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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00004827
|accession_numbers=CAGE;DRX008020;DRR008892;DRZ000317;DRZ001702;DRZ011667;DRZ013052
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:2994,DOID:305,DOID:3095,DOID:4
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100306
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr5:153857778..153857794,-!p1@HAND1!2.52!332.84!HAND1;;chr3:27764190..27764208,-!p2@EOMES!2.24!173.70!EOMES;;chr14:57277178..57277203,-!p1@OTX2!2.12!131.39!OTX2;;chr3:27763807..27763822,-!p1@EOMES!1.85!69.56!EOMES;;chr7:19157248..19157268,-!p1@TWIST1!1.79!160.27!TWIST1;;chr10:8096631..8096660,+!p1@GATA3!1.72!62.34!GATA3;;chrX:136648279..136648295,+!p1@ZIC3!1.68!47.01!ZIC3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.67!45.86!LHX1;;chr20:31350184..31350200,+!p1@DNMT3B!1.66!89.70!DNMT3B;;chr8:145701192..145701241,-!p1@FOXH1!1.59!38.01!FOXH1;;chr10:8095593..8095625,+!p3@GATA3!1.56!40.92!GATA3;;chr16:54320617..54320643,-!p3@IRX3!1.53!41.43!IRX3;;chr5:174151612..174151633,+!p2@MSX2!1.52!31.80!MSX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.48!44.34!ZNF385A;;chr5:172662197..172662216,-!p1@NKX2-5!1.46!27.75!NKX2-5;;chr5:174151553..174151610,+!p1@MSX2!1.45!44.98!MSX2;;chr2:171571827..171571853,+!p1@SP5!1.45!27.11!SP5;;chr17:45933057..45933064,-!p3@SP6!1.45!27.11!SP6;;chr1:226411361..226411366,+!p1@MIXL1!1.43!25.85!MIXL1;;chr16:54320646..54320672,-!p2@IRX3!1.41!37.50!IRX3;;chr12:66218255..66218304,+!p3@HMGA2!1.40!63.73!HMGA2;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.86!PITX1;;chr12:54785054..54785072,-!p4@ZNF385A!1.38!25.85!ZNF385A;;chr16:30102547..30102556,-!p6@TBX6!1.38!22.93!TBX6;;chr16:54320675..54320715,-!p1@IRX3!1.37!47.77!IRX3;;chr2:25475120..25475176,-!p2@DNMT3A!1.36!29.65!DNMT3A;;chr9:127533519..127533573,-!p2@NR6A1!1.35!25.47!NR6A1;;chr14:37131058..37131139,+!p1@PAX9!1.35!21.54!PAX9;;chr12:56414795..56414836,+!p4@IKZF4!1.32!19.89!IKZF4;;chr7:35293685..35293718,-!p1@TBX20!1.32!19.76!TBX20;;chr11:63684602..63684664,-!p1@RCOR2!1.31!37.76!RCOR2;;chr14:35873136..35873155,-!p9@NFKBIA!1.31!22.68!NFKBIA;;chr10:8097321..8097348,+!p4@GATA3!1.31!19.51!GATA3;;chrX:136648297..136648319,+!p3@ZIC3!1.30!19.00!ZIC3;;chr12:66218183..66218209,+!p4@HMGA2!1.29!35.48!HMGA2;;chr15:90294478..90294480,-!p6@MESP1!1.28!18.24!MESP1;;chr10:8096772..8096787,+!p2@GATA3!1.26!20.27!GATA3;;chr11:125034640..125034655,+!p1@PKNOX2!1.26!17.23!PKNOX2;;chr12:66218378..66218401,+!p6@HMGA2!1.24!25.47!HMGA2;;chr8:11561684..11561751,+!p1@GATA4!1.24!16.47!GATA4;;chrX:136648643..136648711,+!p2@ZIC3!1.24!16.34!ZIC3;;chr12:19556998..19557013,+!p6@AEBP2!1.24!16.22!AEBP2;;chr12:3068544..3068597,+!p1@TEAD4!1.20!87.68!TEAD4;;chr5:153857800..153857812,-!p2@HAND1!1.19!14.32!HAND1;;chr1:221052733..221052749,+!p2@HLX!1.18!18.24!HLX;;chr5:134369879..134369898,-!p2@PITX1!1.18!14.19!PITX1;;chr12:19556960..19556982,+!p10@AEBP2!1.18!14.19!AEBP2;;chr20:50418972..50419029,-!p1@SALL4!1.17!13.94!SALL4;;chr7:20826504..20826526,-!p1@SP8!1.17!13.81!SP8;;chr12:2986206..2986258,-!p2@FOXM1!1.15!79.44!FOXM1;;chr8:25902876..25902936,-!p1@EBF2!1.15!13.18!EBF2;;chr14:21562671..21562702,-!p8@ZNF219!1.14!12.80!ZNF219;;chr14:21994337..21994442,-!p1@SALL2!1.13!34.34!SALL2;;chr12:66218212..66218244,+!p5@HMGA2!1.13!18.37!HMGA2;;chr12:66218836..66218888,+!p1@HMGA2!1.12!113.40!HMGA2;;chrX:25034067..25034088,-!p1@ARX!1.12!12.16!ARX;;chr12:66218598..66218645,+!p2@HMGA2!1.10!53.34!HMGA2;;chr11:61520075..61520136,+!p1@C11orf9!1.10!24.58!C11orf9;;chr20:62680984..62680999,-!p1@SOX18!1.10!15.46!SOX18;;chr4:4861385..4861398,+!p1@MSX1!1.09!33.58!MSX1;;chr1:221052776..221052799,+!p1@HLX!1.09!20.65!HLX;;chr16:51185573..51185593,-!p3@SALL1!1.08!10.90!SALL1;;chrY:2803415..2803468,+!p1@ZFY!1.07!10.64!ZFY;;chr2:25475094..25475112,-!p3@DNMT3A!1.06!10.39!DNMT3A;;chr15:74833584..74833626,+!p1@ARID3B!1.05!24.20!ARID3B;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.26!KDM5D;;chr17:41739283..41739297,-!p1@MEOX1!1.04!10.01!MEOX1;;chr3:147111231..147111281,+!p3@ZIC1!1.04!9.88!ZIC1;;chr7:20826426..20826432,-!p2@SP8!1.04!9.88!SP8;;chr19:58545454..58545498,+!p1@ZSCAN1!1.03!9.63!ZSCAN1;;chr17:46622205..46622218,-!p3@HOXB2!1.02!11.02!HOXB2;;chr3:27761692..27761705,-!p4@EOMES!1.02!9.50!EOMES;;chr12:66357214..66357233,+!p13@HMGA2!1.02!9.50!HMGA2;;chr12:8186270..8186292,+!p3@FOXJ2!1.02!9.50!FOXJ2;;chr13:100623375..100623425,-!p1@ZIC5!1.02!9.38!ZIC5;;chr16:29818199..29818216,+!p11@MAZ!1.01!15.46!MAZ;;chr11:19263160..19263176,-!p1@E2F8!1.01!11.02!E2F8;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.01!9.12!SEBOX;;chr12:85673977..85674015,+!p1@ALX1!0.99!8.74!ALX1;;chr13:100634031..100634045,+!p1@ZIC2!0.99!8.74!ZIC2;;chr14:57272369..57272391,-!p2@OTX2!0.99!8.74!OTX2;;chrX:55620497..55620512,+!p@chrX:55620497..55620512,+!0.99!8.74!FOXR2;;chr20:32274179..32274213,-!p1@E2F1!0.98!57.77!E2F1;;chr12:66218152..66218174,+!p10@HMGA2!0.98!9.25!HMGA2;;chr9:127533582..127533615,-!p1@NR6A1!0.97!12.67!NR6A1;;chr17:45928521..45928539,-!p1@SP6!0.97!8.36!SP6;;chr19:46800289..46800327,+!p2@HIF3A!0.97!8.36!HIF3A;;chr1:247171347..247171366,-!p2@ZNF695!0.96!15.08!ZNF695;;chr19:22817119..22817145,+!p1@ZNF492!0.96!13.81!ZNF492;;chr16:51185363..51185381,-!p4@SALL1!0.96!8.11!SALL1;;chr20:50419055..50419066,-!p3@SALL4!0.96!8.11!SALL4;;chr8:93115584..93115642,-!p5@RUNX1T1!0.96!8.11!RUNX1T1;;chr20:6748325..6748352,+!p1@BMP2!0.95!11.66!BMP2;;chr4:109090075..109090095,-!p2@LEF1!0.95!7.86!LEF1;;chr1:165414325..165414369,-!p1@RXRG!0.94!7.73!RXRG;;chr12:2986275..2986363,-!p1@FOXM1!0.93!77.67!FOXM1;;chr5:176738887..176738934,-!p1@MXD3!0.93!52.71!MXD3;;chr20:45142154..45142227,-!p1@ZNF334!0.93!15.33!ZNF334;;chr12:66218573..66218596,+!p7@HMGA2!0.93!11.53!HMGA2;;chr3:40547564..40547616,+!p1@ZNF620!0.93!10.90!ZNF620;;chr9:129376201..129376225,+!p1@LMX1B!0.93!7.60!LMX1B;;chr9:129376233..129376251,+!p2@LMX1B!0.93!7.48!LMX1B;;chr12:66218420..66218439,+!p12@HMGA2!0.93!7.48!HMGA2;;chr3:147111198..147111225,+!p4@ZIC1!0.92!7.35!ZIC1;;chr19:48325184..48325211,+!p1@CRX!0.92!7.35!CRX;;chr10:114710098..114710130,+!p2@TCF7L2!0.91!55.37!TCF7L2;;chr20:42295713..42295738,+!p2@MYBL2!0.91!43.58!MYBL2;;chr13:100634004..100634025,+!p2@ZIC2!0.91!7.22!ZIC2;;chr14:23588816..23588836,-!p4@CEBPE!0.91!7.22!CEBPE;;chr1:221052994..221053008,+!p6@HLX!0.90!8.24!HLX;;chr10:8097295..8097320,+!p6@GATA3!0.90!6.97!GATA3;;chr12:3068634..3068656,+!p5@TEAD4!0.90!6.97!TEAD4;;chr5:50679228..50679288,+!p1@ISL1!0.90!6.97!ISL1;;chr1:221052700..221052730,+!p5@HLX!0.89!10.52!HLX;;chr17:38465441..38465481,+!p6@RARA!0.89!8.49!RARA;;chr3:193853927..193853944,+!p1@HES1!0.88!225.27!HES1;;chr16:29818160..29818188,+!p6@MAZ!0.88!32.18!MAZ;;chr5:124084493..124084524,-!p2@ZNF608!0.88!15.33!ZNF608;;chr19:926055..926068,+!p2@ARID3A!0.88!14.82!ARID3A;;chr19:926001..926046,+!p1@ARID3A!0.87!23.19!ARID3A;;chr7:156803329..156803362,-!p1@MNX1!0.87!6.46!MNX1;;chr12:6798056..6798102,-!p3@ZNF384!0.86!19.38!ZNF384;;chr8:86089417..86089440,+!p2@E2F5!0.86!12.92!E2F5;;chr7:64254834..64254854,+!p2@ZNF138!0.86!11.66!ZNF138;;chr12:24715376..24715432,-!p1@SOX5!0.86!7.98!SOX5;;chr12:7079780..7079791,-!p2@PHB2!0.85!33.45!PHB2;;chr1:221052840..221052875,+!p4@HLX!0.85!7.35!HLX;;chr17:46622229..46622257,-!p6@HOXB2!0.85!7.22!HOXB2;;chr20:42295745..42295765,+!p1@MYBL2!0.84!104.15!MYBL2;;chr20:50159198..50159299,-!p1@NFATC2!0.84!9.00!NFATC2;;chr1:33721900..33721921,+!p2@ZNF362!0.83!14.70!ZNF362;;chr16:54320158..54320200,-!p5@IRX3!0.83!8.62!IRX3;;chr12:66218443..66218