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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005521
|DRA_sample_Accession=CAGE@SAMD00005521
|accession_numbers=CAGE;DRX007945;DRR008817;DRZ000242;DRZ001627
|accession_numbers=CAGE;DRX007945;DRR008817;DRZ000242;DRZ001627;DRZ011592;DRZ012977
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.21!159.64!LHX9;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.01!101.09!SEBOX;;chr11:61520075..61520136,+!p1@C11orf9!1.78!122.14!C11orf9;;chr6:10412600..10412637,-!p1@TFAP2A!1.71!81.57!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.69!57.67!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.67!52.85!BNC1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.67!45.83!SEBOX;;chr6:126240380..126240430,+!p2@NCOA7!1.51!79.82!NCOA7;;chr21:38071430..38071456,+!p1@SIM2!1.49!30.04!SIM2;;chr7:27153454..27153469,-!p2@HOXA3!1.45!26.97!HOXA3;;chr8:37963466..37963506,+!p3@ASH2L!1.37!27.85!ASH2L;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.36!22.15!SEBOX;;chr18:19749541..19749557,+!p1@GATA6!1.33!62.93!GATA6;;chr18:19749386..19749404,+!p2@GATA6!1.28!25.66!GATA6;;chr6:10412392..10412409,-!p4@TFAP2A!1.25!19.30!TFAP2A;;chr7:1577899..1577943,+!p3@MAFK!1.23!16.01!MAFK;;chr12:54380404..54380433,+!p3@HOXC10!1.20!14.69!HOXC10;;chr6:126240356..126240379,+!p7@NCOA7!1.15!16.23!NCOA7;;chr1:201979703..201979721,+!p2@ELF3!1.12!12.06!ELF3;;chr20:2673383..2673441,+!p1@EBF4!1.09!18.20!EBF4;;chr1:201979743..201979762,+!p1@ELF3!1.09!11.18!ELF3;;chr8:37963407..37963454,+!p2@ASH2L!1.06!31.36!ASH2L;;chr16:79633894..79633954,-!p3@MAF!1.06!20.17!MAF;;chr5:134369905..134369972,-!p1@PITX1!1.06!16.01!PITX1;;chr15:80696703..80696754,+!p1@ARNT2!1.06!14.03!ARNT2;;chr1:164528410..164528428,+!p1@PBX1!1.05!78.28!PBX1;;chr16:67881588..67881612,-!p2@CENPT!1.03!13.38!CENPT;;chr17:46682321..46682362,-!p1@HOXB6!1.03!9.65!HOXB6;;chr6:10415484..10415508,-!p3@TFAP2A!1.03!9.65!TFAP2A;;chr7:27183263..27183284,-!p2@HOXA5!1.03!9.65!HOXA5;;chr21:38071403..38071428,+!p2@SIM2!1.03!9.65!SIM2;;chr6:1312325..1312340,+!p1@FOXQ1!1.02!15.57!FOXQ1;;chr5:3595977..3595999,+!p1@IRX1!1.02!9.43!IRX1;;chr5:92919100..92919135,+!p3@NR2F1!1.01!11.40!NR2F1;;chr6:28321909..28321965,-!p3@ZNF323!1.01!9.21!ZNF323;;chr7:27196267..27196311,-!p1@HOXA7!1.00!8.99!HOXA7;;chr4:188916918..188916942,+!p1@ZFP42!1.00!8.99!ZFP42;;chr7:27183291..27183324,-!p1@HOXA5!0.99!8.77!HOXA5;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.77!GATA4;;chr6:10412576..10412599,-!p5@TFAP2A!0.98!8.55!TFAP2A;;chr1:158985493..158985535,+!p4@IFI16!0.96!12.72!IFI16;;chr6:85473156..85473210,-!p2@TBX18!0.96!9.87!TBX18;;chr20:50721803..50721857,-!p2@ZFP64!0.94!12.28!ZFP64;;chr6:1389789..1389821,+!p1@FOXF2!0.94!10.74!FOXF2;;chr15:83953373..83953386,-!p2@BNC1!0.94!7.67!BNC1;;chr12:54332608..54332636,+!p1@HOXC13!0.94!7.67!