FF:10826-111C7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005508 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007857;DRR008729;DRZ000154;DRZ001539;DRZ011504;DRZ012889 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:1036,DOID:8692 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:1036,DOID:8692 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0102580,FF:0101035,FF:0100740,FF:0100664 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chrX:48644984..48645005,+!p1@GATA1!2.36!229.75!GATA1;;chr17:40441354..40441410,+!p2@STAT5A!2.07!115.96!STAT5A;;chr20:56100179..56100208,-!p1@CTCFL!1.99!97.34!CTCFL;;chr12:54694758..54694805,-!p1@NFE2!1.89!91.97!NFE2;;chr17:46703687..46703740,-!p1@HOXB9!1.83!66.12!HOXB9;;chr6:135502501..135502546,+!p1@MYB!1.71!59.41!MYB;;chr8:37963466..37963506,+!p3@ASH2L!1.68!57.56!ASH2L;;chr19:12998003..12998021,-!p1@KLF1!1.68!46.49!KLF1;;chr12:54785074..54785122,-!p2@ZNF385A!1.67!69.31!ZNF385A;;chr9:135854091..135854159,+!p1@GFI1B!1.67!45.98!GFI1B;;chr12:54694807..54694832,-!p3@NFE2!1.64!42.96!NFE2;;chr5:134369905..134369972,-!p1@PITX1!1.63!63.27!PITX1;;chr12:54689532..54689551,-!p4@NFE2!1.59!38.10!NFE2;;chr12:54694653..54694672,-!p2@NFE2!1.55!34.24!NFE2;;chr20:31350184..31350200,+!p1@DNMT3B!1.50!63.10!DNMT3B;;chr3:128206762..128206781,-!p2@GATA2!1.48!176.55!GATA2;;chr3:128212033..128212051,-!p1@GATA2!1.47!28.36!GATA2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.45!247.70!ZNF595;;chr19:13213511..13213545,-!p2@LYL1!1.45!29.20!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.42!29.37!MYB;;chr10:94449703..94449718,+!p1@HHEX!1.29!70.15!HHEX;;chrX:48644976..48644983,+!p2@GATA1!1.25!16.61!GATA1;;chr12:54785054..54785072,-!p4@ZNF385A!1.24!18.63!ZNF385A;;chr10:70320074..70320106,+!p1@TET1!1.22!31.55!TET1;;chrX:48645010..48645015,+!p3@GATA1!1.20!14.77!GATA1;;chr17:46622205..46622218,-!p3@HOXB2!1.19!16.61!HOXB2;;chr5:88178983..88179012,-!p1@MEF2C!1.17!105.90!MEF2C;;chr6:135502472..135502489,+!p3@MYB!1.15!13.26!MYB;;chr12:54689552..54689574,-!p6@NFE2!1.15!13.26!NFE2;;chr17:46622229..46622257,-!p6@HOXB2!1.14!15.10!HOXB2;;chr17:40469520..40469532,-!p12@STAT3!1.13!12.42!STAT3;;chr19:13213555..13213568,-!p5@LYL1!1.12!12.25!LYL1;;chr20:56100155..56100163,-!p2@CTCFL!1.12!12.08!CTCFL;;chr20:50159198..50159299,-!p1@NFATC2!1.11!17.29!NFATC2;;chr1:47695003..47695042,-!p2@TAL1!1.10!11.58!TAL1;;chr12:56415246..56415286,+!p2@IKZF4!1.10!11.58!IKZF4;;chr4:174451370..174451387,-!p1@HAND2!1.09!11.24!HAND2;;chr22:19748231..19748317,+!p1@TBX1!1.08!11.08!TBX1;;chr1:47697881..47697910,-!p4@TAL1!1.07!10.74!TAL1;;chr10:124895472..124895508,+!p1@HMX3!1.07!10.74!HMX3;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.07!10.74!SOHLH2;;chr7:50343634..50343717,+!p2@IKZF1!1.06!10.40!IKZF1;;chr17:41623692..41623715,-!p1@ETV4!1.04!42.96!ETV4;;chr2:200323414..200323455,-!p1@SATB2!1.04!21.31!SATB2;;chr11:32457075..32457095,-!p1@WT1!1.04!10.07!WT1;;chr6:20402102..20402152,+!p1@E2F3!1.02!39.77!E2F3;;chr22:22863052..22863133,-!p1@ZNF280B!1.02!25.34!ZNF280B;;chr22:22874610..22874616,-!p1@ZNF280A!1.02!9.40!ZNF280A;;chr17:40469457..40469494,-!p14@STAT3!1.02!9.40!STAT3;;chr19:22235279..22235301,+!p1@ZNF257!1.00!17.12!ZNF257;;chr3:141747459..141747475,-!p1@TFDP2!0.99!74.01!TFDP2;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.66!ZFPM2;;chr11:61520075..61520136,+!p1@C11orf9!0.98!18.29!C11orf9;;chr5:134369879..134369898,-!p2@PITX1!0.98!8.56!PITX1;;chr8:145701192..145701241,-!p1@FOXH1!0.98!8.56!FOXH1;;chr9:135854074..135854089,+!p2@GFI1B!0.98!8.56!GFI1B;;chr17:40440177..40440190,+!p6@STAT5A!0.98!8.56!STAT5A;;chr20:42295713..42295738,+!p2@MYBL2!0.97!50.18!MYBL2;;chr8:37963407..37963454,+!p2@ASH2L!0.96!24.84!ASH2L;;chr6:85473156..85473210,-!p2@TBX18!0.96!10.07!TBX18;;chr12:56414795..56414836,+!p4@IKZF4!0.96!8.06!IKZF4;;chr17:46655730..46655791,-!p1@HOXB4!0.95!20.47!HOXB4;;chr2:200322654..200322707,-!p2@SATB2!0.94!11.41!SATB2;;chr10:94449675..94449694,+!p2@HHEX!0.92!20.14!HHEX;;chr11:32457103..32457123,-!p3@WT1!0.91!7.05!WT1;;chr2:200322259..200322280,-!p5@SATB2!0.91!7.05!SATB2;;chr17:40469366..40469383,-!p17@STAT3!0.91!7.05!STAT3;;chr17:45928521..45928539,-!p1@SP6!0.91!7.05!SP6;;chr17:46682321..46682362,-!p1@HOXB6!0.91!7.05!HOXB6;;chr17:40441330..40441344,+!p9@STAT5A!0.90!6.88!STAT5A;;chr2:145277640..145277771,-!p1@ZEB2!0.89!96.16!ZEB2;;chr17:79881332..79881348,-!p3@MAFG!0.89!10.24!MAFG;;chr6:34204672..34204692,+!p1@HMGA1