FF:10855-111F9: Difference between revisions

Latest revision as of 15:10, 3 June 2020

Name:	mesothelioma cell line:Mero-84
Species:	Human (Homo sapiens)
Library ID:	CNhs13072
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	male
age	unknown
cell type	mesothelial cell
cell line	Mero-84
company	ECACC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005214

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13072		CAGE		DRX007944		DRR008816

Accession ID Hg19

Library id		BAM		CTSS
CNhs13072		DRZ000241		DRZ001626

Accession ID Hg38

Library id		BAM		CTSS
CNhs13072		DRZ011591		DRZ012976

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.00501
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.247
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0163
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.297
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.224
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.326
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.349
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.331
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.209
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.117
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.313
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.117
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.398
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.169
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.406
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.117
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.117
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13072

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.597
MA0003.1	MA0003.1	0.26
MA0004.1	MA0004.1	0.324
MA0006.1	MA0006.1	0.044
MA0007.1	MA0007.1	0.864
MA0009.1	MA0009.1	0.328
MA0014.1	MA0014.1	0.84
MA0017.1	MA0017.1	0.598
MA0018.2	MA0018.2	0.00314
MA0019.1	MA0019.1	0.84
MA0024.1	MA0024.1	0.396
MA0025.1	MA0025.1	0.00175
MA0027.1	MA0027.1	1
MA0028.1	MA0028.1	0.541
MA0029.1	MA0029.1	0.782
MA0030.1	MA0030.1	0.359
MA0031.1	MA0031.1	0.00101
MA0035.2	MA0035.2	0.0118
MA0038.1	MA0038.1	0.897
MA0039.2	MA0039.2	0.292
MA0040.1	MA0040.1	0.174
MA0041.1	MA0041.1	0.945
MA0042.1	MA0042.1	0.667
MA0043.1	MA0043.1	1.4671e-5
MA0046.1	MA0046.1	0.647
MA0047.2	MA0047.2	0.11
MA0048.1	MA0048.1	0.317
MA0050.1	MA0050.1	3.24402e-6
MA0051.1	MA0051.1	0.0157
MA0052.1	MA0052.1	0.745
MA0055.1	MA0055.1	0.183
MA0057.1	MA0057.1	0.0901
MA0058.1	MA0058.1	0.103
MA0059.1	MA0059.1	0.759
MA0060.1	MA0060.1	0.453
MA0061.1	MA0061.1	0.778
MA0062.2	MA0062.2	0.0335
MA0065.2	MA0065.2	0.0499
MA0066.1	MA0066.1	0.146
MA0067.1	MA0067.1	5.25629e-4
MA0068.1	MA0068.1	0.319
MA0069.1	MA0069.1	0.887
MA0070.1	MA0070.1	0.836
MA0071.1	MA0071.1	0.251
MA0072.1	MA0072.1	0.935
MA0073.1	MA0073.1	0.926
MA0074.1	MA0074.1	0.549
MA0076.1	MA0076.1	0.0851
MA0077.1	MA0077.1	0.946
MA0078.1	MA0078.1	0.162
MA0079.2	MA0079.2	0.523
MA0080.2	MA0080.2	1.15441e-8
MA0081.1	MA0081.1	0.00279
MA0083.1	MA0083.1	0.932
MA0084.1	MA0084.1	0.019
MA0087.1	MA0087.1	0.652
MA0088.1	MA0088.1	0.208
MA0090.1	MA0090.1	1.38225e-5
MA0091.1	MA0091.1	0.722
MA0092.1	MA0092.1	0.251
MA0093.1	MA0093.1	0.312
MA0099.2	MA0099.2	0.0173
MA0100.1	MA0100.1	0.0674
MA0101.1	MA0101.1	0.223
MA0102.2	MA0102.2	0.923
MA0103.1	MA0103.1	3.98056e-4
MA0104.2	MA0104.2	0.416
MA0105.1	MA0105.1	0.377
MA0106.1	MA0106.1	0.24
MA0107.1	MA0107.1	0.138
MA0108.2	MA0108.2	0.00181
MA0111.1	MA0111.1	0.49
MA0112.2	MA0112.2	0.00462
MA0113.1	MA0113.1	0.584
MA0114.1	MA0114.1	0.31
MA0115.1	MA0115.1	0.77
MA0116.1	MA0116.1	0.0592
MA0117.1	MA0117.1	0.436
MA0119.1	MA0119.1	0.21
MA0122.1	MA0122.1	0.496
MA0124.1	MA0124.1	0.207
MA0125.1	MA0125.1	0.524
MA0131.1	MA0131.1	0.283
MA0135.1	MA0135.1	0.828
MA0136.1	MA0136.1	1.91906e-7
MA0137.2	MA0137.2	0.52
MA0138.2	MA0138.2	0.749
MA0139.1	MA0139.1	0.147
MA0140.1	MA0140.1	0.109
MA0141.1	MA0141.1	0.0437
MA0142.1	MA0142.1	0.777
MA0143.1	MA0143.1	0.7
MA0144.1	MA0144.1	0.823
MA0145.1	MA0145.1	0.0195
MA0146.1	MA0146.1	0.169
MA0147.1	MA0147.1	0.699
MA0148.1	MA0148.1	0.349
MA0149.1	MA0149.1	0.223
MA0150.1	MA0150.1	0.471
MA0152.1	MA0152.1	0.373
MA0153.1	MA0153.1	0.406
MA0154.1	MA0154.1	0.0907
MA0155.1	MA0155.1	0.144
MA0156.1	MA0156.1	2.96698e-4
MA0157.1	MA0157.1	0.0132
MA0159.1	MA0159.1	0.117
MA0160.1	MA0160.1	0.287
MA0162.1	MA0162.1	0.079
MA0163.1	MA0163.1	0.384
MA0164.1	MA0164.1	0.495
MA0258.1	MA0258.1	0.0467
MA0259.1	MA0259.1	0.359

