FF:10847-111F1: Difference between revisions

Latest revision as of 15:09, 3 June 2020

Name:	mesothelioma cell line:NCI-H2052
Species:	Human (Homo sapiens)
Library ID:	CNhs13063
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	male
age	65
cell type	mesothelial cell
cell line	NCI-H2052
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005518

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13063		CAGE		DRX007946		DRR008818

Accession ID Hg19

Library id		BAM		CTSS
CNhs13063		DRZ000243		DRZ001628

Accession ID Hg38

Library id		BAM		CTSS
CNhs13063		DRZ011593		DRZ012978

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.137
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.438
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.161
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0508
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0707
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.165
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.16
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.449
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00706
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.549
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.185
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0707
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.365
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0752
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13063

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.031
MA0003.1	MA0003.1	0.226
MA0004.1	MA0004.1	0.786
MA0006.1	MA0006.1	0.403
MA0007.1	MA0007.1	0.647
MA0009.1	MA0009.1	0.783
MA0014.1	MA0014.1	0.582
MA0017.1	MA0017.1	0.0905
MA0018.2	MA0018.2	0.0012
MA0019.1	MA0019.1	0.447
MA0024.1	MA0024.1	2.83484e-4
MA0025.1	MA0025.1	0.233
MA0027.1	MA0027.1	0.355
MA0028.1	MA0028.1	0.545
MA0029.1	MA0029.1	0.25
MA0030.1	MA0030.1	0.133
MA0031.1	MA0031.1	0.027
MA0035.2	MA0035.2	0.47
MA0038.1	MA0038.1	0.663
MA0039.2	MA0039.2	0.0913
MA0040.1	MA0040.1	0.894
MA0041.1	MA0041.1	0.676
MA0042.1	MA0042.1	0.693
MA0043.1	MA0043.1	0.0019
MA0046.1	MA0046.1	0.133
MA0047.2	MA0047.2	0.0631
MA0048.1	MA0048.1	0.0325
MA0050.1	MA0050.1	0.102
MA0051.1	MA0051.1	0.542
MA0052.1	MA0052.1	0.00978
MA0055.1	MA0055.1	0.0245
MA0057.1	MA0057.1	0.308
MA0058.1	MA0058.1	0.963
MA0059.1	MA0059.1	0.455
MA0060.1	MA0060.1	0.00215
MA0061.1	MA0061.1	0.00361
MA0062.2	MA0062.2	0.86
MA0065.2	MA0065.2	0.0333
MA0066.1	MA0066.1	0.271
MA0067.1	MA0067.1	0.00626
MA0068.1	MA0068.1	0.069
MA0069.1	MA0069.1	0.742
MA0070.1	MA0070.1	0.235
MA0071.1	MA0071.1	0.242
MA0072.1	MA0072.1	0.0203
MA0073.1	MA0073.1	0.934
MA0074.1	MA0074.1	0.927
MA0076.1	MA0076.1	0.833
MA0077.1	MA0077.1	0.605
MA0078.1	MA0078.1	0.14
MA0079.2	MA0079.2	0.89
MA0080.2	MA0080.2	8.76078e-8
MA0081.1	MA0081.1	0.0985
MA0083.1	MA0083.1	0.79
MA0084.1	MA0084.1	0.777
MA0087.1	MA0087.1	0.342
MA0088.1	MA0088.1	0.666
MA0090.1	MA0090.1	0.0014
MA0091.1	MA0091.1	0.0332
MA0092.1	MA0092.1	0.631
MA0093.1	MA0093.1	0.643
MA0099.2	MA0099.2	3.23308e-4
MA0100.1	MA0100.1	0.77
MA0101.1	MA0101.1	0.0596
MA0102.2	MA0102.2	0.407
MA0103.1	MA0103.1	0.138
MA0104.2	MA0104.2	0.572
MA0105.1	MA0105.1	8.25568e-5
MA0106.1	MA0106.1	8.68615e-4
MA0107.1	MA0107.1	0.00959
MA0108.2	MA0108.2	0.692
MA0111.1	MA0111.1	0.298
MA0112.2	MA0112.2	0.0152
MA0113.1	MA0113.1	0.0276
MA0114.1	MA0114.1	0.106
MA0115.1	MA0115.1	0.183
MA0116.1	MA0116.1	0.00163
MA0117.1	MA0117.1	0.585
MA0119.1	MA0119.1	0.553
MA0122.1	MA0122.1	0.463
MA0124.1	MA0124.1	0.0867
MA0125.1	MA0125.1	0.211
MA0131.1	MA0131.1	0.581
MA0135.1	MA0135.1	0.617
MA0136.1	MA0136.1	4.77326e-6
MA0137.2	MA0137.2	0.186
MA0138.2	MA0138.2	2.61872e-4
MA0139.1	MA0139.1	0.119
MA0140.1	MA0140.1	0.416
MA0141.1	MA0141.1	0.349
MA0142.1	MA0142.1	0.459
MA0143.1	MA0143.1	0.786
MA0144.1	MA0144.1	0.129
MA0145.1	MA0145.1	0.108
MA0146.1	MA0146.1	0.961
MA0147.1	MA0147.1	0.565
MA0148.1	MA0148.1	0.0571
MA0149.1	MA0149.1	0.12
MA0150.1	MA0150.1	0.721
MA0152.1	MA0152.1	0.841
MA0153.1	MA0153.1	0.221
MA0154.1	MA0154.1	7.93483e-4
MA0155.1	MA0155.1	0.464
MA0156.1	MA0156.1	0.0174
MA0157.1	MA0157.1	0.0721
MA0159.1	MA0159.1	0.596
MA0160.1	MA0160.1	0.191
MA0162.1	MA0162.1	0.975
MA0163.1	MA0163.1	9.77497e-5
MA0164.1	MA0164.1	0.262
MA0258.1	MA0258.1	0.00252
MA0259.1	MA0259.1	0.583

