001637,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000055,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0004573,UBERON:0003509,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0004797,UBERON:0010317,UBERON:0007798,UBERON:0000415,UBERON:0007240,UBERON:0005742,UBERON:0005734,UBERON:0004664,UBERON:0004535,UBERON:0004571,UBERON:0010191,UBERON:0004572,UBERON:0004537,UBERON:0001009,UBERON:0004663
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:1000306,CL:0002547
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.70!55.84!PRRX1;;chr8:55370487..55370503,+!p1@SOX17!1.59!37.48!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!1.56!47.49!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.53!87.25!OSR1;;chr1:170633262..170633285,+!p3@PRRX1!1.43!29.25!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.36!21.91!ZBED1;;chr21:38071430..38071456,+!p1@SIM2!1.33!20.26!SIM2;;chr18:19749541..19749557,+!p1@GATA6!1.26!53.44!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.25!24.06!GATA6;;chr20:30433396..30433414,-!p1@FOXS1!1.25!16.59!FOXS1;;chr4:174450089..174450153,-!p2@HAND2!1.24!16.46!HAND2;;chr4:174451370..174451387,-!p1@HAND2!1.14!12.92!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.13!64.08!CREB3L1;;chr1:170633058..170633084,+!p5@PRRX1!1.13!12.41!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.06!11.90!MSC;;chr16:86600426..86600441,+!p1@FOXC2!1.05!25.71!FOXC2;;chr15:42749722..42749739,-!p2@ZFP106!1.02!17.10!ZFP106;;chr8:72756667..72756736,-!p2@MSC!1.02!15.07!MSC;;chr1:170632477..170632506,+!p6@PRRX1!0.99!8.74!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.28!NFIX;;chr11:46299539..46299620,+!p2@CREB3L1!0.95!13.80!CREB3L1;;chr5:139492456..139492489,+!p7@PURA!0.95!7.98!PURA;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.46!FOXD1;;chr9:132427972..132428056,+!p1@PRRX2!0.93!10.00!PRRX2;;chr7:44143925..44143970,+!p1@AEBP1!0.90!161.58!AEBP1;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.17!TWIST2;;chr3:141087393..141087426,+!p3@ZBTB38!0.88!27.61!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!0.88!18.49!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.87!10.00!ZBTB38;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.46!PRRX2;;chr3:25470156..25470227,+!p2@RARB!0.87!6.33!RARB;;chr19:47523058..47523114,+!p1@NPAS1!0.87!6.33!NPAS1;;chr21:38071403..38071428,+!p2@SIM2!0.87!6.33!SIM2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.11!TWIST1;;chr11:65686802..65686818,+!p6@DRAP1!0.86!11.14!DRAP1;;chr18:53068911..53068935,-!p4@TCF4!0.86!7.09!TCF4;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.20!PRRX1;;chr1:158979872..158979898,+!p3@IFI16!0.83!18.61!IFI16;;chr2:239756739..239756755,+!p2@TWIST2!0.83!10.26!TWIST2;;chr7:44143997..44144008,+!p3@AEBP1!0.82!7.22!AEBP1;;chr19:50432453..50432468,+!p1@ATF5!0.80!326.20!ATF5;;chr1:170632439..170632465,+!p11@PRRX1!0.80!5.32!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.80!5.32!TBX20;;chr10:63809013..63809041,+!p3@ARID5B!0.77!29.88!ARID5B;;chr11:65667884..65667895,-!p2@FOSL1!0.77!20.77!FOSL1;;chr12:66218212..66218244,+!p5@HMGA2!0.77!7.47!HMGA2;;chr8:72756063..72756125,-!p1@MSC!0.76!10.13!MSC;;chr3:168864315..168864339,-!p2@MECOM!0.76!8.10!MECOM;;chr1:170632723..170632739,+!p8@PRRX1!0.76!4.81!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.75!21.65!ZFHX4;;chr12:66218598..66218645,+!p2@HMGA2!0.74!22.67!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.48!GATA6;;chr18:19749353..19749367,+!p4@GATA6!0.74!4.56!GATA6;;chr5:72743793..72743855,-!p4@FOXD1!0.73!5.19!FOXD1;;chr15:80843484..80843499,+!p5@ARNT2!0.73!4.43!ARNT2;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.75!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.72!8.23!AEBP1;;chr5:72744445..72744466,-!p2@FOXD1!0.71!7.34!FOXD1;;chr3:141105705..141105770,+!p4@ZBTB38!0.71!5.19!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!0.70!6.20!MSC;;chr10:131762504..131762555,-!p1@EBF3!0.70!4.05!EBF3;;chr11:65687222..65687240,+!p7@DRAP1!0.69!5.19!DRAP1;;chr5:142780189..142780223,-!p6@NR3C1!0.69!3.93!NR3C1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.69!3.93!RUNX1T1;;chr15:67418177..67418204,+!p9@SMAD3!0.69!3.93!SMAD3;;chr15:96869255..96869291,+!p6@NR2F2!0.68!7.47!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.68!3.80!