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13072

Novel motif	Logo	P-value
1	1	0.333
10	10	0.16
100	100	0.225
101	101	0.172
102	102	0.274
103	103	0.286
104	104	0.712
105	105	0.915
106	106	0.179
107	107	0.0547
108	108	0.773
109	109	0.0539
11	11	0.262
110	110	0.0336
111	111	0.961
112	112	0.496
113	113	0.397
114	114	0.764
115	115	0.192
116	116	0.0557
117	117	0.147
118	118	0.724
119	119	0.176
12	12	0.828
120	120	0.11
121	121	0.858
122	122	0.607
123	123	0.731
124	124	0.97
125	125	0.0318
126	126	0.635
127	127	0.274
128	128	0.333
129	129	0.298
13	13	0.138
130	130	0.226
131	131	0.951
132	132	0.31
133	133	0.155
134	134	0.768
135	135	0.674
136	136	0.469
137	137	0.059
138	138	0.471
139	139	0.323
14	14	0.914
140	140	0.66
141	141	0.164
142	142	0.694
143	143	0.482
144	144	0.438
145	145	0.512
146	146	0.155
147	147	0.0606
148	148	0.406
149	149	0.0588
15	15	0.344
150	150	0.255
151	151	0.338
152	152	0.0253
153	153	0.988
154	154	0.764
155	155	0.833
156	156	0.197
157	157	0.455
158	158	0.0228
159	159	0.366
16	16	0.0813
160	160	0.0172
161	161	0.0266
162	162	0.0181
163	163	0.919
164	164	0.484
165	165	0.976
166	166	0.213
167	167	0.196
168	168	0.466
169	169	0.0429
17	17	0.44
18	18	0.407
19	19	0.434
2	2	0.197
20	20	0.251
21	21	0.349
22	22	0.257
23	23	0.289
24	24	0.49
25	25	0.975
26	26	0.748
27	27	0.233
28	28	0.895
29	29	0.633
3	3	0.593
30	30	0.235
31	31	0.678
32	32	0.193
33	33	0.557
34	34	0.485
35	35	0.788
36	36	0.81
37	37	0.371
38	38	0.564
39	39	0.322
4	4	0.922
40	40	0.0154
41	41	0.0341
42	42	0.28
43	43	0.833
44	44	0.238
45	45	0.235
46	46	0.301
47	47	0.308
48	48	0.15
49	49	0.732
5	5	0.886
50	50	0.985
51	51	0.351
52	52	0.464
53	53	0.77
54	54	0.253
55	55	0.141
56	56	0.103
57	57	0.114
58	58	0.747
59	59	0.0884
6	6	0.745
60	60	0.558
61	61	0.896
62	62	0.684
63	63	0.221
64	64	0.127
65	65	0.513
66	66	0.273
67	67	0.187
68	68	0.125
69	69	0.0117
7	7	0.347
70	70	0.405
71	71	0.297
72	72	0.679
73	73	0.121
74	74	0.967
75	75	0.988
76	76	0.26
77	77	0.00253
78	78	0.0477
79	79	0.627
8	8	0.0529
80	80	0.645
81	81	0.0347
82	82	0.0977
83	83	0.372
84	84	0.64
85	85	0.389
86	86	0.947
87	87	0.0351
88	88	0.725
89	89	0.0285
9	9	0.676
90	90	0.109
91	91	0.625
92	92	0.361
93	93	0.65
94	94	0.239
95	95	0.254
96	96	0.625
97	97	0.857
98	98	0.635
99	99	0.00829

