FF:10858-111G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004863 | |||
|accession_numbers=CAGE;DRX007951;DRR008823;DRZ000248;DRZ001633;DRZ011598;DRZ012983 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chrX:30327504..30327509,-!p1@NR0B1!1.93!84.17!NR0B1;;chr6:10415276..10415341,-!p2@TFAP2A!1.57!44.06!TFAP2A;;chr16:86544113..86544145,+!p1@FOXF1!1.43!31.60!FOXF1;;chr7:35293685..35293718,-!p1@TBX20!1.43!25.83!TBX20;;chr1:158985493..158985535,+!p4@IFI16!1.41!37.37!IFI16;;chr6:10412600..10412637,-!p1@TFAP2A!1.40!39.50!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.31!19.45!IRX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.28!20.36!TFAP2A;;chr15:67418119..67418162,+!p5@SMAD3!1.26!19.14!SMAD3;;chr3:138665937..138665968,-!p1@FOXL2!1.24!16.41!FOXL2;;chr6:126240380..126240430,+!p2@NCOA7!1.23!40.72!NCOA7;;chr15:83953397..83953425,-!p1@BNC1!1.20!17.02!BNC1;;chr15:67418177..67418204,+!p9@SMAD3!1.15!13.07!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!1.13!329.38!FOSL1;;chr3:128206762..128206781,-!p2@GATA2!1.11!73.53!GATA2;;chr6:1389789..1389821,+!p1@FOXF2!1.10!15.80!FOXF2;;chr11:61520075..61520136,+!p1@C11orf9!1.04!21.27!C11orf9;;chr3:138665969..138665993,-!p2@FOXL2!1.02!9.42!FOXL2;;chrY:2803415..2803468,+!p1@ZFY!1.02!9.42!ZFY;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.94!FOSL1;;chr21:30671690..30671762,+!p2@BACH1!0.99!30.69!BACH1;;chr17:46688334..46688385,-!p1@HOXB7!0.99!12.76!HOXB7;;chr5:134369905..134369972,-!p1@PITX1!0.97!13.07!PITX1;;chr15:67418047..67418093,+!p4@SMAD3!0.97!10.64!SMAD3;;chr6:28321909..28321965,-!p3@ZNF323!0.96!8.20!ZNF323;;chr11:31832658..31832681,-!p1@PAX6!0.96!8.20!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!0.96!8.20!FOXG1;;chr11:65687222..65687240,+!p7@DRAP1!0.95!10.33!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!0.95!8.81!HOXB2;;chr9:96717629..96717644,-!p1@BARX1!0.95!7.90!BARX1;;chr6:34204921..34204939,+!p3@HMGA1!0.94!240.66!HMGA1;;chr3:141087393..141087426,+!p3@ZBTB38!0.94!31.60!ZBTB38;;chr7:27142290..27142310,-!p1@HOXA2!0.93!7.60!HOXA2;;chr11:65687362..65687436,+!p3@DRAP1!0.92!34.34!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!0.91!12.76!DRAP1;;chr6:85473156..85473210,-!p2@TBX18!0.91!8.81!TBX18;;chr2:172949484..172949522,+!p1@DLX1!0.90!6.99!DLX1;;chr20:50721803..50721857,-!p2@ZFP64!0.89!10.94!ZFP64;;chr5:172662197..172662216,-!p1@NKX2-5!0.87!6.38!NKX2-5;;chr15:67430351..67430366,+!p10@SMAD3!0.85!6.08!SMAD3;;chr3:128207349..128207386,-!p3@GATA2!0.83!5.77!GATA2;;chr14:29236269..29236285,+!p3@FOXG1!0.81!5.47!FOXG1;;chr1:119530493..119530572,-!p1@TBX15!0.81!5.47!TBX15;;chr7:19157248..19157268,-!p1@TWIST1!0.79!15.19!TWIST1;;chr17:46682321..46682362,-!p1@HOXB6!0.79!5.17!HOXB6;;chr2:172967242..172967265,-!p2@DLX2!0.79!5.17!DLX2;;chr4:188916918..188916942,+!p1@ZFP42!0.79!5.17!ZFP42;;chr14:29234581..29234601,+!p2@FOXG1!0.79!5.17!FOXG1;;chr11:65687243..65687276,+!p8@DRAP1!0.78!6.99!DRAP1;;chr1:158985469..158985489,+!p7@IFI16!0.78!6.08!IFI16;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.86!HOXC5;;chr17:46806067..46806097,-!p1@HOXB13!0.77!4.86!HOXB13;;chr6:10415484..10415508,-!p3@TFAP2A!0.77!4.86!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.86!GATA4;;chrY:21906594..21906622,-!p1@KDM5D!0.77!4.86!KDM5D;;chr3:141087339..141087387,+!p2@ZBTB38!0.76!53.78!ZBTB38;;chr11:65686732..65686756,+!p2@DRAP1!0.74!20.97!DRAP1;;chr7:35293665..35293680,-!p2@TBX20!0.74!4.56!TBX20;;chr1:23885981..23886002,-!p1@ID3!0.73!852.02!ID3;;chr12:3068544..3068597,+!p1@TEAD4!0.73!29.17!TEAD4;;chr17:46621937..46621966,-!p2@HOXB2!0.73!12.76!HOXB2;;chr20:50179368..50179392,-!p2@NFATC2!0.73!5.77!NFATC2;;chr17:46622205..46622218,-!p3@HOXB2!0.73!5.17!HOXB2;;chr2:239148671..239148686,-!p1@HES6!0.72!17.02!HES6;;chr12:104531823..104531849,-!p5@NFYB!0.72!9.42!NFYB;;chr6:126240463..126240489,+!p6@NCOA7!0.72!4.86!NCOA7;;chr6:10412576..10412599,-!p5@TFAP2A!0.72!4.25!TFAP2A;;chr13:100623375..100623425,-!p1@ZIC5!0.72!4.25!ZIC5;;chr6:34205372..34205412,+!p5@HMGA1!0.71!23.70!HMGA1;;chr5:72744594..72744609,-!p1@FOXD1!0.71!20.97!FOXD1;;chr19:53496768..53496799,-!p1@ZNF702P!0.71!6.68!ZNF702P;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.47!TFAP2C;;chr6:126240442..126240459,+!p4@NCOA7!0.71!5.47!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!0.71!5.17!NCOA7;;chr3:114343768..114343822,-!p1@ZBTB20!0.70!19.45!ZBTB20;;chr12:124873357..124873401,-!p1@NCOR2!0.69!52.26!NCOR2;;chr11:46299199..46299233,+!p1@CREB3L1!0.69!22.49!CREB3L1;;chr12:54402745..54402788,+!p1@HOXC8!0.69!3.95!HOXC8;;chr15:96869165..96869183,+!p20@NR2F2!0.69!3.95!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.69!3.95!HOXB3;;chr6:28321971..28321995,-!p1@ZNF323!0.69!3.95!ZNF323;;chr2:172967621..172967637,-!p1@DLX2!0.68!11.24!DLX2;;chr17:46622229..46622257,-!p6@HOXB2!0.68!4.56!HOXB2;;chr6:34204672..34204692,+!p1@HMGA1!0.67!484.66!HMGA1;;chr11:615570..615721,-!p2@IRF7!0.67!7.90!IRF7;;chr11:65688877..65688891,+!p13@DRAP1!0.67!3.65!DRAP1;;chr12:85673977..85674015,+!p1@ALX1!0.67!3.65!ALX1;;chr2:172950227..172950249,+!p2@DLX1!0.67!3.65!DLX1;;chr2:42721205..42721307,+!p4@MTA3!0.67!3.65!MTA3;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.65!HAND2;;chr1:158985457..158985468,+!p12@IFI16!0.67!3.65!IFI16;;chr6:44233252..44233296,-!p1@NFKBIE!0.66!40.72!NFKBIE;;chr10:96122645..96122675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| |expression_enrichment_score=chrX:30327504..30327509,-!p1@NR0B1!1.93!84.17!NR0B1;;chr6:10415276..10415341,-!p2@TFAP2A!1.57!44.06!TFAP2A;;chr16:86544113..86544145,+!p1@FOXF1!1.43!31.60!FOXF1;;chr7:35293685..35293718,-!p1@TBX20!1.43!25.83!TBX20;;chr1:158985493..158985535,+!p4@IFI16!1.41!37.37!IFI16;;chr6:10412600..10412637,-!p1@TFAP2A!1.40!39.50!TFAP2A;;chr5:2751762..2751784,-!p1@IRX2!1.31!19.45!IRX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.28!20.36!TFAP2A;;chr15:67418119..67418162,+!p5@SMAD3!1.26!19.14!SMAD3;;chr3:138665937..138665968,-!p1@FOXL2!1.24!16.41!FOXL2;;chr6:126240380..126240430,+!p2@NCOA7!1.23!40.72!NCOA7;;chr15:83953397..83953425,-!p1@BNC1!1.20!17.02!BNC1;;chr15:67418177..67418204,+!p9@SMAD3!1.15!13.07!SMAD3;;chr11:65667846..65667868,-!p1@FOSL1!1.13!329.38!FOSL1;;chr3:128206762..128206781,-!p2@GATA2!1.11!73.53!GATA2;;chr6:1389789..1389821,+!p1@FOXF2!1.10!15.80!FOXF2;;chr11:61520075..61520136,+!p1@C11orf9!1.04!21.27!C11orf9;;chr3:138665969..138665993,-!p2@FOXL2!1.02!9.42!FOXL2;;chrY:2803415..2803468,+!p1@ZFY!1.02!9.42!ZFY;;chr11:65667884..65667895,-!p2@FOSL1!0.99!34.94!FOSL1;;chr21:30671690..30671762,+!p2@BACH1!0.99!30.69!BACH1;;chr17:46688334..46688385,-!p1@HOXB7!0.99!12.76!HOXB7;;chr5:134369905..134369972,-!p1@PITX1!0.97!13.07!PITX1;;chr15:67418047..67418093,+!p4@SMAD3!0.97!10.64!SMAD3;;chr6:28321909..28321965,-!p3@ZNF323!0.96!8.20!ZNF323;;chr11:31832658..31832681,-!p1@PAX6!0.96!8.20!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!0.96!8.20!FOXG1;;chr11:65687222..65687240,+!p7@DRAP1!0.95!10.33!DRAP1;;chr17:46622440..46622477,-!p5@HOXB2!0.95!8.81!HOXB2;;chr9:96717629..96717644,-!p1@BARX1!0.95!7.90!BARX1;;chr6:34204921..34204939,+!p3@HMGA1!0.94!240.66!HMGA1;;chr3:141087393..141087426,+!p3@ZBTB38!0.94!31.60!ZBTB38;;chr7:27142290..27142310,-!p1@HOXA2!0.93!7.60!HOXA2;;chr11:65687362..65687436,+!p3@DRAP1!0.92!34.34!DRAP1;;chr11:65686802..65686818,+!p6@DRAP1!0.91!12.76!DRAP1;;chr6:85473156..85473210,-!p2@TBX18!0.91!8.81!TBX18;;chr2:172949484..172949522,+!p1@DLX1!0.90!6.99!DLX1;;chr20:50721803..50721857,-!p2@ZFP64!0.89!10.94!ZFP64;;chr5:172662197..172662216,-!p1@NKX2-5!0.87!6.38!NKX2-5;;chr15:67430351..67430366,+!p10@SMAD3!0.85!6.08!SMAD3;;chr3:128207349..128207386,-!p3@GATA2!0.83!5.77!GATA2;;chr14:29236269..29236285,+!p3@FOXG1!0.81!5.47!FOXG1;;chr1:119530493..119530572,-!p1@TBX15!0.81!5.47!TBX15;;chr7:19157248..19157268,-!p1@TWIST1!0.79!15.19!TWIST1;;chr17:46682321..46682362,-!p1@HOXB6!0.79!5.17!HOXB6;;chr2:172967242..172967265,-!p2@DLX2!0.79!5.17!DLX2;;chr4:188916918..188916942,+!p1@ZFP42!0.79!5.17!ZFP42;;chr14:29234581..29234601,+!p2@FOXG1!0.79!5.17!FOXG1;;chr11:65687243..65687276,+!p8@DRAP1!0.78!6.99!DRAP1;;chr1:158985469..158985489,+!p7@IFI16!0.78!6.08!IFI16;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.77!4.86!HOXC5;;chr17:46806067..46806097,-!p1@HOXB13!0.77!4.86!HOXB13;;chr6:10415484..10415508,-!p3@TFAP2A!0.77!4.86!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!0.77!4.86!GATA4;;chrY:21906594..21906622,-!p1@KDM5D!0.77!4.86!KDM5D;;chr3:141087339..141087387,+!p2@ZBTB38!0.76!53.78!ZBTB38;;chr11:65686732..65686756,+!p2@DRAP1!0.74!20.97!DRAP1;;chr7:35293665..35293680,-!p2@TBX20!0.74!4.56!TBX20;;chr1:23885981..23886002,-!p1@ID3!0.73!852.02!ID3;;chr12:3068544..3068597,+!p1@TEAD4!0.73!29.17!TEAD4;;chr17:46621937..46621966,-!p2@HOXB2!0.73!12.76!HOXB2;;chr20:50179368..50179392,-!p2@NFATC2!0.73!5.77!NFATC2;;chr17:46622205..46622218,-!p3@HOXB2!0.73!5.17!HOXB2;;chr2:239148671..239148686,-!p1@HES6!0.72!17.02!HES6;;chr12:104531823..104531849,-!p5@NFYB!0.72!9.42!NFYB;;chr6:126240463..126240489,+!p6@NCOA7!0.72!4.86!NCOA7;;chr6:10412576..10412599,-!p5@TFAP2A!0.72!4.25!TFAP2A;;chr13:100623375..100623425,-!p1@ZIC5!0.72!4.25!ZIC5;;chr6:34205372..34205412,+!p5@HMGA1!0.71!23.70!HMGA1;;chr5:72744594..72744609,-!p1@FOXD1!0.71!20.97!FOXD1;;chr19:53496768..53496799,-!p1@ZNF702P!0.71!6.68!ZNF702P;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.47!TFAP2C;;chr6:126240442..126240459,+!p4@NCOA7!0.71!5.47!NCOA7;;chr6:126240356..126240379,+!p7@NCOA7!0.71!5.17!NCOA7;;chr3:114343768..114343822,-!p1@ZBTB20!0.70!19.45!ZBTB20;;chr12:124873357..124873401,-!p1@NCOR2!0.69!52.26!NCOR2;;chr11:46299199..46299233,+!p1@CREB3L1!0.69!22.49!CREB3L1;;chr12:54402745..54402788,+!p1@HOXC8!0.69!3.95!HOXC8;;chr15:96869165..96869183,+!p20@NR2F2!0.69!3.95!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.69!3.95!HOXB3;;chr6:28321971..28321995,-!p1@ZNF323!0.69!3.95!ZNF323;;chr2:172967621..172967637,-!p1@DLX2!0.68!11.24!DLX2;;chr17:46622229..46622257,-!p6@HOXB2!0.68!4.56!HOXB2;;chr6:34204672..34204692,+!p1@HMGA1!0.67!484.66!HMGA1;;chr11:615570..615721,-!p2@IRF7!0.67!7.90!IRF7;;chr11:65688877..65688891,+!p13@DRAP1!0.67!3.65!DRAP1;;chr12:85673977..85674015,+!p1@ALX1!0.67!3.65!ALX1;;chr2:172950227..172950249,+!p2@DLX1!0.67!3.65!DLX1;;chr2:42721205..42721307,+!p4@MTA3!0.67!3.65!MTA3;;chr4:174451370..174451387,-!p1@HAND2!0.67!3.65!HAND2;;chr1:158985457..158985468,+!p12@IFI16!0.67!3.65!IFI16;;chr6:44233252..44233296,-!p1@NFKBIE!0.66!40.72!NFKBIE;;chr10:96122645..96122675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| ||