!0.88!780.20!HMGA1;;chr10:35484053..35484076,+!p1@CREM!0.88!17.29!CREM;;chr11:47400045..47400060,-!p6@SPI1!0.88!6.55!SPI1;;chr9:124976185..124976212,-!p4@LHX6!0.88!6.55!LHX6;;chr17:41277372..41277418,-!p1@BRCA1!0.87!24.67!BRCA1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.87!6.38!ZBED1;;chr5:88179017..88179046,-!p2@MEF2C!0.86!26.68!MEF2C;;chr2:239148671..239148686,-!p1@HES6!0.86!23.83!HES6;;chr3:138665969..138665993,-!p2@FOXL2!0.86!6.21!FOXL2;;chr6:34204642..34204664,+!p2@HMGA1!0.85!873.34!HMGA1;;chr16:68119324..68119364,+!p1@NFATC3!0.85!28.70!NFATC3;;chr3:141747441..141747452,-!p4@TFDP2!0.85!8.73!TFDP2;;chr10:51572408..51572454,+!p3@NCOA4!0.83!35.91!NCOA4;;chr7:64363638..64363667,+!p1@ZNF273!0.83!30.88!ZNF273;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.83!27.86!TAL1;;chr8:106330696..106330719,+!p2@ZFPM2!0.83!7.55!ZFPM2;;chr15:76629123..76629151,+!p1@ISL2!0.83!6.38!ISL2;;chr3:128207349..128207386,-!p3@GATA2!0.83!5.71!GATA2;;chr17:46622440..46622477,-!p5@HOXB2!0.82!6.38!HOXB2;;chr19:52074502..52074587,+!p1@ZNF175!0.81!21.15!ZNF175;;chr6:12008986..12009016,+!p3@HIVEP1!0.81!17.96!HIVEP1;;chr11:6947720..6947812,+!p1@ZNF215!0.81!7.22!ZNF215;;chr16:68118689..68118733,+!p3@NFATC3!0.80!14.10!NFATC3;;chr12:54694738..54694749,-!p5@NFE2!0.80!5.37!NFE2;;chr14:37131058..37131139,+!p1@PAX9!0.80!5.37!PAX9;;chr3:141747950..141748004,-!p7@TFDP2!0.80!5.37!TFDP2;;chr7:148581360..148581425,-!p1@EZH2!0.79!27.52!EZH2;;chr17:46703826..46703845,-!p3@HOXB9!0.79!5.20!HOXB9;;chr11:47400078..47400106,-!p1@SPI1!0.79!5.20!SPI1;;chr19:926001..926046,+!p1@ARID3A!0.78!18.63!ARID3A;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.89!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.78!5.03!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.78!5.03!HOXB9;;chr2:74229812..74229867,+!p1@TET3!0.77!13.09!TET3;;chr17:46655704..46655718,-!p2@HOXB4!0.77!7.55!HOXB4;;chr8:37963511..37963523,+!p4@ASH2L!0.77!4.87!ASH2L;;chr20:62680984..62680999,-!p1@SOX18!0.76!6.55!SOX18;;chr9:124976154..124976177,-!p5@LHX6!0.76!4.70!LHX6;;chr20:42295745..42295765,+!p1@MYBL2!0.75!83.74!MYBL2;;chr17:46622070..46622109,-!p1@HOXB2!0.75!11.08!HOXB2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.75!7.89!ZC3H11A;;chr7:148581327..148581347,-!p2@EZH2!0.74!16.78!EZH2;;chr4:4291861..4291913,-!p1@LYAR!0.73!113.95!LYAR;;chr17:46622114..46622138,-!p4@HOXB2!0.73!7.05!HOXB2;;chr5:133450365..133450444,+!p1@TCF7!0.72!21.48!TCF7;;chr18:55102598..55102623,+!p1@ONECUT2!0.72!4.20!ONECUT2;;chr12:54393880..54393962,+!p1@HOXC9!0.72!4.20!HOXC9;;chr13:41593425..41593480,-!p1@ELF1!0.70!28.87!ELF1;;chr10:70320041..70320065,+!p2@TET1!0.70!4.03!TET1;;chr9:135854058..135854072,+!p3@GFI1B!0.70!4.03!GFI1B;;chr6:134274354..134274371,+!p1@TBPL1!0.69!117.31!TBPL1;;chr5:138609782..138609826,+!p5@MATR3!0.69!28.36!MATR3;;chr22:20748434..20748455,+!p1@ZNF74!0.69!13.76!ZNF74;;chr19:23941680..23941704,-!p1@ZNF681!0.69!12.59!ZNF681;;chr17:40440446..40440464,+!p5@STAT5A!0.69!3.86!STAT5A;;chr12:54694686..54694697,-!p8@NFE2!0.69!3.86!NFE2;;chr3:138665937..138665968,-!p1@FOXL2!0.69!3.86!FOXL2;;chr8:28748099..28748141,+!p2@HMBOX1!0.68!13.26!HMBOX1;;chr1:247171347..247171366,-!p2@ZNF695!0.68!7.38!ZNF695;;chr11:120107344..120107351,+!p1@POU2F3!0.68!4.70!POU2F3;;chr1:8877692..8877732,-!p1@RERE!0.67!34.24!RERE;;chr17:41622765..41622821,-!p2@ETV4!0.67!6.04!ETV4;;chr6:20402070..20402082,+!p5@E2F3!0.67!4.36!E2F3;;chr11:47400032..47400043,-!p5@SPI1!0.67!3.69!SPI1;;chr19:926055..926068,+!p2@ARID3A!0.66!8.56!ARID3A;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!8.06!BHLHE40;;chr10:97889464..97889494,+!p3@ZNF518A!0.66!7.22!ZNF518A;;chr2:200322229..200322251,-!p3@SATB2!0.66!3.52!SATB2;;chr3:141748010..141748030,-!p8@TFDP2!0.66!3.52!TFDP2;;chr4:109089095..109089144,-!p6@LEF1!0.66!3.52!LEF1;;chr1:151032860..151032918,+!p1@MLLT11!0.65!47.66!MLLT11;;chr16:88519669..88519726,+!p1@ZFPM1!0.65!36.59!ZFPM1;;chr16:88519743..88519754,+!p2@ZFPM1!0.65!3.86!ZFPM1;;chr19:21264991..21265026,+!p1@ZNF714!0.64!25.84!ZNF714;;chr8:145669791..145669834,-!p1@TONSL!0.64!10.91!TONSL;;chr12:51566562..51566584,-!p2@TFCP2!0.64!10.74!TFCP2;;chr15:76629097..76629120,+!p2@ISL2!0.64!3.86!ISL2;;chr17:46622175..46622186,-!p12@HOXB2!0.64!3.36!HOXB2;;chr7:50348268..50348366,+!p4@IKZF1!0.64!3.36!IKZF1;;chr10:60145155..60145206,+!p1@TFAM!0.63!170.17!TFAM;;chr7:102985160..102985273,-!p1@DNAJC2!0.63!97.67!DNAJC2;;chr1:78444778..78444800,-!p2@FUBP1!0.63