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.68!3.80!FOXC2;;chr3:141087339..141087387,+!p2@ZBTB38!0.67!43.18!ZBTB38;;chr13:45151259..45151326,-!p2@TSC22D1!0.67!25.33!TSC22D1;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.12!DRAP1;;chr1:158979851..158979865,+!p5@IFI16!0.67!8.86!IFI16;;chr12:80085061..80085119,-!p6@PAWR!0.67!6.33!PAWR;;chr11:125034640..125034655,+!p1@PKNOX2!0.67!3.67!PKNOX2;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.67!ZNF668;;chr3:157823517..157823562,-!p1@SHOX2!0.66!3.93!SHOX2;;chr6:134210243..134210257,+!p1@TCF21!0.66!3.55!TCF21;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.94!DRAP1;;chr6:10415276..10415341,-!p2@TFAP2A!0.65!4.43!TFAP2A;;chr6:85473156..85473210,-!p2@TBX18!0.65!4.43!TBX18;;chr13:45150455..45150472,-!p8@TSC22D1!0.65!3.42!TSC22D1;;chr10:63809106..63809127,+!p1@ARID5B!0.64!54.07!ARID5B;;chr15:67418047..67418093,+!p4@SMAD3!0.64!4.43!SMAD3;;chr1:158979792..158979814,+!p2@IFI16!0.63!36.85!IFI16;;chr15:67418119..67418162,+!p5@SMAD3!0.63!3.67!SMAD3;;chr1:170633100..170633112,+!p19@PRRX1!0.63!3.29!PRRX1;;chr7:1577899..1577943,+!p3@MAFK!0.63!3.29!MAFK;;chr3:169381420..169381535,-!p1@MECOM!0.62!3.80!MECOM;;chr8:11561684..11561751,+!p1@GATA4!0.62!3.17!GATA4;;chr1:119530493..119530572,-!p1@TBX15!0.62!3.17!TBX15;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.63!ARID5B;;chr7:19157043..19157088,-!p2@TWIST1!0.61!8.74!TWIST1;;chr12:66218183..66218209,+!p4@HMGA2!0.61!6.58!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.61!3.04!HMGA2;;chr1:170632137..170632172,+!p10@PRRX1!0.61!3.04!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.61!3.04!PRRX1;;chr2:85981107..85981120,+!p3@ATOH8!0.61!3.04!ATOH8;;chr4:174451350..174451363,-!p3@HAND2!0.61!3.04!HAND2;;chr8:72755987..72756002,-!p7@MSC!0.61!3.04!MSC;;chr6:34204921..34204939,+!p3@HMGA1!0.60!108.40!HMGA1;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.82!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.60!18.36!HIF1A;;chr1:151032860..151032918,+!p1@MLLT11!0.59!41.66!MLLT11;;chr12:27485762..27485776,+!p3@ARNTL2!0.59!8.86!ARNTL2;;chr9:14083467..14083483,-!p4@NFIB!0.59!8.10!NFIB;;chr6:85474299..85474324,-!p1@TBX18!0.59!5.70!TBX18;;chr6:10412600..10412637,-!p1@TFAP2A!0.59!5.32!TFAP2A;;chr15:96876966..96877017,+!p12@NR2F2!0.59!4.43!NR2F2;;chr6:1389789..1389821,+!p1@FOXF2!0.59!4.31!FOXF2;;chr19:13135582..13135600,+!p3@NFIX!0.59!2.91!NFIX;;chr1:170632115..170632136,+!p9@PRRX1!0.59!2.91!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.59!2.91!PRRX1;;chr16:67881588..67881612,-!p2@CENPT!0.58!4.05!CENPT;;chr6:135502501..135502546,+!p1@MYB!0.58!3.55!MYB;;chr1:170632683..170632696,+!p12@PRRX1!0.58!2.79!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!0.57!31.40!HMGA2;;chr9:14082760..14082775,-!p6@NFIB!0.57!4.94!NFIB;;chr19:47922750..47922795,-!p1@MEIS3!0.57!4.94!MEIS3;;chr5:134369905..134369972,-!p1@PITX1!0.57!4.56!PITX1;;chr19:16435625..16435682,+!p1@KLF2!0.56!106.37!KLF2;;chr2:231280954..231280965,+!p2@SP100!0.56!5.45!SP100;;chr19:16435705..16435726,+!p3@KLF2!0.56!2.66!KLF2;;chr19:16435735..16435773,+!p4@KLF2!0.56!2.66!KLF2;;chr19:13106214..13106382,+!p1@NFIX!0.55!74.46!NFIX;;chr3:25469724..25469773,+!p1@RARB!0.55!4.05!RARB;;chr3:21792682..21792720,-!p1@ZNF385D!0.55!2.53!ZNF385D;;chr9:14314522..14314556,-!p3@NFIB!0.54!6.84!NFIB;;chr15:96874145..96874166,+!p7@NR2F2!0.54!5.45!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.54!3.67!NR2F2;;chr19:50435736..50435781,+!p3@ATF5!0.54!3.67!ATF5;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.60!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!0.53!23.68!MEF2C;;chr11:65686952..65686975,+!p5@DRAP1!0.53!16.34!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.53!9.24!AHRR;;chr3:21792585..21792625,-!p2@ZNF385D!0.53!2.79!ZNF385D;;chr11:125034605..125034636,+!p2@PKNOX2!0.53!2.41!PKNOX2;;chr12:80085120..80085156,-!p14@PAWR!0.53!2.41!PAWR;;chr15:67430381..67430396,+!p21@SMAD3!0.53!2.41!SMAD3;;chr1:170632028..170632043,+!p20@PRRX1!0.53!2.41!PRRX1;;chr2:191878874..191878938,-!p1@STAT1!0.52!162.47!STAT1;;chr10:77161504..77161530,-!p1@ZNF503!0.52!39.89!ZNF503;;chr2:85980951..85981004,+!p1@ATOH8!0.52!4.31!ATOH8;;chr2:85981222..85981259,+!p2@ATOH8!0.52!4.31!ATOH8;;chr2:119604456..119604501,-!p2@EN1!0.52!2.28!EN1;;chr11:46333934..46333963,+!p5@CREB3L1!0.52!2.28!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!0.52!2.28!IRX2;;chr8:72756380..72756427,-!p8@MSC!0.52!2.28!MSC;;chr8:93074848..93074871,-!p3@RUNX1T1!0.52!2.28!RUNX1T1;;chr19:13136241..13136258,+!p7@NFIX!0.51!3.29!NFIX;;chr6:144329384..144329405,-!p1@PLAGL1!0.50!32.92!PLAGL1;;chr6:19837592..19837621,+!p1@ID4!0.50!16.97!ID4;;chr9:14314131..14314147,-!p2@NFIB!0.50!15.58!NFIB;;chr2:178128149..178128198,-!p2@NFE2L2!0.50!14.94!NFE2L2;;chr15:96869292..96869320,+!p15@NR2F2!0.50!3.42!NR2F2;;chr9:16705069..16705086,-!p3@BNC2!0.50!2.15!