|ffid_belonging_in_development=CL:0000222 | |||
|fonse_cell_line=FF:0102424 | |fonse_cell_line=FF:0102424 | ||
|fonse_cell_line_closure=FF:0102424 | |fonse_cell_line_closure=FF:0102424 | ||
Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aONE58.CNhs13075.10858-111G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10858-111G3 | |id=FF:10858-111G3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |||
|library_id=CNhs13075 | |||
|library_id_phase_based=2:CNhs13075 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10858 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10858 | |||
|name=mesothelioma cell line:ONE58 | |name=mesothelioma cell line:ONE58 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13075,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13075,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.057615473793988,0,0.057615473793988,0,0,0.24096181880854,0,-0.0711517414588882,0.656208652706298,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128069437828306,0,0,0,0,0,0.303321952626868,0,0,0.587536734337018,0,0,0,0,0,0,0,0,0,0,0.450735451637159,0,-0.0421933041974449,0.126191922465987,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.0182385863453709,0,0,0.108866763521529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.057615473793988,0,0,0,0,0,0,0,0,0,-0.0672039870801204,-0.070501178607502,0,0,0.057615473793988,0.206210390734626,-0.0980353512377064,0.535104054793303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.115230947587976,0,0,-0.00365558378215836,0.0153799911967698,0,0,0.115230947587976,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.206210390734626,0.115230947587976,0.115230947587976,0,0,0,0,0,0,0,-0.131947927697588,0,-0.0728063698570827,0.0626952482111539,0,0,-0.0118776754293355,0,0.115230947587976,0,0,0,0,0,0,0,0.444140460271179,0,0.0648183959986611,0,0.115230947587976,0,0,-0.0186252810838506,-0.190241283310431,0,0.198197277422475,0.332935587817557,0,0,0,0,0.257795233560174,0,-0.120879483793741,0.123490222411208,0.123848370213587,-0.15763735435489,-0.04680465889238,0,0,0,-0.65751377106366,0.080149850525059,0,0,-0.121779851751874,-0.0406533944722923,0,0,-0.391044581551635,0,0.00110832303995556,-0.162251401608953,0,0.239226827048947,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,0.367632344513076,0.130471234645987,0.206210390734626,0.281392448176734,0,-0.307939193402192,0,0,0.232944637858774,0.0117604716918728,-0.0370355744171628,0.23325669361701,0,-0.187158779421937,0.0200114894284861,-0.429076311951927,-0.0672039870801204,0.133990598805595,-0.189981719549847,0,-0.411761362001661,-0.214012301890268,0,0.0365935627959502,-0.0484405040595103,-0.381547093232734,0.0984372351100915,0.115230947587976,0,0.106721251573661,-0.31440833560027,0,0.096020611154547,-0.0393792628396146,-0.0356895043812856,-0.149751294711912,-0.0177668735737585,-0.126297509780044,0.0328461111758303,0.368866437564195,0.077969030968403,0,0.0604211425128195,0,0,0,0.0601043044680635,0.291054332655731,-0.120695556841643,0,-0.277767071076355,0.46706122278763,0,-0.0444517176388275,-0.0959982505193429,0,0,-0.0433717470064142,0,0,0.140672713012166,0,0,0.111669910127314,-0.0887566913930073,0.112604396760849,0,0.0503937873571435,0,0.249375779008337,0,-0.206208894917414,0.292959854726231,-0.122529891374186,0.0687266623835687,0,-0.0550742673803365,-0.00204092775606812,-0.00552465347298337,-0.141002357215004,0.222945621364908,0.172008472881951,-0.070644873269614,-0.171094779354559,-0.338204413153067,0.0138663330553373,1.42510989001626,0,0.0658627671424374,0.151304691338946,0,0.179181977846686,0,0.208391346560628,0,-0.10314835783449,0,0.137887360605485,-0.259041303296506,-0.439289374580686,0.233639692186429,0,-0.149968736900011,-0.150395159293262,0,0.117145051840974,0,0,-0.150367083334639,-0.125435639288839,-0.211650427864589,0.231818480620617,0,-0.29494954205262,0,0,0.184886214170481,-0.0292656470297629,0,0.138783060221708,0.085418026978649,-0.0319557139715509,-0.115971073434934,0,0,-0.530469390404749,0.027757201809206,0,-0.110797447480994,-0.0255513606620186,-0.619783323958633,-0.253326341486756,0.0316035200860052,-0.108622809454255,0,0,0.103864682211558,0,0.468801425741085,0,0,-0.146776101231511,0.0610427838748329,0,0,0,-0.0545694664693975,0,-0.0589565109853561,0,0,0,0,0,0.0496336176841217,0.217426997007296,0,0,0,0,0,0,0,0,0,0,0.586953222512586,-0.00119736768011402,-0.12301741567642,0,0,0,0,0.279407213783562,0.14222339622167,0,-0.0166317589096557,0,0,0,0,-0.0861409897892114,0,0,0.057615473793988,0.057615473793988,0.057500490534312,-0.128095441323598,0,0,0,0.788815661409872,0,0,0,0,-0.124598097010619,0,0,0.480715042999966,0,-0.244902977799243,-0.0815818795468414,0,-0.503240052047245,-0.0955439084084304,0.662013962243096,0,0,-0.0551367410552618,0,0.0232317584900334,0.121507552630563,0,0.281392448176734,0,0,0,0,0,0,0,-0.0990835648117796,0,0,0.0492029128611911,0,0,0.115230947587976,0,0,0,0,0,0.0315093562432212,0.309055792236415,0,0,0,0,0,0,0,0.136614646082398,-0.132117971081513,0,0,0,0,0,0,0,0,0.134804854152099,0,0,0,0,0,0.0182385863453709,0,0,0,0.115230947587976,1.10620691467797,0,0,-0.0711517414588882,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082891304699178,0.015396445754579,0,0,0,0,0,0,0,-0.159602350618114,0,0.206210390734626,0,0,-0.113884373708977,0.115230947587976,0,0,0.296483464105769,0,0.24096181880854,0,0,0,0.057615473793988,0,0.110250983361039,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219168650079806,-0.0247755787802223,-0.080997125238284,-0.0107033267886266,0,0,-0.129523157265729,0,0,0,0,0,0,0.0262750497654609,0.0522963991759944,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115230947587976,0,0,0,0,0,0,-0.00375245369092681,0,0,0,0,0,0,0,0.303321952626868,0,0,-0.0920328098005262,0,0,0,0,0,0,-0.0297214424152585,0.19234013411615,-0.0465861833171639,0,0,0,0.00322990131153301,0,0,0,0,0.139433003315724,0,0,0,0,0,0,0,0,0.206210390734626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128069437828306,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206210390734626,0,0,0,0,0,0,0,0.0236041105185715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126191922465987,0,0,0,0.507407094458837,0,0,0,0,0,0,0,0,0.345459958316394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115230947587976,0,0,0,0.206210390734626,0,0,0,-0.124036418773661,0,0,0,0,0,0,0,0,0.450735451637159,0,0,0,0,0.233170372937679,0,0.121833758504599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0872317359649993,0,0,0,0,0.40309834097624,0,0,0,0,0,0,0.450735451637159,0,0,0,0.281392448176734,0,0,0,0,0,0,0,0,0,0,0.680711003877045,0,0,-0.0421933041974449,0,0,0,0,0,0,0,0,0,0,0,0,0.0539107684378496,0,0,0,0,0,0,0,0,0,0,-0.048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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 78: | ||
|rna_weight_ug=151.4268 | |rna_weight_ug=151.4268 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=10092313 | |sample_cell_catalog=10092313 | ||
|sample_cell_line=ONE58 | |sample_cell_line=ONE58 | ||
Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.51806458497069e-257!GO:0043231;intracellular membrane-bound organelle;4.9632766009839e-212!GO:0043227;membrane-bound organelle;5.39087200540897e-212!GO:0043226;organelle;5.90845815572124e-208!GO:0043229;intracellular organelle;2.50201514672498e-207!GO:0005737;cytoplasm;1.90694580366244e-188!GO:0044422;organelle part;1.43064958783794e-149!GO:0044446;intracellular organelle part;5.62888149092616e-148!GO:0044444;cytoplasmic part;6.89525341893651e-139!GO:0032991;macromolecular complex;4.48613597623313e-104!GO:0044237;cellular metabolic process;6.82732355179076e-99!GO:0044238;primary metabolic process;1.47094183652163e-98!GO:0030529;ribonucleoprotein complex;2.27396023178167e-91!GO:0043170;macromolecule metabolic process;2.68928029916414e-89!GO:0005634;nucleus;4.66691265706843e-88!GO:0003723;RNA binding;5.65662145853871e-81!GO:0043233;organelle lumen;2.27426240086348e-79!GO:0031974;membrane-enclosed lumen;2.27426240086348e-79!GO:0044428;nuclear part;1.07618505149494e-78!GO:0005739;mitochondrion;1.37108318538113e-74!GO:0005515;protein binding;3.57897199629222e-70!GO:0006412;translation;3.01549715982399e-56!GO:0005840;ribosome;1.51122549790379e-54!GO:0006396;RNA processing;1.29693635175095e-53!GO:0031090;organelle membrane;3.32512248052192e-52!GO:0019538;protein metabolic process;2.73242463629054e-51!GO:0043234;protein complex;3.2180757911954e-51!GO:0016043;cellular