461,+!p8@HMGA2!0.83!7.60!HMGA2;;chr10:114889045..114889074,+!p12@TCF7L2!0.83!5.70!TCF7L2;;chr1:24645832..24645853,+!p1@GRHL3!0.83!5.70!GRHL3;;chr19:12203100..12203132,+!p1@ZNF788!0.82!12.04!ZNF788;;chr12:66218003..66218018,+!p9@HMGA2!0.82!6.97!HMGA2;;chr3:27762020..27762023,-!p5@EOMES!0.82!5.57!EOMES;;chr10:70320074..70320106,+!p1@TET1!0.81!11.66!TET1;;chr1:151032922..151032951,+!p2@MLLT11!0.81!9.50!MLLT11;;chr1:247171316..247171336,-!p3@ZNF695!0.81!8.36!ZNF695;;chr14:24553835..24553850,-!p1@NRL!0.81!5.45!NRL;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.81!5.45!ZNF676;;chr9:126774018..126774055,+!p1@LHX2!0.81!5.45!LHX2;;chr19:21264991..21265026,+!p1@ZNF714!0.80!37.25!ZNF714;;chr7:19157043..19157088,-!p2@TWIST1!0.80!14.32!TWIST1;;chr3:44626446..44626477,+!p1@ZNF660!0.80!9.88!ZNF660;;chr12:3068501..3068515,+!p4@TEAD4!0.80!9.63!TEAD4;;chr18:42260840..42260860,+!p2@SETBP1!0.80!5.32!SETBP1;;chr15:66994561..66994597,+!p2@SMAD6!0.79!13.18!SMAD6;;chr19:58400344..58400364,-!p2@ZNF814!0.79!7.73!ZNF814;;chr1:164528687..164528711,+!p6@PBX1!0.79!6.08!PBX1;;chr10:135051353..135051367,+!p1@VENTX!0.79!5.19!VENTX;;chr12:56414851..56414871,+!p6@IKZF4!0.79!5.19!IKZF4;;chr13:100638100..100638115,+!p4@ZIC2!0.79!5.19!ZIC2;;chr8:80679993..80680011,-!p1@HEY1!0.78!7.48!HEY1;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.78!5.07!ZNF177;;chr1:165414227..165414242,-!p2@RXRG!0.78!5.07!RXRG;;chr1:221052669..221052678,+!p12@HLX!0.78!5.07!HLX;;chr15:90294523..90294532,-!p9@MESP1!0.78!5.07!MESP1;;chr19:24097706..24097731,+!p2@ZNF726!0.77!9.88!ZNF726;;chr19:22235279..22235301,+!p1@ZNF257!0.77!9.63!ZNF257;;chr17:59477197..59477212,+!p2@TBX2!0.77!8.74!TBX2;;chr15:90294062..90294079,-!p2@MESP1!0.77!4.94!MESP1;;chr9:20622444..20622468,-!p2@MLLT3!0.76!16.85!MLLT3;;chr10:44070016..44070069,-!p1@ZNF239!0.76!15.33!ZNF239;;chr12:66358080..66358094,+!p15@HMGA2!0.76!4.81!HMGA2;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.75!48.40!ZNF595;;chr12:19592405..19592492,+!p2@AEBP2!0.75!44.22!AEBP2;;chr20:306177..306211,+!p2@SOX12!0.75!35.10!SOX12;;chr17:41623692..41623715,-!p1@ETV4!0.75!21.41!ETV4;;chr5:138647473..138647476,+!p6@MATR3!0.74!12.16!MATR3;;chr17:38465413..38465438,+!p5@RARA!0.74!7.48!RARA;;chr12:50479109..50479146,+!p2@SMARCD1!0.73!82.86!SMARCD1;;chr15:66994663..66994680,+!p1@SMAD6!0.73!11.15!SMAD6;;chr19:23299814..23299844,+!p1@ZNF730!0.73!5.45!ZNF730;;chr19:53193731..53193767,-!p1@ZNF83!0.72!42.70!ZNF83;;chr9:20622478..20622525,-!p1@MLLT3!0.72!37.38!MLLT3;;chr19:23433144..23433204,-!p1@ZNF724P!0.72!21.03!ZNF724P;;chr2:121493425..121493474,+!p1@GLI2!0.72!10.14!GLI2;;chr9:20621927..20621996,-!p3@MLLT3!0.72!7.60!MLLT3;;chr15:74833547..74833567,+!p2@ARID3B!0.72!6.33!ARID3B;;chr5:153857819..153857824,-!p3@HAND1!0.72!4.31!HAND1;;chr5:172662230..172662241,-!p3@NKX2-5!0.72!4.31!NKX2-5;;chr22:42739839..42739867,-!p1@ENST00000515426!0.72!4.31!TCF20;;chr3:39196117..39196139,-!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|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 35: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCR-G1.CNhs11884.10798-110I6.hg38.nobarcode.ctss.bed.gz
|id=FF:10798-110I6
|id=FF:10798-110I6
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100306
|is_a=EFO:0002091;;FF:0000210;;FF:0100306
|is_obsolete=
|library_id=CNhs11884
|library_id_phase_based=2:CNhs11884
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10798
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10798
|name=teratocarcinoma cell line:NCR-G1
|name=teratocarcinoma cell line:NCR-G1
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 59:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11884,LSID830,release010,COMPLETED
|profile_hcage=CNhs11884,LSID830,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.0259038582604831,0,0,0,0,-0.062229378502137,0.0518077165209662,-0.00161566280250625,0.318201377509854,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394939850582235,0,0,0,0,0,0.559820353241732,0,0,0.268509781633432,0,0,0,0,0,0,0,0,0,0,0,0,0.137782674756692,0.13041677269469,0,0,0,0,0,0,0,0.59536094632798,0,0,0,0.0980886515842491,0,0.00403212395024832,0,0.325774789686405,0,0,0.383694046678579,0,0,0,0,0,0,0,0,0.0518077165209662,0,0,0,0,0.21311714614554,0,0,0,0.0106687890353666,0,0,0.0518077165209662,0,0,0,0.128471683965875,0.0259038582604831,0,0,0.0873825220921313,0.0593828521220988,0.0259038582604831,0,0,0.0980886515842491,0.147524446338181,0.216753112415661,0,0,0,0.13990914075318,0,0,0.0980886515842491,0,0,0,0,0,0,0,0,0,0,0.010184979150309,0.0518077165209662,0,0,0,-0.0634540010947704,0.0518077165209662,0,0.13990914075318,0,0.0259038582604831,0
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|rna_box=110
|rna_box=110
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 77:
|rna_weight_ug=102.78054
|rna_weight_ug=102.78054
|sample_age=embryo
|sample_age=embryo
|sample_category=cell lines
|sample_cell_catalog=jcrb1166
|sample_cell_catalog=jcrb1166
|sample_cell_line=NCR-G1
|sample_cell_line=NCR-G1
Line 69: Line 90:
|sample_ethnicity=unknown
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;7.02570412653823e-285!GO:0043226;organelle;8.31098025154791e-238!GO:0043229;intracellular organelle;6.46133745061169e-237!GO:0043227;membrane-bound organelle;2.67513372288455e-230!GO:0043231;intracellular membrane-bound organelle;3.32966598743643e-230!GO:0005737;cytoplasm;4.41134424381907e-168!GO:0044422;organelle part;3.81785605354944e-153!GO:0044446;intracellular organelle part;1.49925032342974e-151!GO:0005634;nucleus;1.09938247605838e-121!GO:0032991;macromolecular complex;1.84928278893811e-113!GO:0044444;cytoplasmic part;1.32894667863239e-111!GO:0044238;primary metabolic process;2.2049574471297e-108!GO:0044237;cellular metabolic process;7.41307585056667e-108!GO:0043170;macromolecule metabolic process;1.21240048846106e-106!GO:0030529;ribonucleoprotein complex;2.71100293623403e-94!GO:0044428;nuclear part;1.25781531333628e-85!GO:0003723;RNA binding;1.70372317996795e-79!GO:0043233;organelle lumen;1.99393886674162e-78!GO:0031974;membrane-enclosed lumen;1.99393886674162e-78!GO:0043283;biopolymer metabolic process;1.64289758934206e-70!GO:0005515;protein binding;1.22172079023706e-68!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.60093965184876e-64!GO:0005739;mitochondrion;3.56167441676438e-64!GO:0010467;gene expression;1.90733538982586e-63!GO:0043234;protein complex;2.59542278841236e-58!GO:0005840;ribosome;8.66884689564935e-57!GO:0006396;RNA processing;4.9341081239114e-56!GO:0016043;cellular component organization and biogenesis;1.350639282295e-53!GO:0031981;nuclear lumen;1.9388368995029e-51!GO:0006412;translation;4.02183428804407e-49!GO:0003735;structural constituent of ribosome;2.00668270842015e-48!GO:0043228;non-membrane-bound organelle;7.90018129906736e-48!GO:0043232;intracellular non-membrane-bound organelle;7.90018129906736e-48!GO:0003676;nucleic acid binding;5.49835067986414e-46!GO:0019538;protein metabolic process;5.10998220710347e-45!GO:0033279;ribosomal subunit;4.64816558974803e-44!GO:0016071;mRNA metabolic process;1.61981088770819e-43!GO:0044429;mitochondrial part;1.43593198426469e-42!GO:0006259;DNA metabolic process;3.30431921112785e-42!GO:0006996;organelle organization and biogenesis;4.01475831209099e-42!GO:0065003;macromolecular complex assembly;3.25978020301327e-41!GO:0008380;RNA splicing;1.84266168423916e-40!GO:0031090;organelle membrane;8.54583950857574e-40!GO:0009058;biosynthetic process;1.00638212072598e-39!GO:0044260;cellular macromolecule metabolic