FF:10817-111B7: Difference between revisions

Latest revision as of 15:06, 3 June 2020

Name:	epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3
Species:	Human (Homo sapiens)
Library ID:	CNhs12327
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	NA
cell type	epithelial cell
cell line	HelaS3
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004989

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12327		CAGE		DRX007884		DRR008756

Accession ID Hg19

Library id		BAM		CTSS
CNhs12327		DRZ000181		DRZ001566

Accession ID Hg38

Library id		BAM		CTSS
CNhs12327		DRZ011531		DRZ012916

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.162
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0.315
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.636
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0256
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0.606
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0845
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.117
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0.0343
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.027
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.00428
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0343
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0475
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.516
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0343
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00912
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0313
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.591
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0.0343
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12327

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.014
MA0003.1	MA0003.1	0.261
MA0004.1	MA0004.1	0.151
MA0006.1	MA0006.1	0.661
MA0007.1	MA0007.1	0.52
MA0009.1	MA0009.1	0.41
MA0014.1	MA0014.1	0.706
MA0017.1	MA0017.1	0.434
MA0018.2	MA0018.2	0.843
MA0019.1	MA0019.1	0.441
MA0024.1	MA0024.1	2.99694e-7
MA0025.1	MA0025.1	0.0566
MA0027.1	MA0027.1	0.73
MA0028.1	MA0028.1	4.38507e-8
MA0029.1	MA0029.1	0.0348
MA0030.1	MA0030.1	0.372
MA0031.1	MA0031.1	0.896
MA0035.2	MA0035.2	0.0103
MA0038.1	MA0038.1	0.159
MA0039.2	MA0039.2	0.0151
MA0040.1	MA0040.1	0.35
MA0041.1	MA0041.1	0.403
MA0042.1	MA0042.1	0.695
MA0043.1	MA0043.1	0.892
MA0046.1	MA0046.1	0.296
MA0047.2	MA0047.2	0.967
MA0048.1	MA0048.1	0.00334
MA0050.1	MA0050.1	0.082
MA0051.1	MA0051.1	0.535
MA0052.1	MA0052.1	3.77939e-5
MA0055.1	MA0055.1	5.73382e-5
MA0057.1	MA0057.1	0.605
MA0058.1	MA0058.1	0.0532
MA0059.1	MA0059.1	0.0374
MA0060.1	MA0060.1	2.49046e-11
MA0061.1	MA0061.1	0.0214
MA0062.2	MA0062.2	5.70112e-6
MA0065.2	MA0065.2	0.0257
MA0066.1	MA0066.1	0.811
MA0067.1	MA0067.1	0.197
MA0068.1	MA0068.1	0.059
MA0069.1	MA0069.1	0.623
MA0070.1	MA0070.1	0.315
MA0071.1	MA0071.1	0.116
MA0072.1	MA0072.1	0.232
MA0073.1	MA0073.1	0.274
MA0074.1	MA0074.1	0.521
MA0076.1	MA0076.1	5.00553e-7
MA0077.1	MA0077.1	0.881
MA0078.1	MA0078.1	0.14
MA0079.2	MA0079.2	0.47
MA0080.2	MA0080.2	1.01302e-7
MA0081.1	MA0081.1	0.364
MA0083.1	MA0083.1	4.66696e-4
MA0084.1	MA0084.1	0.448
MA0087.1	MA0087.1	0.629
MA0088.1	MA0088.1	7.56926e-4
MA0090.1	MA0090.1	0.537
MA0091.1	MA0091.1	0.027
MA0092.1	MA0092.1	0.419
MA0093.1	MA0093.1	0.1
MA0099.2	MA0099.2	0.0463
MA0100.1	MA0100.1	0.378
MA0101.1	MA0101.1	0.168
MA0102.2	MA0102.2	0.345
MA0103.1	MA0103.1	0.161
MA0104.2	MA0104.2	0.00146
MA0105.1	MA0105.1	0.301
MA0106.1	MA0106.1	0.945
MA0107.1	MA0107.1	0.0241
MA0108.2	MA0108.2	0.0669
MA0111.1	MA0111.1	0.575
MA0112.2	MA0112.2	0.612
MA0113.1	MA0113.1	0.722
MA0114.1	MA0114.1	0.0349
MA0115.1	MA0115.1	0.00511
MA0116.1	MA0116.1	0.511
MA0117.1	MA0117.1	0.635
MA0119.1	MA0119.1	0.296
MA0122.1	MA0122.1	0.513
MA0124.1	MA0124.1	0.706
MA0125.1	MA0125.1	0.604
MA0131.1	MA0131.1	0.0433
MA0135.1	MA0135.1	0.114
MA0136.1	MA0136.1	0.00632
MA0137.2	MA0137.2	0.203
MA0138.2	MA0138.2	0.0157
MA0139.1	MA0139.1	0.455
MA0140.1	MA0140.1	0.00658
MA0141.1	MA0141.1	0.0426
MA0142.1	MA0142.1	0.97
MA0143.1	MA0143.1	0.114
MA0144.1	MA0144.1	0.404
MA0145.1	MA0145.1	0.76
MA0146.1	MA0146.1	0.0958
MA0147.1	MA0147.1	0.00143
MA0148.1	MA0148.1	0.776
MA0149.1	MA0149.1	0.0287
MA0150.1	MA0150.1	0.632
MA0152.1	MA0152.1	0.392
MA0153.1	MA0153.1	0.567
MA0154.1	MA0154.1	0.16
MA0155.1	MA0155.1	0.0404
MA0156.1	MA0156.1	0.942
MA0157.1	MA0157.1	0.904
MA0159.1	MA0159.1	0.484
MA0160.1	MA0160.1	0.0586
MA0162.1	MA0162.1	0.747
MA0163.1	MA0163.1	0.213
MA0164.1	MA0164.1	0.638
MA0258.1	MA0258.1	0.772
MA0259.1	MA0259.1	0.0562