!67.97!FUBP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.63!19.47!CREB3L1;;chr3:168864315..168864339,-!p2@MECOM!0.63!5.87!MECOM;;chr1:45805872..45805900,+!p2@TOE1!0.62!8.73!TOE1;;chr11:64764435..64764449,-!p1@BATF2!0.62!4.70!BATF2;;chr17:42295777..42295816,-!p7@UBTF!0.62!4.03!UBTF;;chr12:56415287..56415300,+!p5@IKZF4!0.62!3.19!IKZF4;;chr9:124976328..124976372,-!p2@LHX6!0.62!3.19!LHX6;;chr4:4291837..4291859,-!p2@LYAR!0.61!11.75!LYAR;;chr2:70314240..70314256,+!p4@PCBP1!0.61!7.05!PCBP1;;chr19:12203100..12203132,+!p1@ZNF788!0.61!6.88!ZNF788;;chr9:127533582..127533615,-!p1@NR6A1!0.61!4.87!NR6A1;;chr19:59084922..59084947,-!p3@MZF1!0.60!7.55!MZF1;;chr12:3068466..3068495,+!p3@TEAD4!0.60!7.22!TEAD4;;chr1:40367530..40367597,-!p1@MYCL1!0.60!6.04!MYCL1;;chr19:13213465..13213478,-!p7@LYL1!0.60!3.02!LYL1;;chr13:79177703..79177729,-!p2@POU4F1!0.60!3.02!POU4F1;;chr6:56954867..56954882,+!p2@ZNF451!0.59!9.90!ZNF451;;chr1:226595726..226595737,-!p2@PARP1!0.59!8.06!PARP1;;chr8:145701166..145701187,-!p2@FOXH1!0.59!2.85!FOXH1;;chr2:172949484..172949522,+!p1@DLX1!0.59!2.85!DLX1;;chr11:32457413..32457431,-!p2@WT1!0.59!2.85!WT1;;chr7:64254793..64254813,+!p1@ZNF138!0.58!39.94!ZNF138;;chr14:21994337..21994442,-!p1@SALL2!0.58!9.06!SALL2;;chr19:9695169..9695188,-!p1@ZNF121!0.57!59.24!ZNF121;;chr19:21950362..21950388,-!p1@ZNF100!0.57!30.38!ZNF100;;chr10:51572339..51572376,+!p4@NCOA4!0.57!7.05!NCOA4;;chr17:41623075..41623101,-!p9@ETV4!0.57!3.36!ETV4;;chr17:40441412..40441419,+!p20@STAT5A!0.57!2.69!STAT5A;;chr17:45928443..45928473,-!p2@SP6!0.57!2.69!SP6;;chr7:50344289..50344323,+!p1@IKZF1!0.57!2.69!IKZF1;;chr2:63277948..63277974,+!p1@OTX1!0.57!2.69!OTX1;;chr8:128748470..128748487,+!p1@MYC!0.56!368.87!MYC;;chr22:2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| |expression_enrichment_score=chrX:48644984..48645005,+!p1@GATA1!2.36!229.75!GATA1;;chr17:40441354..40441410,+!p2@STAT5A!2.07!115.96!STAT5A;;chr20:56100179..56100208,-!p1@CTCFL!1.99!97.34!CTCFL;;chr12:54694758..54694805,-!p1@NFE2!1.89!91.97!NFE2;;chr17:46703687..46703740,-!p1@HOXB9!1.83!66.12!HOXB9;;chr6:135502501..135502546,+!p1@MYB!1.71!59.41!MYB;;chr8:37963466..37963506,+!p3@ASH2L!1.68!57.56!ASH2L;;chr19:12998003..12998021,-!p1@KLF1!1.68!46.49!KLF1;;chr12:54785074..54785122,-!p2@ZNF385A!1.67!69.31!ZNF385A;;chr9:135854091..135854159,+!p1@GFI1B!1.67!45.98!GFI1B;;chr12:54694807..54694832,-!p3@NFE2!1.64!42.96!NFE2;;chr5:134369905..134369972,-!p1@PITX1!1.63!63.27!PITX1;;chr12:54689532..54689551,-!p4@NFE2!1.59!38.10!NFE2;;chr12:54694653..54694672,-!p2@NFE2!1.55!34.24!NFE2;;chr20:31350184..31350200,+!p1@DNMT3B!1.50!63.10!DNMT3B;;chr3:128206762..128206781,-!p2@GATA2!1.48!176.55!GATA2;;chr3:128212033..128212051,-!p1@GATA2!1.47!28.36!GATA2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.45!247.70!ZNF595;;chr19:13213511..13213545,-!p2@LYL1!1.45!29.20!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.42!29.37!MYB;;chr10:94449703..94449718,+!p1@HHEX!1.29!70.15!HHEX;;chrX:48644976..48644983,+!p2@GATA1!1.25!16.61!GATA1;;chr12:54785054..54785072,-!p4@ZNF385A!1.24!18.63!ZNF385A;;chr10:70320074..70320106,+!p1@TET1!1.22!31.55!TET1;;chrX:48645010..48645015,+!p3@GATA1!1.20!14.77!GATA1;;chr17:46622205..46622218,-!p3@HOXB2!1.19!16.61!HOXB2;;chr5:88178983..88179012,-!p1@MEF2C!1.17!105.90!MEF2C;;chr6:135502472..135502489,+!p3@MYB!1.15!13.26!MYB;;chr12:54689552..54689574,-!p6@NFE2!1.15!13.26!NFE2;;chr17:46622229..46622257,-!p6@HOXB2!1.14!15.10!HOXB2;;chr17:40469520..40469532,-!p12@STAT3!1.13!12.42!STAT3;;chr19:13213555..13213568,-!p5@LYL1!1.12!12.25!LYL1;;chr20:56100155..56100163,-!p2@CTCFL!1.12!12.08!CTCFL;;chr20:50159198..50159299,-!p1@NFATC2!1.11!17.29!NFATC2;;chr1:47695003..47695042,-!p2@TAL1!1.10!11.58!TAL1;;chr12:56415246..56415286,+!p2@IKZF4!1.10!11.58!IKZF4;;chr4:174451370..174451387,-!p1@HAND2!1.09!11.24!HAND2;;chr22:19748231..19748317,+!p1@TBX1!1.08!11.08!TBX1;;chr1:47697881..47697910,-!p4@TAL1!1.07!10.74!TAL1;;chr10:124895472..124895508,+!p1@HMX3!1.07!10.74!HMX3;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.07!10.74!SOHLH2;;chr7:50343634..50343717,+!p2@IKZF1!1.06!10.40!IKZF1;;chr17:41623692..41623715,-!p1@ETV4!1.04!42.96!ETV4;;chr2:200323414..200323455,-!p1@SATB2!1.04!21.31!SATB2;;chr11:32457075..32457095,-!p1@WT1!1.04!10.07!WT1;;chr6:20402102..20402152,+!p1@E2F3!1.02!39.77!E2F3;;chr22:22863052..22863133,-!p1@ZNF280B!1.02!25.34!ZNF280B;;chr22:22874610..22874616,-!p1@ZNF280A!1.02!9.40!ZNF280