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13072

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005214
+|accession_numbers=CAGE;DRX007944;DRR008816;DRZ000241;DRZ001626;DRZ011591;DRZ012976
 |ancestors_in_anatomy_facet=
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000222,CL:0000077
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!1.88!74.11!FOXS1;;chr11:61520075..61520136,+!p1@C11orf9!1.83!138.03!C11orf9;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.79!60.22!SEBOX;;chr2:16080659..16080685,+!p1@MYCN!1.61!39.84!MYCN;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.56!35.51!SEBOX;;chr6:10415276..10415341,-!p2@TFAP2A!1.53!39.84!TFAP2A;;chr17:7493405..7493419,-!p1@SOX15!1.53!33.04!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.41!TFAP2A;;chr3:111314186..111314204,-!p1@ZBED2!1.49!29.64!ZBED2;;chr20:55204351..55204377,+!p1@TFAP2C!1.33!25.63!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!1.26!25.94!PITX1;;chr22:19748231..19748317,+!p1@TBX1!1.25!16.68!TBX1;;chr2:46524897..46524911,+!p2@EPAS1!1.18!38.91!EPAS1;;chr20:62680984..62680999,-!p1@SOX18!1.17!18.22!SOX18;;chr9:132427883..132427951,+!p2@PRRX2!1.16!13.59!PRRX2;;chr2:172949484..172949522,+!p1@DLX1!1.15!12.97!DLX1;;chr21:38071430..38071456,+!p1@SIM2!1.15!12.97!SIM2;;chr4:4861385..4861398,+!p1@MSX1!1.14!37.98!MSX1;;chr5:2751762..2751784,-!p1@IRX2!1.14!12.66!IRX2;;chr2:239756671..239756732,+!p1@TWIST2!1.11!38.60!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.08!14.51!PRRX2;;chr9:16728047..16728061,-!p8@BNC2!1.08!11.12!BNC2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.07!10.81!SEBOX;;chr1:164528911..164528940,+!p7@PBX1!1.06!15.75!PBX1;;chr20:55205825..55205847,+!p2@TFAP2C!1.04!9.88!TFAP2C;;chr6:19837592..19837621,+!p1@ID4!1.03!60.22!ID4;;chr15:37392094..37392116,-!p6@MEIS2!1.02!11.73!MEIS2;;chr2:121493425..121493474,+!p1@GLI2!1.01!20.69!GLI2;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.26!HOXD8;;chr3:128206762..128206781,-!p2@GATA2!1.00!57.75!GATA2;;chr6:1389789..1389821,+!p1@FOXF2!1.00!12.35!FOXF2;;chr16:1429627..1429662,-!p2@UNKL!0.99!26.25!UNKL;;chr2:239756739..239756755,+!p2@TWIST2!0.98!14.82!TWIST2;;chr15:37391588..37391604,-!p11@MEIS2!0.98!11.12!MEIS2;;chr15:67430351..67430366,+!p10@SMAD3!0.98!8.65!SMAD3;;chr17:46682321..46682362,-!p1@HOXB6!0.97!8.34!HOXB6;;chr7:96654133..96654150,-!p1@DLX5!0.97!8.34!DLX5;;chr16:86544113..86544145,+!p1@FOXF1!0.96!10.19!FOXF1;;chr5:153857778..153857794,-!p1@HAND1!0.96!8.03!HAND1;;chr9:16728161..16728185,-!p4@BNC2!0.96!8.03!BNC2;;chr17:46687959..46688007,-!p2@HOXB7!0.95!11.12!HOXB7;;chr19:45260775..45260838,+!p5@BCL3!0.94!10.19!BCL3;;chr6:10412