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12327

Novel motif	Logo	P-value
1	1	0.158
10	10	0.067
100	100	0.0559
101	101	0.995
102	102	0.948
103	103	0.101
104	104	0.92
105	105	0.421
106	106	0.0271
107	107	0.0879
108	108	0.325
109	109	0.0338
11	11	0.868
110	110	0.274
111	111	0.689
112	112	0.00848
113	113	0.0158
114	114	0.874
115	115	0.789
116	116	0.479
117	117	0.0787
118	118	0.784
119	119	0.945
12	12	0.727
120	120	0.554
121	121	0.397
122	122	0.538
123	123	0.54
124	124	0.626
125	125	0.443
126	126	0.824
127	127	0.991
128	128	0.00658
129	129	0.43
13	13	7.09021e-5
130	130	0.16
131	131	0.0896
132	132	0.761
133	133	0.168
134	134	0.251
135	135	0.0395
136	136	0.0182
137	137	0.17
138	138	0.759
139	139	0.633
14	14	0.367
140	140	0.898
141	141	0.359
142	142	0.644
143	143	0.389
144	144	0.703
145	145	0.203
146	146	0.495
147	147	0.259
148	148	0.341
149	149	0.0656
15	15	0.901
150	150	0.732
151	151	0.746
152	152	0.0972
153	153	0.19
154	154	0.842
155	155	0.696
156	156	0.542
157	157	0.24
158	158	0.138
159	159	0.303
16	16	0.553
160	160	0.745
161	161	0.196
162	162	0.484
163	163	0.932
164	164	0.276
165	165	0.51
166	166	0.256
167	167	0.146
168	168	0.53
169	169	0.714
17	17	0.603
18	18	0.0812
19	19	0.389
2	2	0.143
20	20	0.0359
21	21	0.775
22	22	0.731
23	23	6.34859e-4
24	24	0.336
25	25	0.652
26	26	0.527
27	27	0.195
28	28	0.566
29	29	0.0468
3	3	0.855
30	30	0.0901
31	31	0.254
32	32	0.114
33	33	0.382
34	34	0.151
35	35	0.73
36	36	0.127
37	37	0.597
38	38	0.704
39	39	0.747
4	4	0.675
40	40	0.0588
41	41	0.193
42	42	0.564
43	43	0.455
44	44	0.849
45	45	0.275
46	46	0.759
47	47	0.443
48	48	0.47
49	49	0.826
5	5	0.33
50	50	0.983
51	51	0.384
52	52	0.145
53	53	0.588
54	54	0.481
55	55	0.0282
56	56	0.679
57	57	0.581
58	58	0.979
59	59	0.407
6	6	0.646
60	60	0.176
61	61	0.143
62	62	0.63
63	63	0.677
64	64	0.705
65	65	0.107
66	66	4.71468e-5
67	67	0.617
68	68	0.891
69	69	0.652
7	7	0.16
70	70	0.103
71	71	0.0732
72	72	0.413
73	73	0.975
74	74	0.443
75	75	0.0571
76	76	0.192
77	77	0.757
78	78	0.273
79	79	0.349
8	8	0.48
80	80	0.0199
81	81	0.591
82	82	0.0508
83	83	0.794
84	84	0.598
85	85	0.0777
86	86	0.81
87	87	0.0348
88	88	0.685
89	89	0.106
9	9	0.215
90	90	0.0421
91	91	0.00848
92	92	0.0448
93	93	0.929
94	94	0.214
95	95	0.0709
96	96	0.15
97	97	0.62
98	98	0.488
99	99	0.512