process;1.7695622359672e-39!GO:0044267;cellular protein metabolic process;2.1175646877608e-39!GO:0031967;organelle envelope;3.5038935328997e-39!GO:0033036;macromolecule localization;7.88967080957633e-39!GO:0031975;envelope;8.99810973719011e-39!GO:0015031;protein transport;1.04960988084178e-38!GO:0044249;cellular biosynthetic process;2.08673015328753e-38!GO:0022607;cellular component assembly;7.81029008754303e-38!GO:0009059;macromolecule biosynthetic process;1.33590913261556e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.41245184820573e-37!GO:0006397;mRNA processing;6.43483016429284e-37!GO:0046907;intracellular transport;3.3358488440551e-35!GO:0005829;cytosol;7.05410713378753e-35!GO:0016070;RNA metabolic process;1.07361001965479e-34!GO:0008104;protein localization;1.56194835929541e-34!GO:0007049;cell cycle;2.08723490967865e-34!GO:0045184;establishment of protein localization;1.13250275424558e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.93914412480443e-32!GO:0005654;nucleoplasm;1.09944057246305e-31!GO:0005681;spliceosome;5.43820732737978e-29!GO:0000166;nucleotide binding;8.74684648765436e-28!GO:0006886;intracellular protein transport;1.28652545995027e-27!GO:0019866;organelle inner membrane;1.60916854036562e-27!GO:0006974;response to DNA damage stimulus;1.23854693083474e-26!GO:0022402;cell cycle process;1.39217904071164e-26!GO:0000278;mitotic cell cycle;3.70860486386233e-26!GO:0005740;mitochondrial envelope;4.1838933044486e-26!GO:0044451;nucleoplasm part;9.66579205184983e-26!GO:0005694;chromosome;1.08383984395687e-25!GO:0044445;cytosolic part;2.21626554951422e-25!GO:0005743;mitochondrial inner membrane;7.25278878469503e-25!GO:0031966;mitochondrial membrane;1.97714279683783e-24!GO:0015935;small ribosomal subunit;7.07624940808003e-23!GO:0006119;oxidative phosphorylation;7.2658807480063e-23!GO:0006281;DNA repair;1.47946235768756e-22!GO:0051649;establishment of cellular localization;1.49169232443752e-22!GO:0015934;large ribosomal subunit;3.02868240102122e-22!GO:0044427;chromosomal part;4.68807696746495e-22!GO:0051641;cellular localization;7.05200306571449e-22!GO:0000087;M phase of mitotic cell cycle;1.47397664295839e-21!GO:0022618;protein-RNA complex assembly;2.71539672284835e-21!GO:0007067;mitosis;3.71799131543478e-21!GO:0022403;cell cycle phase;1.47419320380894e-20!GO:0044455;mitochondrial membrane part;1.51817854121719e-20!GO:0051301;cell division;3.36108108252328e-20!GO:0051276;chromosome organization and biogenesis;3.43489446184233e-20!GO:0016462;pyrophosphatase activity;5.3884305797332e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.0003255937329e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.52065375636858e-19!GO:0031980;mitochondrial lumen;1.72168713293925e-19!GO:0005759;mitochondrial matrix;1.72168713293925e-19!GO:0017111;nucleoside-triphosphatase activity;1.82221717703439e-19!GO:0032553;ribonucleotide binding;1.82221717703439e-19!GO:0032555;purine ribonucleotide binding;1.82221717703439e-19!GO:0005730;nucleolus;3.51981284189001e-19!GO:0016874;ligase activity;1.44951570534148e-18!GO:0017076;purine nucleotide binding;2.58827729499553e-18!GO:0000279;M phase;3.45512502981355e-18!GO:0006512;ubiquitin cycle;3.5780548161645e-18!GO:0009719;response to endogenous stimulus;1.02200321585714e-17!GO:0005524;ATP binding;1.02200321585714e-17!GO:0032559;adenyl ribonucleotide binding;2.0720472547096e-17!GO:0005746;mitochondrial respiratory chain;4.62745009756935e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.45790680611068e-17!GO:0006457;protein folding;7.08907376491815e-17!GO:0006260;DNA replication;8.19286596588093e-17!GO:0008135;translation factor activity, nucleic acid binding;8.62863227397115e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.04577623751796e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;1.07670639410068e-16!GO:0042254;ribosome biogenesis and assembly;1.53638613515534e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.04937763573684e-16!GO:0003954;NADH dehydrogenase activity;3.04937763573684e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.04937763573684e-16!GO:0030554;adenyl nucleotide binding;4.32531200076414e-16!GO:0006323;DNA packaging;5.04833594868762e-16!GO:0031965;nuclear membrane;6.12865837030464e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.22144978081991e-16!GO:0005761;mitochondrial ribosome;6.73791539939616e-16!GO:0000313;organellar ribosome;6.73791539939616e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;6.7967765662722e-16!GO:0000375;RNA splicing, via transesterification reactions;6.7967765662722e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.7967765662722e-16!GO:0012505;endomembrane system;1.53594462017255e-15!GO:0044265;cellular macromolecule catabolic process;1.7118931176075e-15!GO:0044453;nuclear membrane part;2.23192239915231e-15!GO:0048770;pigment granule;2.80774130486273e-15!GO:0042470;melanosome;2.80774130486273e-15!GO:0043412;biopolymer modification;3.87026446389397e-14!GO:0042775;organelle ATP synthesis coupled electron transport;3.87026446389397e-14!GO:0042773;ATP synthesis coupled electron transport;3.87026446389397e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.34197079164809e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;5.61977217207153e-14!GO:0030964;NADH dehydrogenase complex (quinone);5.99997705131412e-14!GO:0045271;respiratory chain complex I;5.99997705131412e-14!GO:0005747;mitochondrial respiratory chain complex I;5.99997705131412e-14!GO:0006511;ubiquitin-dependent protein catabolic process;6.48346289574834e-14!GO:0005643;nuclear pore;8.76688996431623e-14!GO:0019941;modification-dependent protein catabolic process;9.13168983295216e-14!GO:0043632;modification-dependent macromolecule catabolic process;9.13168983295216e-14!GO:0006605;protein targeting;1.08908442901261e-13!GO:0051186;cofactor metabolic process;1.35373809044141e-13!GO:0005635;nuclear envelope;1.39845659308292e-13!GO:0008134;transcription factor binding;1.69056694912124e-13!GO:0044257;cellular protein catabolic process;1.69056694912124e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.81422606127425e-13!GO:0003743;translation initiation factor activity;1.91189392504018e-13!GO:0006413;translational initiation;2.71695863022534e-13!GO:0016887;ATPase activity;3.61917269976473e-13!GO:0042623;ATPase activity, coupled;7.20187670313835e-13!GO:0016604;nuclear body;8.49365150398699e-13!GO:0015630;microtubule cytoskeleton;1.1564824499971e-12!GO:0065004;protein-DNA complex assembly;1.30145314519617e-12!GO:0006403;RNA localization;1.41712161042668e-12!GO:0050657;nucleic acid transport;2.02190254715179e-12!GO:0051236;establishment of RNA localization;2.02190254715179e-12!GO:0050658;RNA transport;2.02190254715179e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.46796921862773e-12!GO:0043285;biopolymer catabolic process;2.60479073795397e-12!GO:0006913;nucleocytoplasmic transport;3.11242460897776e-12!GO:0065002;intracellular protein transport across a membrane;3.81554435259708e-12!GO:0000785;chromatin;3.89215082637739e-12!GO:0009057;macromolecule catabolic process;4.7241767118203e-12!GO:0004386;helicase activity;4.95082896369362e-12!GO:0051726;regulation of cell cycle;5.36099949484618e-12!GO:0006464;protein modification process;6.1383115452157e-12!GO:0006333;chromatin assembly or disassembly;6.1795997747169e-12!GO:0000074;regulation of progression through cell cycle;6.65918384938677e-12!GO:0006732;coenzyme metabolic process;9.90562197091417e-12!GO:0051169;nuclear transport;1.01449869135306e-11!GO:0006461;protein