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!0.50!2.15!ZNF323;;chr7:150945865..150945896,-!p4@SMARCD3!0.50!2.15!SMARCD3;;chr3:141121871..141121885,+!p13@ZBTB38!0.50!2.15!ZBTB38;;chr3:169381183..169381205,-!p4@MECOM!0.50!2.15!MECOM;;chr12:66218923..66218934,+!p14@HMGA2!0.50!2.15!HMGA2;;chr7:150945754..150945789,-!p2@SMARCD3!0.49!8.10!SMARCD3;;chr10:63809134..63809145,+!p6@ARID5B!0.49!5.83!ARID5B;;chr12:80084137..80084165,-!p10@PAWR!0.49!2.91!PAWR;;chr15:37391588..37391604,-!p11@MEIS2!0.49!2.91!MEIS2;;chr8:72756213..72756243,-!p5@MSC!0.49!2.91!MSC;;chr3:168865194..168865245,-!p3@MECOM!0.49!2.91!MECOM;;chr20:48599506..48599526,+!p1@SNAI1!0.48!17.22!SNAI1;;chr17:1959369..1959388,+!p2@HIC1!0.48!6.58!HIC1;;chr10:63809077..63809089,+!p5@ARID5B!0.48!5.32!ARID5B;;chr9:14313893..14313908,-!p7@NFIB!0.48!3.29!NFIB;;chr8:72756023..72756055,-!p6@MSC!0.48!2.66!MSC;;chr5:142780237..142780261,-!p7@NR3C1!0.48!2.03!NR3C1;;chr11:46299443..46299459,+!p4@CREB3L1!0.48!2.03!CREB3L1;;chr3:141121820..141121838,+!p9@ZBTB38!0.48!2.03!ZBTB38;;chr7:77428149..77428220,+!p1@PHTF2!0.47!26.97!PHTF2;;chr6:126102292..126102329,+!p3@NCOA7!0.47!8.23!NCOA7;;chr19:13134457..13134462,+!p5@NFIX!0.47!4.05!NFIX;;chr1:151032922..151032951,+!p2@MLLT11!0.47!3.80!MLLT11;;chr12:80085255..80085284,-!p9@PAWR!0.47!3.17!PAWR;;chr11:46299186..46299195,+!p3@CREB3L1!0.47!2.28!CREB3L1;;chr3:52001448..52001478,-!p2@PCBP4!0.46!35.96!PCBP4;;chr12:96588368..96588394,+!p3@ELK3!0.46!6.33!ELK3;;chr8:106330656..106330684,+!p1@ZFPM2!0.46!6.20!ZFPM2;;chr13:45151403..45151433,-!p5@TSC22D1!0.46!5.07!TSC22D1;;chr1:158979922..158979933,+!p13@IFI16!0.46!1.90!IFI16;;chr1:170632310..1706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|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.70!55.84!PRRX1;;chr8:55370487..55370503,+!p1@SOX17!1.59!37.48!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!1.56!47.49!PRRX1;;chr2:19558373..19558392,-!p1@OSR1!1.53!87.25!OSR1;;chr1:170633262..170633285,+!p3@PRRX1!1.43!29.25!PRRX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.36!21.91!ZBED1;;chr21:38071430..38071456,+!p1@SIM2!1.33!20.26!SIM2;;chr18:19749541..19749557,+!p1@GATA6!1.26!53.44!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.25!24.06!GATA6;;chr20:30433396..30433414,-!p1@FOXS1!1.25!16.59!FOXS1;;chr4:174450089..174450153,-!p2@HAND2!1.24!16.46!HAND2;;chr4:174451370..174451387,-!p1@HAND2!1.14!12.92!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.13!64.08!CREB3L1;;chr1:170633058..170633084,+!p5@PRRX1!1.13!12.41!PRRX1;;chr1:170632959..170632987,+!p4@PRRX1!1.12!13.42!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.06!11.90!MSC;;chr16:86600426..86600441,+!p1@FOXC2!1.05!25.71!FOXC2;;chr15:42749722..42749739,-!p2@ZFP106!1.02!17.10!ZFP106;;chr8:72756667..72756736,-!p2@MSC!1.02!15.07!MSC;;chr1:170632477..170632506,+!p6@PRRX1!0.99!8.74!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!0.97!12.28!NFIX;;chr11:46299539..46299620,+!p2@CREB3L1!0.95!13.80!CREB3L1;;chr5:139492456..139492489,+!p7@PURA!0.95!7.98!PURA;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.46!FOXD1;;chr9:132427972..132428056,+!p1@PRRX2!0.93!10.00!PRRX2;;chr7:44143925..44143970,+!p1@AEBP1!0.90!161.58!AEBP1;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.17!TWIST2;;chr3:141087393..141087426,+!p3@ZBTB38!0.88!27.61!ZBTB38;;chr12:66218255..66218304,+!p3@HMGA2!0.88!18.49!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!0.87!10.00!ZBTB38;;chr9:132427883..132427951,+!p2@PRRX2!0.87!6.46!PRRX2;;chr3:25470156..25470227,+!p2@RARB!0.87!6.33!RARB;;chr19:47523058..47523114,+!p1@NPAS1!0.87!6.33!NPAS1;;chr21:38071403..38071428,+!p2@SIM2!0.87!6.33!SIM2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.11!TWIST1;;chr11:65686802..65686818,+!p6@DRAP1!0.86!11.14!DRAP1;;chr18:53068911..53068935,-!p4@TCF4!0.86!7.09!TCF4;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.20!PRRX1;;chr1:158979872..158979898,+!p3@IFI16!0.83!18.61!IFI16;;chr2:239756739..239756755,+!p2@TWIST2!0.83!10.26!TWIST2;;chr7:44143997..44144008,+!p3@AEBP1!0.82!7.22!AEBP1;;chr19:50432453..50432468,+!p1@ATF5!0.80!326.20!ATF5;;chr1:170632439..170632465,+!p11@PRRX1!0.80!5.32!PRRX1;;chr7:35293685..35293718,-!p1@TBX20!0.80!5.32!TBX20;;chr10:63809013..63809041,+!p3@ARID5B!0.77!29.88!ARID5B;;chr11:65667884..65667895,-!p2@FOSL1!0.77!20.77!FOSL1;;chr12:66218212..66218244,+!p5@HMGA2!0.77!7.47!HMGA2;;chr8:72756063..72756125,-!p1@MSC!0.76!10.13!MSC;;chr3:168864315..168864339,-!p2@MECOM!0.76!8.10!MECOM;;chr1:170632723..170632739,+!p8@PRRX1!0.76!4.81!PRRX1;;chr8:77593474..77593612,+!p1@ZFHX4!0.75!21.65!ZFHX4;;chr12:66218598..66218645,+!p2@HMGA2!0.74!22.67!HMGA2;;chr18:19749517..19749531,+!p3@GATA6!0.74!8.48!GATA6;;chr18:19749353..19749367,+!p4@GATA6!0.74!4.56!GATA6;;chr5:72743793..72743855,-!p4@FOXD1!0.73!5.19!FOXD1;;chr15:80843484..80843499,+!p5@ARNT2!0.73!4.43!ARNT2;;chr11:65686732..65686756,+!p2@DRAP1!0.72!19.75!DRAP1;;chr7:44143978..44143989,+!p2@AEBP1!0.72!8.23!AEBP1;;chr5:72744445..72744466,-!p2@FOXD1!0.71!7.34!FOXD1;;chr3:141105705..141105770,+!p4@ZBTB38!0.71!5.19!ZBTB38;;chr8:72756267..72756296,-!p4@MSC!0.70!6.20!MSC;;chr10:131762504..131762555,-!p1@EBF3!0.70!4.05!EBF3;;chr11:65687222..65687240,+!p7@DRAP1!0.69!5.19!DRAP1;;chr5:142780189..142780223,-!p6@NR3C1!0.69!3.93!NR3C1;;chr8:93074803..93074845,-!