component organization and biogenesis;3.16399438046183e-50!GO:0043283;biopolymer metabolic process;2.52699613761578e-49!GO:0044429;mitochondrial part;5.26434674649441e-48!GO:0031981;nuclear lumen;1.85068289312235e-47!GO:0003735;structural constituent of ribosome;5.85528327464914e-47!GO:0009058;biosynthetic process;6.10007579323824e-47!GO:0010467;gene expression;8.39420866612039e-47!GO:0033036;macromolecule localization;1.38281224478464e-46!GO:0015031;protein transport;1.54634509420177e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.85263037718741e-45!GO:0044260;cellular macromolecule metabolic process;2.22422355167631e-45!GO:0044249;cellular biosynthetic process;2.57602893257617e-45!GO:0044267;cellular protein metabolic process;3.82380758056346e-45!GO:0005829;cytosol;3.91866192722382e-43!GO:0009059;macromolecule biosynthetic process;4.74623373452455e-43!GO:0031967;organelle envelope;6.79751468276333e-43!GO:0031975;envelope;1.1198252010435e-42!GO:0008104;protein localization;1.98375719073512e-42!GO:0045184;establishment of protein localization;2.97731261471955e-42!GO:0033279;ribosomal subunit;1.06723202857611e-39!GO:0016071;mRNA metabolic process;3.92797921009733e-39!GO:0046907;intracellular transport;4.45959389457702e-38!GO:0008380;RNA splicing;7.41861138451687e-38!GO:0006996;organelle organization and biogenesis;8.51957762854618e-35!GO:0006397;mRNA processing;1.45343995880453e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.52319932305e-33!GO:0065003;macromolecular complex assembly;6.69138659855704e-33!GO:0043228;non-membrane-bound organelle;9.76133516389927e-33!GO:0043232;intracellular non-membrane-bound organelle;9.76133516389927e-33!GO:0006886;intracellular protein transport;8.63756397564556e-31!GO:0022607;cellular component assembly;1.48827596605923e-30!GO:0005740;mitochondrial envelope;5.05783378019747e-30!GO:0006259;DNA metabolic process;2.41977576195292e-29!GO:0005654;nucleoplasm;8.04920677521097e-29!GO:0031966;mitochondrial membrane;1.6184011389491e-28!GO:0003676;nucleic acid binding;9.0971567906376e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.0670777715952e-27!GO:0019866;organelle inner membrane;2.45021874893792e-27!GO:0005681;spliceosome;1.09771201197253e-26!GO:0000166;nucleotide binding;1.10937194064471e-26!GO:0016462;pyrophosphatase activity;5.91927963023788e-26!GO:0007049;cell cycle;7.44515407846476e-26!GO:0017111;nucleoside-triphosphatase activity;7.97000157230201e-26!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.99678474844732e-26!GO:0016817;hydrolase activity, acting on acid anhydrides;1.26219748566418e-25!GO:0051649;establishment of cellular localization;2.31510394208728e-25!GO:0005743;mitochondrial inner membrane;2.81588531132405e-25!GO:0051641;cellular localization;4.65294566372382e-25!GO:0044451;nucleoplasm part;1.24119042482177e-23!GO:0044445;cytosolic part;1.25287183469246e-23!GO:0031980;mitochondrial lumen;9.20231634124233e-22!GO:0005759;mitochondrial matrix;9.20231634124233e-22!GO:0012505;endomembrane system;1.28850258518025e-21!GO:0006119;oxidative phosphorylation;1.69087640269971e-21!GO:0015934;large ribosomal subunit;3.2170435737644e-21!GO:0016874;ligase activity;1.7446727993776e-20!GO:0005730;nucleolus;1.88702828174059e-20!GO:0016070;RNA metabolic process;3.0611045955818e-20!GO:0006457;protein folding;6.2152054353745e-20!GO:0044265;cellular macromolecule catabolic process;1.28665122177165e-19!GO:0015935;small ribosomal subunit;1.8245188249812e-19!GO:0032553;ribonucleotide binding;1.96049898364806e-19!GO:0032555;purine ribonucleotide binding;1.96049898364806e-19!GO:0022402;cell cycle process;3.32271380916378e-19!GO:0006512;ubiquitin cycle;3.81368558040926e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;6.47587887213198e-19!GO:0017076;purine nucleotide binding;9.40136204567418e-19!GO:0019941;modification-dependent protein catabolic process;1.03468488949035e-18!GO:0043632;modification-dependent macromolecule catabolic process;1.03468488949035e-18!GO:0051186;cofactor metabolic process;1.23032316258928e-18!GO:0044257;cellular protein catabolic process;1.98224804783333e-18!GO:0044455;mitochondrial membrane part;2.11666739330558e-18!GO:0048770;pigment granule;2.60987175376152e-18!GO:0042470;melanosome;2.60987175376152e-18!GO:0006511;ubiquitin-dependent protein catabolic process;2.60987175376152e-18!GO:0000502;proteasome complex (sensu Eukaryota);2.68702386611304e-18!GO:0000278;mitotic cell cycle;4.42872031054322e-18!GO:0006974;response to DNA damage stimulus;9.72097480961848e-18!GO:0022618;protein-RNA complex assembly;1.0305251447269e-17!GO:0044248;cellular catabolic process;1.17439463006422e-17!GO:0005783;endoplasmic reticulum;2.2671792366899e-17!GO:0043285;biopolymer catabolic process;3.02347333466559e-17!GO:0008134;transcription factor binding;4.67750567126468e-17!GO:0009057;macromolecule catabolic process;1.66071975675112e-16!GO:0042254;ribosome biogenesis and assembly;1.79966456560278e-16!GO:0005761;mitochondrial ribosome;3.834725474528e-16!GO:0000313;organellar ribosome;3.834725474528e-16!GO:0008135;translation factor activity, nucleic acid binding;5.24711260318759e-16!GO:0005524;ATP binding;6.29876707365409e-16!GO:0032559;adenyl ribonucleotide binding;7.87201451207045e-16!GO:0005746;mitochondrial respiratory chain;4.42119930204912e-15!GO:0030554;adenyl nucleotide binding;5.4721532593218e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.13640767706874e-15!GO:0030163;protein catabolic process;7.42213970813372e-15!GO:0006605;protein targeting;9.13375324260349e-15!GO:0005694;chromosome;1.30608839767556e-14!GO:0044432;endoplasmic reticulum part;1.33835963637234e-14!GO:0006281;DNA repair;1.56075597095038e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.20124059100515e-14!GO:0051082;unfolded protein binding;2.57166440904186e-14!GO:0016887;ATPase activity;2.96142977156903e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.97194103843337e-14!GO:0003954;NADH dehydrogenase activity;2.97194103843337e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.97194103843337e-14!GO:0006732;coenzyme metabolic process;3.03472183884523e-14!GO:0048193;Golgi vesicle transport;4.13258433026543e-14!GO:0005794;Golgi apparatus;5.87235727357926e-14!GO:0022403;cell cycle phase;7.8596649889851e-14!GO:0042623;ATPase activity, coupled;9.88371498280096e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17345605404353e-13!GO:0044427;chromosomal part;2.13863288183562e-13!GO:0005635;nuclear envelope;2.17492278371005e-13!GO:0004386;helicase activity;2.61654971789693e-13!GO:0000087;M phase of mitotic cell cycle;3.08643729980747e-13!GO:0009719;response to endogenous stimulus;4.10397271514939e-13!GO:0051301;cell division;4.55780576139207e-13!GO:0007067;mitosis;5.05885612285255e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;5.2863344479947e-13!GO:0000375;RNA splicing, via transesterification reactions;5.2863344479947e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.2863344479947e-13!GO:0044453;nuclear membrane part;7.0086048686419e-13!GO:0016192;vesicle-mediated transport;1.03368449780763e-12!GO:0012501;programmed cell death;1.05464462562835e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.10676536831647e-12!GO:0009055;electron carrier activity;1.36910441480366e-12!GO:0006915;apoptosis;2.10112726020202e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.12960954739666e-12!GO:0042773;ATP synthesis coupled electron transport;2.12960954739666e-12!GO:0003743;translation initiation factor activity;2.21851645644268e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.62215578067937e-12!GO:0045271;respiratory chain complex I;2.62215578067937e-12!GO:0005747;mitochondrial respiratory chain complex I;2.62215578067937e-12!GO:0031965;nuclear membrane;2.99957569247764e-12!GO:0043412;biopolymer modification;5.60123651635141e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.2812295349054e-12!GO:0006260;DNA replication;7.02247094982178e-12!GO:0006399;tRNA metabolic process;9.50412121472331e-12!GO:0051276;chromosome organization and biogenesis;1.07466101963144e-11!GO:0008026;ATP-dependent helicase activity;1.21228805904149e-11!GO:0003712;transcription cofactor activity;1.37386649462959e-11!GO:0006413;translational initiation;1.70533775297698e-11!GO:0009259;ribonucleotide metabolic process;2.32650641617743e-11!GO:0008219;cell death;2.99835174019732e-11!GO:0016265;death;2.99835174019732e-11!GO:0008639;small protein conjugating enzyme activity;3.37111538303918e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.71900054789401e-11!GO:0006366;transcription from RNA polymerase II promoter;4.11032680472514e-11!GO:0016604;nuclear body;4.38997375392634e-11!GO:0000279;M phase;5.33272063659246e-11!GO:0006913;nucleocytoplasmic transport;7.4037243461225e-11!GO:0006364;rRNA processing;8.74523118633267e-11!GO:0004842;ubiquitin-protein ligase activity;1.02479238545269e-10!GO:0005789;endoplasmic reticulum membrane;1.48742326716966e-10!GO:0016072;rRNA metabolic process;1.62839582712548e-10!GO:0051169;nuclear transport;1.81761350719578e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.94798396841875e-10!GO:0006464;protein modification process;2.19564281866729e-10!GO:0006163;purine nucleotide metabolic process;2.36062101049071e-10!GO:0019787;small conjugating protein ligase activity;2.51990691708778e-10!GO:0005643;nuclear pore;2.77880592324756e-10!GO:0009150;purine ribonucleotide metabolic process;4.3981928832914e-10!GO:0009056;catabolic