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13063

Novel motif	Logo	P-value
1	1	0.163
10	10	0.105
100	100	0.793
101	101	0.175
102	102	0.784
103	103	0.785
104	104	0.396
105	105	0.0422
106	106	0.287
107	107	0.74
108	108	0.999
109	109	0.664
11	11	0.222
110	110	0.401
111	111	0.555
112	112	0.0326
113	113	9.84752e-4
114	114	0.162
115	115	0.676
116	116	0.989
117	117	0.012
118	118	0.98
119	119	0.165
12	12	0.214
120	120	0.833
121	121	0.496
122	122	0.684
123	123	0.00614
124	124	0.424
125	125	0.516
126	126	0.333
127	127	0.208
128	128	0.121
129	129	0.677
13	13	0.533
130	130	0.585
131	131	0.692
132	132	0.278
133	133	0.68
134	134	0.679
135	135	0.313
136	136	0.32
137	137	0.852
138	138	0.92
139	139	2.61306e-4
14	14	0.138
140	140	0.831
141	141	0.152
142	142	0.0317
143	143	0.74
144	144	0.857
145	145	0.145
146	146	0.32
147	147	0.475
148	148	0.503
149	149	0.405
15	15	0.249
150	150	0.387
151	151	0.544
152	152	0.74
153	153	0.364
154	154	0.76
155	155	0.00755
156	156	0.605
157	157	0.893
158	158	0.0778
159	159	0.424
16	16	0.782
160	160	0.423
161	161	0.311
162	162	0.39
163	163	0.0515
164	164	0.897
165	165	0.44
166	166	0.625
167	167	0.25
168	168	0.396
169	169	0.224
17	17	0.947
18	18	0.694
19	19	0.149
2	2	0.602
20	20	0.866
21	21	0.393
22	22	0.589
23	23	0.214
24	24	0.493
25	25	0.321
26	26	0.29
27	27	0.732
28	28	0.833
29	29	0.722
3	3	0.0999
30	30	0.724
31	31	0.634
32	32	0.0153
33	33	0.757
34	34	0.54
35	35	0.0243
36	36	0.258
37	37	0.323
38	38	0.245
39	39	0.932
4	4	0.232
40	40	0.871
41	41	0.349
42	42	0.23
43	43	0.0352
44	44	0.894
45	45	0.38
46	46	0.357
47	47	0.308
48	48	0.624
49	49	0.0313
5	5	0.018
50	50	0.899
51	51	0.604
52	52	0.705
53	53	0.486
54	54	0.612
55	55	0.529
56	56	0.599
57	57	0.991
58	58	0.0784
59	59	0.12
6	6	0.52
60	60	0.0417
61	61	0.644
62	62	0.0477
63	63	0.318
64	64	0.487
65	65	0.243
66	66	0.0952
67	67	0.713
68	68	0.714
69	69	0.179
7	7	0.0937
70	70	0.0214
71	71	0.364
72	72	0.19
73	73	0.999
74	74	0.977
75	75	0.156
76	76	0.999
77	77	0.617
78	78	0.467
79	79	0.62
8	8	0.972
80	80	0.043
81	81	0.721
82	82	0.0118
83	83	0.93
84	84	0.194
85	85	0.00505
86	86	0.0675
87	87	0.234
88	88	0.189
89	89	0.167
9	9	0.377
90	90	0.249
91	91	0.137
92	92	0.0478
93	93	0.453
94	94	0.385
95	95	0.827
96	96	0.196
97	97	0.548
98	98	0.308
99	99	0.0703