p1@RUNX1T1!0.69!3.93!RUNX1T1;;chr15:67418177..67418204,+!p9@SMAD3!0.69!3.93!SMAD3;;chr15:96869255..96869291,+!p6@NR2F2!0.68!7.47!NR2F2;;chr15:67430351..67430366,+!p10@SMAD3!0.68!3.80!SMAD3;;chr16:86600870..86600921,+!p2@FOXC2!0.68!3.80!FOXC2;;chr3:141087339..141087387,+!p2@ZBTB38!0.67!43.18!ZBTB38;;chr13:45151259..45151326,-!p2@TSC22D1!0.67!25.33!TSC22D1;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.12!DRAP1;;chr1:158979851..158979865,+!p5@IFI16!0.67!8.86!IFI16;;chr12:80085061..80085119,-!p6@PAWR!0.67!6.33!PAWR;;chr11:125034640..125034655,+!p1@PKNOX2!0.67!3.67!PKNOX2;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.67!ZNF668;;chr3:157823517..157823562,-!p1@SHOX2!0.66!3.93!SHOX2;;chr6:134210243..134210257,+!p1@TCF21!0.66!3.55!TCF21;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.94!DRAP1;;chr6:10415276..10415341,-!p2@TFAP2A!0.65!4.43!TFAP2A;;chr6:85473156..85473210,-!p2@TBX18!0.65!4.43!TBX18;;chr13:45150455..45150472,-!p8@TSC22D1!0.65!3.42!TSC22D1;;chr10:63809106..63809127,+!p1@ARID5B!0.64!54.07!ARID5B;;chr15:67418047..67418093,+!p4@SMAD3!0.64!4.43!SMAD3;;chr1:158979792..158979814,+!p2@IFI16!0.63!36.85!IFI16;;chr15:67418119..67418162,+!p5@SMAD3!0.63!3.67!SMAD3;;chr1:170633100..170633112,+!p19@PRRX1!0.63!3.29!PRRX1;;chr7:1577899..1577943,+!p3@MAFK!0.63!3.29!MAFK;;chr3:169381420..169381535,-!p1@MECOM!0.62!3.80!MECOM;;chr8:11561684..11561751,+!p1@GATA4!0.62!3.17!GATA4;;chr1:119530493..119530572,-!p1@TBX15!0.62!3.17!TBX15;;chr10:63853436..63853442,+!p4@ARID5B!0.61!19.63!ARID5B;;chr7:19157043..19157088,-!p2@TWIST1!0.61!8.74!TWIST1;;chr12:66218183..66218209,+!p4@HMGA2!0.61!6.58!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.61!3.04!HMGA2;;chr1:170632137..170632172,+!p10@PRRX1!0.61!3.04!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.61!3.04!PRRX1;;chr2:85981107..85981120,+!p3@ATOH8!0.61!3.04!ATOH8;;chr4:174451350..174451363,-!p3@HAND2!0.61!3.04!HAND2;;chr8:72755987..72756002,-!p7@MSC!0.61!3.04!MSC;;chr6:34204921..34204939,+!p3@HMGA1!0.60!108.40!HMGA1;;chr14:62162258..62162269,+!p2@HIF1A!0.60!34.82!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.60!18.36!HIF1A;;chr1:151032860..151032918,+!p1@MLLT11!0.59!41.66!MLLT11;;chr12:27485762..27485776,+!p3@ARNTL2!0.59!8.86!ARNTL2;;chr9:14083467..14083483,-!p4@NFIB!0.59!8.10!NFIB;;chr6:85474299..85474324,-!p1@TBX18!0.59!5.70!TBX18;;chr6:10412600..10412637,-!p1@TFAP2A!0.59!5.32!TFAP2A;;chr15:96876966..96877017,+!p12@NR2F2!0.59!4.43!NR2F2;;chr6:1389789..1389821,+!p1@FOXF2!0.59!4.31!FOXF2;;chr19:13135582..13135600,+!p3@NFIX!0.59!2.91!NFIX;;chr1:170632115..170632136,+!p9@PRRX1!0.59!2.91!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.59!2.91!PRRX1;;chr16:67881588..67881612,-!p2@CENPT!0.58!4.05!CENPT;;chr6:135502501..135502546,+!p1@MYB!0.58!3.55!MYB;;chr1:170632683..170632696,+!p12@PRRX1!0.58!2.79!PRRX1;;chr12:66218836..66218888,+!p1@HMGA2!0.57!31.40!HMGA2;;chr9:14082760..14082775,-!p6@NFIB!0.57!4.94!NFIB;;chr19:47922750..47922795,-!p1@MEIS3!0.57!4.94!MEIS3;;chr5:134369905..134369972,-!p1@PITX1!0.57!4.56!PITX1;;chr19:16435625..16435682,+!p1@KLF2!0.56!106.37!KLF2;;chr2:231280954..231280965,+!p2@SP100!0.56!5.45!SP100;;chr19:16435705..16435726,+!p3@KLF2!0.56!2.66!KLF2;;chr19:16435735..16435773,+!p4@KLF2!0.56!2.66!KLF2;;chr19:13106214..13106382,+!p1@NFIX!0.55!74.46!NFIX;;chr3:25469724..25469773,+!p1@RARB!0.55!4.05!RARB;;chr3:21792682..21792720,-!p1@ZNF385D!0.55!2.53!ZNF385D;;chr9:14314522..14314556,-!p3@NFIB!0.54!6.84!NFIB;;chr15:96874145..96874166,+!p7@NR2F2!0.54!5.45!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.54!3.67!NR2F2;;chr19:50435736..50435781,+!p3@ATF5!0.54!3.67!ATF5;;chr9:14314566..14314618,-!p1@NFIB!0.53!36.60!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!0.53!23.68!MEF2C;;chr11:65686952..65686975,+!p5@DRAP1!0.53!16.34!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.53!9.24!AHRR;;chr3:21792585..21792625,-!p2@ZNF385D!0.53!2.79!ZNF385D;;chr11:125034605..125034636,+!p2@PKNOX2!0.53!2.41!PKNOX2;;chr12:80085120..80085156,-!p14@PAWR!0.53!2.41!PAWR;;chr15:67430381..67430396,+!p21@SMAD3!0.53!2.41!SMAD3;;chr1:170632028..170632043,+!p20@PRRX1!0.53!2.41!PRRX1;;chr2:191878874..191878938,-!p1@STAT1!0.52!162.47!STAT1;;chr10:77161504..77161530,-!p1@ZNF503!0.52!39.89!ZNF503;;chr2:85980951..85981004,+!p1@ATOH8!0.52!4.31!ATOH8;;chr2:85981222..85981259,+!p2@ATOH8!0.52!4.31!ATOH8;;chr2:119604456..119604501,-!p2@EN1!0.52!2.28!EN1;;chr11:46333934..46333963,+!p5@CREB3L1!0.52!2.28!CREB3L1;;chr5:2751762..2751784,-!p1@IRX2!0.52!2.28!IRX2;;chr8:72756380..72756427,-!p8@MSC!0.52!2.28!MSC;;chr8:93074848..93074871,-!p3@RUNX1T1!0.52!2.28!RUNX1T1;;chr19:13136241..13136258,+!p7@NFIX!0.51!3.29!NFIX;;chr6:144329384..144329405,-!p1@PLAGL1!0.50!32.92!PLAGL1;;chr6:19837592..19837621,+!p1@ID4!0.50!16.97!ID4;;chr9:14314131..14314147,-!p2@NFIB!0.50!15.58!NFIB;;chr2:178128149..178128198,-!p2@NFE2L2!0.50!14.94!NFE2L2;;chr15:96869292..96869320,+!p15@NR2F2!0.50!3.42!NR2F2;;chr9:16705069..16705086,-!p3@BNC2!0.50!2.15!