process;4.55770570822057e-10!GO:0065002;intracellular protein transport across a membrane;4.68416801406144e-10!GO:0006446;regulation of translational initiation;5.64584653122295e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.80826031284813e-10!GO:0009260;ribonucleotide biosynthetic process;5.89397215662611e-10!GO:0051726;regulation of cell cycle;6.93154809763187e-10!GO:0006461;protein complex assembly;7.30694949226205e-10!GO:0000074;regulation of progression through cell cycle;9.41102127893538e-10!GO:0051188;cofactor biosynthetic process;1.31003595186132e-09!GO:0008565;protein transporter activity;1.50893662929262e-09!GO:0006164;purine nucleotide biosynthetic process;1.86582458942284e-09!GO:0016881;acid-amino acid ligase activity;2.26664595046701e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.27303349054989e-09!GO:0050794;regulation of cellular process;2.40068492609085e-09!GO:0006403;RNA localization;2.62556383716125e-09!GO:0050657;nucleic acid transport;2.62556383716125e-09!GO:0051236;establishment of RNA localization;2.62556383716125e-09!GO:0050658;RNA transport;2.62556383716125e-09!GO:0043687;post-translational protein modification;2.8945714112221e-09!GO:0005793;ER-Golgi intermediate compartment;2.90394923868603e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.33872578146117e-09!GO:0043067;regulation of programmed cell death;3.62411207948246e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;3.91249872414557e-09!GO:0003924;GTPase activity;4.0785935909893e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.18327117178961e-09!GO:0065004;protein-DNA complex assembly;4.20385762596762e-09!GO:0042981;regulation of apoptosis;4.43851473035007e-09!GO:0009141;nucleoside triphosphate metabolic process;4.94207631121326e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.00374359732823e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.00374359732823e-09!GO:0051246;regulation of protein metabolic process;5.37611597054916e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.41424761704977e-09!GO:0046930;pore complex;6.82242663447538e-09!GO:0007005;mitochondrion organization and biogenesis;9.21967715249874e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.12452953668376e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.12452953668376e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.12452953668376e-08!GO:0006323;DNA packaging;1.16008218347724e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.44121310651435e-08!GO:0015986;ATP synthesis coupled proton transport;1.70264578692298e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.70264578692298e-08!GO:0046034;ATP metabolic process;1.81837399819812e-08!GO:0016779;nucleotidyltransferase activity;2.20274104963319e-08!GO:0017038;protein import;2.38144132370486e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.85814625125962e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.85814625125962e-08!GO:0048523;negative regulation of cellular process;2.85886728265122e-08!GO:0009060;aerobic respiration;3.04336845521661e-08!GO:0005768;endosome;3.04589117539464e-08!GO:0043038;amino acid activation;4.29657565330908e-08!GO:0006418;tRNA aminoacylation for protein translation;4.29657565330908e-08!GO:0043039;tRNA aminoacylation;4.29657565330908e-08!GO:0048475;coated membrane;4.43765516377727e-08!GO:0030117;membrane coat;4.43765516377727e-08!GO:0016607;nuclear speck;4.44558818325009e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.04415827895991e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.4597329361474e-08!GO:0005839;proteasome core complex (sensu Eukaryota);5.88463364743718e-08!GO:0009108;coenzyme biosynthetic process;5.93445782454627e-08!GO:0016491;oxidoreductase activity;6.38656693527447e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.38656693527447e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.38656693527447e-08!GO:0005667;transcription factor complex;6.48168855550147e-08!GO:0030120;vesicle coat;7.55851414364731e-08!GO:0030662;coated vesicle membrane;7.55851414364731e-08!GO:0015078;hydrogen ion transmembrane transporter activity;8.13989081583939e-08!GO:0009117;nucleotide metabolic process;1.04059355136075e-07!GO:0045333;cellular respiration;1.11475220702526e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.45440593430364e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.66768768427857e-07!GO:0051028;mRNA transport;1.68974306998271e-07!GO:0019829;cation-transporting ATPase activity;1.75550146944585e-07!GO:0000785;chromatin;1.78712447138764e-07!GO:0006754;ATP biosynthetic process;2.07668596949852e-07!GO:0006753;nucleoside phosphate metabolic process;2.07668596949852e-07!GO:0006333;chromatin assembly or disassembly;2.12173154702704e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.291328975307e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.60213983163242e-07!GO:0015630;microtubule cytoskeleton;2.94707652350477e-07!GO:0032446;protein modification by small protein conjugation;3.11353193892676e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.193876275724e-07!GO:0016787;hydrolase activity;3.44953761403492e-07!GO:0003724;RNA helicase activity;3.77305913650427e-07!GO:0016567;protein ubiquitination;3.99131035625295e-07!GO:0048519;negative regulation of biological process;4.86072791035974e-07!GO:0004298;threonine endopeptidase activity;5.62307422518996e-07!GO:0016740;transferase activity;6.70193726324792e-07!GO:0043069;negative regulation of programmed cell death;6.89236636411654e-07!GO:0043566;structure-specific DNA binding;8.12448932508859e-07!GO:0003697;single-stranded DNA binding;8.95301642394913e-07!GO:0003714;transcription corepressor activity;1.22612272042506e-06!GO:0016564;transcription repressor activity;1.39033183385376e-06!GO:0006099;tricarboxylic acid cycle;1.39033183385376e-06!GO:0046356;acetyl-CoA catabolic process;1.39033183385376e-06!GO:0043066;negative regulation of apoptosis;1.50950687195382e-06!GO:0031988;membrane-bound vesicle;1.57883502344207e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.59452013773482e-06!GO:0006084;acetyl-CoA metabolic process;2.2481167671777e-06!GO:0005762;mitochondrial large ribosomal subunit;2.41339815824047e-06!GO:0000315;organellar large ribosomal subunit;2.41339815824047e-06!GO:0008654;phospholipid biosynthetic process;2.64327808720184e-06!GO:0044431;Golgi apparatus part;2.96300439077523e-06!GO:0005819;spindle;3.03034404757706e-06!GO:0005525;GTP binding;3.30953609783308e-06!GO:0005773;vacuole;4.05935780618219e-06!GO:0000151;ubiquitin ligase complex;4.93145193570622e-06!GO:0051187;cofactor catabolic process;5.18508020429031e-06!GO:0000245;spliceosome assembly;5.41393502411754e-06!GO:0006916;anti-apoptosis;5.85368070596161e-06!GO:0005788;endoplasmic reticulum lumen;6.1858998191658e-06!GO:0006752;group transfer coenzyme metabolic process;6.86306067003053e-06!GO:0045259;proton-transporting ATP synthase complex;6.95238527850582e-06!GO:0051427;hormone receptor binding;8.20793334781721e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.7035693932894e-06!GO:0006091;generation of precursor metabolites and energy;9.45318705734987e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.04177382511622e-05!GO:0050789;regulation of biological process;1.04959575984018e-05!GO:0045454;cell redox homeostasis;1.06922077062857e-05!GO:0031982;vesicle;1.10516147629112e-05!GO:0016568;chromatin modification;1.11584963116089e-05!GO:0019222;regulation of metabolic process;1.15012213087095e-05!GO:0005798;Golgi-associated vesicle;1.15722912983015e-05!GO:0006414;translational elongation;1.22343553155781e-05!GO:0043623;cellular protein complex assembly;1.2288672017432e-05!GO:0051329;interphase of mitotic cell cycle;1.28751806705655e-05!GO:0009109;coenzyme catabolic process;1.28751806705655e-05!GO:0006613;cotranslational protein targeting to membrane;1.39589100880351e-05!GO:0031410;cytoplasmic vesicle;1.4322487795849e-05!GO:0008186;RNA-dependent ATPase activity;1.46721852982737e-05!GO:0006334;nucleosome assembly;1.50620957689339e-05!GO:0007051;spindle organization and biogenesis;1.56668816438713e-05!GO:0051325;interphase;1.70659119291069e-05!GO:0051170;nuclear import;1.8561937252291e-05!GO:0035257;nuclear hormone receptor binding;1.85873775838029e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.88412731323459e-05!GO:0031968;organelle outer membrane;1.97682677182486e-05!GO:0031497;chromatin assembly;2.24325831991936e-05!GO:0016853;isomerase activity;2.28699435894113e-05!GO:0044440;endosomal part;2.52503589625479e-05!GO:0010008;endosome membrane;2.52503589625479e-05!GO:0006261;DNA-dependent DNA replication;2.52968859546501e-05!GO:0005813;centrosome;2.66244024649739e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.80661429320088e-05!GO:0051168;nuclear export;2.96982150724142e-05!GO:0030867;rough endoplasmic reticulum membrane;3.22798133034621e-05!GO:0003713;transcription coactivator activity;3.27186665467375e-05!GO:0005770;late endosome;3.31926630881173e-05!GO:0019867;outer membrane;3.4045599209675e-05!GO:0031324;negative regulation of cellular metabolic process;3.89088189182018e-05!GO:0004004;ATP-dependent RNA helicase activity;4.38980541976337e-05!GO:0006606;protein import into nucleus;4.86182502959158e-05!GO:0000139;Golgi membrane;4.86224039775383e-05!GO:0000323;lytic vacuole;5.14683045782749e-05!GO:0005764;lysosome;5.14683045782749e-05!GO:0032561;guanyl ribonucleotide binding;5.17446744200192e-05!GO:0019001;guanyl nucleotide binding;5.17446744200192e-05!GO:0016563;transcription activator activity;5.45489779516326e-05!GO:0003899;DNA-directed RNA polymerase activity;5.6258129062802e-05!GO:0048522;positive regulation of cellular process;5.73791974330979e-05!GO:0019843;rRNA binding;5.75703037697162e-05!GO:0006612;protein targeting to membrane;6.75175205264857e-05!GO:0000775;chromosome, pericentric region;7.31701219212422e-05!GO:0005815;microtubule organizing center;7.71816754074008e-05!GO:0008033;tRNA processing;7.73180589616916e-05!GO:0000314;organellar small ribosomal subunit;8.53277187978482e-05!GO:0005763;mitochondrial small ribosomal subunit;8.53277187978482e-05!GO:0005657;replication fork;0.000105452149153759!GO:0044452;nucleolar part;0.000106124277128911!GO:0005048;signal sequence binding;0.000107957391790753!GO:0006839;mitochondrial transport;0.000111489071689439!GO:0005769;early endosome;0.000111528471762263!GO:0005741;mitochondrial outer membrane;0.00011868086014783!GO:0043021;ribonucleoprotein binding;0.000120110229189886!GO:0005905;coated pit;0.000124876114317952!GO:0015980;energy derivation by oxidation of organic compounds;0.000125518983362929!