392..10412409,-!p4@TFAP2A!0.94!8.96!TFAP2A;;chr18:19749541..19749557,+!p1@GATA6!0.92!23.78!GATA6;;chr22:19746969..19746987,+!p2@TBX1!0.92!7.41!TBX1;;chr3:170076314..170076334,+!p2@SKIL!0.91!9.57!SKIL;;chr10:48355030..48355090,+!p1@ZNF488!0.91!9.26!ZNF488;;chr15:83953397..83953425,-!p1@BNC1!0.91!8.34!BNC1;;chr2:191906489..191906517,-!p6@STAT4!0.91!7.10!STAT4;;chr20:55205791..55205817,+!p3@TFAP2C!0.91!7.10!TFAP2C;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.10!KDM5D;;chr20:30193083..30193098,+!p1@ID1!0.90!583.94!ID1;;chr20:42295745..42295765,+!p1@MYBL2!0.90!119.81!MYBL2;;chr7:149470540..149470596,-!p2@ZNF467!0.89!8.96!ZNF467;;chr3:138665937..138665968,-!p1@FOXL2!0.89!6.79!FOXL2;;chr1:164528942..164528964,+!p11@PBX1!0.89!6.79!PBX1;;chr1:164529004..164529015,+!p15@PBX1!0.89!6.79!PBX1;;chr2:172967621..172967637,-!p1@DLX2!0.88!18.53!DLX2;;chr12:48298765..48298783,-!p2@VDR!0.88!14.20!VDR;;chr7:149470641..149470694,-!p1@ZNF467!0.87!30.26!ZNF467;;chr15:67458861..67458879,+!p17@SMAD3!0.87!6.48!SMAD3;;chrX:24169518..24169522,+!p8@ZFX!0.87!6.48!ZFX;;chr2:45236540..45236577,-!p1@SIX2!0.87!6.48!SIX2;;chr8:37963466..37963506,+!p3@ASH2L!0.86!8.03!ASH2L;;chr15:67458836..67458859,+!p22@SMAD3!0.86!6.18!SMAD3;;chr1:164528410..164528428,+!p1@PBX1!0.85!48.17!PBX1;;chr5:174151553..174151610,+!p1@MSX2!0.85!10.50!MSX2;;chr20:50721803..50721857,-!p2@ZFP64!0.85!9.88!ZFP64;;chr12:124873357..124873401,-!p1@NCOR2!0.84!72.57!NCOR2;;chr12:57853634..57853662,+!p2@GLI1!0.84!5.87!GLI1;;chr7:101917447..101917479,+!p4@CUX1!0.84!5.87!CUX1;;chr16:85932760..85932775,+!p1@IRF8!0.84!5.87!IRF8;;chr16:29818199..29818216,+!p11@MAZ!0.83!9.88!MAZ;;chr6:85473156..85473210,-!p2@TBX18!0.83!7.10!TBX18;;chr15:37390374..37390422,-!p9@MEIS2!0.82!7.10!MEIS2;;chr1:164528975..164528998,+!p13@PBX1!0.82!5.56!PBX1;;chr15:66994561..66994597,+!p2@SMAD6!0.81!13.90!SMAD6;;chr2:46524878..46524891,+!p3@EPAS1!0.81!9.88!EPAS1;;chr15:37392534..37392562,-!p10@MEIS2!0.80!5.87!MEIS2;;chr3:111314230..111314241,-!p2@ZBED2!0.80!5.25!ZBED2;;chr1:23885981..23886002,-!p1@ID3!0.79!987.24!ID3;;chr12:80084737..80084763,-!p3@PAWR!0.79!21.00!PAWR;;chr12:54785074..54785122,-!p2@ZNF385A!0.79!8.34!ZNF385A;;chr12:3068544..3068597,+!p1@TEAD4!0.78!33.04!TEAD4;;chr8:73921136..73921151,+!p2@TERF1!0.77!7.72!TERF1;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr2:16081912..16081931,+!p2@MYCN!0.77!4.94!MYCN;;chr3:138665969..138665993,-!p2@FOXL2!0.77!4.94!FOXL2;;chr8:106330656..106330684,+!p1@ZFPM2!0.76!13.28!ZFPM2;;chr12:80084167..80084197,-!p5@PAWR!0.76!12.04!PAWR;;chr14:21566731..21566836,-!p1@ZNF219!0.75!55.28!ZNF219;;chr9:137217986..137218049,+!p3@RXRA!0.75!14.51!RXRA;;chr15:67418119..67418162,+!p5@SMAD3!0.75!5.25!SMAD3;;chr15:67418177..67418204,+!p9@SMAD3!0.75!4.63!SMAD3;;chr9:126774018..126774055,+!p1@LHX2!0.75!4.63!LHX2;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.63!DLX5;;chr8:11561684..11561751,+!p1@GATA4!0.75!4.63!GATA4;;chr1:151032860..151032918,+!p1@MLLT11!0.74!59.91!MLLT11;;chr12:54772960..54773015,-!p3@ZNF385A!0.73!23.78!ZNF385A;;chr2:121493492..121493537,+!p2@GLI2!0.73!7.72!GLI2;;chr12:54393880..54393962,+!p1@HOXC9!0.73!4.32!HOXC9;;chr1:164600184..164600191,+!p38@PBX1!0.73!4.32!PBX1;;chr9:16728327..16728338,-!p5@BNC2!0.73!4.32!BNC2;;chr19:16435625..16435682,+!p1@KLF2!0.71!152.55!KLF2;;chr15:66994663..66994680,+!p1@SMAD6!0.71!10.81!SMAD6;;chr12:80084137..80084165,-!p10@PAWR!0.71!5.56!PAWR;;chr2:71127699..71127744,+!p1@VAX2!0.70!8.96!VAX2;;chr1:164528687..164528711,+!p6@PBX1!0.69!4.63!PBX1;;chr15:37390850..37390909,-!p3@MEIS2!0.68!8.03!MEIS2;;chr15:67418047..67418093,+!p4@SMAD3!0.68!4.94!SMAD3;;chr1:204042233..204042249,+!p1@SOX13!0.67!26.56!SOX13;;chr1:164528445..164528459,+!p2@PBX1!0.67!12.97!PBX1;;chr7:42276787..42276815,-!p1@GLI3!0.67!10.81!GLI3;;chrX:129244655..129244697,-!p4@ELF4!0.67!7.10!ELF4;;chr5:2751785..2751808,-!p2@IRX2!0.67!3.71!IRX2;;chr8:55370487..55370503,+!p1@SOX17!0.67!3.71!SOX17;;chr3:193853927..193853944,+!p1@HES1!0.65!131.55!HES1;;chr12:48298785..48298828,-!p1@VDR!0.65!21.00!VDR;;chr20:31350184..31350200,+!p1@DNMT3B!0.65!8.03!DNMT3B;;chr18:19749386..19749404,+!p2@GATA6!0.65!5.25!GATA6;;chr12:54785054..54785072,-!p4@ZNF385A!0.65!4.01!ZNF385A;;chr15:67357924..67357952,+!p2@SMAD3!0.64!25.94!SMAD3;;chr12:124873852..124873881,-!p3@NCOR2!0.64!23.78!NCOR2;;chr12:54447599..54447630,+!p3@HOXC4!0.64!4.32!HOXC4;;chr12:54332608..54332636,+!p1@HOXC13!0.64!3.40!HOXC13;;chr2:16082155..16082169,+!p3@MYCN!0.64!3.40!MYCN;;chr2:42721205..42721307,+!p4@MTA3!0.64!3.40!MTA3;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.40!SOX11;;chr9:129376201..129376225,+!p1@LMX1B!0.64!3.40!LMX1B;;chr1:6479968..6479986,-!p1@HES2!0.64!3.40!HES2;;chr21:38071403..38071428,+!p2@SIM2!0.64!3.40!SIM2;;chr5:174151612..174151633,+!p2@MSX2!0.64!3.40!MSX2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.63!38.60!GLIS2;;chr1:164528616..164528660,+!p5@PBX1!0.63!7.41!PBX1;;chr12:80084279..80084293,-!p8@PAWR!0.63!5.87!PAWR;;chr12:48744642..48744733,-!p1@ZNF641!0.62!25.01!ZNF641;;chr12:7079780..7079791,-!p2@PHB2!0.61!19.15!PHB2;;chr12:54394309..54394336,+!p2@HOXC9!0.61!3.09!