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!0.50!2.15!ZNF323;;chr7:150945865..150945896,-!p4@SMARCD3!0.50!2.15!SMARCD3;;chr3:141121871..141121885,+!p13@ZBTB38!0.50!2.15!ZBTB38;;chr3:169381183..169381205,-!p4@MECOM!0.50!2.15!MECOM;;chr12:66218923..66218934,+!p14@HMGA2!0.50!2.15!HMGA2;;chr7:150945754..150945789,-!p2@SMARCD3!0.49!8.10!SMARCD3;;chr10:63809134..63809145,+!p6@ARID5B!0.49!5.83!ARID5B;;chr12:80084137..80084165,-!p10@PAWR!0.49!2.91!PAWR;;chr15:37391588..37391604,-!p11@MEIS2!0.49!2.91!MEIS2;;chr8:72756213..72756243,-!p5@MSC!0.49!2.91!MSC;;chr3:168865194..168865245,-!p3@MECOM!0.49!2.91!MECOM;;chr20:48599506..48599526,+!p1@SNAI1!0.48!17.22!SNAI1;;chr17:1959369..1959388,+!p2@HIC1!0.48!6.58!HIC1;;chr10:63809077..63809089,+!p5@ARID5B!0.48!5.32!ARID5B;;chr9:14313893..14313908,-!p7@NFIB!0.48!3.29!NFIB;;chr8:72756023..72756055,-!p6@MSC!0.48!2.66!MSC;;chr5:142780237..142780261,-!p7@NR3C1!0.48!2.03!NR3C1;;chr11:46299443..46299459,+!p4@CREB3L1!0.48!2.03!CREB3L1;;chr3:141121820..141121838,+!p9@ZBTB38!0.48!2.03!ZBTB38;;chr7:77428149..77428220,+!p1@PHTF2!0.47!26.97!PHTF2;;chr6:126102292..126102329,+!p3@NCOA7!0.47!8.23!NCOA7;;chr19:13134457..13134462,+!p5@NFIX!0.47!4.05!NFIX;;chr1:151032922..151032951,+!p2@MLLT11!0.47!3.80!MLLT11;;chr12:80085255..80085284,-!p9@PAWR!0.47!3.17!PAWR;;chr11:46299186..46299195,+!p3@CREB3L1!0.47!2.28!CREB3L1;;chr3:52001448..52001478,-!p2@PCBP4!0.46!35.96!PCBP4;;chr12:96588368..96588394,+!p3@ELK3!0.46!6.33!ELK3;;chr8:106330656..106330684,+!p1@ZFPM2!0.46!6.20!ZFPM2;;chr13:45151403..45151433,-!p5@TSC22D1!0.46!5.07!TSC22D1;;chr1:158979922..158979933,+!p13@IFI16!0.46!1.90!IFI16;;chr1:170632310..1706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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002547;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000060;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000947;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001637;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004573;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 45:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Aortic%2520Adventitial%252c%2520donor1.CNhs10874.11245-116E3.hg38.nobarcode.ctss.bed.gz
|id=FF:11245-116E3
|id=FF:11245-116E3
|is_a=EFO:0002091;;FF:0000058
|is_a=EFO:0002091;;FF:0000058
|is_obsolete=
|is_obsolete=
|library_id=CNhs10874
|library_id=CNhs10874
|library_id_phase_based=1:CNhs10874
|library_id_phase_based=2:CNhs10874
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11245
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.TGACCA.11245
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11245
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.TGACCA.11245
|name=Fibroblast - Aortic Adventitial, donor1
|name=Fibroblast - Aortic Adventitial, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 66:
|profile_cagescan=NCig10042,,,
|profile_cagescan=NCig10042,,,
|profile_hcage=CNhs10874,LSID703,release008,COMPLETED
|profile_hcage=CNhs10874,LSID703,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10012,,,
|profile_srnaseq=SRhi10012,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 81:
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|sample_category=primary cells
Line 90: Line 107:
|top_motifs=HSF1,2:1.66203140516;NKX2-2,8:1.58804072824;HMGA1,2:1.57038882225;UFEwm:1.54939401058;TAL1_TCF{3,4,12}:1.44117962098;EVI1:1.42548437243;HOX{A5,B5}:1.3920468884;GCM1,2:1.35160650942;XBP1:1.27394104746;IKZF1:1.2386982981;HES1:1.19902139096;AIRE:1.18990596077;MYBL2:1.15608244003;CDC5L:1.12520460662;TEAD1:1.10530547396;KLF4:1.08015702966;NR3C1:1.07333172715;HMX1:1.06500850581;ALX4:1.01432525532;GLI1..3:0.985903970864;EBF1:0.973615367932;NFE2L1:0.959311290704;LHX3,4:0.958918542168;TLX1..3_NFIC{dimer}:0.950943005967;ZIC1..3:0.945645508004;SRF:0.943652895476;GATA4:0.872559839417;NFIX:0.866670211374;GTF2A1,2:0.831786119311;TFAP4:0.790034486893;EN1,2:0.789936205289;MAFB:0.789435899892;ZNF384:0.722275822454;NKX3-2:0.703412701458;FOXL1:0.691652275101;NKX3-1:0.689717386457;RXR{A,B,G}:0.674522456459;TP53:0.656068895833;ADNP_IRX_SIX_ZHX:0.651977758173;NFATC1..3:0.631897456259;HBP1_HMGB_SSRP1_UBTF:0.624576658476;ESR1:0.59933475573;ZNF238:0.592311735875;ZBTB6:0.57557441496;POU3F1..4:0.567751696675;SMAD1..7,9:0.549425291155;HOX{A4,D4}:0.509070039979;PRDM1:0.500308531206;TBX4,5:0.486033722775;SOX17:0.468046103878;ATF6:0.444735540111;GTF2I:0.433458570349;GZF1:0.428543709096;HAND1,2:0.427074664326;MAZ:0.406522479463;ZNF423:0.391393637594;ARID5B:0.378455919254;SOX2:0.37772391631;ZNF148:0.365449345706;MYB:0.362792670366;TBP:0.35910091631;MTE{core}:0.342103145605;POU5F1:0.30218089012;HIF1A:0.295856