A;;chr17:40469457..40469494,-!p14@STAT3!1.02!9.40!STAT3;;chr19:22235279..22235301,+!p1@ZNF257!1.00!17.12!ZNF257;;chr3:141747459..141747475,-!p1@TFDP2!0.99!74.01!TFDP2;;chr8:106330656..106330684,+!p1@ZFPM2!0.99!23.66!ZFPM2;;chr11:61520075..61520136,+!p1@C11orf9!0.98!18.29!C11orf9;;chr5:134369879..134369898,-!p2@PITX1!0.98!8.56!PITX1;;chr8:145701192..145701241,-!p1@FOXH1!0.98!8.56!FOXH1;;chr9:135854074..135854089,+!p2@GFI1B!0.98!8.56!GFI1B;;chr17:40440177..40440190,+!p6@STAT5A!0.98!8.56!STAT5A;;chr20:42295713..42295738,+!p2@MYBL2!0.97!50.18!MYBL2;;chr8:37963407..37963454,+!p2@ASH2L!0.96!24.84!ASH2L;;chr6:85473156..85473210,-!p2@TBX18!0.96!10.07!TBX18;;chr12:56414795..56414836,+!p4@IKZF4!0.96!8.06!IKZF4;;chr17:46655730..46655791,-!p1@HOXB4!0.95!20.47!HOXB4;;chr2:200322654..200322707,-!p2@SATB2!0.94!11.41!SATB2;;chr10:94449675..94449694,+!p2@HHEX!0.92!20.14!HHEX;;chr11:32457103..32457123,-!p3@WT1!0.91!7.05!WT1;;chr2:200322259..200322280,-!p5@SATB2!0.91!7.05!SATB2;;chr17:40469366..40469383,-!p17@STAT3!0.91!7.05!STAT3;;chr17:45928521..45928539,-!p1@SP6!0.91!7.05!SP6;;chr17:46682321..46682362,-!p1@HOXB6!0.91!7.05!HOXB6;;chr17:40441330..40441344,+!p9@STAT5A!0.90!6.88!STAT5A;;chr2:145277640..145277771,-!p1@ZEB2!0.89!96.16!ZEB2;;chr17:79881332..79881348,-!p3@MAFG!0.89!10.24!MAFG;;chr6:34204672..34204692,+!p1@HMGA1!0.88!780.20!HMGA1;;chr10:35484053..35484076,+!p1@CREM!0.88!17.29!CREM;;chr11:47400045..47400060,-!p6@SPI1!0.88!6.55!SPI1;;chr9:124976185..124976212,-!p4@LHX6!0.88!6.55!LHX6;;chr17:41277372..41277418,-!p1@BRCA1!0.87!24.67!BRCA1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.87!6.38!ZBED1;;chr5:88179017..88179046,-!p2@MEF2C!0.86!26.68!MEF2C;;chr2:239148671..239148686,-!p1@HES6!0.86!23.83!HES6;;chr3:138665969..138665993,-!p2@FOXL2!0.86!6.21!FOXL2;;chr6:34204642..34204664,+!p2@HMGA1!0.85!873.34!HMGA1;;chr16:68119324..68119364,+!p1@NFATC3!0.85!28.70!NFATC3;;chr3:141747441..141747452,-!p4@TFDP2!0.85!8.73!TFDP2;;chr10:51572408..51572454,+!p3@NCOA4!0.83!35.91!NCOA4;;chr7:64363638..64363667,+!p1@ZNF273!0.83!30.88!ZNF273;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.83!27.86!TAL1;;chr8:106330696..106330719,+!p2@ZFPM2!0.83!7.55!ZFPM2;;chr15:76629123..76629151,+!p1@ISL2!0.83!6.38!ISL2;;chr3:128207349..128207386,-!p3@GATA2!0.83!5.71!GATA2;;chr17:46622440..46622477,-!p5@HOXB2!0.82!6.38!HOXB2;;chr19:52074502..52074587,+!p1@ZNF175!0.81!21.15!ZNF175;;chr6:12008986..12009016,+!p3@HIVEP1!0.81!17.96!HIVEP1;;chr11:6947720..6947812,+!p1@ZNF215!0.81!7.22!ZNF215;;chr16:68118689..68118733,+!p3@NFATC3!0.80!14.10!NFATC3;;chr12:54694738..54694749,-!p5@NFE2!0.80!5.37!NFE2;;chr14:37131058..37131139,+!p1@PAX9!0.80!5.37!PAX9;;chr3:141747950..141748004,-!p7@TFDP2!0.80!5.37!TFDP2;;chr7:148581360..148581425,-!p1@EZH2!0.79!27.52!EZH2;;chr17:46703826..46703845,-!p3@HOXB9!0.79!5.20!HOXB9;;chr11:47400078..47400106,-!p1@SPI1!0.79!5.20!SPI1;;chr19:926001..926046,+!p1@ARID3A!0.78!18.63!ARID3A;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.89!ETV4;;chr17:46621146..46621180,-!p10@HOXB2!0.78!5.03!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.78!5.03!HOXB9;;chr2:74229812..74229867,+!p1@TET3!0.77!13.09!TET3;;chr17:46655704..46655718,-!p2@HOXB4!0.77!7.55!HOXB4;;chr8:37963511..37963523,+!p4@ASH2L!0.77!4.87!ASH2L;;chr20:62680984..62680999,-!p1@SOX18!0.76!6.55!SOX18;;chr9:124976154..124976177,-!p5@LHX6!0.76!4.70!LHX6;;chr20:42295745..42295765,+!p1@MYBL2!0.75!83.74!MYBL2;;chr17:46622070..46622109,-!p1@HOXB2!0.75!11.08!HOXB2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.75!7.89!ZC3H11A;;chr7:148581327..148581347,-!p2@EZH2!0.74!16.78!EZH2;;chr4:4291861..4291913,-!p1@LYAR!0.73!113.95!LYAR;;chr17:46622114..46622138,-!p4@HOXB2!0.73!7.05!HOXB2;;chr5:133450365..133450444,+!p1@TCF7!0.72!21.48!TCF7;;chr18:55102598..55102623,+!p1@ONECUT2!0.72!4.20!ONECUT2;;chr12:54393880..54393962,+!p1@HOXC9!0.72!4.20!HOXC9;;chr13:41593425..41593480,-!p1@ELF1!0.70!28.87!ELF1;;chr10:70320041..70320065,+!p2@TET1!0.70!4.03!TET1;;chr9:135854058..135854072,+!p3@GFI1B!0.70!4.03!GFI1B;;chr6:134274354..134274371,+!p1@TBPL1!0.69!117.31!TBPL1;;chr5:138609782..138609826,+!p5@MATR3!0.69!28.36!MATR3;;chr22:20748434..20748455,+!p1@ZNF74!0.69!13.76!ZNF74;;chr19:23941680..23941704,-!p1@ZNF681!0.69!12.59!ZNF681;;chr17:40440446..40440464,+!p5@STAT5A!0.69!3.86!STAT5A;;chr12:54694686..54694697,-!p8@NFE2!0.69!3.86!NFE2;;chr3:138665937..138665968,-!p1@FOXL2!0.69!3.86!FOXL2;;chr8:28748099..28748141