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!0.61!3.09!HOXC8;;chr1:2985760..2985774,+!p1@PRDM16!0.61!3.09!PRDM16;;chr2:172950227..172950249,+!p2@DLX1!0.61!3.09!DLX1;;chr3:128207349..128207386,-!p3@GATA2!0.61!3.09!GATA2;;chr5:3595977..3595999,+!p1@IRX1!0.61!3.09!IRX1;;chr7:35293685..35293718,-!p1@TBX20!0.61!3.09!TBX20;;chr14:95236440..95236465,-!p1@GSC!0.61!3.09!GSC;;chr10:77161504..77161530,-!p1@ZNF503!0.60!47.86!ZNF503;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.60!33.97!ZNF595;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.63!HOXB7;;chr8:106330696..106330719,+!p2@ZFPM2!0.60!4.01!ZFPM2;;chr2:85360499..85360598,+!p1@TCF7L1!0.59!19.45!TCF7L1;;chr15:37392724..37392757,-!p1@MEIS2!0.59!15.75!MEIS2;;chr7:128577972..128578047,+!p1@IRF5!0.59!4.94!IRF5;;chr10:8096631..8096660,+!p1@GATA3!0.59!3.71!GATA3;;chr5:176738887..176738934,-!p1@MXD3!0.58!22.54!MXD3;;chr5:122424918..122424944,+!p1@PRDM6!0.58!2.78!PRDM6;;chr5:3595934..3595957,+!p2@IRX1!0.58!2.78!IRX1;;chr7:101460882..101460923,+!p5@CUX1!0.58!2.78!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.58!2.78!CUX1;;chr10:119303078..119303169,+!p2@EMX2!0.58!2.78!EMX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.58!2.78!HOXC5;;chr18:45663490..45663528,-!p2@ZBTB7C!0.58!2.78!ZBTB7C;;chr1:164528866..164528877,+!p12@PBX1!0.58!2.78!PBX1;;chr20:61051039..61051057,-!p1@GATA5!0.58!2.78!GATA5;;chr2:100721881..100721904,-!p6@AFF3!0.58!2.78!AFF3;;chr2:16080635..16080650,+!p4@MYCN!0.58!2.78!MYCN;;chr12:80084303..80084332,-!p1@PAWR!0.57!19.76!PAWR;;chr20:42295713..42295738,+!p2@MYBL2!0.57!19.45!MYBL2;;chr16:1429674..1429703,-!p3@UNKL!0.57!4.94!UNKL;;chr12:3069037..3069119,+!p2@TEAD4!0.56!10.81!TEAD4;;chr10:77161133..77161176,-!p3@ZNF503!0.56!6.48!ZNF503;;chr11:12696071..12696086,+!p3@TEAD1!0.56!3.71!TEAD1;;chr12:2986206..2986258,-!p2@FOXM1!0.55!19.15!FOXM1;;chr20:42543506..42543549,+!p2@TOX2!0.55!7.10!TOX2;;chr8:37963407..37963454,+!p2@ASH2L!0.54!8.96!ASH2L;;chr6:1389989..1390019,+!p2@FOXF2!0.54!2.47!FOXF2;;chr7:101917407..101917443,+!p3@CUX1!0.54!2.47!CUX1;;chr1:2985726..2985752,+!p2@PRDM16!0.54!2.47!PRDM16;;chr20:30433431..30433442,-!p2@FOXS1!0.54!2.47!FOXS1;;chr12:54447637..54447659,+!p4@HOXC4!0.54!2.47!HOXC4;;chr14:38064429..38064486,-!p1@FOXA1!0.54!2.47!FOXA1;;chr2:172967242..172967265,-!p2@DLX2!0.54!2.47!DLX2;;chr4:299227..299272,-!p1@ZNF732!0.54!2.47!ZNF732;;chr15:67430381..67430396,+!p21@SMAD3!0.54!2.47!SMAD3;;chr17:48045917..48045977,+!p1@DLX4!0.54!2.47!DLX4;;chr9:16727978..16728010,-!p6@BNC2!0.54!2.47!BNC2;;chr15:67358163..67358192,+!p1@SMAD3!0.53!72.26!SMAD3;;chr19:11071546..11071624,+!p2@SMARCA4!0.53!16.37!SMARCA4;;chr17:38498594..38498661,+!p2@RARA!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+|ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=FF:0102424
 |fonse_cell_line_closure=FF:0102424