451247;YY1:0.283598367786;E2F1..5:0.276850890148;SOX{8,9,10}:0.276521372383;XCPE1{core}:0.271596518718;FOXD3:0.268682152436;GFI1:0.266639159145;TEF:0.25131740791;NANOG{mouse}:0.249444359213;PPARG:0.236306797344;ELK1,4_GABP{A,B1}:0.23254227545;MZF1:0.224168134221;NFE2L2:0.202248699307;ONECUT1,2:0.195680710747;HLF:0.174966886389;POU1F1:0.170228040453;MEF2{A,B,C,D}:0.164415204569;GFI1B:0.138527848856;HIC1:0.135729805655;PAX8:0.12784267563;RXRA_VDR{dimer}:0.113070584792;ZNF143:0.0997345530017;TFAP2B:0.0877573238222;bHLH_family:0.0801102101011;FOXO1,3,4:0.0790313248475;FOSL2:0.0751052998179;HOXA9_MEIS1:0.0722450633054;TLX2:0.0706927356884;NR6A1:0.0693093076282;NRF1:0.0541554544941;TOPORS:0.0431649023343;PATZ1:0.0378840123277;STAT2,4,6:0.0191283292012;FOX{I1,J2}:0.0165937773767;BACH2:0.0164084967749;SPZ1:0.0103151819425;STAT5{A,B}:-0.007218116883;TFDP1:-0.00764193257664;CEBPA,B_DDIT3:-0.00844093208864;LEF1_TCF7_TCF7L1,2:-0.00845011777584;REST:-0.0113132789592;NFY{A,B,C}:-0.0170630970806;FOS_FOS{B,L1}_JUN{B,D}:-0.03108314284;DBP:-0.035528666426;PAX6:-0.0387063120858;PAX5:-0.0632188795311;NHLH1,2:-0.0781562939326;AR:-0.0798264492067;HNF1A:-0.081860998486;MYFfamily:-0.0907160420533;TFCP2:-0.102857552338;MTF1:-0.133584207081;NFIL3:-0.156162578236;TGIF1:-0.164771028954;IKZF2:-0.170048800979;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.171774786451;NKX2-1,4:-0.172419077471;RREB1:-0.200055637501;ELF1,2,4:-0.21196503895;PDX1:-0.230474409861;NFE2:-0.254491676147;ZFP161:-0.256550678277;IRF1,2:-0.268106647309;GATA6:-0.281325524474;STAT1,3:-0.282104085567;RFX1:-0.298765978943;FOXM1:-0.316237039413;VSX1,2:-0.31820336743;LMO2:-0.330801595333;MED-1{core}:-0.336802624744;DMAP1_NCOR{1,2}_SMARC:-0.346241471911;RUNX1..3:-0.35223028786;EGR1..3:-0.352352120473;HNF4A_NR2F1,2:-0.353983449043;NR5A1,2:-0.357346751563;TFAP2{A,C}:-0.377624160239;SPI1:-0.377804411288;SOX5:-0.392765462321;PAX3,7:-0.395867339902;JUN:-0.399238593699;AHR_ARNT_ARNT2:-0.406228071083;SP1:-0.420100107634;NFKB1_REL_RELA:-0.427483785941;IRF7:-0.430046839406;T:-0.437022987629;EP300:-0.437514558592;CREB1:-0.445570000644;PAX1,9:-0.476967956899;SPIB:-0.498342645278;FOXP3:-0.506286008463;SREBF1,2:-0.510051878418;ETS1,2:-0.513548179398;FOXA2:-0.517203716435;NKX6-1,2:-0.523175286882;FOX{D1,D2}:-0.525083817957;PRRX1,2:-0.540090778835;BREu{core}:-0.553591557353;BPTF:-0.565644865938;SNAI1..3:-0.567739790869;ATF2:-0.569803373254;PBX1:-0.570214596483;PAX4:-0.57782428841;CRX:-0.606981615904;PAX2:-0.631981305803;ATF5_CREB3:-0.640609956145;OCT4_SOX2{dimer}:-0.645731013579;HOX{A6,A7,B6,B7}:-0.650133065897;ESRRA:-0.656563740496;CDX1,2,4:-0.704058958929;ZBTB16:-0.711583076449;NANOG:-0.73603454417;FOXP1:-0.803204760255;ZEB1:-0.818968539764;RBPJ:-0.843520782818;PITX1..3:-0.861030052081;ATF4:-0.863126304835;NR1H4:-0.865189253046;POU2F1..3:-0.895261924804;FOXN1:-0.989071420051;ALX1:-0.990856573458;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01324241291;RFX2..5_RFXANK_RFXAP:-1.03146763582;CUX2:-1.04879187847;POU6F1:-1.05630297732;NKX2-3_NKX2-5:-1.11084497829;MYOD1:-1.12081588629;FOX{F1,F2,J1}:-1.3494191269;FOXQ1:-1.35862952278;RORA:-1.40960348103
|top_motifs=HSF1,2:1.66203140516;NKX2-2,8:1.58804072824;HMGA1,2:1.57038882225;UFEwm:1.54939401058;TAL1_TCF{3,4,12}:1.44117962098;EVI1:1.42548437243;HOX{A5,B5}:1.3920468884;GCM1,2:1.35160650942;XBP1:1.27394104746;IKZF1:1.2386982981;HES1:1.19902139096;AIRE:1.18990596077;MYBL2:1.15608244003;CDC5L:1.12520460662;TEAD1:1.10530547396;KLF4:1.08015702966;NR3C1:1.07333172715;HMX1:1.06500850581;ALX4:1.01432525532;GLI1..3:0.985903970864;EBF1:0.973615367932;NFE2L1:0.959311290704;LHX3,4:0.958918542168;TLX1..3_NFIC{dimer}:0.950943005967;ZIC1..3:0.945645508004;SRF:0.943652895476;GATA4:0.872559839417;NFIX:0.866670211374;GTF2A1,2:0.831786119311;TFAP4:0.790034486893;EN1,2:0.789936205289;MAFB:0.789435899892;ZNF384:0.722275822454;NKX3-2:0.703412701458;FOXL1:0.691652275101;NKX3-1:0.689717386457;RXR{A,B,G}:0.674522456459;TP53:0.656068895833;ADNP_IRX_SIX_ZHX:0.651977758173;NFATC1..3:0.631897456259;HBP1_HMGB_SSRP1_UBTF:0.624576658476;ESR1:0.59933475573;ZNF238:0.592311735875;ZBTB6:0.57557441496;POU3F1..4:0.567751696675;SMAD1..7,9:0.549425291155;HOX{A4,D4}:0.509070039979;PRDM1:0.500308531206;TBX4,5:0.486033722775;SOX17:0.468046103878;ATF6:0.444735540111;GTF2I:0.433458570349;GZF1:0.428543709096;HAND1,2:0.427074664326;MAZ:0.406522479463;ZNF423:0.391393637594;ARID5B:0.378455919254;SOX2:0.37772391631;ZNF148:0.365449345706;MYB:0.362792670366;TBP:0.35910091631;MTE{core}:0.342103145605;POU5F1:0.30218089012;HIF1A:0.295856451247;YY1:0.283598367786;E2F1..5:0.276850890148;SOX{8,9,10}:0.276521372383;XCPE1{core}:0.271596518718;FOXD3:0.268682152436;GFI1:0.266639159145;TEF:0.25131740791;NANOG{mouse}:0.249444359213;PPARG:0.236306797344;ELK1,4_GABP{A,B1}:0.23254227545;MZF1:0.224168