,+!p2@HMBOX1!0.68!13.26!HMBOX1;;chr1:247171347..247171366,-!p2@ZNF695!0.68!7.38!ZNF695;;chr11:120107344..120107351,+!p1@POU2F3!0.68!4.70!POU2F3;;chr1:8877692..8877732,-!p1@RERE!0.67!34.24!RERE;;chr17:41622765..41622821,-!p2@ETV4!0.67!6.04!ETV4;;chr6:20402070..20402082,+!p5@E2F3!0.67!4.36!E2F3;;chr11:47400032..47400043,-!p5@SPI1!0.67!3.69!SPI1;;chr19:926055..926068,+!p2@ARID3A!0.66!8.56!ARID3A;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!8.06!BHLHE40;;chr10:97889464..97889494,+!p3@ZNF518A!0.66!7.22!ZNF518A;;chr2:200322229..200322251,-!p3@SATB2!0.66!3.52!SATB2;;chr3:141748010..141748030,-!p8@TFDP2!0.66!3.52!TFDP2;;chr4:109089095..109089144,-!p6@LEF1!0.66!3.52!LEF1;;chr1:151032860..151032918,+!p1@MLLT11!0.65!47.66!MLLT11;;chr16:88519669..88519726,+!p1@ZFPM1!0.65!36.59!ZFPM1;;chr16:88519743..88519754,+!p2@ZFPM1!0.65!3.86!ZFPM1;;chr19:21264991..21265026,+!p1@ZNF714!0.64!25.84!ZNF714;;chr8:145669791..145669834,-!p1@TONSL!0.64!10.91!TONSL;;chr12:51566562..51566584,-!p2@TFCP2!0.64!10.74!TFCP2;;chr15:76629097..76629120,+!p2@ISL2!0.64!3.86!ISL2;;chr17:46622175..46622186,-!p12@HOXB2!0.64!3.36!HOXB2;;chr7:50348268..50348366,+!p4@IKZF1!0.64!3.36!IKZF1;;chr10:60145155..60145206,+!p1@TFAM!0.63!170.17!TFAM;;chr7:102985160..102985273,-!p1@DNAJC2!0.63!97.67!DNAJC2;;chr1:78444778..78444800,-!p2@FUBP1!0.63!67.97!FUBP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.63!19.47!CREB3L1;;chr3:168864315..168864339,-!p2@MECOM!0.63!5.87!MECOM;;chr1:45805872..45805900,+!p2@TOE1!0.62!8.73!TOE1;;chr11:64764435..64764449,-!p1@BATF2!0.62!4.70!BATF2;;chr17:42295777..42295816,-!p7@UBTF!0.62!4.03!UBTF;;chr12:56415287..56415300,+!p5@IKZF4!0.62!3.19!IKZF4;;chr9:124976328..124976372,-!p2@LHX6!0.62!3.19!LHX6;;chr4:4291837..4291859,-!p2@LYAR!0.61!11.75!LYAR;;chr2:70314240..70314256,+!p4@PCBP1!0.61!7.05!PCBP1;;chr19:12203100..12203132,+!p1@ZNF788!0.61!6.88!ZNF788;;chr9:127533582..127533615,-!p1@NR6A1!0.61!4.87!NR6A1;;chr19:59084922..59084947,-!p3@MZF1!0.60!7.55!MZF1;;chr12:3068466..3068495,+!p3@TEAD4!0.60!7.22!TEAD4;;chr1:40367530..40367597,-!p1@MYCL1!0.60!6.04!MYCL1;;chr19:13213465..13213478,-!p7@LYL1!0.60!3.02!LYL1;;chr13:79177703..79177729,-!p2@POU4F1!0.60!3.02!POU4F1;;chr6:56954867..56954882,+!p2@ZNF451!0.59!9.90!ZNF451;;chr1:226595726..226595737,-!p2@PARP1!0.59!8.06!PARP1;;chr8:145701166..145701187,-!p2@FOXH1!0.59!2.85!FOXH1;;chr2:172949484..172949522,+!p1@DLX1!0.59!2.85!DLX1;;chr11:32457413..32457431,-!p2@WT1!0.59!2.85!WT1;;chr7:64254793..64254813,+!p1@ZNF138!0.58!39.94!ZNF138;;chr14:21994337..21994442,-!p1@SALL2!0.58!9.06!SALL2;;chr19:9695169..9695188,-!p1@ZNF121!0.57!59.24!ZNF121;;chr19:21950362..21950388,-!p1@ZNF100!0.57!30.38!ZNF100;;chr10:51572339..51572376,+!p4@NCOA4!0.57!7.05!NCOA4;;chr17:41623075..41623101,-!p9@ETV4!0.57!3.36!ETV4;;chr17:40441412..40441419,+!p20@STAT5A!0.57!2.69!STAT5A;;chr17:45928443..45928473,-!p2@SP6!0.57!2.69!SP6;;chr7:50344289..50344323,+!p1@IKZF1!0.57!2.69!IKZF1;;chr2:63277948..63277974,+!p1@OTX1!0.57!2.69!OTX1;;chr8:128748470..128748487,+!p1@MYC!0.56!368.87!MYC;;chr22:2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| ||
|ffid_belonging_in_development=CL:0000049,CL:0000134 | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 36: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520cell%2520line%253aK562%2520ENCODE%252c%2520biol_rep3.CNhs12336.10826-111C7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10826-111C7 | |id=FF:10826-111C7 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100664 | |is_a=EFO:0002091;;FF:0000210;;FF:0100664 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12336 | |||
|library_id_phase_based=2:CNhs12336 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10826 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10826 | |||
|name=chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3 | |name=chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12336,LSID913,release011,COMPLETED | |profile_hcage=CNhs12336,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 78: | ||
|rna_weight_ug=69.987 | |rna_weight_ug=69.987 | ||
|sample_age=53 | |sample_age=53 | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=K562 | |sample_cell_line=K562 | ||
| Line 75: | Line 95: | ||
|sample_note= | |sample_note= | ||