complex assembly;1.01607437500538e-11!GO:0048193;Golgi vesicle transport;1.43842290516175e-11!GO:0006364;rRNA processing;1.86421451449893e-11!GO:0046930;pore complex;2.84424832294825e-11!GO:0051082;unfolded protein binding;2.9504022003521e-11!GO:0050794;regulation of cellular process;5.43996615593066e-11!GO:0006446;regulation of translational initiation;6.47798152032102e-11!GO:0016072;rRNA metabolic process;7.07021078069738e-11!GO:0006399;tRNA metabolic process;9.18264081905215e-11!GO:0005794;Golgi apparatus;1.04616513983337e-10!GO:0019222;regulation of metabolic process;1.10245215170976e-10!GO:0016607;nuclear speck;1.10727153637104e-10!GO:0043687;post-translational protein modification;1.16345528207372e-10!GO:0044248;cellular catabolic process;1.49738377520877e-10!GO:0030163;protein catabolic process;1.84556230044104e-10!GO:0008565;protein transporter activity;2.11034199587138e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.11779228419478e-10!GO:0008026;ATP-dependent helicase activity;2.34446388726121e-10!GO:0051028;mRNA transport;2.4993084315159e-10!GO:0000775;chromosome, pericentric region;6.43424717176323e-10!GO:0016568;chromatin modification;9.72227325516326e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.13223874616429e-09!GO:0044432;endoplasmic reticulum part;1.34848259940375e-09!GO:0005783;endoplasmic reticulum;1.44134624132147e-09!GO:0006334;nucleosome assembly;1.58588917100922e-09!GO:0006261;DNA-dependent DNA replication;1.75963918135308e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.88058641287212e-09!GO:0003697;single-stranded DNA binding;2.2420176870214e-09!GO:0031497;chromatin assembly;2.29464790276302e-09!GO:0016740;transferase activity;2.55701253472189e-09!GO:0006163;purine nucleotide metabolic process;3.29966802482567e-09!GO:0009259;ribonucleotide metabolic process;4.11956182731096e-09!GO:0043566;structure-specific DNA binding;4.33004126313437e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.68613651614168e-09!GO:0008639;small protein conjugating enzyme activity;4.930901540274e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.4047200451279e-09!GO:0004812;aminoacyl-tRNA ligase activity;5.4047200451279e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.4047200451279e-09!GO:0016192;vesicle-mediated transport;5.655041999232e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.13189676792395e-09!GO:0004842;ubiquitin-protein ligase activity;1.24724071780351e-08!GO:0006350;transcription;1.30848540539543e-08!GO:0043038;amino acid activation;1.49001040600831e-08!GO:0006418;tRNA aminoacylation for protein translation;1.49001040600831e-08!GO:0043039;tRNA aminoacylation;1.49001040600831e-08!GO:0006164;purine nucleotide biosynthetic process;1.51376075942746e-08!GO:0005793;ER-Golgi intermediate compartment;1.6268776789894e-08!GO:0005819;spindle;1.66049109345903e-08!GO:0009150;purine ribonucleotide metabolic process;2.03323603999268e-08!GO:0031323;regulation of cellular metabolic process;2.15948972777269e-08!GO:0017038;protein import;2.29206528944863e-08!GO:0019787;small conjugating protein ligase activity;2.53259744394381e-08!GO:0015986;ATP synthesis coupled proton transport;3.69316664690753e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.69316664690753e-08!GO:0005667;transcription factor complex;3.93808530403833e-08!GO:0006366;transcription from RNA polymerase II promoter;5.28895098001582e-08!GO:0043623;cellular protein complex assembly;5.37487761649976e-08!GO:0009060;aerobic respiration;6.50536985778465e-08!GO:0009260;ribonucleotide biosynthetic process;7.08069203478025e-08!GO:0000245;spliceosome assembly;9.55439239969574e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.55441695547691e-08!GO:0045333;cellular respiration;1.05570431908912e-07!GO:0008094;DNA-dependent ATPase activity;1.44876201460604e-07!GO:0019829;cation-transporting ATPase activity;1.46052857257562e-07!GO:0051188;cofactor biosynthetic process;1.49848193291807e-07!GO:0003712;transcription cofactor activity;1.51345673325607e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.06215340567186e-07!GO:0009055;electron carrier activity;2.13164706851468e-07!GO:0032446;protein modification by small protein conjugation;2.58872223723814e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.80080353141783e-07!GO:0010468;regulation of gene expression;3.13933687266805e-07!GO:0007051;spindle organization and biogenesis;3.49691362542442e-07!GO:0009141;nucleoside triphosphate metabolic process;3.64405440695057e-07!GO:0050789;regulation of biological process;3.85946199385032e-07!GO:0016881;acid-amino acid ligase activity;4.31517449681808e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.31517449681808e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.31517449681808e-07!GO:0016779;nucleotidyltransferase activity;4.79374523772836e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.03076628392025e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.03076628392025e-07!GO:0046034;ATP metabolic process;5.81472719573611e-07!GO:0016567;protein ubiquitination;6.24523836677795e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.34438612486546e-07!GO:0006754;ATP biosynthetic process;6.39710873443147e-07!GO:0006753;nucleoside phosphate metabolic process;6.39710873443147e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.57581902562054e-07!GO:0051329;interphase of mitotic cell cycle;6.73226019585502e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.91489809983555e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.91489809983555e-07!GO:0006752;group transfer coenzyme metabolic process;8.49803938780245e-07!GO:0005789;endoplasmic reticulum membrane;1.00994164582678e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.02582374900694e-06!GO:0032774;RNA biosynthetic process;1.05874732936017e-06!GO:0005813;centrosome;1.17488137313434e-06!GO:0006099;tricarboxylic acid cycle;1.19212663375164e-06!GO:0046356;acetyl-CoA catabolic process;1.19212663375164e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.24580713223098e-06!GO:0003677;DNA binding;1.25466933945414e-06!GO:0006793;phosphorus metabolic process;1.27155173114785e-06!GO:0006796;phosphate metabolic process;1.27155173114785e-06!GO:0045259;proton-transporting ATP synthase complex;1.28986926093391e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.39822515808715e-06!GO:0006351;transcription, DNA-dependent;1.41717045480432e-06!GO:0048475;coated membrane;1.54175046500919e-06!GO:0030117;membrane coat;1.54175046500919e-06!GO:0005657;replication fork;1.64823980859131e-06!GO:0003899;DNA-directed RNA polymerase activity;1.82451761419889e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.82531772555162e-06!GO:0009108;coenzyme biosynthetic process;1.98520158915291e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.10186850360642e-06!GO:0006084;acetyl-CoA metabolic process;2.36359449308174e-06!GO:0016853;isomerase activity;2.37128820425542e-06!GO:0007010;cytoskeleton organization and biogenesis;2.63798690690053e-06!GO:0005815;microtubule organizing center;3.10007152781766e-06!GO:0051170;nuclear import;4.45268444670138e-06!GO:0016310;phosphorylation;4.59243784948691e-06!GO:0005762;mitochondrial large ribosomal subunit;4.65503212860123e-06!GO:0000315;organellar large ribosomal subunit;4.65503212860123e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.73728830116838e-06!GO:0000075;cell cycle checkpoint;4.76524766151519e-06!GO:0051168;nuclear export;5.28246680216937e-06!GO:0005874;microtubule;5.2941065346868e-06!GO:0007005;mitochondrion