HOXC13;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.67!KDM5D;;chr17:46703687..46703740,-!p1@HOXB9!0.93!7.46!HOXB9;;chr7:27170359..27170381,-!p1@HOXA4!0.93!7.46!HOXA4;;chr12:54402745..54402788,+!p1@HOXC8!0.93!7.46!HOXC8;;chr7:35293685..35293718,-!p1@TBX20!0.90!7.02!TBX20;;chr7:27142290..27142310,-!p1@HOXA2!0.89!6.80!HOXA2;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.78!RUNX1;;chr5:2751762..2751784,-!p1@IRX2!0.88!6.58!IRX2;;chr5:3595934..3595957,+!p2@IRX1!0.88!6.58!IRX1;;chr1:164528445..164528459,+!p2@PBX1!0.87!20.83!PBX1;;chr18:19749517..19749531,+!p3@GATA6!0.86!11.40!GATA6;;chr19:13134772..13134822,+!p2@NFIX!0.84!8.99!NFIX;;chr21:38071462..38071474,+!p3@SIM2!0.84!5.92!SIM2;;chr7:27153428..27153440,-!p3@HOXA3!0.84!5.92!HOXA3;;chr7:27169801..27169844,-!p2@HOXA4!0.84!5.92!HOXA4;;chr10:28034739..28034756,-!p1@MKX!0.84!5.92!MKX;;chr16:79634595..79634620,-!p2@MAF!0.83!10.96!MAF;;chr6:134210243..134210257,+!p1@TCF21!0.83!5.70!TCF21;;chr20:42295745..42295765,+!p1@MYBL2!0.82!98.90!MYBL2;;chr16:79634624..79634642,-!p1@MAF!0.82!23.46!MAF;;chr6:85474299..85474324,-!p1@TBX18!0.81!10.31!TBX18;;chr4:111558135..111558198,-!p2@PITX2!0.81!5.48!PITX2;;chr2:239756671..239756732,+!p1@TWIST2!0.80!18.20!TWIST2;;chr11:46299539..46299620,+!p2@CREB3L1!0.80!9.43!CREB3L1;;chr1:164528911..164528940,+!p7@PBX1!0.80!8.11!PBX1;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.46!HOXB7;;chr6:28321971..28321995,-!p1@ZNF323!0.80!5.26!ZNF323;;chr7:1577076..1577095,+!p5@MAFK!0.80!5.26!MAFK;;chr1:197886665..197886732,+!p3@LHX9!0.80!5.26!LHX9;;chr5:92918919..92918942,+!p1@NR2F1!0.79!24.78!NR2F1;;chr2:19558373..19558392,-!p1@OSR1!0.79!15.13!OSR1;;chr12:104531823..104531849,-!p5@NFYB!0.78!10.96!NFYB;;chr6:126240463..126240489,+!p6@NCOA7!0.78!5.70!NCOA7;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.78!5.04!HOXC5;;chr13:73633131..73633149,+!p1@KLF5!0.77!56.79!KLF5;;chr7:27153613..27153630,-!p6@HOXA3!0.77!4.82!HOXA3;;chr7:27190547..27190591,-!p1@HOXA6!0.77!4.82!HOXA6;;chr6:21597765..21597779,+!p2@SOX4!0.76!42.32!SOX4;;chr11:46299199..46299233,+!p1@CREB3L1!0.76!26.75!CREB3L1;;chr21:47063625..47063658,+!p1@PCBP3!0.76!22.59!PCBP3;;chr12:124873357..124873401,-!p1@NCOR2!0.75!59.86!NCOR2;;chr8:72756063..72756125,-!p1@MSC!0.75!10.09!MSC;;chr6:126240442..126240459,+!p4@NCOA7!0.75!6.14!NCOA7;;chr15:80843484..80843499,+!p5@ARNT2!0.75!4.60!ARNT2;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.60!ZFY;;chr2:176994408..176994492,+!p1@HOXD8!0.75!4.60!HOXD8;;chr6:19837592..19837621,+!p1@ID4!0.74!30.48!ID4;;chr3:114343768..114343822,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Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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Line 51: Line 60:
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Line 90: Line 100:
|top_motifs=bHLH_family:1.83514996867;HOX{A5,B5}:1.58362781535;GZF1:1.26147194293;TEAD1:1.20760922509;HSF1,2:1.16506423154;LMO2:1.12312772388;ZNF384:1.1217271027;AIRE:1.06091608843;XCPE1{core}:1.01592574859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.954866789291;TEF:0.858554019136;TOPORS:0.772013373012;PAX6:0.755415254397;POU1F1:0.712330415982;EP300:0.693763402898;NR3C1:0.670748046672;ADNP_IRX_SIX_ZHX:0.662733083085;ELK1,4_GABP{A,B1}:0.657166097656;PAX4:0.644117106719;E2F1..5:0.643489038946;TFAP2B:0.559056593587;EVI1:0.554678789293;TP53:0.531574334237;NFE2L1:0.527238781737;TLX1..3_NFIC{dimer}:0.519419094362;ARID5B:0.4955181904;ZEB1:0.486437353429;EBF1:0.45376051929;FOXM1:0.451276948367;STAT2,4,6:0.439889563846;LHX3,4:0.415550088054;ZNF423:0.404250690154;UFEwm:0.379290320955;RXR{A,B,G}:0.367185509583;SPZ1:0.357158356381;SNAI1..3:0.322456282055;HLF:0.318108461859;PAX1,9:0.302651484347;ZNF143:0.298725074217;MAZ:0.265706158123;HNF4A_NR2F1,2:0.259916050374;GLI1..3:0.254690865869;STAT1,3:0.24021279424;EN1,2:0.23815572277;ZBTB16:0.23559580016;ESR1:0.234066209815;RFX1:0.224316560843;HIF1A:0.218849882034;PRRX1,2:0.205063523591;HIC1:0.199071555398;SOX17:0.190067749432;GFI1B:0.184895416586;MTE{core}:0.183037686787;LEF1_TCF7_TCF7L1,2:0.158969631244;TFDP1:0.158264314851;PAX5:0.155483547716;NR6A1:0.148306694766;GTF2A1,2:0.145989079072;SMAD1..7,9:0.133486109922;MTF1:0.124974712805;SP1:0.121645359418;NKX6-1,2:0.118407781465;GFI1:0.113464905306;NRF1:0.102253204471;SREBF1,2:0.0976915841994;SOX2:0.0906987714527;REST:0.0852615132364;IRF7:0.0844715448407;ESRRA:0.0778122628943;ATF4:0.0775266070125;NKX3-2:0.0732915143289;IKZF1:0.0686810089592;NFY{A,B,C}:0.0629437909324;KLF4:0.0602928479021;PRDM1:0.0585159424107;TFAP2{A,C}:0.0482926938342;TAL1_TCF{3,4,12}:0.0371234047645;ONECUT1,2:0.0358383266148;PAX8:0.0350408332996;ZBTB6:0.0342990465229;GATA4:0.0286400842479;NKX3-1:0.0110088049255;GTF2I:0.00860806276193;TFCP2:0.00386010659258;MZF1:-0.0171936724841;TBP:-0.0254436296187;EGR1..3:-0.0370709960564;POU5F1:-0.0423065548584;HNF1A:-0.0529462064882;BACH2:-0.0636547234248;MAFB:-0.0669302699319;HES1:-0.0701085659648;CEBPA,B_DDIT3:-0.0843121154837;TLX2:-0.0845762611806;FOSL2:-0.0963190892463;FOXQ1:-0.101653014062;FOX{D1,D2}:-0.117038767489;IRF1,2:-0.119449448371;FOS_FOS{B,L1}_JUN{B,D}:-0.145659145122;DMAP1_NCOR{1,2}_SMARC:-0.149202066707;CDC5L:-0.152195280793;BREu{core}:-0.153759226574;ZNF148:-0.176883504825;RREB1:-0.193469981532;PPARG:-0.195564647674;MYBL2:-0.195698085156;MED-1{core}:-0.196211490916;NFATC1..3:-0.20077885698;HMX1:-0.201025749824;NFE2:-0.20489081933;FOXD3:-0.217705616109;HMGA1,2:-0.230538885955;PATZ1:-0.236868569772;ZIC1..3:-0.240662459209;GATA6:-0.261259303154;STAT5{A,B}:-0.271524832147;FOXP1:-0.29828038848;NFE2L2:-0.301335978124;NFKB1_REL_RELA:-0.306149394593;CDX1,2,4:-0.333010081352;PBX1:-0.334857966657;AR:-0