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000144053646453158!GO:0045786;negative regulation of progression through cell cycle;0.000157846452701153!GO:0043681;protein import into mitochondrion;0.000179911596808828!GO:0006626;protein targeting to mitochondrion;0.000182462980609597!GO:0051789;response to protein stimulus;0.000183793615926664!GO:0006986;response to unfolded protein;0.000183793615926664!GO:0030880;RNA polymerase complex;0.000194066558924259!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000200549057480268!GO:0015399;primary active transmembrane transporter activity;0.000200549057480268!GO:0043284;biopolymer biosynthetic process;0.000206234665808042!GO:0019899;enzyme binding;0.000209083221654411!GO:0007243;protein kinase cascade;0.000223521317599355!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000234780997708137!GO:0009892;negative regulation of metabolic process;0.000258637940768863!GO:0009165;nucleotide biosynthetic process;0.000300072762397223!GO:0008632;apoptotic program;0.000300617356913347!GO:0016859;cis-trans isomerase activity;0.000305981824860947!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000317074747793968!GO:0030663;COPI coated vesicle membrane;0.000321760938553589!GO:0030126;COPI vesicle coat;0.000321760938553589!GO:0006352;transcription initiation;0.000354038512686825!GO:0007010;cytoskeleton organization and biogenesis;0.000385320955468476!GO:0000075;cell cycle checkpoint;0.000423729100045493!GO:0006793;phosphorus metabolic process;0.000437975792929309!GO:0006796;phosphate metabolic process;0.000437975792929309!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000449063938976102!GO:0000428;DNA-directed RNA polymerase complex;0.000449063938976102!GO:0008094;DNA-dependent ATPase activity;0.000481752276819714!GO:0003729;mRNA binding;0.00050762611188084!GO:0030036;actin cytoskeleton organization and biogenesis;0.00050762611188084!GO:0008250;oligosaccharyl transferase complex;0.000507955208352065!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000510433494129228!GO:0033116;ER-Golgi intermediate compartment membrane;0.000555058215442654!GO:0030659;cytoplasmic vesicle membrane;0.000582458880821694!GO:0046467;membrane lipid biosynthetic process;0.000645144702419019!GO:0005885;Arp2/3 protein complex;0.000659396131796919!GO:0006891;intra-Golgi vesicle-mediated transport;0.000678775551527089!GO:0031252;leading edge;0.00071734962970861!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000723823814742834!GO:0051920;peroxiredoxin activity;0.000735465394613413!GO:0048471;perinuclear region of cytoplasm;0.000774143582792508!GO:0030137;COPI-coated vesicle;0.000849791797605537!GO:0046474;glycerophospholipid biosynthetic process;0.00086905755475002!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000895954342496376!GO:0016310;phosphorylation;0.000902466036087102!GO:0046483;heterocycle metabolic process;0.000970802178429256!GO:0016197;endosome transport;0.00100635632192793!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00103683367932989!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0010971891023919!GO:0044433;cytoplasmic vesicle part;0.00112855881467601!GO:0051540;metal cluster binding;0.00115507250147739!GO:0051536;iron-sulfur cluster binding;0.00115507250147739!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00120141384802248!GO:0016481;negative regulation of transcription;0.00121376502794784!GO:0007006;mitochondrial membrane organization and biogenesis;0.00131007571939034!GO:0031323;regulation of cellular metabolic process;0.00131362061991075!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00131362061991075!GO:0000049;tRNA binding;0.00131362061991075!GO:0006302;double-strand break repair;0.00131915269261957!GO:0008610;lipid biosynthetic process;0.00133989878272755!GO:0048487;beta-tubulin binding;0.00135801323015645!GO:0044262;cellular carbohydrate metabolic process;0.0013603346501438!GO:0016363;nuclear matrix;0.00138988682545961!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00139887318467941!GO:0042802;identical protein binding;0.00140320359710995!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00146592055191337!GO:0051087;chaperone binding;0.00158035527195237!GO:0004576;oligosaccharyl transferase activity;0.00161871651521728!GO:0006401;RNA catabolic process;0.00163738453845403!GO:0030133;transport vesicle;0.00164733389121374!GO:0006402;mRNA catabolic process;0.0017100424024245!GO:0003678;DNA helicase activity;0.00172520356630179!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00172520356630179!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00172520356630179!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00172520356630179!GO:0030118;clathrin coat;0.00173014724893373!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00176057384214024!GO:0016126;sterol biosynthetic process;0.00179825923619294!GO:0007059;chromosome segregation;0.00187175309893161!GO:0031072;heat shock protein binding;0.00193977409069681!GO:0000082;G1/S transition of mitotic cell cycle;0.00199021247186981!GO:0051052;regulation of DNA metabolic process;0.0020277714464742!GO:0016251;general RNA polymerase II transcription factor activity;0.00204548852097702!GO:0003682;chromatin binding;0.00204548852097702!GO:0019752;carboxylic acid metabolic process;0.00205718489975981!GO:0006740;NADPH regeneration;0.00205718489975981!GO:0006098;pentose-phosphate shunt;0.00205718489975981!GO:0018196;peptidyl-asparagine modification;0.00206570247977622!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00206570247977622!GO:0008361;regulation of cell size;0.00210375702900338!GO:0016044;membrane organization and biogenesis;0.00210491732782436!GO:0051252;regulation of RNA metabolic process;0.00212831625314103!GO:0007052;mitotic spindle organization and biogenesis;0.00213445984403449!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00215930279698914!GO:0048500;signal recognition particle;0.00216604826099166!GO:0006405;RNA export from nucleus;0.00219780268685634!GO:0006082;organic acid metabolic process;0.00226989346091188!GO:0008234;cysteine-type peptidase activity;0.00229586810869537!GO:0012506;vesicle membrane;0.0023171996956909!GO:0016049;cell growth;0.00253673803601847!GO:0046489;phosphoinositide biosynthetic process;0.00273038796301553!GO:0008312;7S RNA binding;0.0027948334233791!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00279628601734436!GO:0008139;nuclear localization sequence binding;0.00279628601734436!GO:0005684;U2-dependent spliceosome;0.00284833301212512!GO:0015992;proton transport;0.00285144774823485!GO:0006417;regulation of translation;0.00305595340429728!GO:0032508;DNA duplex unwinding;0.0031635344988612!GO:0032392;DNA geometric change;0.0031635344988612!GO:0006818;hydrogen transport;0.00326766533643845!GO:0043492;ATPase activity, coupled to movement of substances;0.00339433697653408!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00343994034440955!GO:0006383;transcription from RNA polymerase III promoter;0.0035358815503094!GO:0016272;prefoldin complex;0.00363086605212981!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00370418709493427!GO:0065007;biological regulation;0.00376088499345522!GO:0006595;polyamine metabolic process;0.00383017299327823!GO:0030132;clathrin coat of coated pit;0.00396870454756064!GO:0005791;rough endoplasmic reticulum;0.00397627088960478!GO:0005669;transcription factor TFIID complex;0.00397627088960478!GO:0051539;4 iron, 4 sulfur cluster binding;0.00414927680315216!GO:0004527;exonuclease activity;0.00422102112109078!GO:0003690;double-stranded DNA binding;0.00427106620947525!GO:0030029;actin filament-based process;0.00428380210605912!GO:0035258;steroid hormone receptor binding;0.00428535898733269!GO:0006979;response to oxidative stress;0.00436547212275797!GO:0046519;sphingoid metabolic process;0.00440902896304461!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00448005355045565!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00452870024173548!GO:0006672;ceramide metabolic process;0.00454001524391036!GO:0005637;nuclear inner membrane;0.00486921390609191!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00501935301436761!