|sample_sex=female | |sample_sex=female | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=GATA6:3.72843593209;MYB:2.05150464831;ELK1,4_GABP{A,B1}:2.00337734644;STAT5{A,B}:1.55522551783;NFY{A,B,C}:1.50612836929;E2F1..5:1.49453629113;CDX1,2,4:1.44193232442;POU3F1..4:1.31510832556;NRF1:1.2650096368;PBX1:1.16721213806;NR5A1,2:1.14185211949;POU2F1..3:1.11837369834;ZBTB16:1.10686317931;NFIX:1.08720084498;HOXA9_MEIS1:1.06920645625;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.06564855296;ZNF143:1.05343792169;YY1:0.902502052986;PITX1..3:0.885759322554;NR6A1:0.87613389778;CRX:0.858137969126;OCT4_SOX2{dimer}:0.760914171561;POU1F1:0.714875543189;STAT1,3:0.697727734479;HOX{A5,B5}:0.657768756582;PAX8:0.643696366911;ADNP_IRX_SIX_ZHX:0.62994016939;HOX{A6,A7,B6,B7}:0.603469860912;AHR_ARNT_ARNT2:0.602036776915;HES1:0.585929735852;ELF1,2,4:0.567865717285;ZNF148:0.566875140907;T:0.563035600516;ESRRA:0.555284510999;FOXQ1:0.550129750287;NFE2:0.53133417055;NANOG:0.499242508865;RBPJ:0.487420771859;SPZ1:0.465823599349;RORA:0.425542392723;NR1H4:0.425419810012;CUX2:0.424537320677;IKZF1:0.395394625608;SOX{8,9,10}:0.391764154609;BREu{core}:0.385185299821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.384301258752;SMAD1..7,9:0.361244944666;PAX3,7:0.306438257218;TOPORS:0.291240733509;NKX2-1,4:0.278554296415;PRRX1,2:0.263573481072;AR:0.240062526579;NKX2-3_NKX2-5:0.21494275273;FOXA2:0.203737849929;GFI1:0.200385128783;NANOG{mouse}:0.191868069718;IKZF2:0.181041895926;ARID5B:0.11555894846;NKX3-2:0.10627661182;HOX{A4,D4}:0.0927556514965;ONECUT1,2:0.0838623880675;AIRE:0.081343839072;EVI1:0.071933466462;SNAI1..3:0.0702664866206;HNF4A_NR2F1,2:0.0570793702842;RXRA_VDR{dimer}:0.0550751662106;ALX1:0.026279674034;CREB1:0.021841336828;VSX1,2:-0.00165111493043;HAND1,2:-0.0124269677323;ZEB1:-0.0302476130128;PAX4:-0.0509240804661;bHLH_family:-0.0524790848309;EN1,2:-0.0691294041314;FOXD3:-0.0859405485627;PPARG:-0.0906897550132;MYOD1:-0.0998463096425;TEF:-0.100316105852;ATF4:-0.109038808181;SPIB:-0.123704454539;NKX2-2,8:-0.135729739191;LEF1_TCF7_TCF7L1,2:-0.146864629239;POU5F1:-0.15137335937;FOSL2:-0.163153773237;ZNF384:-0.167479134761;NFE2L2:-0.172339533988;HLF:-0.173140019405;ATF5_CREB3:-0.184332171988;POU6F1:-0.187215563182;NKX6-1,2:-0.201096226706;PAX2:-0.213392519663;PAX6:-0.219753956757;HIF1A:-0.220932577299;SPI1:-0.222366953591;CEBPA,B_DDIT3:-0.231482411384;TFDP1:-0.237316825432;PDX1:-0.242122352769;HNF1A:-0.262207049833;MEF2{A,B,C,D}:-0.266958101487;MAFB:-0.268110934043;FOXN1:-0.303577008491;BACH2:-0.333350395039;RUNX1..3:-0.336585078676;FOXP1:-0.359603558634;FOS_FOS{B,L1}_JUN{B,D}:-0.374415741372;NFKB1_REL_RELA:-0.391336011042;NKX3-1:-0.398363531261;FOX{F1,F2,J1}:-0.406693290177;ETS1,2:-0.415623014718;UFEwm:-0.421415501248;HSF1,2:-0.432276680679;EGR1..3:-0.436657204686;FOXP3:-0.442951851264;STAT2,4,6:-0.448198069317;RFX2..5_RFXANK_RFXAP:-0.453123719218;SP1:-0.45386508029;ZBTB6:-0.461416282855;SOX5:-0.494790867502;RFX1:-0.505960899067;GATA4:-0.521584378986;KLF4:-0.523278170715;FOX{I1,J2}:-0.524448016865;NFE2L1:-0.541103171698;RXR{A,B,G}:-0.549301655715;TLX2:-0.551261894048;XCPE1{core}:-0.55340784593;TGIF1:-0.562287209243;PAX1,9:-0.582115469757;LMO2:-0.599192246871;RREB1:-0.603047470666;FOXM1:-0.624444990116;SOX2:-0.635044998728;SOX17:-0.637656926067;LHX3,4:-0.662079894631;ZFP161:-0.662607996513;TFAP4:-0.667509600149;REST:-0.680367368829;EP300:-0.686077003901;ALX4:-0.687842153998;PATZ1:-0.690167056613;NHLH1,2:-0.69573132286;NFIL3:-0.73490038006;IRF7:-0.780716347854;ATF2:-0.780857818084;ZIC1..3:-0.782435977748;NFATC1..3:-0.784166182473;ZNF238:-0.798443399238;DBP:-0.804943636542;DMAP1_NCOR{1,2}_SMARC:-0.815529600056;JUN:-0.820628922189;GTF2I:-0.830087311839;SREBF1,2:-0.855050924365;TP53:-0.858179748844;SRF:-0.862286479745;XBP1:-0.870094717364;MZF1:-0.874123659575;MED-1{core}:-0.88701992909;BPTF:-0.900575620346;TEAD1:-0.904425947489;GTF2A1,2:-0.960456237002;CDC5L:-0.974150396268;TBP:-1.02468298782;HMGA1,2:-1.02902824019;FOX{D1,D2}:-1.04278691076;ZNF423:-1.09237172274;NR3C1:-1.11965017273;GCM1,2:-1.12384581527;MAZ:-1.13221113439;IRF1,2:-1.13855209931;MYFfamily:-1.17202492289;TFAP2{A,C}:-1.18022028922;ESR1:-1.1807300467;MYBL2:-1.19267128927;HMX1:-1.2103678837;TBX4,5:-1.22308821738;HBP1_HMGB_SSRP1_UBTF:-1.23305473993;EBF1:-1.23708398426;ATF6:-1.26027926943;PRDM1:-1.26605537076;TLX1..3_NFIC{dimer}:-1.27926064008;HIC1:-1.30033484284;PAX5:-1.32468362411;GFI1B:-1.45522043397;TAL1_TCF{3,4,12}:-1.49861527867;MTF1:-1.50695872123;GLI1..3:-1.51655498367;FOXO1,3,4:-1.5199658775;GZF1:-1.53756428251;MTE{core}:-1.56057392297;TFAP2B:-1.72917646693;FOXL1:-1.7602451765;TFCP2:-2.36272046395 | |top_motifs=GATA6:3.72843593209;MYB:2.05150464831;ELK1,4_GABP{A,B1}:2.00337734644;STAT5{A,B}:1.55522551783;NFY{A,B,C}:1.50612836929;E2F1..5:1.49453629113;CDX1,2,4:1.44193232442;POU3F1..4:1.31510832556;NRF1:1.2650096368;PBX1:1.16721213806;NR5A1,2:1.14185211949;POU2F1..3:1.11837369834;ZBTB16:1.10686317931;NFIX:1.08720084498;HOXA9_MEIS1:1.06920645625;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.06564855296;ZNF143:1.05343792169;YY1:0.902502052986;PITX1..3:0.885759322554;NR6A1:0.87613389778;CRX:0.858137969126;OCT4_SOX2{dimer}:0.760914171561;POU1F1:0.714875543189;STAT1,3:0.697727734479;HOX{A5,B5}:0.657768756582;PAX8:0.643696366911;ADNP_IRX_SIX_ZHX:0.62994016939;HOX{A6,A7,B6,B7}:0.603469860912;AHR_ARNT_ARNT2:0.602036776915;HES1:0.585929735852;ELF1,2,4:0.567865717285;ZNF148:0.566875140907;T:0.563035600516;ESRRA:0.555284510999;FOXQ1:0.550129750287;NFE2:0.53133417055;NANOG:0.499242508865;RBPJ:0.487420771859;SPZ1:0.465823599349;RORA:0.425542392723;NR1H4:0.425419810012;CUX2:0.424537320677;IKZF1:0.395394625608;SOX{8,9,10}:0.391764154609;BREu{core}:0.385185299821;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.384301258752;SMAD1..7,9:0.361244944666;PAX3,7:0.306438257218;TOPORS:0.291240733509;NKX2-1,4:0.278554296415;PRRX1,2:0.263573481072;AR:0.240062526579;NKX2-3_NKX2-5:0.21494275273;FOXA2:0.203737849929;GFI1:0.200385128783;NANOG{mouse}:0.191868069718;IKZF2:0.181041895926;ARID5B:0.11555894846;NKX3-2:0.10627661182;HOX{A4,D4}:0.0927556514965;ONECUT1,2:0.0838623880675;AIRE:0.081343839072;EVI1:0.071933466462;SNAI1..3:0.0702664866206;HNF4A_NR2F1,2:0.0570793702842;RXRA_VDR{dimer}:0.0550751662106;ALX1:0.026279674034;CREB1:0.021841336828;VSX1,2:-0.00165111493043;HAND1,2:-0.0124269677323;ZEB1:-0.0302476130128;PAX4:-0.0509240804661;bHLH_family:-0.0524790848309;EN1,2:-0.0691294041314;FOXD3:-0.0859405485627;PPARG:-0.0906897550132;MYOD1:-0.0998463096425;TEF:-0.100316105852;ATF4:-0.109038808181;SPIB:-0.123704454539;NKX2-2,8:-0.135729739191;LEF1_TCF7_TCF7L1,2:-0.146864629239;POU5F1:-0.15137335937;FOSL2:-0.163153773237;ZNF384:-0.167479134761;NFE2L2:-0.172339533988;HLF:-0.173140019405;ATF5_CREB3:-0.184332171988;POU6F1:-0.187215563182;NKX6-1,2:-0.201096226706;PAX2:-0.213392519663;PAX6:-0.219753956757;HIF1A:-0.220932577299;SPI1:-0.222366953591;CEBPA,B_DDIT3:-0.231482411384;TFDP1:-0.237316825432;PDX1:-0.242122352769;HNF1A:-0.262207049833;MEF2{A,B,C,D}:-0.266958101487;MAFB:-0.268110934043;FOXN1:-0.303577008491;BACH2:-0.333350395039;RUNX1..3:-0.336585078676;FOXP1:-0.359603558634;FOS_FOS{B,L1}_JUN{B,D}:-0.374415741372;NFKB1_REL_RELA:-0.391336011042;NKX3-1:-0.398363531261;FOX{F1,F2,J1}:-0.406693290177;ETS1,2:-0.415623014718;UFEwm:-0.421415501248;HSF1,2:-0.432276680679;EGR1..3:-0.436657204686;FOXP3:-0.442951851264;STAT2,4,6:-0.448198069317;RFX2..5_RFXANK_RFXAP:-0.453123719218;SP1:-0.45386508029;ZBTB6:-0.461416282855;SOX5:-0.494790867502;RFX1:-0.505960899067;GATA4:-0.521584378986;KLF4:-0.523278170715;FOX{I1,J2}:-0.524448016865;NFE2L1:-0.541103171698;RXR{A,B,G}:-0.549301655715;TLX2:-0.551261894048;XCPE1{core}:-0.55340784593;TGIF1:-0.562287209243;PAX1,9:-0.582115469757;LMO2:-0.599192246871;RREB1:-0.603047470666;FOXM1:-0.624444990116;SOX2:-0.635044998728;SOX17:-0.637656926067;LHX3,4:-0.662079894631;ZFP161:-0.662607996513;TFAP4:-0.667509600149;REST:-0.680367368829;EP300:-0.686077003901;ALX4:-0.687842153998;PATZ1:-0.690167056613;NHLH1,2:-0.69573132286;NFIL3:-0.73490038006;IRF7:-0.780716347854;ATF2:-0.780857818084;ZIC1..3:-0.782435977748;NFATC1..3:-0.784166182473;ZNF238:-0.798443399238;DBP:-0.804943636542;DMAP1_NCOR{1,2}_SMARC:-0.815529600056;JUN:-0.820628922189;GTF2I:-0.830087311839;SREBF1,2:-0.855050924365;TP53:-0.858179748844;SRF:-0.862286479745;XBP1:-0.870094717364;MZF1:-0.874123659575;MED-1{core}:-0.88701992909;BPTF:-0.900575620346;TEAD1:-0.904425947489;GTF2A1,2:-0.960456237002;CDC5L:-0.974150396268;TBP:-1.02468298782;HMGA1,2:-1.02902824019;FOX{D1,D2}:-1.04278691076;ZNF423:-1.09237172274;NR3C1:-1.11965017273;GCM1,2:-1.12384581527;MAZ:-1.13221113439;IRF1,2:-1.13855209931;MYFfamily:-1.17202492289;TFAP2{A,C}:-1.18022028922;ESR1:-1.1807300467;MYBL2:-1.19267128927;HMX1:-1.2103678837;TBX4,5:-1.22308821738;HBP1_HMGB_SSRP1_UBTF:-1.23305473993;EBF1:-1.23708398426;ATF6:-1.26027926943;PRDM1:-1.26605537076;TLX1..3_NFIC{dimer}:-1.27926064008;HIC1:-1.30033484284;PAX5:-1.32468362411;GFI1B:-1.45522043397;TAL1_TCF{3,4,12}:-1.49861527867;MTF1:-1.50695872123;GLI1..3:-1.51655498367;FOXO1,3,4:-1.5199658775;GZF1:-1.53756428251;MTE{core}:-1.56057392297;TFAP2B:-1.72917646693;FOXL1:-1.7602451765;TFCP2:-2.36272046395 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10826-111C7;search_select_hide=table117:FF:10826-111C7 | |||