.334910912905;IKZF2:-0.340981365948;NFIL3:-0.343525256278;OCT4_SOX2{dimer}:-0.344281759668;FOXL1:-0.357838222948;MYFfamily:-0.366529180174;ATF2:-0.406180776959;ATF6:-0.410043440242;YY1:-0.416171985042;GCM1,2:-0.432756122712;HOX{A4,D4}:-0.436232115075;FOX{I1,J2}:-0.437779951753;POU3F1..4:-0.446868502327;DBP:-0.446931769671;MEF2{A,B,C,D}:-0.454615811959;MYOD1:-0.458736485314;RUNX1..3:-0.468273044175;ZFP161:-0.469978828806;SPIB:-0.471152979239;RFX2..5_RFXANK_RFXAP:-0.491204839007;ELF1,2,4:-0.511726034909;FOX{F1,F2,J1}:-0.520691669612;RORA:-0.524865665699;NHLH1,2:-0.53639174351;PITX1..3:-0.53933975871;NANOG{mouse}:-0.539886767326;HBP1_HMGB_SSRP1_UBTF:-0.544975358007;MYB:-0.55057960158;ALX4:-0.550843535662;AHR_ARNT_ARNT2:-0.560726551018;CUX2:-0.564048257199;T:-0.572115590796;RXRA_VDR{dimer}:-0.58488262901;ETS1,2:-0.604496301086;RBPJ:-0.618352149182;SOX{8,9,10}:-0.634330272472;ALX1:-0.646285583651;TBX4,5:-0.657086678673;HAND1,2:-0.660145673271;SPI1:-0.663311014404;ZNF238:-0.667016614725;ATF5_CREB3:-0.671231922346;NKX2-3_NKX2-5:-0.672234778955;CRX:-0.677047447753;FOXN1:-0.685535082288;PAX2:-0.716612040848;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.732665754197;POU2F1..3:-0.738828685354;NANOG:-0.749339801726;SRF:-0.756551421936;TFAP4:-0.775657537487;NR1H4:-0.791587316904;FOXP3:-0.796607196217;XBP1:-0.812869933755;BPTF:-0.823982228714;HOX{A6,A7,B6,B7}:-0.83407877149;FOXO1,3,4:-0.859243649636;PAX3,7:-0.864678639507;VSX1,2:-0.90894413886;SOX5:-0.914499820377;NKX2-2,8:-0.927053356146;CREB1:-0.955556561189;NFIX:-1.00460983252;NKX2-1,4:-1.01355919338;FOXA2:-1.0274476094;HOXA9_MEIS1:-1.03184800167;NR5A1,2:-1.06007623152;POU6F1:-1.09104837311;JUN:-1.16006784916;TGIF1:-1.18971100605;PDX1:-1.57387268234
|top_motifs=bHLH_family:1.83514996867;HOX{A5,B5}:1.58362781535;GZF1:1.26147194293;TEAD1:1.20760922509;HSF1,2:1.16506423154;LMO2:1.12312772388;ZNF384:1.1217271027;AIRE:1.06091608843;XCPE1{core}:1.01592574859;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.954866789291;TEF:0.858554019136;TOPORS:0.772013373012;PAX6:0.755415254397;POU1F1:0.712330415982;EP300:0.693763402898;NR3C1:0.670748046672;ADNP_IRX_SIX_ZHX:0.662733083085;ELK1,4_GABP{A,B1}:0.657166097656;PAX4:0.644117106719;E2F1..5:0.643489038946;TFAP2B:0.559056593587;EVI1:0.554678789293;TP53:0.531574334237;NFE2L1:0.527238781737;TLX1..3_NFIC{dimer}:0.519419094362;ARID5B:0.4955181904;ZEB1:0.486437353429;EBF1:0.45376051929;FOXM1:0.451276948367;STAT2,4,6:0.439889563846;LHX3,4:0.415550088054;ZNF423:0.404250690154;UFEwm:0.379290320955;RXR{A,B,G}:0.367185509583;SPZ1:0.357158356381;SNAI1..3:0.322456282055;HLF:0.318108461859;PAX1,9:0.302651484347;ZNF143:0.298725074217;MAZ:0.265706158123;HNF4A_NR2F1,2:0.259916050374;GLI1..3:0.254690865869;STAT1,3:0.24021279424;EN1,2:0.23815572277;ZBTB16:0.23559580016;ESR1:0.234066209815;RFX1:0.224316560843