134221;NFE2L2:0.202248699307;ONECUT1,2:0.195680710747;HLF:0.174966886389;POU1F1:0.170228040453;MEF2{A,B,C,D}:0.164415204569;GFI1B:0.138527848856;HIC1:0.135729805655;PAX8:0.12784267563;RXRA_VDR{dimer}:0.113070584792;ZNF143:0.0997345530017;TFAP2B:0.0877573238222;bHLH_family:0.0801102101011;FOXO1,3,4:0.0790313248475;FOSL2:0.0751052998179;HOXA9_MEIS1:0.0722450633054;TLX2:0.0706927356884;NR6A1:0.0693093076282;NRF1:0.0541554544941;TOPORS:0.0431649023343;PATZ1:0.0378840123277;STAT2,4,6:0.0191283292012;FOX{I1,J2}:0.0165937773767;BACH2:0.0164084967749;SPZ1:0.0103151819425;STAT5{A,B}:-0.007218116883;TFDP1:-0.00764193257664;CEBPA,B_DDIT3:-0.00844093208864;LEF1_TCF7_TCF7L1,2:-0.00845011777584;REST:-0.0113132789592;NFY{A,B,C}:-0.0170630970806;FOS_FOS{B,L1}_JUN{B,D}:-0.03108314284;DBP:-0.035528666426;PAX6:-0.0387063120858;PAX5:-0.0632188795311;NHLH1,2:-0.0781562939326;AR:-0.0798264492067;HNF1A:-0.081860998486;MYFfamily:-0.0907160420533;TFCP2:-0.102857552338;MTF1:-0.133584207081;NFIL3:-0.156162578236;TGIF1:-0.164771028954;IKZF2:-0.170048800979;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.171774786451;NKX2-1,4:-0.172419077471;RREB1:-0.200055637501;ELF1,2,4:-0.21196503895;PDX1:-0.230474409861;NFE2:-0.254491676147;ZFP161:-0.256550678277;IRF1,2:-0.268106647309;GATA6:-0.281325524474;STAT1,3:-0.282104085567;RFX1:-0.298765978943;FOXM1:-0.316237039413;VSX1,2:-0.31820336743;LMO2:-0.330801595333;MED-1{core}:-0.336802624744;DMAP1_NCOR{1,2}_SMARC:-0.346241471911;RUNX1..3:-0.35223028786;EGR1..3:-0.352352120473;HNF4A_NR2F1,2:-0.353983449043;NR5A1,2:-0.357346751563;TFAP2{A,C}:-0.377624160239;SPI1:-0.377804411288;SOX5:-0.392765462321;PAX3,7:-0.395867339902;JUN:-0.399238593699;AHR_ARNT_ARNT2:-0.406228071083;SP1:-0.420100107634;NFKB1_REL_RELA:-0.427483785941;IRF7:-0.430046839406;T:-0.437022987629;EP300:-0.437514558592;CREB1:-0.445570000644;PAX1,9:-0.476967956899;SPIB:-0.498342645278;FOXP3:-0.506286008463;SREBF1,2:-0.510051878418;ETS1,2:-0.513548179398;FOXA2:-0.517203716435;NKX6-1,2:-0.523175286882;FOX{D1,D2}:-0.525083817957;PRRX1,2:-0.540090778835;BREu{core}:-0.553591557353;BPTF:-0.565644865938;SNAI1..3:-0.567739790869;ATF2:-0.569803373254;PBX1:-0.570214596483;PAX4:-0.57782428841;CRX:-0.606981615904;PAX2:-0.631981305803;ATF5_CREB3:-0.640609956145;OCT4_SOX2{dimer}:-0.645731013579;HOX{A6,A7,B6,B7}:-0.650133065897;ESRRA:-0.656563740496;CDX1,2,4:-0.704058958929;ZBTB16:-0.711583076449;NANOG:-0.73603454417;FOXP1:-0.803204760255;ZEB1:-0.818968539764;RBPJ:-0.843520782818;PITX1..3:-0.861030052081;ATF4:-0.863126304835;NR1H4:-0.865189253046;POU2F1..3:-0.895261924804;FOXN1:-0.989071420051;ALX1:-0.990856573458;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01324241291;RFX2..5_RFXANK_RFXAP:-1.03146763582;CUX2:-1.04879187847;POU6F1:-1.05630297732;NKX2-3_NKX2-5:-1.11084497829;MYOD1:-1.12081588629;FOX{F1,F2,J1}:-1.3494191269;FOXQ1:-1.35862952278;RORA:-1.40960348103
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11245-116E3;search_select_hide=table117:FF:11245-116E3
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Fibroblast - Aortic Adventitial, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10874
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueaorta
dev stage68 years old adult
sexfemale
age68
cell typefibroblast
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005860
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10874 CAGE DRX008240 DRR009112
Accession ID Hg19

Library idBAMCTSS
CNhs10874 DRZ000537 DRZ001922
Accession ID Hg38

Library idBAMCTSS
CNhs10874 DRZ011887 DRZ013272
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10042downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005860
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.TGACCA sRNA-Seq DRX037185 DRR041551
Accession ID Hg19

Library idBAMCTSS
SRhi10012.TGACCA DRZ007193


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0308
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.0259
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.658
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.137
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.105
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0518
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.33
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0475
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0426
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.098
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.152
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00935
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.098
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0292
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0339
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.148
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.261