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00502231851196978!GO:0045047;protein targeting to ER;0.00502231851196978!GO:0030658;transport vesicle membrane;0.00512328685542405!GO:0048518;positive regulation of biological process;0.00512338366376858!GO:0046966;thyroid hormone receptor binding;0.00518491116102629!GO:0045941;positive regulation of transcription;0.00518506970677946!GO:0006520;amino acid metabolic process;0.00520739910643363!GO:0007093;mitotic cell cycle checkpoint;0.00533769699799584!GO:0009116;nucleoside metabolic process;0.00537678192398892!GO:0003684;damaged DNA binding;0.00541780939354774!GO:0030134;ER to Golgi transport vesicle;0.00559352311572834!GO:0006733;oxidoreduction coenzyme metabolic process;0.0056159913366455!GO:0006695;cholesterol biosynthetic process;0.0056159913366455!GO:0050662;coenzyme binding;0.00562810772347082!GO:0007021;tubulin folding;0.00563220211301363!GO:0003746;translation elongation factor activity;0.00577299494864198!GO:0031625;ubiquitin protein ligase binding;0.00584528469687706!GO:0022890;inorganic cation transmembrane transporter activity;0.00590112209258356!GO:0019206;nucleoside kinase activity;0.00610774238295798!GO:0043065;positive regulation of apoptosis;0.00640772734601207!GO:0045893;positive regulation of transcription, DNA-dependent;0.00647984667801767!GO:0005874;microtubule;0.00647984667801767!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00647984667801767!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00647984667801767!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00651047280271296!GO:0001558;regulation of cell growth;0.0065946447812939!GO:0006350;transcription;0.00667437921832419!GO:0006739;NADP metabolic process;0.00667865963722691!GO:0000059;protein import into nucleus, docking;0.00702880578198827!GO:0007088;regulation of mitosis;0.00702880578198827!GO:0009112;nucleobase metabolic process;0.00706358392119881!GO:0030521;androgen receptor signaling pathway;0.00734394219170273!GO:0003702;RNA polymerase II transcription factor activity;0.00758230154553113!GO:0015631;tubulin binding;0.00758753861136147!GO:0043068;positive regulation of programmed cell death;0.00761601961365788!GO:0006310;DNA recombination;0.00806705509420021!GO:0045045;secretory pathway;0.00830180548714141!GO:0003711;transcription elongation regulator activity;0.0083326290547444!GO:0006950;response to stress;0.00867007640194343!GO:0065009;regulation of a molecular function;0.00877426749742304!GO:0006268;DNA unwinding during replication;0.00888078582099879!GO:0006118;electron transport;0.00889585066179732!GO:0031970;organelle envelope lumen;0.00889850733653634!GO:0006767;water-soluble vitamin metabolic process;0.00894931493559594!GO:0000776;kinetochore;0.00895103095861213!GO:0009967;positive regulation of signal transduction;0.00906670308259538!GO:0030127;COPII vesicle coat;0.00914172412532409!GO:0012507;ER to Golgi transport vesicle membrane;0.00914172412532409!GO:0006611;protein export from nucleus;0.00925537612959353!GO:0000339;RNA cap binding;0.00957327334466526!GO:0051287;NAD binding;0.00973273446375396!GO:0043022;ribosome binding;0.00979043393417708!GO:0006497;protein amino acid lipidation;0.0100832783536665!GO:0017166;vinculin binding;0.0101251904121768!GO:0006892;post-Golgi vesicle-mediated transport;0.0101251904121768!GO:0030660;Golgi-associated vesicle membrane;0.0102885615855416!GO:0031326;regulation of cellular biosynthetic process;0.0103071194121592!GO:0006144;purine base metabolic process;0.0103071194121592!GO:0006650;glycerophospholipid metabolic process;0.0104016207893437!GO:0005832;chaperonin-containing T-complex;0.0113533742376886!GO:0001726;ruffle;0.0114326430463397!GO:0043596;nuclear replication fork;0.0116784988053402!GO:0030176;integral to endoplasmic reticulum membrane;0.0120054961768877!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.012190667571095!GO:0015002;heme-copper terminal oxidase activity;0.012190667571095!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.012190667571095!GO:0004129;cytochrome-c oxidase activity;0.012190667571095!GO:0007017;microtubule-based process;0.0123793103204703!GO:0004177;aminopeptidase activity;0.0124354310026641!GO:0030031;cell projection biogenesis;0.0125252295201897!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0127761838618865!GO:0000209;protein polyubiquitination;0.0129596513006204!GO:0007040;lysosome organization and biogenesis;0.0130059853268547!GO:0009889;regulation of biosynthetic process;0.0130059853268547!GO:0043488;regulation of mRNA stability;0.0137544300463316!GO:0043487;regulation of RNA stability;0.0137544300463316!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0138787928294424!GO:0033559;unsaturated fatty acid metabolic process;0.0138787928294424!GO:0006636;unsaturated fatty acid biosynthetic process;0.0138787928294424!GO:0006984;ER-nuclear signaling pathway;0.0141433218768915!GO:0050681;androgen receptor binding;0.0143694391749617!GO:0000786;nucleosome;0.0145155201328575!GO:0005774;vacuolar membrane;0.0147464007980542!GO:0010468;regulation of gene expression;0.0147464007980542!GO:0006778;porphyrin metabolic process;0.0151107045908188!GO:0033013;tetrapyrrole metabolic process;0.0151107045908188!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0151204224053908!GO:0006007;glucose catabolic process;0.0154163266205491!GO:0016741;transferase activity, transferring one-carbon groups;0.0155360013123875!GO:0046983;protein dimerization activity;0.0156469072171201!GO:0006769;nicotinamide metabolic process;0.0157107239263492!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0163939744776555!GO:0008168;methyltransferase activity;0.0164474735081472!GO:0030503;regulation of cell redox homeostasis;0.0165387696380079!GO:0008408;3'-5' exonuclease activity;0.0166792873173075!GO:0007050;cell cycle arrest;0.016710882079542!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0170389312114046!GO:0030119;AP-type membrane coat adaptor complex;0.0170592405682638!GO:0031529;ruffle organization and biogenesis;0.0171072850299739!GO:0004197;cysteine-type endopeptidase activity;0.0174564087919846!GO:0005758;mitochondrial intermembrane space;0.0175114506711136!GO:0008022;protein C-terminus binding;0.0178428050904232!GO:0007030;Golgi organization and biogenesis;0.0183128764980032!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0187093666231378!GO:0005869;dynactin complex;0.0192310057195337!GO:0008180;signalosome;0.0193827050927247!GO:0008538;proteasome activator activity;0.0194225805707077!GO:0031902;late endosome membrane;0.0200850893050525!GO:0005862;muscle thin filament tropomyosin;0.0211568449713641!GO:0022411;cellular component disassembly;0.0212413590763418!GO:0031124;mRNA 3'-end processing;0.0212499826041706!GO:0006807;nitrogen compound metabolic process;0.0214612349832806!GO:0050811;GABA receptor binding;0.0221407507780346!GO:0004532;exoribonuclease activity;0.0221407507780346!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0221407507780346!GO:0005876;spindle microtubule;0.0221595258249822!GO:0030032;lamellipodium biogenesis;0.0221595258249822!GO:0042158;lipoprotein biosynthetic process;0.022163203606265!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.022163203606265!GO:0006749;glutathione metabolic process;0.022477371682033!GO:0032984;macromolecular complex disassembly;0.0225580275422879!GO:0030833;regulation of actin filament polymerization;0.0225935914906319!GO:0006506;GPI anchor biosynthetic process;0.0230487335871785!GO:0007034;vacuolar transport;0.0235594176793426!GO:0006376;mRNA splice site selection;0.0236912410203466!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0236912410203466!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0237290606039142!GO:0030125;clathrin vesicle coat;0.0244108039305002!GO:0030665;clathrin coated vesicle membrane;0.0244108039305002!GO:0007033;vacuole organization and biogenesis;0.0250737261044394!GO:0000096;sulfur amino acid metabolic process;0.0253839723985907!GO:0042770;DNA damage response, signal transduction;0.0254246154369329!GO:0019783;small conjugating protein-specific protease activity;0.0255793554866251!GO:0030131;clathrin adaptor complex;0.0256871899222115!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0257210687566465!GO:0043130;ubiquitin binding;0.0258771899860832!GO:0032182;small conjugating protein binding;0.0258771899860832!GO:0004674;protein serine/threonine kinase activity;0.0259113258909202!GO:0004003;ATP-dependent DNA helicase activity;0.0262815017509647!GO:0007346;regulation of progression through mitotic cell cycle;0.0263903119779923!GO:0006220;pyrimidine nucleotide metabolic process;0.0268102930966676!GO:0006643;membrane lipid metabolic process;0.0269943951647377!GO:0008320;protein transmembrane transporter activity;0.0270208149096603!GO:0019362;pyridine nucleotide metabolic process;0.0270905802836006!GO:0000922;spindle pole;0.027843760928546!GO:0031901;early endosome membrane;0.027843760928546!GO:0022884;macromolecule transmembrane transporter activity;0.027843760928546!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.027843760928546!GO:0004518;nuclease activity;0.027843760928546!GO:0015036;disulfide oxidoreductase activity;0.0280366160333517!GO:0008383;manganese superoxide dismutase activity;0.0282761238377237!GO:0001315;age-dependent response to reactive oxygen species;0.0282761238377237!