organization and biogenesis;5.69783121770826e-06!GO:0031324;negative regulation of cellular metabolic process;6.11229520665257e-06!GO:0051325;interphase;6.12601103731289e-06!GO:0000151;ubiquitin ligase complex;6.57141687015215e-06!GO:0006606;protein import into nucleus;7.05060930659408e-06!GO:0016363;nuclear matrix;9.27580421012598e-06!GO:0009056;catabolic process;9.66693983551442e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.00491537534508e-05!GO:0003724;RNA helicase activity;1.07358751969254e-05!GO:0009117;nucleotide metabolic process;1.152031137013e-05!GO:0030120;vesicle coat;1.31227095513083e-05!GO:0030662;coated vesicle membrane;1.31227095513083e-05!GO:0045449;regulation of transcription;1.35583804532055e-05!GO:0012501;programmed cell death;1.38841030698596e-05!GO:0006613;cotranslational protein targeting to membrane;1.55427414835473e-05!GO:0008654;phospholipid biosynthetic process;1.73488480655747e-05!GO:0006915;apoptosis;1.79873148089586e-05!GO:0000786;nucleosome;2.08102836392329e-05!GO:0009109;coenzyme catabolic process;2.29154672204909e-05!GO:0009892;negative regulation of metabolic process;2.36002062377356e-05!GO:0003924;GTPase activity;2.458888709746e-05!GO:0000314;organellar small ribosomal subunit;2.53142950259891e-05!GO:0005763;mitochondrial small ribosomal subunit;2.53142950259891e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;3.39140064998398e-05!GO:0048523;negative regulation of cellular process;3.48776807467655e-05!GO:0051246;regulation of protein metabolic process;3.51330071876041e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.77279204734773e-05!GO:0006302;double-strand break repair;4.00666364992197e-05!GO:0007017;microtubule-based process;4.03767562038073e-05!GO:0003684;damaged DNA binding;4.18591386832903e-05!GO:0000776;kinetochore;5.20945574170629e-05!GO:0051427;hormone receptor binding;5.35198118270571e-05!GO:0016859;cis-trans isomerase activity;5.61572793170043e-05!GO:0031252;leading edge;5.69241003001092e-05!GO:0045786;negative regulation of progression through cell cycle;6.00020296666686e-05!GO:0016564;transcription repressor activity;6.00197427382003e-05!GO:0044431;Golgi apparatus part;6.1339827240398e-05!GO:0005525;GTP binding;7.93762893378621e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.54678897538509e-05!GO:0051187;cofactor catabolic process;9.62182702176526e-05!GO:0007059;chromosome segregation;9.62182702176526e-05!GO:0006355;regulation of transcription, DNA-dependent;0.000101420546431996!GO:0005798;Golgi-associated vesicle;0.00011300958006578!GO:0035257;nuclear hormone receptor binding;0.000117379768903453!GO:0003690;double-stranded DNA binding;0.0001181618757231!GO:0006338;chromatin remodeling;0.0001181618757231!GO:0016481;negative regulation of transcription;0.000126096812754628!GO:0015980;energy derivation by oxidation of organic compounds;0.000140876403695708!GO:0003682;chromatin binding;0.000169211218264656!GO:0006402;mRNA catabolic process;0.000171718960270402!GO:0008219;cell death;0.00018656361042296!GO:0016265;death;0.00018656361042296!GO:0043021;ribonucleoprotein binding;0.000193088840023958!GO:0000059;protein import into nucleus, docking;0.000193088840023958!GO:0003678;DNA helicase activity;0.000194800319777768!GO:0005768;endosome;0.000199365324068101!GO:0016563;transcription activator activity;0.000208451237876695!GO:0008186;RNA-dependent ATPase activity;0.000211984166975429!GO:0005839;proteasome core complex (sensu Eukaryota);0.000221572967911072!GO:0031988;membrane-bound vesicle;0.000243861737754595!GO:0006310;DNA recombination;0.000251376278952413!GO:0006383;transcription from RNA polymerase III promoter;0.000252352629227004!GO:0016741;transferase activity, transferring one-carbon groups;0.000307329691227037!GO:0003729;mRNA binding;0.000321171453527666!GO:0005048;signal sequence binding;0.000334046048644514!GO:0008168;methyltransferase activity;0.000335123012968636!GO:0008250;oligosaccharyl transferase complex;0.00034569293280866!GO:0030867;rough endoplasmic reticulum membrane;0.000352172768814567!GO:0016023;cytoplasmic membrane-bound vesicle;0.000355063162521084!GO:0005788;endoplasmic reticulum lumen;0.000358182261859627!GO:0003714;transcription corepressor activity;0.000360620368678548!GO:0005770;late endosome;0.000368770900462593!GO:0007052;mitotic spindle organization and biogenesis;0.000375010130670144!GO:0004576;oligosaccharyl transferase activity;0.000409849460421604!GO:0006414;translational elongation;0.000425855399963525!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000428122717951984!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000433958677736288!GO:0045454;cell redox homeostasis;0.000458779660044519!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000466658789275949!GO:0032508;DNA duplex unwinding;0.000467485163188403!GO:0032392;DNA geometric change;0.000467485163188403!GO:0000792;heterochromatin;0.000471299928315474!GO:0048519;negative regulation of biological process;0.000514056058789522!GO:0051052;regulation of DNA metabolic process;0.000540320087023154!GO:0031982;vesicle;0.000550423117254385!GO:0019843;rRNA binding;0.000597239262720242!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000603070884757654!GO:0004004;ATP-dependent RNA helicase activity;0.000614327285843657!GO:0044452;nucleolar part;0.000623747509750976!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000624654054456978!GO:0043681;protein import into mitochondrion;0.000629712768720097!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000635844130331743!GO:0016126;sterol biosynthetic process;0.000657631659310993!GO:0004298;threonine endopeptidase activity;0.000673174012476784!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000739638811855926!GO:0007093;mitotic cell cycle checkpoint;0.000743323832807327!GO:0005637;nuclear inner membrane;0.000758579423089243!GO:0018196;peptidyl-asparagine modification;0.000777104051411515!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000777104051411515!GO:0006268;DNA unwinding during replication;0.000781268989766526!GO:0030880;RNA polymerase complex;0.000781458421599103!GO:0065007;biological regulation;0.000786520836931561!GO:0051920;peroxiredoxin activity;0.000828202901728773!GO:0051087;chaperone binding;0.000849866868035545!GO:0006405;RNA export from nucleus;0.000852497806346921!GO:0048471;perinuclear region of cytoplasm;0.000869271431792105!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000871506035790182!GO:0042802;identical protein binding;0.000886109793168882!GO:0005684;U2-dependent spliceosome;0.000914542550570687!GO:0046474;glycerophospholipid biosynthetic process;0.000921444277260682!GO:0006352;transcription initiation;0.00092366256450876!GO:0015631;tubulin binding;0.00103779987885003!GO:0000228;nuclear chromosome;0.00105127367973469!GO:0031410;cytoplasmic vesicle;0.00108054891658767!GO:0043284;biopolymer biosynthetic process;0.00112353178692529!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116996202062219!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116996202062219!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116996202062219!GO:0007088;regulation of mitosis;0.00119312910595287!GO:0032561;guanyl ribonucleotide binding;0.00119312910595287!GO:0019001;guanyl nucleotide binding;0.00119312910595287!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00119352741589678!GO:0006612;protein targeting to membrane;0.00122893201787293!