}} | }} | ||
Latest revision as of 15:07, 3 June 2020
| Name: | chronic myelogenous leukemia cell line:K562 ENCODE, biol_rep3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12336 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12336
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12336
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0307 |
| 10 | 10 | 0.0686 |
| 100 | 100 | 0.331 |
| 101 | 101 | 0.568 |
| 102 | 102 | 0.35 |
| 103 | 103 | 0.922 |
| 104 | 104 | 0.643 |
| 105 | 105 | 0.941 |
| 106 | 106 | 0.046 |
| 107 | 107 | 0.017 |
| 108 | 108 | 0.962 |
| 109 | 109 | 0.021 |
| 11 | 11 | 0.182 |
| 110 | 110 | 0.187 |
| 111 | 111 | 0.383 |
| 112 | 112 | 0.869 |
| 113 | 113 | 0.136 |
| 114 | 114 | 0.0304 |
| 115 | 115 | 0.572 |
| 116 | 116 | 0.508 |
| 117 | 117 | 0.00819 |
| 118 | 118 | 0.225 |
| 119 | 119 | 0.686 |
| 12 | 12 | 0.903 |
| 120 | 120 | 0.531 |
| 121 | 121 | 0.896 |
| 122 | 122 | 0.0961 |
| 123 | 123 | 0.915 |
| 124 | 124 | 0.495 |
| 125 | 125 | 0.608 |
| 126 | 126 | 0.17 |
| 127 | 127 | 0.119 |
| 128 | 128 | 0.0732 |
| 129 | 129 | 0.765 |
| 13 | 13 | 0.00115 |
| 130 | 130 | 0.034 |
| 131 | 131 | 0.476 |
| 132 | 132 | 0.0935 |
| 133 | 133 | 0.177 |
| 134 | 134 | 0.893 |
| 135 | 135 | 0.257 |
| 136 | 136 | 0.0343 |
| 137 | 137 | 0.274 |
| 138 | 138 | 0.583 |
| 139 | 139 | 0.391 |
| 14 | 14 | 0.538 |
| 140 | 140 | 0.016 |
| 141 | 141 | 0.0166 |
| 142 | 142 | 0.572 |
| 143 | 143 | 0.682 |
| 144 | 144 | 0.64 |
| 145 | 145 | 0.817 |
| 146 | 146 | 0.881 |
| 147 | 147 | 0.614 |
| 148 | 148 | 0.713 |
| 149 | 149 | 0.159 |
| 15 | 15 | 0.509 |
| 150 | 150 | 0.432 |
| 151 | 151 | 0.387 |
| 152 | 152 | 0.128 |
| 153 | 153 | 0.858 |
| 154 | 154 | 0.339 |
| 155 | 155 | 0.17 |
| 156 | 156 | 0.61 |
| 157 | 157 | 0.485 |
| 158 | 158 | 0.979 |
| 159 | 159 | 0.142 |
| 16 | 16 | 0.714 |
| 160 | 160 | 0.979 |
| 161 | 161 | 0.0366 |
| 162 | 162 | 0.448 |
| 163 | 163 | 0.457 |
| 164 | 164 | 0.512 |
| 165 | 165 | 0.813 |
| 166 | 166 | 0.0413 |
| 167 | 167 | 0.396 |
| 168 | 168 | 0.572 |
| 169 | 169 | 0.558 |
| 17 | 17 | 0.771 |
| 18 | 18 | 0.941 |
| 19 | 19 | 0.902 |
| 2 | 2 | 0.23 |
| 20 | 20 | 0.0576 |
| 21 | 21 | 0.305 |
| 22 | 22 | 0.631 |
| 23 | 23 | 0.0166 |
| 24 | 24 | 0.128 |
| 25 | 25 | 0.332 |
| 26 | 26 | 0.138 |
| 27 | 27 | 0.285 |
| 28 | 28 | 0.445 |
| 29 | 29 | 0.0202 |
| 3 | 3 | 0.399 |
| 30 | 30 | 0.162 |
| 31 | 31 | 0.481 |
| 32 | 32 | 0.0525 |
| 33 | 33 | 0.0404 |
| 34 | 34 | 0.4 |
| 35 | 35 | 0.314 |
| 36 | 36 | 0.0346 |
| 37 | 37 | 0.222 |
| 38 | 38 | 0.314 |
| 39 | 39 | 0.24 |
| 4 | 4 | 0.0623 |
| 40 | 40 | 0.217 |
| 41 | 41 | 0.899 |
| 42 | 42 | 0.264 |
| 43 | 43 | 0.735 |
| 44 | 44 | 0.639 |
| 45 | 45 | 0.518 |
| 46 | 46 | 0.435 |
| 47 | 47 | 0.0282 |
| 48 | 48 | 0.198 |
| 49 | 49 | 0.255 |
| 5 | 5 | 0.982 |
| 50 | 50 | 0.959 |
| 51 | 51 | 0.907 |
| 52 | 52 | 0.0299 |
| 53 | 53 | 0.893 |
| 54 | 54 | 0.623 |
| 55 | 55 | 0.0425 |
| 56 | 56 | 0.814 |
| 57 | 57 | 0.544 |
| 58 | 58 | 0.502 |
| 59 | 59 | 0.892 |
| 6 | 6 | 0.289 |
| 60 | 60 | 0.362 |
| 61 | 61 | 0.0773 |
| 62 | 62 | 0.417 |
| 63 | 63 | 0.412 |
| 64 | 64 | 0.555 |
| 65 | 65 | 0.434 |
| 66 | 66 | 4.49955e-6 |
| 67 | 67 | 0.612 |
| 68 | 68 | 0.0829 |
| 69 | 69 | 0.741 |
| 7 | 7 | 0.0577 |
| 70 | 70 | 0.291 |
| 71 | 71 | 0.0438 |
| 72 | 72 | 0.288 |
| 73 | 73 | 0.994 |
| 74 | 74 | 0.445 |
| 75 | 75 | 0.00584 |
| 76 | 76 | 0.738 |
| 77 | 77 | 0.365 |
| 78 | 78 | 5.05109e-4 |
| 79 | 79 | 0.145 |
| 8 | 8 | 0.495 |
| 80 | 80 | 0.191 |
| 81 | 81 | 0.239 |
| 82 | 82 | 0.895 |
| 83 | 83 | 0.0775 |
| 84 | 84 | 0.548 |
| 85 | 85 | 0.161 |
| 86 | 86 | 0.709 |
| 87 | 87 | 0.0664 |
| 88 | 88 | 0.919 |
| 89 | 89 | 0.645 |
| 9 | 9 | 0.524 |
| 90 | 90 | 0.463 |
| 91 | 91 | 0.0127 |
| 92 | 92 | 0.539 |
| 93 | 93 | 0.78 |
| 94 | 94 | 0.782 |
| 95 | 95 | 0.0284 |
| 96 | 96 | 0.697 |
| 97 | 97 | 0.343 |
| 98 | 98 | 0.468 |
| 99 | 99 | 0.462 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12336
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100664 K-562 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0100664 (K-562 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