;HIF1A:0.218849882034;PRRX1,2:0.205063523591;HIC1:0.199071555398;SOX17:0.190067749432;GFI1B:0.184895416586;MTE{core}:0.183037686787;LEF1_TCF7_TCF7L1,2:0.158969631244;TFDP1:0.158264314851;PAX5:0.155483547716;NR6A1:0.148306694766;GTF2A1,2:0.145989079072;SMAD1..7,9:0.133486109922;MTF1:0.124974712805;SP1:0.121645359418;NKX6-1,2:0.118407781465;GFI1:0.113464905306;NRF1:0.102253204471;SREBF1,2:0.0976915841994;SOX2:0.0906987714527;REST:0.0852615132364;IRF7:0.0844715448407;ESRRA:0.0778122628943;ATF4:0.0775266070125;NKX3-2:0.0732915143289;IKZF1:0.0686810089592;NFY{A,B,C}:0.0629437909324;KLF4:0.0602928479021;PRDM1:0.0585159424107;TFAP2{A,C}:0.0482926938342;TAL1_TCF{3,4,12}:0.0371234047645;ONECUT1,2:0.0358383266148;PAX8:0.0350408332996;ZBTB6:0.0342990465229;GATA4:0.0286400842479;NKX3-1:0.0110088049255;GTF2I:0.00860806276193;TFCP2:0.00386010659258;MZF1:-0.0171936724841;TBP:-0.0254436296187;EGR1..3:-0.0370709960564;POU5F1:-0.0423065548584;HNF1A:-0.0529462064882;BACH2:-0.0636547234248;MAFB:-0.0669302699319;HES1:-0.0701085659648;CEBPA,B_DDIT3:-0.0843121154837;TLX2:-0.0845762611806;FOSL2:-0.0963190892463;FOXQ1:-0.101653014062;FOX{D1,D2}:-0.117038767489;IRF1,2:-0.119449448371;FOS_FOS{B,L1}_JUN{B,D}:-0.145659145122;DMAP1_NCOR{1,2}_SMARC:-0.149202066707;CDC5L:-0.152195280793;BREu{core}:-0.153759226574;ZNF148:-0.176883504825;RREB1:-0.193469981532;PPARG:-0.195564647674;MYBL2:-0.195698085156;MED-1{core}:-0.196211490916;NFATC1..3:-0.20077885698;HMX1:-0.201025749824;NFE2:-0.20489081933;FOXD3:-0.217705616109;HMGA1,2:-0.230538885955;PATZ1:-0.236868569772;ZIC1..3:-0.240662459209;GATA6:-0.261259303154;STAT5{A,B}:-0.271524832147;FOXP1:-0.29828038848;NFE2L2:-0.301335978124;NFKB1_REL_RELA:-0.306149394593;CDX1,2,4:-0.333010081352;PBX1:-0.334857966657;AR:-0.334910912905;IKZF2:-0.340981365948;NFIL3:-0.343525256278;OCT4_SOX2{dimer}:-0.344281759668;FOXL1:-0.357838222948;MYFfamily:-0.366529180174;ATF2:-0.406180776959;ATF6:-0.410043440242;YY1:-0.416171985042;GCM1,2:-0.432756122712;HOX{A4,D4}:-0.436232115075;FOX{I1,J2}:-0.437779951753;POU3F1..4:-0.446868502327;DBP:-0.446931769671;MEF2{A,B,C,D}:-0.454615811959;MYOD1:-0.458736485314;RUNX1..3:-0.468273044175;ZFP161:-0.469978828806;SPIB:-0.471152979239;RFX2..5_RFXANK_RFXAP:-0.491204839007;ELF1,2,4:-0.511726034909;FOX{F1,F2,J1}:-0.520691669612;RORA:-0.524865665699;NHLH1,2:-0.53639174351;PITX1..3:-0.53933975871;NANOG{mouse}:-0.539886767326;HBP1_HMGB_SSRP1_UBTF:-0.544975358007;MYB:-0.55057960158;ALX4:-0.550843535662;AHR_ARNT_ARNT2:-0.560726551018;CUX2:-0.564048257199;T:-0.572115590796;RXRA_VDR{dimer}:-0.58488262901;ETS1,2:-0.604496301086;RBPJ:-0.618352149182;SOX{8,9,10}:-0.634330272472;ALX1:-0.646285583651;TBX4,5:-0.657086678673;HAND1,2:-0.660145673271;SPI1:-0.663311014404;ZNF238:-0.667016614725;ATF5_CREB3:-0.671231922346;NKX2-3_NKX2-5:-0.672234778955;CRX:-0.677047447753;FOXN1:-0.685535082288;PAX2:-0.716612040848;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.732665754197;POU2F1..3:-0.738828685354;NANOG:-0.749339801726;SRF:-0.756551421936;TFAP4:-0.775657537487;NR1H4:-0.791587316904;FOXP3:-0.796607196217;XBP1:-0.812869933755;BPTF:-0.823982228714;HOX{A6,A7,B6,B7}:-0.83407877149;FOXO1,3,4:-0.859243649636;PAX3,7:-0.864678639507;VSX1,2:-0.90894413886;SOX5:-0.914499820377;NKX2-2,8:-0.927053356146;CREB1:-0.955556561189;NFIX:-1.00460983252;NKX2-1,4:-1.01355919338;FOXA2:-1.0274476094;HOXA9_MEIS1:-1.03184800167;NR5A1,2:-1.06007623152;POU6F1:-1.09104837311;JUN:-1.16006784916;TGIF1:-1.18971100605;PDX1:-1.57387268234
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10856-111G1;search_select_hide=table117:FF:10856-111G1
}}
}}

Latest revision as of 16:24, 3 June 2020

Name:mesothelioma cell line:Mero-95
Species:Human (Homo sapiens)
Library ID:CNhs13073
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
ageunknown
cell typemesothelial cell
cell lineMero-95
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005521
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13073 CAGE DRX007945 DRR008817
Accession ID Hg19

Library idBAMCTSS
CNhs13073 DRZ000242 DRZ001627
Accession ID Hg38

Library idBAMCTSS
CNhs13073 DRZ011592 DRZ012977
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.181
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.238
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.145
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0929
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0429
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0.0861
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.272
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.158
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0861
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.301
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.158
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0861
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.632
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.297
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.158
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0861
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.158
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13073

Jaspar motifP-value
MA0002.29.41269e-4
MA0003.10.943
MA0004.10.103
MA0006.10.228
MA0007.10.934
MA0009.10.543
MA0014.10.819
MA0017.10.524
MA0018.20.0596
MA0019.10.837
MA0024.10.0742
MA0025.10.579
MA0027.10.304
MA0028.10.0185
MA0029.10.557
MA0030.10.75
MA0031.10.213
MA0035.20.0708
MA0038.10.676
MA0039.20.382
MA0040.10.944
MA0041.10.889
MA0042.10.881
MA0043.10.63
MA0046.10.249
MA0047.20.0248
MA0048.10.0962
MA0050.10.969
MA0051.10.553
MA0052.10.00714
MA0055.10.0345
MA0057.10.0773
MA0058.10.0273