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0285263762565559!GO:0030041;actin filament polymerization;0.0289892638293004!GO:0009451;RNA modification;0.0292446072041633!GO:0048037;cofactor binding;0.0292541798274015!GO:0035035;histone acetyltransferase binding;0.0297350611840757!GO:0006338;chromatin remodeling;0.0300077565622166!GO:0045892;negative regulation of transcription, DNA-dependent;0.0304453239882652!GO:0000228;nuclear chromosome;0.0304492436408356!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0306835130695852!GO:0048468;cell development;0.031019825322277!GO:0030384;phosphoinositide metabolic process;0.031019825322277!GO:0044437;vacuolar part;0.0310314458855711!GO:0030518;steroid hormone receptor signaling pathway;0.0310464076234204!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0311807684610465!GO:0006360;transcription from RNA polymerase I promoter;0.0314628733578052!GO:0043241;protein complex disassembly;0.031552628476691!GO:0043189;H4/H2A histone acetyltransferase complex;0.0318070757292505!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0320457930055413!GO:0046128;purine ribonucleoside metabolic process;0.0320718052079558!GO:0042278;purine nucleoside metabolic process;0.0320718052079558!GO:0004843;ubiquitin-specific protease activity;0.0323387740268302!GO:0009303;rRNA transcription;0.0325336514828518!GO:0042168;heme metabolic process;0.0327041360580654!GO:0043624;cellular protein complex disassembly;0.0327041360580654!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0331927183500736!GO:0009124;nucleoside monophosphate biosynthetic process;0.0340872884639307!GO:0009123;nucleoside monophosphate metabolic process;0.0340872884639307!GO:0016790;thiolester hydrolase activity;0.0341924237130524!GO:0006275;regulation of DNA replication;0.0341924237130524!GO:0008637;apoptotic mitochondrial changes;0.0341924237130524!GO:0051881;regulation of mitochondrial membrane potential;0.0343832678603887!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0345070646128844!GO:0010257;NADH dehydrogenase complex assembly;0.0345070646128844!GO:0033108;mitochondrial respiratory chain complex assembly;0.0345070646128844!GO:0006505;GPI anchor metabolic process;0.0346998773924284!GO:0030149;sphingolipid catabolic process;0.035171833934369!GO:0007264;small GTPase mediated signal transduction;0.0356770745130373!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.035796528271974!GO:0009308;amine metabolic process;0.0361400849946623!GO:0051128;regulation of cellular component organization and biogenesis;0.0361512213683838!GO:0045185;maintenance of protein localization;0.0361512213683838!GO:0000303;response to superoxide;0.0361512213683838!GO:0006519;amino acid and derivative metabolic process;0.0361512213683838!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0361566280413428!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0362308856954906!GO:0005765;lysosomal membrane;0.0367761519940606!GO:0046822;regulation of nucleocytoplasmic transport;0.0368298567596713!GO:0043433;negative regulation of transcription factor activity;0.0369286559429678!GO:0009081;branched chain family amino acid metabolic process;0.0379743919913361!GO:0047485;protein N-terminus binding;0.0382047180179695!GO:0006458;'de novo' protein folding;0.0382623799861906!GO:0051084;'de novo' posttranslational protein folding;0.0382623799861906!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.038703759463755!GO:0000910;cytokinesis;0.0387247966029425!GO:0004185;serine carboxypeptidase activity;0.0394906452594001!GO:0006779;porphyrin biosynthetic process;0.0395046236462553!GO:0033014;tetrapyrrole biosynthetic process;0.0395046236462553!GO:0009893;positive regulation of metabolic process;0.0396267721579695!GO:0005784;translocon complex;0.0399690354900839!GO:0008092;cytoskeletal protein binding;0.0401251122859209!GO:0035267;NuA4 histone acetyltransferase complex;0.0402281676060645!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0405006069595819!GO:0016407;acetyltransferase activity;0.0407708766084171!GO:0004221;ubiquitin thiolesterase activity;0.0407708766084171!GO:0031461;cullin-RING ubiquitin ligase complex;0.0407943051823226!GO:0006289;nucleotide-excision repair;0.0411804915329151!GO:0006308;DNA catabolic process;0.0414813097414238!GO:0006284;base-excision repair;0.0415973282516708!GO:0044438;microbody part;0.0431327024624692!GO:0044439;peroxisomal part;0.0431327024624692!GO:0008601;protein phosphatase type 2A regulator activity;0.0432983770675558!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0434026185061902!GO:0031371;ubiquitin conjugating enzyme complex;0.0442248683746678!GO:0032507;maintenance of cellular protein localization;0.0442248683746678!GO:0008287;protein serine/threonine phosphatase complex;0.0451487725090468!GO:0009161;ribonucleoside monophosphate metabolic process;0.0451487725090468!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0451487725090468!GO:0030508;thiol-disulfide exchange intermediate activity;0.0451487725090468!GO:0005732;small nucleolar ribonucleoprotein complex;0.0451487725090468!GO:0046982;protein heterodimerization activity;0.0465995143882416!GO:0006378;mRNA polyadenylation;0.0466513685778304!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0466513685778304!GO:0045039;protein import into mitochondrial inner membrane;0.0466513685778304!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0468350580105174!GO:0006596;polyamine biosynthetic process;0.0470927654455823!GO:0051059;NF-kappaB binding;0.0472400459009586!GO:0043601;nuclear replisome;0.0472400459009586!GO:0030894;replisome;0.0472400459009586!GO:0050178;phenylpyruvate tautomerase activity;0.0475697741611725!GO:0022406;membrane docking;0.0477395117354335!GO:0048278;vesicle docking;0.0477395117354335!GO:0051101;regulation of DNA binding;0.0477395117354335!GO:0000123;histone acetyltransferase complex;0.0481458061775728 | |||
|sample_id=10858 | |sample_id=10858 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 99: | ||
|sample_tissue=mesothelium | |sample_tissue=mesothelium | ||
|top_motifs=bHLH_family:1.85475422615;HES1:1.64533084009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.30546315327;HIF1A:1.27079230235;TAL1_TCF{3,4,12}:1.09953141101;ZBTB16:0.969231203837;ATF6:0.760881135746;NR3C1:0.74801014131;AIRE:0.733678720997;IRF7:0.729275200711;EVI1:0.727203651251;NR6A1:0.645242010887;NKX3-1:0.624654814317;NFE2L1:0.623327603103;MYOD1:0.619933392978;PPARG:0.59835500254;ESRRA:0.573932042142;UFEwm:0.572129666932;FOXM1:0.569053322623;RXR{A,B,G}:0.565264090613;E2F1..5:0.556129153469;IRF1,2:0.526121757172;TFDP1:0.516367351124;ZBTB6:0.501703402242;NKX2-2,8:0.492000971777;NFE2:0.491754410177;ADNP_IRX_SIX_ZHX:0.479074513679;GZF1:0.474663931135;HOXA9_MEIS1:0.465007907845;TEAD1:0.463439182963;HNF4A_NR2F1,2:0.452537138423;SREBF1,2:0.443613562318;FOX{I1,J2}:0.43705426188;BACH2:0.43517353567;HSF1,2:0.430535866899;MYB:0.399439578875;NFE2L2:0.384773319219;PAX1,9:0.379630517957;POU1F1:0.368887281164;PDX1:0.361947637723;FOXQ1:0.356061627943;ELK1,4_GABP{A,B1}:0.340463611819;AHR_ARNT_ARNT2:0.269779483875;POU5F1:0.265501626013;YY1:0.261717690207;LHX3,4:0.249155646563;FOXD3:0.230968199129;GFI1B:0.223370314073;RXRA_VDR{dimer}:0.205039570248;NFY{A,B,C}:0.176016408562;NFIX:0.150442449529;IKZF1:0.14505686745;PRRX1,2:0.135152719045;HOX{A5,B5}:0.135031081796;ZNF384:0.113174026889;FOS_FOS{B,L1}_JUN{B,D}:0.111813624756;CEBPA,B_DDIT3:0.10647399479;PAX8:0.0905765223576;TBX4,5:0.0874355135443;HIC1:0.0687293297935;STAT2,4,6:0.0673274402466;MAFB:0.0567868986148;POU3F1..4:0.0530024214264;ONECUT1,2:0.0315819703971;NRF1:0.0282481187072;TFAP2B:0.0261797857049;LMO2:-0.0208409748024;PAX4:-0.0279146794657;PAX3,7:-0.0312166731855;TLX1..3_NFIC{dimer}:-0.031855074487;CDX1,2,4:-0.0460102678391;FOXN1:-0.0498641892173;PITX1..3:-0.0607452312702;HOX{A4,D4}:-0.0634365276614;HMX1:-0.063458023078;ALX4:-0.0716908647562;ARID5B:-0.080346717509;FOSL2:-0.0904192895586;HLF:-0.103687153699;ATF5_CREB3:-0.106211737466;RFX1:-0.110590555911;STAT5{A,B}:-0.114877496162;TOPORS:-0.119845405582;GFI1:-0.125140955521;TP53:-0.132480201028;NKX6-1,2:-0.138844931476;XCPE1{core}:-0.141937357533;REST:-0.148648806895;TBP:-0.164748868143;STAT1,3:-0.166041238761;OCT4_SOX2{dimer}:-0.168981124892;EN1,2:-0.171441527233;BREu{core}:-0.175002632244;GATA4:-0.187877731025;DMAP1_NCOR{1,2}_SMARC:-0.198719773295;PBX1:-0.202305089164;GTF2A1,2:-0.2039952371;NKX2-3_NKX2-5:-0.205694980337;ALX1:-0.208024349692;NKX3-2:-0.219171369662;TFCP2:-0.220484851961;FOXL1:-0.221322826789;HNF1A:-0.223592863881;NANOG:-0.237372621368;NFKB1_REL_RELA:-0.243831471938;FOXP3:-0.252943308226;SP1:-0.254254786906;KLF4:-0.254903010918;ELF1,2,4:-0.255621027843;ATF4:-0.256659510684;SNAI1..3:-0.27237296016;EP300:-0.272386147302;IKZF2:-0.287682676745;NKX2-1,4:-0.296052749213;CDC5L:-0.298280060676;ZNF143:-0.301348807496;NR1H4:-0.303186554342;PAX5:-0.306423180299;MYFfamily:-0.313581835935;GTF2I:-0.314762566747;NHLH1,2:-0.340361731788;T:-0.345183764024;LEF1_TCF7_TCF7L1,2:-0.35602596149;ESR1:-0.366575257926;MED-1{core}:-0.38004456587;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.381791378805;ETS1,2:-0.384861148631;SOX{8,9,10}:-0.39029579233;SMAD1..7,9:-0.406212577031;PAX2:-0.414964643144;ZIC1..3:-0.420396552193;PAX6:-0.421339609423;TEF:-0.433539953345;PRDM1:-0.441437298326;SPIB:-0.445977207626;MYBL2:-0.449218028813;CUX2:-0.47697438043;ZEB1:-0.482979073672;FOXO1,3,4:-0.486888437109;RREB1:-0.492225069028;POU6F1:-0.4935304081;EGR1..3:-0.501287588583;RFX2..5_RFXANK_RFXAP:-0.508268116161;FOXP1:-0.515401934388;SPI1:-0.515666621781;RORA:-0.548810791587;RUNX1..3:-0.551675849561;NFIL3:-0.552667517684;EBF1:-0.555825840247;SRF:-0.562865551089;RBPJ:-0.564424349456;HAND1,2:-0.572608955703;CREB1:-0.574504256073;FOX{D1,D2}:-0.576240332932;TFAP2{A,C}:-0.58193857566;SPZ1:-0.589475409885;HOX{A6,A7,B6,B7}:-0.595277824667;FOX{F1,F2,J1}:-0.598943511355;POU2F1..3:-0.616217282688;HMGA1,2:-0.627128940051;FOXA2:-0.630348835758;GLI1..3:-0.646804506055;MZF1:-0.669828344833;PATZ1:-0.673828375543;MEF2{A,B,C,D}:-0.678620118301;MTF1:-0.692923646759;ZNF423:-0.712448389696;HBP1_HMGB_SSRP1_UBTF:-0.716545351642;GATA6:-0.717783415336;SOX17:-0.720674354809;XBP1:-0.785267843574;DBP:-0.787521957036;SOX2:-0.78921770486;MAZ:-0.824746020248;ZNF148:-0.830397312056;NR5A1,2:-0.84402507529;ZNF238:-0.847447951086;NFATC1..3:-0.88072725166;ZFP161:-0.895444618672;MTE{core}:-0.90060255102;TGIF1:-0.926688880545;VSX1,2:-0.934370159826;TFAP4:-0.940415486392;JUN:-0.974553908349;SOX5:-1.00556112584;AR:-1.02243830832;ATF2:-1.02498476414;BPTF:-1.07728697298;CRX:-1.18210660471;GCM1,2:-1.205328513;TLX2:-1.41880721647;NANOG{mouse}:-1.42692102406 | |top_motifs=bHLH_family:1.85475422615;HES1:1.64533084009;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.30546315327;HIF1A:1.27079230235;TAL1_TCF{3,4,12}:1.09953141101;ZBTB16:0.969231203837;ATF6:0.760881135746;NR3C1:0.74801014131;AIRE:0.733678720997;IRF7:0.729275200711;EVI1:0.727203651251;NR6A1:0.645242010887;NKX3-1:0.624654814317;NFE2L1:0.623327603103;MYOD1:0.619933392978;PPARG:0.59835500254;ESRRA:0.573932042142;UFEwm:0.572129666932;FOXM1:0.569053322623;RXR{A,B,G}:0.565264090613;E2F1..5:0.556129153469;IRF1,2:0.526121757172;TFDP1:0.516367351124;ZBTB6:0.501703402242;NKX2-2,8:0.492000971777;NFE2:0.491754410177;ADNP_IRX_SIX_ZHX:0.479074513679;GZF1:0.474663931135;HOXA9_MEIS1:0.465007907845;TEAD1:0.463439182963;HNF4A_NR2F1,2:0.452537138423;SREBF1,2:0.443613562318;FOX{I1,J2}:0.43705426188;BACH2:0.43517353567;HSF1,2:0.430535866899;MYB:0.399439578875;NFE2L2:0.384773319219;PAX1,9:0.379630517957;POU1F1:0.368887281164;PDX1:0.361947637723;FOXQ1:0.356061627943;ELK1,4_GABP{A,B1}:0.340463611819;AHR_ARNT_ARNT2:0.269779483875;POU5F1:0.265501626013;YY1:0.261717690207;LHX3,4:0.249155646563;FOXD3:0.230968199129;GFI1B:0.223370314073;RXRA_VDR{dimer}:0.205039570248;NFY{A,B,C}:0.176016408562;NFIX:0.150442449529;IKZF1:0.14505686745;PRRX1,2:0.135152719045;HOX{A5,B5}:0.135031081796;ZNF384:0.113174026889;FOS_FOS{B,L1}_JUN{B,D}:0.111813624756;CEBPA,B_DDIT3:0.10647399479;PAX8:0.0905765223576;TBX4,5:0.0874355135443;HIC1:0.0687293297935;STAT2,4,6:0.0673274402466;MAFB:0.0567868986148;POU3F1..4:0.0530024214264;ONECUT1,2:0.0315819703971;NRF1:0.0282481187072;TFAP2B:0.0261797857049;LMO2:-0.0208409748024;PAX4:-0.0279146794657;PAX3,7:-0.0312166731855;TLX1..3_NFIC{dimer}:-0.031855074487;CDX1,2,4:-0.0460102678391;FOXN1:-0.0498641892173;PITX1..3:-0.0607452312702;HOX{A4,D4}:-0.0634365276614;HMX1:-0.063458023078;ALX4:-0.0716908647562;ARID5B:-0.080346717509;FOSL2:-0.0904192895586;HLF:-0.103687153699;ATF5_CREB3:-0.106211737466;RFX1:-0.110590555911;STAT5{A,B}:-0.114877496162;TOPORS:-0.119845405582;GFI1:-0.125140955521;TP53:-0.132480201028;NKX6-1,2:-0.138844931476;XCPE1{core}:-0.141937357533;REST:-0.148648806895;TBP:-0.164748868143;STAT1,3:-0.166041238761;OCT4_SOX2{dimer}:-0.168981124892;EN1,2:-0.171441527233;BREu{core}:-0.175002632244;GATA4:-0.187877731025;DMAP1_NCOR{1,2}_SMARC:-0.198719773295;PBX1:-0.202305089164;GTF2A1,2:-0.2039952371;NKX2-3_NKX2-5:-0.205694980337;ALX1:-0.208024349692;NKX3-2:-0.219171369662;TFCP2:-0.220484851961;FOXL1:-0.221322826789;HNF1A:-0.223592863881;NANOG:-0.237372621368;NFKB1_REL_RELA:-0.243831471938;FOXP3:-0.252943308226;SP1:-0.254254786906;KLF4:-0.254903010918;ELF1,2,4:-0.255621027843;ATF4:-0.256659510684;SNAI1..3:-0.27237296016;EP300:-0.272386147302;IKZF2:-0.287682676745;NKX2-1,4:-0.296052749213;CDC5L:-0.298280060676;ZNF143:-0.301348807496;NR1H4:-0.303186554342;PAX5:-0.306423180299;MYFfamily:-0.313581835935;GTF2I:-0.314762566747;NHLH1,2:-0.340361731788;T:-0.345183764024;LEF1_TCF7_TCF7L1,2:-0.35602596149;ESR1:-0.366575257926;MED-1{core}:-0.38004456587;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.381791378805;ETS1,2:-0.384861148631;SOX{8,9,10}:-0.39029579233;SMAD1..7,9:-0.406212577031;PAX2:-0.414964643144;ZIC1..3:-0.420396552193;PAX6:-0.421339609423;TEF:-0.433539953345;PRDM1:-0.441437298326;SPIB:-0.445977207626;MYBL2:-0.449218028813;CUX2:-0.47697438043;ZEB1:-0.482979073672;FOXO1,3,4:-0.486888437109;RREB1:-0.492225069028;POU6F1:-0.4935304081;EGR1..3:-0.501287588583;RFX2..5_RFXANK_RFXAP:-0.508268116161;FOXP1:-0.515401934388;SPI1:-0.515666621781;RORA:-0.548810791587;RUNX1..3:-0.551675849561;NFIL3:-0.552667517684;EBF1:-0.555825840247;SRF:-0.562865551089;RBPJ:-0.564424349456;HAND1,2:-0.572608955703;CREB1:-0.574504256073;FOX{D1,D2}:-0.576240332932;TFAP2{A,C}:-0.58193857566;SPZ1:-0.589475409885;HOX{A6,A7,B6,B7}:-0.595277824667;FOX{F1,F2,J1}:-0.598943511355;POU2F1..3:-0.616217282688;HMGA1,2:-0.627128940051;FOXA2:-0.630348835758;GLI1..3:-0.646804506055;MZF1:-0.669828344833;PATZ1:-0.673828375543;MEF2{A,B,C,D}:-0.678620118301;MTF1:-0.692923646759;ZNF423:-0.712448389696;HBP1_HMGB_SSRP1_UBTF:-0.716545351642;GATA6:-0.717783415336;SOX17:-0.720674354809;XBP1:-0.785267843574;DBP:-0.787521957036;SOX2:-0.78921770486;MAZ:-0.824746020248;ZNF148:-0.830397312056;NR5A1,2:-0.84402507529;ZNF238:-0.847447951086;NFATC1..3:-0.88072725166;ZFP161:-0.895444618672;MTE{core}:-0.90060255102;TGIF1:-0.926688880545;VSX1,2:-0.934370159826;TFAP4:-0.940415486392;JUN:-0.974553908349;SOX5:-1.00556112584;AR:-1.02243830832;ATF2:-1.02498476414;BPTF:-1.07728697298;CRX:-1.18210660471;GCM1,2:-1.205328513;TLX2:-1.41880721647;NANOG{mouse}:-1.42692102406 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10858-111G3;search_select_hide=table117:FF:10858-111G3 | |||
}} | }} |
Latest revision as of 16:24, 3 June 2020
Name: | mesothelioma cell line:ONE58 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13075 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13075
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13075
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.38 |
10 | 10 | 0.179 |
100 | 100 | 0.0064 |
101 | 101 | 0.745 |
102 | 102 | 0.781 |
103 | 103 | 0.444 |
104 | 104 | 0.698 |
105 | 105 | 0.00799 |
106 | 106 | 0.388 |
107 | 107 | 0.41 |
108 | 108 | 0.982 |
109 | 109 | 0.0485 |
11 | 11 | 0.738 |
110 | 110 | 0.459 |
111 | 111 | 0.133 |
112 | 112 | 0.756 |
113 | 113 | 0.0992 |
114 | 114 | 0.0846 |
115 | 115 | 0.0532 |
116 | 116 | 0.19 |
117 | 117 | 0.286 |
118 | 118 | 0.0145 |
119 | 119 | 0.936 |
12 | 12 | 0.0954 |
120 | 120 | 0.104 |
121 | 121 | 0.507 |
122 | 122 | 0.723 |
123 | 123 | 0.729 |
124 | 124 | 0.484 |
125 | 125 | 0.412 |
126 | 126 | 0.342 |
127 | 127 | 0.235 |
128 | 128 | 0.00877 |
129 | 129 | 0.637 |
13 | 13 | 0.00908 |
130 | 130 | 0.636 |
131 | 131 | 0.902 |
132 | 132 | 0.583 |
133 | 133 | 0.495 |
134 | 134 | 0.0302 |
135 | 135 | 0.0528 |
136 | 136 | 0.0888 |
137 | 137 | 0.992 |
138 | 138 | 0.905 |
139 | 139 | 0.185 |
14 | 14 | 0.23 |
140 | 140 | 0.822 |
141 | 141 | 0.761 |
142 | 142 | 0.334 |
143 | 143 | 0.322 |
144 | 144 | 0.769 |
145 | 145 | 0.0371 |
146 | 146 | 0.25 |
147 | 147 | 0.344 |
148 | 148 | 0.168 |
149 | 149 | 0.8 |
15 | 15 | 0.0309 |
150 | 150 | 0.316 |
151 | 151 | 0.601 |
152 | 152 | 0.0645 |
153 | 153 | 0.133 |
154 | 154 | 0.324 |
155 | 155 | 0.6 |
156 | 156 | 0.547 |
157 | 157 | 0.519 |
158 | 158 | 0.46 |
159 | 159 | 0.653 |
16 | 16 | 0.975 |
160 | 160 | 0.797 |
161 | 161 | 0.261 |
162 | 162 | 0.779 |
163 | 163 | 0.158 |
164 | 164 | 0.208 |
165 | 165 | 0.719 |
166 | 166 | 0.898 |
167 | 167 | 0.446 |
168 | 168 | 0.0531 |
169 | 169 | 0.0202 |
17 | 17 | 0.686 |
18 | 18 | 0.11 |
19 | 19 | 0.554 |
2 | 2 | 0.575 |
20 | 20 | 0.495 |
21 | 21 | 0.117 |
22 | 22 | 0.376 |
23 | 23 | 0.53 |
24 | 24 | 0.449 |
25 | 25 | 0.993 |
26 | 26 | 0.734 |
27 | 27 | 0.248 |
28 | 28 | 0.199 |
29 | 29 | 0.0136 |
3 | 3 | 0.617 |
30 | 30 | 0.429 |
31 | 31 | 0.525 |
32 | 32 | 0.293 |
33 | 33 | 0.0508 |
34 | 34 | 0.105 |
35 | 35 | 0.774 |
36 | 36 | 0.372 |
37 | 37 | 0.0202 |
38 | 38 | 0.872 |
39 | 39 | 0.917 |
4 | 4 | 0.136 |
40 | 40 | 0.048 |
41 | 41 | 0.157 |
42 | 42 | 0.762 |
43 | 43 | 0.348 |
44 | 44 | 0.0955 |
45 | 45 | 0.507 |
46 | 46 | 0.928 |
47 | 47 | 0.0831 |
48 | 48 | 0.278 |
49 | 49 | 0.406 |
5 | 5 | 0.481 |
50 | 50 | 0.776 |
51 | 51 | 0.388 |
52 | 52 | 0.41 |
53 | 53 | 0.302 |
54 | 54 | 0.393 |
55 | 55 | 0.381 |
56 | 56 | 0.421 |
57 | 57 | 0.325 |
58 | 58 | 0.313 |
59 | 59 | 0.132 |
6 | 6 | 0.756 |
60 | 60 | 0.837 |
61 | 61 | 0.0675 |
62 | 62 | 0.557 |
63 | 63 | 0.813 |
64 | 64 | 0.831 |
65 | 65 | 0.937 |
66 | 66 | 0.0392 |
67 | 67 | 0.666 |
68 | 68 | 0.896 |
69 | 69 | 0.731 |
7 | 7 | 0.969 |
70 | 70 | 0.663 |
71 | 71 | 0.00602 |
72 | 72 | 0.981 |
73 | 73 | 0.0123 |
74 | 74 | 0.352 |
75 | 75 | 0.532 |
76 | 76 | 0.446 |
77 | 77 | 0.562 |
78 | 78 | 0.862 |
79 | 79 | 0.865 |
8 | 8 | 0.0384 |
80 | 80 | 0.00991 |
81 | 81 | 0.41 |
82 | 82 | 0.846 |
83 | 83 | 0.748 |
84 | 84 | 0.0182 |
85 | 85 | 0.218 |
86 | 86 | 0.461 |
87 | 87 | 0.00831 |
88 | 88 | 0.971 |
89 | 89 | 0.374 |
9 | 9 | 0.0775 |
90 | 90 | 0.0617 |
91 | 91 | 0.576 |
92 | 92 | 0.821 |
93 | 93 | 0.154 |
94 | 94 | 0.443 |
95 | 95 | 0.048 |
96 | 96 | 0.903 |
97 | 97 | 0.887 |
98 | 98 | 0.584 |
99 | 99 | 0.335 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13075
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)