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12327

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011472 human epitheloid carcinoma cell line: HelaS3 ENCODE sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011472 (human epitheloid carcinoma cell line: HelaS3 ENCODE sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007779
+|DRA_sample_Accession=CAGE@SAMD00004989
-|accession_numbers=CAGE;DRX007884;DRR008756;DRZ000181;DRZ001566
+|accession_numbers=CAGE;DRX007884;DRR008756;DRZ000181;DRZ001566;DRZ011531;DRZ012916
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10415484..10415508,-!p3@TFAP2A!1.65!43.19!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.47!42.70!PITX1;;chr6:10412600..10412637,-!p1@TFAP2A!1.46!45.41!TFAP2A;;chr6:10415276..10415341,-!p2@TFAP2A!1.45!33.17!TFAP2A;;chr12:85673868..85673881,+!p2@ALX1!1.43!25.78!ALX1;;chr17:8027418..8027432,-!p1@HES7!1.36!22.17!HES7;;chr13:73633131..73633149,+!p1@KLF5!1.35!221.88!KLF5;;chr5:134369879..134369898,-!p2@PITX1!1.34!20.94!PITX1;;chr2:45236540..45236577,-!p1@SIX2!1.30!18.97!SIX2;;chr18:55102628..55102646,+!p2@ONECUT2!1.30!18.97!ONECUT2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.29!18.72!ZBED1;;chr18:55102598..55102623,+!p1@ONECUT2!1.29!18.64!ONECUT2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.24!16.34!SEBOX;;chr12:85673977..85674015,+!p1@ALX1!1.23!15.93!ALX1;;chr3:12330560..12330579,+!p1@PPARG!1.22!18.07!PPARG;;chr1:201979743..201979762,+!p1@ELF3!1.20!14.95!ELF3;;chrX:131624056..131624069,-!p2@MBNL3!1.16!18.48!MBNL3;;chr3:128206762..128206781,-!p2@GATA2!1.15!81.46!GATA2;;chr10:35484053..35484076,+!p1@CREM!1.15!33.01!CREM;;chr3:128207349..128207386,-!p3@GATA2!1.15!13.06!GATA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.28!FOXQ1;;chr20:55204351..55204377,+!p1@TFAP2C!1.11!15.27!TFAP2C;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.99!HOXB6;;chr1:201979703..201979721,+!p2@ELF3!1.10!11.50!ELF3;;chr6:1389789..1389821,+!p1@FOXF2!1.09!15.60!FOXF2;;chr5:170736243..170736279,+!p1@TLX3!1.09!11.41!TLX3;;chr6:126240380..126240430,+!p2@NCOA7!1.08!29.07!NCOA7;;chr15:96875657..96875760,+!p14@NR2F2!1.06!17.49!NR2F2;;chr12:54378923..54378966,+!p1@HOXC10!1.06!10.43!HOXC10;;chr8:128748308..128748324,+!p2@MYC!1.05!287.08!MYC;;chr8:10588010..10588030,-!p1@SOX7!1.04!9.94!SOX7;;chr17:46687959..46688007,-!p2@HOXB7!1.03!13.38!HOXB7;;chr6:10412392..10412409,-!p4@TFAP2A!1.03!11.17!TFAP2A;;chr3:169381420..169381535,-!p1@MECOM!0.97!9.77!MECOM;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.97!8.38!SEBOX;;chr12:54380404..54380433,+!p3@HOXC10!0.97!8.29!HOXC10;;chr6:126240442..126240459,+!p4@NCOA7!0.95!10.10!NCOA7;;chr12:2986275..2986363,-!p1@FOXM1!0.93!77.93!FOXM1;;chr7:73038839..73038862,-!p1@MLXIPL!0.92!7.31!MLXIPL;;chr12:85674018..85674039,+!p3@ALX1!0.91!7.06!ALX1;;chr2:46524897..46524911,+!p2@EPAS1!0.90!19.95!EPAS1;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.18!HOXB7;;chr1:23857325..23857416,-!p2@E2F2!0.89!7.97!E2F2;;chr3:114790132..114790174,-!p18@ZBTB20!0.89!6.82!ZBTB20;;chr9:126774018..126774055,+!p1@LHX2!0.89!6.73!LHX2;;chr12:54366894..54366922,+!p2@HOXC11!0.88!6.57!HOXC11;;chrX:131623044..131623089,-!p1@MBNL3!0.87!27.76!MBNL3;;chr1:23857698..23857733,-!p1@E2F2!0.87!12.24!E2F2;;chr7:27224842..27224872,-!p1@HOXA11!0.86!6.32!HOXA11;;chr3:69915385..69915438,+!p3@MITF!0.86!6.32!