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
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 |name=mesothelioma cell line:Mero-84
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
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@@ Line 59: / Line 78: @@
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 |sample_cell_line=Mero-84
@@ Line 80: / Line 100: @@
 |top_motifs=HOXA9_MEIS1:1.63242599923;NKX3-1:1.47227217076;TEAD1:1.16531608044;ZIC1..3:1.16400689966;NKX3-2:1.02217503507;GLI1..3:0.988277017834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.978645953728;EP300:0.964770130817;HAND1,2:0.958631798094;STAT5{A,B}:0.940950100398;TBP:0.814708819419;TOPORS:0.80417157904;GCM1,2:0.763022889706;TEF:0.748299508797;PPARG:0.745234429867;IKZF1:0.742691606503;LMO2:0.717864968916;ZEB1:0.706605599182;NR6A1:0.701377088672;TFCP2:0.697049060763;E2F1..5:0.6917397809;PAX4:0.689480595169;TP53:0.681531272297;EBF1:0.672546179238;XCPE1{core}:0.649138946284;STAT2,4,6:0.635720846352;ADNP_IRX_SIX_ZHX:0.627874656277;HOX{A5,B5}:0.5920929859;HES1:0.565756603928;MYOD1:0.540045650163;ZNF148:0.505717902141;PAX5:0.474051123456;GFI1B:0.468751963583;T:0.465541709913;TAL1_TCF{3,4,12}:0.463305552512;LEF1_TCF7_TCF7L1,2:0.446546744478;ESRRA:0.441342061113;SNAI1..3:0.402683365134;GFI1:0.401524769545;UFEwm:0.380289161721;RXRA_VDR{dimer}:0.378793925301;ZNF384:0.370692070146;HOX{A6,A7,B6,B7}:0.362855486998;NFE2:0.346245746688;REST:0.342315320176;POU2F1..3:0.331162153339;ZBTB6:0.3051563896;LHX3,4:0.291086946049;RXR{A,B,G}:0.285549725976;TFAP2B:0.271770632993;NFE2L1:0.256742582991;SMAD1..7,9:0.250217301052;MAZ:0.249544331613;CDC5L:0.246570983498;FOXL1:0.231105457021;FOX{I1,J2}:0.22919878205;TLX1..3_NFIC{dimer}:0.199345094852;bHLH_family:0.199229617595;NANOG:0.194819589295;GTF2I:0.190661133857;EVI1:0.183595204633;POU6F1:0.172197756022;NR3C1:0.153808598717;MTE{core}:0.13609992366;ZNF238:0.128014475339;RREB1:0.110717993731;ZNF423:0.110132496756;ALX1:0.108490681532;NFE2L2:0.108326743118;KLF4:0.0865077915575;ALX4:0.0806913539188;CEBPA,B_DDIT3:0.0798182446184;MYBL2:0.0797765345279;POU5F1:0.0767406378893;TFAP4:0.0578327713658;NR5A1,2:0.0458262955099;TFAP2{A,C}:0.0428187564052;FOS_FOS{B,L1}_JUN{B,D}:0.0398267766861;HSF1,2:0.0343648664445;FOXQ1:0.0166476671006;TBX4,5:0.00471814612915;HIC1:-0.00333164196446;POU1F1:-0.00753565095477;BACH2:-0.010253626584;HNF1A:-0.0151852184795;RORA:-0.019204193468;HLF:-0.0302930038873;ELK1,4_GABP{A,B1}:-0.0325863014683;FOXM1:-0.0494996999308;SP1:-0.062908135558;MAFB:-0.0632879020316;PAX8:-0.0641724564315;CRX:-0.0695056719373;ARID5B:-0.0851609421892;GATA4:-0.0937598380689;MZF1:-0.116672048961;JUN:-0.123