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13063

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
FF:0103764 NCI cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
0102424 (mesothelioma cell line sample)
0103764 (NCI cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005518
+|accession_numbers=CAGE;DRX007946;DRR008818;DRZ000243;DRZ001628;DRZ011593;DRZ012978
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000057,CL:0000077
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:46622205..46622218,-!p3@HOXB2!1.53!37.99!HOXB2;;chr10:8096631..8096660,+!p1@GATA3!1.48!34.98!GATA3;;chr17:46675558..46675577,-!p2@HOXB6!1.40!24.03!HOXB6;;chr11:65667884..65667895,-!p2@FOSL1!1.39!88.52!FOSL1;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.51!PITX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.32!32.69!TFAP2A;;chr5:72744594..72744609,-!p1@FOXD1!1.29!82.16!FOXD1;;chr15:83953397..83953425,-!p1@BNC1!1.28!20.50!BNC1;;chr17:46682321..46682362,-!p1@HOXB6!1.28!17.85!HOXB6;;chr11:65667846..65667868,-!p1@FOSL1!1.26!444.55!FOSL1;;chr6:10415276..10415341,-!p2@TFAP2A!1.24!20.14!TFAP2A;;chr17:46622229..46622257,-!p6@HOXB2!1.21!17.85!HOXB2;;chr11:61520075..61520136,+!p1@C11orf9!1.19!30.39!C11orf9;;chr17:46655704..46655718,-!p2@HOXB4!1.17!20.67!HOXB4;;chr18:19749541..19749557,+!p1@GATA6!1.16!42.23!GATA6;;chr17:46688334..46688385,-!p1@HOXB7!1.14!18.55!HOXB7;;chr8:106330656..106330684,+!p1@ZFPM2!1.13!32.86!ZFPM2;;chr5:139492456..139492489,+!p7@PURA!1.11!12.01!PURA;;chr17:46655672..46655697,-!p3@HOXB4!1.11!11.84!HOXB4;;chr10:8096772..8096787,+!p2@GATA3!1.09!13.25!GATA3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.08!11.13!HOXC5;;chr11:31832658..31832681,-!p1@PAX6!1.03!9.72!PAX6;;chr18:19749386..19749404,+!p2@GATA6!1.02!13.78!GATA6;;chr11:65686802..65686818,+!p6@DRAP1!1.01!16.26!DRAP1;;chr8:11561684..11561751,+!p1@GATA4!1.00!9.01!GATA4;;chr5:92918919..92918942,+!p1@NR2F1!0.99!40.29!NR2F1;;chr11:65686732..65686756,+!p2@DRAP1!0.99!37.63!DRAP1;;chr8:67525443..67525459,-!p2@MYBL1!0.98!12.90!MYBL1;;chr17:46703687..46703740,-!p1@HOXB9!0.98!8.48!HOXB9;;chr5:92918860..92918871,+!p10@NR2F1!0.95!8.83!NR2F1;;chr5:3595934..3595957,+!p2@IRX1!0.95!7.95!IRX1;;chr11:47236584..47236679,+!p1@DDB2!0.93!86.22!DDB2;;chr1:158985493..158985535,+!p4@IFI16!0.93!11.66!IFI16;;chr20:55204351..55204377,+!p1@TFAP2C!0.93!9.72!TFAP2C;;chr