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00131482849565295!GO:0006401;RNA catabolic process;0.00132323112183154!GO:0008033;tRNA processing;0.00132969949519783!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00133543274605911!GO:0003713;transcription coactivator activity;0.00142988523405459!GO:0005885;Arp2/3 protein complex;0.00145808773724419!GO:0004674;protein serine/threonine kinase activity;0.00156715745346576!GO:0009165;nucleotide biosynthetic process;0.00157242226608238!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0016255854002873!GO:0000428;DNA-directed RNA polymerase complex;0.0016255854002873!GO:0048500;signal recognition particle;0.00164365636543153!GO:0006626;protein targeting to mitochondrion;0.00166890601255586!GO:0048487;beta-tubulin binding;0.00182110645511291!GO:0000139;Golgi membrane;0.00182681224932097!GO:0043414;biopolymer methylation;0.0018484931329987!GO:0046489;phosphoinositide biosynthetic process;0.00189330749383039!GO:0008139;nuclear localization sequence binding;0.00208676106107512!GO:0006839;mitochondrial transport;0.00210142809557703!GO:0043069;negative regulation of programmed cell death;0.00228855759155554!GO:0006891;intra-Golgi vesicle-mediated transport;0.0023957960123478!GO:0030118;clathrin coat;0.00240068972255098!GO:0006289;nucleotide-excision repair;0.00244387123065521!GO:0006695;cholesterol biosynthetic process;0.002472050284455!GO:0043066;negative regulation of apoptosis;0.00252934522867435!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00254477811514458!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00254477811514458!GO:0045892;negative regulation of transcription, DNA-dependent;0.00261606201433775!GO:0000082;G1/S transition of mitotic cell cycle;0.00272380287571945!GO:0016787;hydrolase activity;0.00280990824397251!GO:0004527;exonuclease activity;0.00282260027049301!GO:0032259;methylation;0.00294369586189498!GO:0031124;mRNA 3'-end processing;0.00317444482176723!GO:0007006;mitochondrial membrane organization and biogenesis;0.0032532565704565!GO:0044440;endosomal part;0.0032536526612974!GO:0010008;endosome membrane;0.0032536526612974!GO:0006275;regulation of DNA replication;0.00326044619414953!GO:0000922;spindle pole;0.00328891243344215!GO:0005769;early endosome;0.00328891243344215!GO:0005876;spindle microtubule;0.00334547945535621!GO:0030036;actin cytoskeleton organization and biogenesis;0.00345609443333495!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00358637445875654!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0036223590154128!GO:0006284;base-excision repair;0.00362509193844608!GO:0008312;7S RNA binding;0.00365552764478198!GO:0000725;recombinational repair;0.00377927499612038!GO:0000724;double-strand break repair via homologous recombination;0.00377927499612038!GO:0033116;ER-Golgi intermediate compartment membrane;0.00392714210342498!GO:0016272;prefoldin complex;0.00404402494625143!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00419155454278165!GO:0045047;protein targeting to ER;0.00419155454278165!GO:0043624;cellular protein complex disassembly;0.00419789773895498!GO:0008022;protein C-terminus binding;0.0041998954868685!GO:0006611;protein export from nucleus;0.00445142619333907!GO:0046467;membrane lipid biosynthetic process;0.00457689019072107!GO:0022890;inorganic cation transmembrane transporter activity;0.00464476195777452!GO:0006270;DNA replication initiation;0.00490912083748992!GO:0005791;rough endoplasmic reticulum;0.00496581033156921!GO:0008180;signalosome;0.00496898769045832!GO:0006730;one-carbon compound metabolic process;0.00507421744028596!GO:0006595;polyamine metabolic process;0.00529912755133233!GO:0005905;coated pit;0.00534354920567679!GO:0007264;small GTPase mediated signal transduction;0.00574685270042607!GO:0043596;nuclear replication fork;0.0057983764508038!GO:0005869;dynactin complex;0.00583808885589525!GO:0001558;regulation of cell growth;0.00589735515498765!GO:0000049;tRNA binding;0.00592505488603327!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00597962784732134!GO:0015992;proton transport;0.00598996059828817!GO:0019899;enzyme binding;0.00599623113519594!GO:0008361;regulation of cell size;0.00624563191167909!GO:0006818;hydrogen transport;0.00631141547878487!GO:0030663;COPI coated vesicle membrane;0.00631141547878487!GO:0030126;COPI vesicle coat;0.00631141547878487!GO:0016251;general RNA polymerase II transcription factor activity;0.00632639610439282!GO:0044454;nuclear chromosome part;0.00658804119939867!GO:0004003;ATP-dependent DNA helicase activity;0.00662811634027803!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00669425638628509!GO:0040029;regulation of gene expression, epigenetic;0.00707385686420878!GO:0006378;mRNA polyadenylation;0.00744358306849473!GO:0031570;DNA integrity checkpoint;0.00745699208738188!GO:0042393;histone binding;0.00750657228769918!GO:0051252;regulation of RNA metabolic process;0.00759783115954521!GO:0032984;macromolecular complex disassembly;0.00767826482801857!GO:0003746;translation elongation factor activity;0.00786861517529579!GO:0006916;anti-apoptosis;0.00802741182296422!GO:0005832;chaperonin-containing T-complex;0.00829707813123189!GO:0043022;ribosome binding;0.00839847637012956!GO:0031123;RNA 3'-end processing;0.00839847637012956!GO:0051789;response to protein stimulus;0.0084039025545482!GO:0006986;response to unfolded protein;0.0084039025545482!GO:0016301;kinase activity;0.00856814423110832!GO:0030137;COPI-coated vesicle;0.00881777969078759!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00928777534516878!GO:0015399;primary active transmembrane transporter activity;0.00928777534516878!GO:0000339;RNA cap binding;0.0092955189787661!GO:0016049;cell growth;0.00932266624518962!GO:0030658;transport vesicle membrane;0.00932578564677615!GO:0042158;lipoprotein biosynthetic process;0.00945090661307783!GO:0008092;cytoskeletal protein binding;0.00985067701238244!GO:0043241;protein complex disassembly;0.00988553621635978!GO:0030029;actin filament-based process;0.00989119454272481!GO:0000209;protein polyubiquitination;0.00989119454272481!GO:0008270;zinc ion binding;0.00993123586967019!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0101026536922585!GO:0009112;nucleobase metabolic process;0.0102994783404046!GO:0000178;exosome (RNase complex);0.0105676380186964!GO:0005875;microtubule associated complex;0.0111056667882837!GO:0006497;protein amino acid lipidation;0.0112909569461221!GO:0042981;regulation of apoptosis;0.0118127622400122!GO:0044262;cellular carbohydrate metabolic process;0.0120601364105666!GO:0043601;nuclear replisome;0.0121973626986493!GO:0030894;replisome;0.0121973626986493!GO:0043488;regulation of mRNA stability;0.0123462056247561!GO:0043487;regulation of RNA stability;0.0123462056247561!GO:0030384;phosphoinositide metabolic process;0.0124078342346478!GO:0001726;ruffle;0.0124711223449288!GO:0003711;transcription elongation regulator activity;0.0125669602673201!GO:0006144;purine base metabolic process;0.0127207875443566!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0127207875443566!GO:0043067;regulation of programmed cell death;0.0127581039384058!