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0518
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.826
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.29
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.499
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.774
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.591
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.692
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10874

Jaspar motifP-value
MA0002.20.123
MA0003.10.955
MA0004.10.0686
MA0006.10.0704
MA0007.10.797
MA0009.10.286
MA0014.10.452
MA0017.10.151
MA0018.26.68389e-7
MA0019.10.456
MA0024.10.926
MA0025.10.0426
MA0027.10.705
MA0028.10.886
MA0029.10.318
MA0030.10.0933
MA0031.10.074
MA0035.20.388
MA0038.10.224
MA0039.20.039
MA0040.10.806
MA0041.10.665
MA0042.10.913
MA0043.11.40105e-4
MA0046.10.0816
MA0047.20.363
MA0048.10.0257
MA0050.10.00607
MA0051.10.214
MA0052.10.312
MA0055.10.447
MA0057.10.327
MA0058.10.0238
MA0059.10.76
MA0060.10.0647
MA0061.10.0304
MA0062.23.90044e-4
MA0065.20.303
MA0066.10.45
MA0067.18.83091e-4
MA0068.10.72
MA0069.10.222
MA0070.10.937
MA0071.10.342
MA0072.10.257
MA0073.10.799
MA0074.10.897
MA0076.10.297
MA0077.10.63
MA0078.10.797
MA0079.20.669
MA0080.25.43151e-8
MA0081.10.0342
MA0083.10.0275
MA0084.10.0838
MA0087.10.231
MA0088.10.702
MA0090.17.04462e-5
MA0091.10.123
MA0092.10.0501
MA0093.10.0783
MA0099.20.361
MA0100.10.927
MA0101.19.17684e-4
MA0102.20.0039
MA0103.10.00242
MA0104.20.0415
MA0105.10.638
MA0106.10.163
MA0107.10.00149
MA0108.20.445
MA0111.10.086
MA0112.20.0714
MA0113.10.503
MA0114.10.0546
MA0115.10.0351
MA0116.10.219
MA0117.10.485
MA0119.10.0633
MA0122.10.72
MA0124.10.762
MA0125.10.869
MA0131.10.895
MA0135.10.167
MA0136.19.60864e-9
MA0137.20.777
MA0138.20.843
MA0139.10.494
MA0140.10.626
MA0141.10.357
MA0142.10.346
MA0143.10.699
MA0144.10.736
MA0145.10.544
MA0146.10.149
MA0147.10.284
MA0148.10.412
MA0149.10.89
MA0150.10.069
MA0152.10.0061
MA0153.10.224
MA0154.10.428
MA0155.10.397
MA0156.13.10264e-5
MA0157.10.641
MA0159.10.535
MA0160.10.0117
MA0162.10.0353
MA0163.10.0172
MA0164.10.937
MA0258.10.912
MA0259.10.356



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10874

Novel motifP-value
10.9
100.538
1000.735
1010.508
1020.295
1030.277
1040.878
1050.156
1060.578
1070.0835
1080.813
1090.286
110.735
1100.729
1110.457
1120.949
1130.00468
1140.471
1150.0756
1160.104
1170.981
1180.322
1190.554
120.182
1200.184
1210.923
1220.101
1232.27635e-4
1240.0798
1250.948
1260.26
1270.0952
1280.809
1290.692
130.892
1300.622
1310.342
1320.764
1330.501
1340.647
1350.867
1360.221
1370.243
1380.0842
1390.801
140.14
1400.517
1410.903
1420.692
1430.754
1440.857
1450.267
1460.448
1470.128
1480.551
1490.0121
150.52
1500.0388
1510.456
1520.0828
1530.681
1540.935
1550.00345
1560.425
1570.096
1580.00212
1590.167
160.0363
1600.555
1610.834
1620.894
1630.9
1640.331
1650.612
1660.31
1670.757
1680.631
1690.254
170.628
180.199
190.0165
20.599
200.657
210.0673
220.608
230.675
240.677
250.359
260.79
270.894
280.248
290.309
30.729
300.458
310.66
326.11409e-11
330.866
340.694
350.687
360.0779
370.251
380.328
390.266
40.444
400.297
410.783
420.728
430.66
440.106
450.474
460.537
470.788
480.832
490.125
50.897
500.946
510.732
520.832
530.0691
540.905
550.243
560.653
570.955
580.238
590.268
60.284
600.645
610.591
620.743
630.547
640.592
650.657
660.703
670.721
680.876
690.606
70.47
700.797
710.301
720.957
730.0184
740.0721
750.394
760.313
770.0559
780.344
790.00357
80.217
800.497
810.793
820.984
830.75
840.418
850.965
860.607
870.017
880.608
890.0765
90.933
900.646
910.673
920.502
930.487
940.85
950.319
960.433
970.572
980.104
990.0075



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10874


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
1000306 (fibroblast of tunica adventitia of artery)
0002547 (fibroblast of the aortic adventitia)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000947 (aorta)
0001637 (artery)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000055 (vessel)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0004573 (systemic artery)
0003509 (arterial blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0004797 (blood vessel layer)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0000415 (artery wall)
0007240 (tunica adventitia of artery)
0005742 (adventitia)
0005734 (tunica adventitia of blood vessel)
0004664 (aorta tunica adventitia)
0004535 (cardiovascular system)
0004571 (systemic arterial system)
0010191 (aortic system)
0004572 (arterial system)
0004537 (blood vasculature)
0001009 (circulatory system)
0004663 (aorta wall)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000058 (human fibroblast of the aortic adventitia sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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