MA0059.10.0424
MA0060.10.974
MA0061.14.51664e-4
MA0062.20.214
MA0065.20.868
MA0066.10.386
MA0067.10.00942
MA0068.10.236
MA0069.10.601
MA0070.10.76
MA0071.10.77
MA0072.10.532
MA0073.10.949
MA0074.10.972
MA0076.10.049
MA0077.10.407
MA0078.10.514
MA0079.20.244
MA0080.22.50458e-13
MA0081.10.062
MA0083.10.00312
MA0084.10.05
MA0087.10.534
MA0088.10.355
MA0090.11.72715e-7
MA0091.10.142
MA0092.10.74
MA0093.10.0641
MA0099.20.203
MA0100.10.294
MA0101.10.0242
MA0102.20.552
MA0103.10.0416
MA0104.20.605
MA0105.16.82976e-7
MA0106.10.231
MA0107.10.0139
MA0108.20.683
MA0111.10.853
MA0112.20.496
MA0113.10.837
MA0114.10.976
MA0115.10.806
MA0116.12.67376e-4
MA0117.10.669
MA0119.10.679
MA0122.10.159
MA0124.10.0921
MA0125.10.632
MA0131.10.877
MA0135.10.632
MA0136.14.05744e-10
MA0137.20.123
MA0138.20.065
MA0139.10.227
MA0140.10.874
MA0141.10.325
MA0142.10.0627
MA0143.10.89
MA0144.10.985
MA0145.10.46
MA0146.10.0603
MA0147.10.448
MA0148.10.247
MA0149.10.847
MA0150.10.0694
MA0152.10.987
MA0153.10.265
MA0154.10.00188
MA0155.10.519
MA0156.10.00669
MA0157.10.263
MA0159.10.853
MA0160.10.216
MA0162.10.699
MA0163.12.14382e-4
MA0164.10.219
MA0258.10.413
MA0259.10.841



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13073

Novel motifP-value
10.191
100.0905
1000.136
1010.448
1020.443
1030.575
1040.754
1050.273
1060.115
1070.97
1080.336
1090.82
110.276
1100.685
1110.0213
1120.118
1130.0148
1140.476
1150.507
1160.787
1170.33
1180.882
1190.526
120.144
1200.923
1210.321
1220.537
1230.0806
1240.131
1250.322
1260.248
1270.664
1280.023
1290.608
130.649
1300.903
1310.576
1320.566
1330.438
1340.0677
1350.0115
1360.161
1370.127
1380.67
1390.00467
140.552
1400.845
1410.13
1420.973
1430.0537
1440.936
1450.00869
1460.653
1470.618
1480.422
1490.816
150.409
1500.267
1510.909
1520.024
1530.368
1540.988
1550.311
1560.187
1570.7
1580.0274
1590.193
160.778
1600.63
1610.887
1620.465
1630.141
1640.0627
1650.23
1660.572
1670.472
1680.0891
1690.451
170.507
180.297
190.163
20.801
200.804
210.688
220.979
230.163
240.68
250.567
260.379
270.886
280.784
290.256
30.197
300.657
310.85
320.337
330.967
340.769
350.0826
360.312
370.574
380.689
390.695
40.25
400.485
418.41784e-4
420.402
430.0296
440.979
450.557
460.252
470.868
481
490.011
50.0574
500.764
510.904
520.839
530.531
540.969
550.321
560.978
570.868
580.109
590.677
60.412
600.173
610.867
620.0482
630.525
640.385
650.232
660.639
670.167
680.947
690.686
70.387
700.101
710.862
720.387
730.202
740.692
750.419
760.487
770.636
780.238
790.574
80.81
800.0271
810.264
820.458
830.999
840.261
850.0439
860.0747
870.0811
880.26
890.996
90.136
900.0113
910.114
920.0376
930.897
940.304
950.414
960.0351
970.73
980.226
990.0083



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13073


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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