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0128895847664742!GO:0017166;vinculin binding;0.0131994621178662!GO:0000790;nuclear chromatin;0.0133655319855271!GO:0016584;nucleosome positioning;0.0140180230528578!GO:0006541;glutamine metabolic process;0.0140180230528578!GO:0006740;NADPH regeneration;0.0145960782895776!GO:0006098;pentose-phosphate shunt;0.0145960782895776!GO:0008017;microtubule binding;0.0156852455382045!GO:0006506;GPI anchor biosynthetic process;0.0158650454669575!GO:0005669;transcription factor TFIID complex;0.0159316062639504!GO:0006007;glucose catabolic process;0.0162276123364437!GO:0042770;DNA damage response, signal transduction;0.0164235401927585!GO:0035258;steroid hormone receptor binding;0.0167983922370658!GO:0000819;sister chromatid segregation;0.0168445787189106!GO:0030119;AP-type membrane coat adaptor complex;0.0170594977208641!GO:0006650;glycerophospholipid metabolic process;0.0170805062774137!GO:0007021;tubulin folding;0.0171247812210871!GO:0006376;mRNA splice site selection;0.0172871318072015!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0172871318072015!GO:0030660;Golgi-associated vesicle membrane;0.0173427824470307!GO:0000070;mitotic sister chromatid segregation;0.0173717946998587!GO:0030134;ER to Golgi transport vesicle;0.0179795082879866!GO:0009116;nucleoside metabolic process;0.0180204398388313!GO:0006505;GPI anchor metabolic process;0.0180605062255731!GO:0009303;rRNA transcription;0.0187091092771481!GO:0030027;lamellipodium;0.0188653708458416!GO:0005758;mitochondrial intermembrane space;0.019648745159629!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0197193082051918!GO:0015002;heme-copper terminal oxidase activity;0.0197193082051918!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0197193082051918!GO:0004129;cytochrome-c oxidase activity;0.0197193082051918!GO:0031968;organelle outer membrane;0.0197704955386698!GO:0019747;regulation of isoprenoid metabolic process;0.0200420294889829!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.020133473277229!GO:0005741;mitochondrial outer membrane;0.0201464517170886!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0203006348844167!GO:0030521;androgen receptor signaling pathway;0.0204343198280394!GO:0030496;midbody;0.0205518555097185!GO:0030131;clathrin adaptor complex;0.0205518555097185!GO:0051053;negative regulation of DNA metabolic process;0.0207164433088702!GO:0007050;cell cycle arrest;0.0208798406192975!GO:0008276;protein methyltransferase activity;0.0210812041778947!GO:0008610;lipid biosynthetic process;0.021583779344872!GO:0001824;blastocyst development;0.0220673154488635!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0222240459251977!GO:0010257;NADH dehydrogenase complex assembly;0.0222240459251977!GO:0033108;mitochondrial respiratory chain complex assembly;0.0222240459251977!GO:0000077;DNA damage checkpoint;0.0228269166633818!GO:0000910;cytokinesis;0.0228678173380557!GO:0005850;eukaryotic translation initiation factor 2 complex;0.022876344118998!GO:0016491;oxidoreductase activity;0.0232586449962551!GO:0030133;transport vesicle;0.0233623128272769!GO:0006091;generation of precursor metabolites and energy;0.0238919947564437!GO:0004532;exoribonuclease activity;0.0251176263159597!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0251176263159597!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0252197288242957!GO:0000118;histone deacetylase complex;0.0256594157109891!GO:0046426;negative regulation of JAK-STAT cascade;0.0260033779742057!GO:0019867;outer membrane;0.0261777999846751!GO:0008320;protein transmembrane transporter activity;0.0263674926468244!GO:0030176;integral to endoplasmic reticulum membrane;0.0264409518693754!GO:0035267;NuA4 histone acetyltransferase complex;0.0268191124568624!GO:0022884;macromolecule transmembrane transporter activity;0.0268191124568624!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0268191124568624!GO:0030127;COPII vesicle coat;0.0268372767568058!GO:0012507;ER to Golgi transport vesicle membrane;0.0268372767568058!GO:0051287;NAD binding;0.0280122048926468!GO:0050750;low-density lipoprotein receptor binding;0.0280264956313074!GO:0004523;ribonuclease H activity;0.028165579449364!GO:0004722;protein serine/threonine phosphatase activity;0.0284498699732035!GO:0031371;ubiquitin conjugating enzyme complex;0.0284752259316585!GO:0001832;blastocyst growth;0.0284752259316585!GO:0043631;RNA polyadenylation;0.0284804996966529!GO:0005784;translocon complex;0.0297107463223245!GO:0032200;telomere organization and biogenesis;0.0297495887662368!GO:0000723;telomere maintenance;0.0297495887662368!GO:0006892;post-Golgi vesicle-mediated transport;0.0302517816622899!GO:0009451;RNA modification;0.030900390167822!GO:0005652;nuclear lamina;0.0309104867865923!GO:0042769;DNA damage response, detection of DNA damage;0.0309120526985899!GO:0008536;Ran GTPase binding;0.0314005196411195!GO:0005663;DNA replication factor C complex;0.0315302324018976!GO:0045045;secretory pathway;0.0315760319924829!GO:0006643;membrane lipid metabolic process;0.0318249340970993!GO:0005773;vacuole;0.0327760526398741!GO:0006520;amino acid metabolic process;0.0327833656682587!GO:0007346;regulation of progression through mitotic cell cycle;0.0329602313498831!GO:0008538;proteasome activator activity;0.0329602313498831!GO:0016407;acetyltransferase activity;0.0330749788818807!GO:0030041;actin filament polymerization;0.0330920789573798!GO:0005720;nuclear heterochromatin;0.0331343691698237!GO:0003756;protein disulfide isomerase activity;0.0331560793041204!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0331560793041204!GO:0000123;histone acetyltransferase complex;0.033181229524317!GO:0000793;condensed chromosome;0.033181229524317!GO:0045893;positive regulation of transcription, DNA-dependent;0.0341156105392541!GO:0043189;H4/H2A histone acetyltransferase complex;0.0341264276093224!GO:0008143;poly(A) binding;0.0342328438822888!GO:0008287;protein serine/threonine phosphatase complex;0.0349094175293676!GO:0031369;translation initiation factor binding;0.0362960932649289!GO:0031970;organelle envelope lumen;0.0363659008027568!GO:0030508;thiol-disulfide exchange intermediate activity;0.037455823292945!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0384055400476398!GO:0045792;negative regulation of cell size;0.0395131985052734!GO:0005844;polysome;0.0395624330115959!GO:0046966;thyroid hormone receptor binding;0.0397822542336001!GO:0000152;nuclear ubiquitin ligase complex;0.0398449666884247!GO:0046914;transition metal ion binding;0.0403841502671343!GO:0000096;sulfur amino acid metabolic process;0.0404389933485339!GO:0000726;non-recombinational repair;0.0408461599839156!GO:0031577;spindle checkpoint;0.04100369490597!GO:0051101;regulation of DNA binding;0.0413249197804865!GO:0040008;regulation of growth;0.041434879438821!GO:0016835;carbon-oxygen lyase activity;0.0417775917952317!GO:0031072;heat shock protein binding;0.041943673958736!GO:0006509;membrane protein ectodomain proteolysis;0.0424996703431974!GO:0033619;membrane protein proteolysis;0.0424996703431974!GO:0005881;cytoplasmic microtubule;0.0426651706627764!GO:0007030;Golgi organization and biogenesis;0.0435841839752707!GO:0031625;ubiquitin protein ligase binding;0.0436358342106199!GO:0030911;TPR domain binding;0.044492571724067!GO:0030145;manganese ion binding;0.0448845611442516!GO:0008154;actin polymerization and/or depolymerization;0.0456286957208717!GO:0008097;5S rRNA binding;0.0461678582025333!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0466239697147774!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0466239697147774!GO:0006607;NLS-bearing substrate import into nucleus;0.0471106207497575!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.047270288875314!GO:0045947;negative regulation of translational initiation;0.047270288875314!GO:0051539;4 iron, 4 sulfur cluster binding;0.0473575888539739!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0473575888539739!GO:0031902;late endosome membrane;0.0484063700319506!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0484243936230547!GO:0000781;chromosome, telomeric region;0.048547230231935!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0493956772822952!GO:0050811;GABA receptor binding;0.0495492497129183!GO:0035020;regulation of Rac protein signal transduction;0.0499526699480558!GO:0030308;negative regulation of cell growth;0.0499841297248589!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0499841297248589