MITF;;chr7:27196267..27196311,-!p1@HOXA7!0.86!6.24!HOXA7;;chr17:41277372..41277418,-!p1@BRCA1!0.85!23.32!BRCA1;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.16!PAX6;;chr12:54332608..54332636,+!p1@HOXC13!0.85!6.16!HOXC13;;chr6:1389989..1390019,+!p2@FOXF2!0.84!5.91!FOXF2;;chr6:20402102..20402152,+!p1@E2F3!0.83!25.05!E2F3;;chr8:128747661..128747703,+!p6@MYC!0.83!8.05!MYC;;chr20:42295745..42295765,+!p1@MYBL2!0.82!99.69!MYBL2;;chr6:10412576..10412599,-!p5@TFAP2A!0.81!5.50!TFAP2A;;chr3:32023232..32023273,+!p1@ZNF860!0.80!7.80!ZNF860;;chr8:55370487..55370503,+!p1@SOX17!0.80!5.34!SOX17;;chr12:54379136..54379150,+!p4@HOXC5!0.78!5.01!HOXC5;;chr12:54393880..54393962,+!p1@HOXC9!0.78!5.01!HOXC9;;chr20:42295713..42295738,+!p2@MYBL2!0.77!31.70!MYBL2;;chr13:100623375..100623425,-!p1@ZIC5!0.77!4.93!ZIC5;;chr1:151804244..151804310,-!p1@RORC!0.77!4.84!RORC;;chr20:32274179..32274213,-!p1@E2F1!0.76!34.32!E2F1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.76!4.76!HOXC5;;chr1:45805872..45805900,+!p2@TOE1!0.74!11.82!TOE1;;chr20:32274150..32274166,-!p2@E2F1!0.74!8.87!E2F1;;chr12:54366975..54367001,+!p1@HOXC11!0.74!4.52!HOXC11;;chrX:131623026..131623039,-!p5@MBNL3!0.74!4.43!MBNL3;;chr5:134369643..134369675,-!p4@PITX1!0.74!4.43!PITX1;;chr6:126240356..126240379,+!p7@NCOA7!0.73!5.42!NCOA7;;chr12:115121962..115121987,-!p1@TBX3!0.72!39.83!TBX3;;chr15:66994663..66994680,+!p1@SMAD6!0.72!11.00!SMAD6;;chr17:46687935..46687950,-!p3@HOXB7!0.72!4.27!HOXB7;;chr1:23885981..23886002,-!p1@ID3!0.71!815.16!ID3;;chr1:117602932..117602973,+!p1@TTF2!0.71!17.33!TTF2;;chr16:29818199..29818216,+!p11@MAZ!0.71!7.14!MAZ;;chr2:63277948..63277974,+!p1@OTX1!0.71!4.19!OTX1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.71!4.11!ZBTB7C;;chr5:92918919..92918942,+!p1@NR2F1!0.69!19.54!NR2F1;;chr9:99180617..99180658,-!p1@ZNF367!0.69!9.28!ZNF367;;chr12:54332652..54332671,+!p2@HOXC13!0.69!3.94!HOXC13;;chr3:138665937..138665968,-!p1@FOXL2!0.69!3.86!FOXL2;;chr13:73636516..73636532,+!p3@KLF5!0.68!4.43!KLF5;;chr21:38071430..38071456,+!p1@SIM2!0.68!3.78!SIM2;;chr11:47279504..47279563,+!p1@NR1H3!0.67!9.28!NR1H3;;chr20:6748325..6748352,+!p1@BMP2!0.67!5.58!BMP2;;chr16:54320158..54320200,-!p5@IRX3!0.67!5.58!IRX3;;chr1:44513995..44514031,+!p1@KLF17!0.67!3.70!KLF17;;chr12:52445218..52445237,+!p1@NR4A1!0.66!53.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@@ Line 40: / Line 40: @@
 |fonse_treatment_closure=
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep3.CNhs12327.10817-111B7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep3.CNhs12327.10817-111B7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10817-111B7
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-|library_id_phase_based=1:CNhs12327
+|library_id_phase_based=2:CNhs12327
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10817
 |name=epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep3
 |namespace=FANTOM5
@@ Line 50: / Line 59: @@
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@@ Line 89: / Line 99: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10817-111B7;search_select_hide=table117:FF:10817-111B7
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FF:10817-111B7: Difference between revisions

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Latest revision as of 15:06, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0