10:101292684..101292706,+!p1@NKX2-3!0.93!7.60!NKX2-3;;chr5:3595977..3595999,+!p1@IRX1!0.93!7.42!IRX1;;chr3:25470156..25470227,+!p2@RARB!0.93!7.42!RARB;;chr17:46675420..46675465,-!p3@HOXB6!0.92!8.48!HOXB6;;chr9:16705069..16705086,-!p3@BNC2!0.92!7.24!BNC2;;chr12:66218255..66218304,+!p3@HMGA2!0.91!19.79!HMGA2;;chr8:106330696..106330719,+!p2@ZFPM2!0.90!9.01!ZFPM2;;chr20:50721803..50721857,-!p2@ZFP64!0.89!10.95!ZFP64;;chr5:43067636..43067674,+!p6@ZNF131!0.89!9.19!ZNF131;;chr17:46622070..46622109,-!p1@HOXB2!0.88!15.20!HOXB2;;chr17:46687959..46688007,-!p2@HOXB7!0.88!9.19!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!0.88!6.54!HOXB8;;chr19:12203100..12203132,+!p1@ZNF788!0.87!13.43!ZNF788;;chr11:65687362..65687436,+!p3@DRAP1!0.86!30.04!DRAP1;;chr16:1429627..1429662,-!p2@UNKL!0.86!19.26!UNKL;;chr17:46622114..46622138,-!p4@HOXB2!0.86!9.89!HOXB2;;chr11:46299199..46299233,+!p1@CREB3L1!0.85!33.04!CREB3L1;;chr5:134369879..134369898,-!p2@PITX1!0.85!6.01!PITX1;;chr11:46299539..46299620,+!p2@CREB3L1!0.83!10.07!CREB3L1;;chr2:237077022..237077038,-!p1@GBX2!0.83!5.83!GBX2;;chr8:77593474..77593612,+!p1@ZFHX4!0.82!25.44!ZFHX4;;chr11:65668011..65668020,-!p3@FOSL1!0.82!5.65!FOSL1;;chr17:46692457..46692484,-!p2@HOXB8!0.82!5.65!HOXB8;;chr2:102091144..102091183,-!p2@RFX8!0.82!5.65!RFX8;;chr20:55205825..55205847,+!p2@TFAP2C!0.82!5.65!TFAP2C;;chr7:35293685..35293718,-!p1@TBX20!0.81!5.48!TBX20;;chr6:34204921..34204939,+!p3@HMGA1!0.80!174.75!HMGA1;;chr12:27485762..27485776,+!p3@ARNTL2!0.80!15.20!ARNTL2;;chr17:46622440..46622477,-!p5@HOXB2!0.80!6.01!HOXB2;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.57!MXD3;;chr12:66218598..66218645,+!p2@HMGA2!0.78!25.27!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.78!14.84!OSR1;;chr3:141087393..141087426,+!p3@ZBTB38!0.77!21.03!ZBTB38;;chr2:71127699..71127744,+!p1@VAX2!0.77!10.78!VAX2;;chr4:57522166..57522260,-!p2@HOPX!0.77!5.65!HOPX;;chr3:25469815..25469866,+!p3@RARB!0.77!4.95!RARB;;chr1:3569072..3569093,+!p1@TP73!0.77!4.95!TP73;;chr5:3595961..3595975,+!p3@IRX1!0.77!4.95!IRX1;;chr7:101917407..101917443,+!p3@CUX1!0.77!4.95!CUX1;;chr12:66218836..66218888,+!p1@HMGA2!0.76!48.94!HMGA2;;chr12:54447599..54447630,+!p3@HOXC4!0.75!5.83!HOXC4;;chr17:46806067..46806097,-!p1@HOXB13!0.75!4.59!HOXB13;;chr21:36421535..36421610,-!p2@RUNX1!0.74!17.67!RUNX1;;chr20:39946361..39946379,-!p2@ZHX3!0.74!14.49!ZHX3;;chr5:72744445..72744466,-!p2@FOXD1!0.73!7.60!FOXD1;;chr2:96012397..96012417,+!p3@KCNIP3!0.73!4.42!KCNIP3;;chr12:77459306..77459365,-!p1@E2F7!0.71!58.48!E2F7;;chr6:10412392..10412409,-!p4@TFAP2A!0.71!4.77!TFAP2A;;chr6:1389789..1389821,+!p1@FOXF2!0.70!5.83!FOXF2;;chr16:86544113..86544145,+!p1@FOXF1!0.70!5.12!FOXF1;;chr17:46691732..46691766,-!p4@HOXB8!0.70!4.06!HOXB8;;chr2:102091566..102091581,-!p1@RFX8!0.70!4.06!RFX8;;chr12:124873357..124873401,-!p1@NCOR2!0.69!52.12!NCOR2;;chr20:32274179..32274213,-!p1@E2F1!0.69!29.51!E2F1;;chr5:92918894..92918912,+!p2@NR2F1!0.69!14.14!NR2F1;;chr8:67525473..67525518,-!p1@MYBL1!0.69!9.72!MYBL1;;chr18:19749517..19749531,+!p3@GATA6!0.69!7.42!GATA6;;chr20:45142154..45142227,-!p1@ZNF334!0.68!8.13!ZNF334;;chr5:92919100..92919135,+!p3@NR2F1!0.68!4.77!NR2F1;;chr11:120107344..120107351,+!p1@POU2F3!0.68!4.77!POU2F3;;chr12:2986275..2986363,-!p1@FOXM1!0.67!42.23!FOXM1;;chr2:239756671..239756732,+!p1@TWIST2!0.67!13.43!TWIST2;;chr15:67418047..67418093,+!p4@SMAD3!0.67!4.77!SMAD3;;chr17:46622175..46622186,-!p12@HOXB2!0.67!3.71!HOXB2;;chr17:46675586..46675600,-!p6@HOXB6!0.67!3.71!HOXB6;;chr17:46675539..46675551,-!p7@HOXB6!0.66!3.53!HOXB6;;chr5:92918768..92918783,+!p8@NR2F1!0.66!3.53!NR2F1;;chr6:31126291..31126399,+!p1@TCF19!0.65!38.87!TCF19;;chr5:72743793..72743855,-!p4@FOXD1!0.65!4.24!FOXD1;;chr5:92918956..92918969,+!p4@NR2F1!0.64!3.71!NR2F1;;chr1:6479968..6479986,-!p1@HES2!0.64!3.36!HES2;;chr17:46806098..46806118,-!p3@HOXB13!0.64!3.36!HOXB13;;chr20:42295745..42295765,+!p1@MYBL2!0.63!62.90!MYBL2;;chr12:53614115..53614154,-!p1@RARG!0.62!20.14!RARG;;chr6:85473156..85473210,-!p2@TBX18!0.62!4.06!TBX18;;chr6:134210243..134210257,+!p1@TCF21!0.62!3.18!TCF21;;chr7:27153454..27153469,-!p2@HOXA3!0.62!3.18!HOXA3;;chr11:32457075..32457095,-!p1@WT1!0.62!3.18!WT1;;chr12:54447637..54447659,+!p4@HOXC4!0.62!3.18!HOXC4;;chr17:46688310..46688323,-!p4@HOXB7!0.62!3.18!HOXB7;;chr17:46621937..46621966,-!p2@HOXB2!0.61!9.54!HOXB2;;chr20:2673383..2673441,+!p1@EBF4!0.61!5.30!EBF4;;chr11:47236489..47236567,+!p2@DDB2!0.60!49.65!DDB2;;chr3:141087339..141087387,+!p2@ZBTB38!0.60!37.28!ZBTB38;;chr10:96122645..96122675,-!p2@NOC3L!0.60!16.79!NOC3L;;chr8:145669791..145669834,-!p1@TONSL!0.60!9.89!TONSL;;chr19:58341656..58341694,+!p5@ZNF587!0.60!3.71!ZNF587;;chr1:158985469..158985489,+!p7@IFI16!0.60!3.71!IFI16;;chr15:67418119..67418162,+!p5@SMAD3!0.60!3.36!SMAD3;;chr17:46692624..46692659,-!p3@HOXB8!0.60!3.00!HOXB8;;chr11:65688877..65688891,+!p13@DRAP1!0.60!3.00!DRAP1;;chr6:152126830..152126847,+!p4@ESR1!0.60!3.00!ESR1;;chr2:45236579..45236596,-!p2@SIX2!0.60!3.00!SIX2;;chr20:42295713..42295738,+!p2@MYBL2!0.59!20.67!MYBL2;;chr10:8095593..8095625,+!p3@GATA3!0.59!3.53!GATA3;;chr3:168864315..168864339,-!p2@MECOM!0.58!5.12!MECOM;;chr1:247171316..247171336,-!p3@ZNF695!0.58!4.59!ZNF695;;chr10:48355030..48355090,+!p1@ZNF488!0.58!3.89!ZNF488;;chr15:83953373..83953386,-!p2@BNC1!0.58!2.83!BNC1;;chr22:19748231..19748317,+!p1@TBX1!0.58!2.83!TBX1;;chr2:45236540..45236577,-!p1@SIX2!0.58!2.83!SIX2;;chr3:25470062..25470084,+!p4@RARB!0.58!2.83!RARB;;chr6:10415484..10415508,-!p3@TFAP2A!0.58!2.83!TFAP2A;;chr12:3068544..3068597,+!p1@TEAD4!0.57!19.79!TEAD4;;chr17:46655730..46655791,-!p1@HOXB4!0.57!7.77!HOXB4;;chr12:66218378..66218401,+!p6@HMGA2!0.57!4.59!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!0.57!4.24!HMGA2;;chr11:65687243..65687276,+!p8@DRAP1!0.57!3.89!DRAP1;;chr5:72744562..72744573,-!p3@FOXD1!0.57!3.53!FOXD1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.56!236.06!TAX1BP3;;chr13:73633131..73633149,+!p1@KLF5!0.56!34.81!KLF5;;chr3:150126759..150126784,+!p2@TSC22D2!0.56!14.67!TSC22D2;;chr19:50431973..50431998,+!p5@ATF5!0.56!3.53!ATF5;;chr2:172949484..172949522,+!p1@DLX1!0.56!2.65!DLX1;;chr16:31076332..31076388,-!p3@ZNF668!0.56!2.65!ZNF668;;chr6:10412576..10412599,-!p5@TFAP2A!0.56!2.65!TFAP2A;;chr3:178789522..178789564,-!p2@ZMAT3!0.55!23.50!ZMAT3;;chr14:61116183..61116208,-!p1@SIX1!0.55!11.84!SIX1;;chr12:3069037..3069119,+!p2@TEAD4!0.55!10.60!TEAD4;;chr15:67357924..67357952,+!p2@SMAD3!0.54!20.32!SMAD3;;chr3:128206762..128206781,-!p2@GATA2!0.54!19.26!GATA2;;chr7:26191809..26191890,+!p1@NFE2L3!0.54!15.20!NFE2L3;;chr12:66218183..66218209,+!p4@HMGA2!0.54!5.48!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!0.54!4.77!TWIST2;;chr19:53496768..53496799,-!p1@ZNF702P!0.54!4.24!ZNF702P;;chr20:55205791..55205817,+!p3@TFAP2C!0.54!2.47!TFAP2C;;chr2:237076992..237077008,-!p2@GBX2!0.54!2.47!GBX2;;chr12:54402745..54402788,+!p1@HOXC8!0.54!2.47!HOXC8;;chr5:134369973..134369984,-!p3@PITX1!0.54!2.47!PITX1;;chr5:92918789..92918800,+!p12@NR2F1!0.54!2.47!NR2F1;;chr7:27196267..27196311,-!p1@HOXA7!0.54!2.47!HOXA7;;chr17:46622143..46622152,-!p14@HOXB2!0.54!2.47!