167227205;HNF4A_NR2F1,2:-0.136245617807;SRF:-0.139736911481;AIRE:-0.150211516712;MED-1{core}:-0.15656161521;PITX1..3:-0.156725818066;PRRX1,2:-0.162512663742;EGR1..3:-0.181078971796;SOX5:-0.181484765725;SPZ1:-0.187509319079;NKX2-3_NKX2-5:-0.201482458236;GTF2A1,2:-0.203553739438;NFY{A,B,C}:-0.205019528698;VSX1,2:-0.211735846958;ONECUT1,2:-0.214056672093;TLX2:-0.21532717069;MEF2{A,B,C,D}:-0.217113406042;CDX1,2,4:-0.223365456465;TFDP1:-0.229581871499;FOSL2:-0.231647159932;SOX{8,9,10}:-0.232400079758;PAX1,9:-0.247342535173;NKX6-1,2:-0.25101491047;RBPJ:-0.254472900275;GATA6:-0.26052852429;GZF1:-0.267700598245;POU3F1..4:-0.273246875786;MTF1:-0.282559713158;RFX1:-0.309168162021;EN1,2:-0.317939190323;FOXP3:-0.337423327738;NFKB1_REL_RELA:-0.351675411191;HMX1:-0.355527989759;PATZ1:-0.364276948975;STAT1,3:-0.377300468335;SOX2:-0.381349705069;MYB:-0.388788436257;PAX6:-0.39278144428;NRF1:-0.393016963783;HMGA1,2:-0.399437234087;ZNF143:-0.407585193617;NR1H4:-0.41299000471;OCT4_SOX2{dimer}:-0.416034066575;SPIB:-0.422363308189;ESR1:-0.443883278214;PRDM1:-0.461074495327;MYFfamily:-0.465563826728;FOXD3:-0.467541586372;ZBTB16:-0.468656252688;AR:-0.474229355857;HOX{A4,D4}:-0.480092032913;PBX1:-0.493102894436;FOX{F1,F2,J1}:-0.506485478549;RFX2..5_RFXANK_RFXAP:-0.535722305696;ETS1,2:-0.547621768289;YY1:-0.564730075454;IRF7:-0.60604583137;PAX3,7:-0.609625627401;NKX2-1,4:-0.619576339058;NKX2-2,8:-0.620054077444;NFATC1..3:-0.655454267032;NFIX:-0.655729018811;ELF1,2,4:-0.660681711813;PAX2:-0.678158736736;DBP:-0.681387506877;XBP1:-0.683622511794;RUNX1..3:-0.693634419768;ATF5_CREB3:-0.696057303346;IRF1,2:-0.714148575831;FOXP1:-0.717011347369;ATF4:-0.725378285983;SPI1:-0.740509505005;IKZF2:-0.763435283171;BREu{core}:-0.764213473642;NFIL3:-0.804200753454;FOXA2:-0.804257487996;DMAP1_NCOR{1,2}_SMARC:-0.858720520459;NHLH1,2:-0.952512651715;HBP1_HMGB_SSRP1_UBTF:-0.957002398572;ATF2:-0.976319238845;CUX2:-0.985449574573;FOXO1,3,4:-1.08020633018;FOXN1:-1.14166371326;TGIF1:-1.16462197061;NANOG{mouse}:-1.2029097156;FOX{D1,D2}:-1.20365546913;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20483952148;SREBF1,2:-1.2158075287;ATF6:-1.24242210416;SOX17:-1.25191250343;BPTF:-1.312948757;AHR_ARNT_ARNT2:-1.37277631505;CREB1:-1.57340005806;PDX1:-1.57975584446;HIF1A:-1.77082526294;ZFP161:-1.87598793966
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10855-111F9;search_select_hide=table117:FF:10855-111F9
 }}

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FF:10855-111F9: Difference between revisions

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Latest revision as of 15:10, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0