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.54!2.47!HOXB6;;chr17:46692287..46692317,-!p7@HOXB8!0.54!2.47!HOXB8;;chr12:27485785..27485816,+!p1@ARNTL2!0.53!21.20!ARNTL2;;chr19:45579725..45579743,-!p1@ZNF296!0.52!12.90!ZNF296;;chr15:96874244..96874259,+!p5@NR2F2!0.52!6.71!NR2F2;;chr15:96873861..96873872,+!p9@NR2F2!0.52!5.65!NR2F2;;chr19:22817119..22817145,+!p1@ZNF492!0.52!4.42!ZNF492;;chr2:74730430..74730451,-!p1@LBX2!0.52!4.24!LBX2;;chr3:178789993..178790049,-!p5@ZMAT3!0.52!3.71!ZMAT3;;chr2:63277948..63277974,+!p1@OTX1!0.52!2.30!OTX1;;chr3:141087562..141087594,+!p12@ZBTB38!0.52!2.30!ZBTB38;;chr15:67418177..67418204,+!p9@SMAD3!0.52!2.30!SMAD3;;chr17:46692318..46692362,-!p5@HOXB8!0.52!2.30!HOXB8;;chr11:32457103..32457123,-!p3@WT1!0.52!2.30!WT1;;chr20:21494684..21494708,-!p1@NKX2-2!0.52!2.30!NKX2-2;;chr1:158979792..158979814,+!p2@IFI16!0.51!27.74!IFI16;;chr1:35656508..35656584,-!p2@SFPQ!0.51!8.83!SFPQ;;chr7:19157043..19157088,-!p2@TWIST1!0.51!6.71!TWIST1;;chr8:67525524..67525543,-!p3@MYBL1!0.51!4.24!MYBL1;;chr8:145159846..145159889,+!p6@MAF1!0.51!3.53!MAF1;;chr17:70117153..70117174,+!p1@SOX9!0.50!29.33!SOX9;;chr9:1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+|ffid_belonging_in_development=CL:0000134,CL:0000222
 |fonse_cell_line=FF:0100400,FF:0100453,FF:0102424
 |fonse_cell_line_closure=FF:0100400,FF:0100453,FF:0102424
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H2052.CNhs13063.10847-111F1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H2052.CNhs13063.10847-111F1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aNCI-H2052.CNhs13063.10847-111F1.hg38.nobarcode.bam
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 |id=FF:10847-111F1
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10847
 |name=mesothelioma cell line:NCI-H2052
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
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-|profile_rnaseq=,,,
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@@ Line 60: / Line 78: @@
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 |sample_cell_line=NCI-H2052
@@ Line 81: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10847-111F1;search_select_hide=table117:FF:10847-111F1
 }}

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FF:10847-111F1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:09, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0