|sample_id=10798
|sample_id=10798
|sample_note=
|sample_note=
Line 76: Line 98:
|sample_tissue=testis
|sample_tissue=testis
|top_motifs=RBPJ:2.24919222685;PITX1..3:2.16277998869;PBX1:2.13629247099;TBX4,5:2.03611925988;TOPORS:1.83875266435;VSX1,2:1.79536174453;ELK1,4_GABP{A,B1}:1.78676163572;PATZ1:1.74596628744;E2F1..5:1.69043463025;LEF1_TCF7_TCF7L1,2:1.57427748302;NFY{A,B,C}:1.45105701045;GFI1:1.42507972404;CDX1,2,4:1.39533050181;FOXP1:1.33556331664;FOX{I1,J2}:1.25696323926;TFDP1:1.24627225224;ONECUT1,2:1.09330001162;LHX3,4:1.02497745341;ZNF143:1.01388435016;PAX1,9:1.00060187043;T:0.967813038283;MAZ:0.957485991858;YY1:0.928771045597;ZNF384:0.896697672745;CRX:0.890296984302;POU3F1..4:0.890099087837;SOX{8,9,10}:0.842103394331;HOXA9_MEIS1:0.835591601566;PAX3,7:0.788333202351;GATA6:0.784308620604;TFAP2{A,C}:0.76943641935;FOXQ1:0.760084643414;STAT5{A,B}:0.755264771728;NKX2-3_NKX2-5:0.733021113524;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.724593755478;FOXD3:0.702142817445;MYB:0.663535867324;POU2F1..3:0.655451010757;BREu{core}:0.64611452156;RFX2..5_RFXANK_RFXAP:0.638099730983;XCPE1{core}:0.629169104383;PAX4:0.627563247486;NANOG{mouse}:0.626843285222;SP1:0.606769780521;ZIC1..3:0.596096656053;NANOG:0.553663381367;KLF4:0.552907702927;OCT4_SOX2{dimer}:0.549103016866;AIRE:0.547737565178;POU1F1:0.538533107856;NKX6-1,2:0.510000388403;RFX1:0.500825377244;IKZF2:0.479070157195;MZF1:0.466522333175;TEF:0.455706458183;ARID5B:0.432076973137;FOXL1:0.425952045005;TEAD1:0.416144812025;PRRX1,2:0.397672815047;RXR{A,B,G}:0.395367721133;PAX5:0.37344499402;ALX1:0.359095778842;HOX{A6,A7,B6,B7}:0.337720071994;FOXM1:0.336078611835;RORA:0.333083840662;HOX{A4,D4}:0.320580648079;GTF2A1,2:0.313290115779;EVI1:0.311664602766;HOX{A5,B5}:0.277050554852;MED-1{core}:0.251859519889;FOXN1:0.234324470209;PPARG:0.23364167848;UFEwm:0.227592561722;RREB1:0.21510063029;NRF1:0.193627614965;ESR1:0.181663351585;TFAP2B:0.155504664763;TFCP2:0.153180334058;HNF4A_NR2F1,2:0.135495522743;MEF2{A,B,C,D}:0.131840072135;SOX17:0.118635204247;GTF2I:0.106872450706;SNAI1..3:0.081368058117;ZBTB6:0.0653448148059;CREB1:0.0641729202334;GFI1B:0.0591715818889;HMX1:0.058651968814;ZNF148:0.0493880928588;TP53:0.037663930004;RXRA_VDR{dimer}:-0.0101007728457;ZNF423:-0.0113164817076;AHR_ARNT_ARNT2:-0.0119058634778;ZBTB16:-0.0160057983038;CUX2:-0.0165160235609;STAT1,3:-0.0270208277883;ATF6:-0.028740583409;HNF1A:-0.0298653858948;TBP:-0.0357000930992;PRDM1:-0.0430062933025;NKX3-2:-0.0524586675558;HBP1_HMGB_SSRP1_UBTF:-0.0571401168703;NKX2-1,4:-0.118547760402;ATF2:-0.127508410673;PAX8:-0.135749340503;GLI1..3:-0.138674713047;FOXA2:-0.144094197497;ELF1,2,4:-0.15359025995;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.164505176113;ESRRA:-0.165549724762;EP300:-0.18087829424;NR1H4:-0.193777418294;HIC1:-0.194728303263;NR3C1:-0.206091124914;MYBL2:-0.215259300403;DBP:-0.22939864921;EBF1:-0.243499003751;TFAP4:-0.245402627785;POU6F1:-0.254634312091;SPZ1:-0.255997305012;REST:-0.304602797545;EN1,2:-0.305209188635;TGIF1:-0.306698881025;ATF5_CREB3:-0.316158610654;ZFP161:-0.322770571803;SRF:-0.323619908566;bHLH_family:-0.352234447907;CDC5L:-0.354688474749;ADNP_IRX_SIX_ZHX:-0.361239144037;ZEB1:-0.367561304745;FOX{D1,D2}:-0.381149503167;EGR1..3:-0.387580326178;NKX3-1:-0.428347426716;NFKB1_REL_RELA:-0.439134727362;NFIX:-0.462647695037;IKZF1:-0.473497283771;NKX2-2,8:-0.473892925257;TLX1..3_NFIC{dimer}:-0.47554558907;ALX4:-0.478104077149;JUN:-0.483805221696;GATA4:-0.492887751943;SOX5:-0.496241439988;XBP1:-0.504778286018;FOSL2:-0.508394381209;SREBF1,2:-0.524072936615;ATF4:-0.527802814534;POU5F1:-0.52927021879;DMAP1_NCOR{1,2}_SMARC:-0.553174837068;SPIB:-0.558512726396;ZNF238:-0.573233829216;BACH2:-0.581313954652;PAX2:-0.586374558079;SPI1:-0.595403035839;MTE{core}:-0.596425779137;PDX1:-0.603785184515;HMGA1,2:-0.612387208211;SOX2:-0.627630810085;FOXP3:-0.642995868436;NFE2L2:-0.681968439886;GCM1,2:-0.686427172536;MYOD1:-0.724975041596;SMAD1..7,9:-0.725056481031;AR:-0.727315479819;MYFfamily:-0.734611546823;MTF1:-0.738268381212;RUNX1..3:-0.740423694822;NR5A1,2:-0.748842022532;FOX{F1,F2,J1}:-0.754215268547;LMO2:-0.75541398337;TAL1_TCF{3,4,12}:-0.755977589668;PAX6:-0.759061500612;HAND1,2:-0.771210650195;FOS_FOS{B,L1}_JUN{B,D}:-0.800782846215;NHLH1,2:-0.802484521404;NFE2:-0.814005480739;BPTF:-0.827178633664;FOXO1,3,4:-0.841221111479;CEBPA,B_DDIT3:-0.842943104124;ETS1,2:-0.922553321207;HLF:-0.944924594739;TLX2:-0.965842974219;NFIL3:-1.07468212878;STAT2,4,6:-1.26808520581;IRF7:-1.41740840403;HSF1,2:-1.48411554983;MAFB:-1.51851250496;NR6A1:-1.59598187738;NFATC1..3:-1.62083067125;IRF1,2:-1.68169693544;GZF1:-1.91159945558;NFE2L1:-1.92861066927;HES1:-2.04292694059;HIF1A:-2.4885139186
|top_motifs=RBPJ:2.24919222685;PITX1..3:2.16277998869;PBX1:2.13629247099;TBX4,5:2.03611925988;TOPORS:1.83875266435;VSX1,2:1.79536174453;ELK1,4_GABP{A,B1}:1.78676163572;PATZ1:1.74596628744;E2F1..5:1.69043463025;LEF1_TCF7_TCF7L1,2:1.57427748302;NFY{A,B,C}:1.45105701045;GFI1:1.42507972404;CDX1,2,4:1.39533050181;FOXP1:1.33556331664;FOX{I1,J2}:1.25696323926;TFDP1:1.24627225224;ONECUT1,2:1.09330001162;LHX3,4:1.02497745341;ZNF143:1.01388435016;PAX1,9:1.00060187043;T:0.967813038283;MAZ:0.957485991858;YY1:0.928771045597;ZNF384:0.896697672745;CRX:0.890296984302;POU3F1..4:0.890099087837;SOX{8,9,10}:0.842103394331;HOXA9_MEIS1:0.835591601566;PAX3,7:0.788333202351;GATA6:0.784308620604;TFAP2{A,C}:0.76943641935;FOXQ1:0.760084643414;STAT5{A,B}:0.755264771728;NKX2-3_NKX2-5:0.733021113524;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.724593755478;FOXD3:0.702142817445;MYB:0.663535867324;POU2F1..3:0.655451010757;BREu{core}:0.64611452156;RFX2..5_RFXANK_RFXAP:0.638099730983;XCPE1{core}:0.629169104383;PAX4:0.627563247486;NANOG{mouse}:0.626843285222;SP1:0.606769780521;ZIC1..3:0.596096656053;NANOG:0.553663381367;KLF4:0.552907702927;OCT4_SOX2{dimer}:0.549103016866;AIRE:0.547737565178;POU1F1:0.538533107856;NKX6-1,2:0.510000388403;RFX1:0.500825377244;IKZF2:0.479070157195;MZF1:0.466522333175;TEF:0.455706458183;ARID5B:0.432076973137;FOXL1:0.425952045005;TEAD1:0.416144812025;PRRX1,2:0.397672815047;RXR{A,B,G}:0.395367721133;PAX5:0.37344499402;ALX1:0.359095778842;HOX{A6,A7,B6,B7}:0.337720071994;FOXM1:0.336078611835;RORA:0.333083840662;HOX{A4,D4}:0.320580648079;GTF2A1,2:0.313290115779;EVI1:0.311664602766;HOX{A5,B5}:0.277050554852;MED-1{core}:0.251859519889;FOXN1:0.234324470209;PPARG:0.23364167848;UFEwm:0.227592561722;RREB1:0.21510063029;NRF1:0.193627614965;ESR1:0.181663351585;TFAP2B:0.155504664763;TFCP2:0.153180334058;HNF4A_NR2F1,2:0.135495522743;MEF2{A,B,C,D}:0.131840072135;SOX17:0.118635204247;GTF2I:0.106872450706;SNAI1..3:0.081368058117;ZBTB6:0.0653448148059;CREB1:0.0641729202334;GFI1B:0.0591715818889;HMX1:0.058651968814;ZNF148:0.0493880928588;TP53:0.037663930004;RXRA_VDR{dimer}:-0.0101007728457;ZNF423:-0.0113164817076;AHR_ARNT_ARNT2:-0.0119058634778;ZBTB16:-0.0160057983038;CUX2:-0.0165160235609;STAT1,3:-0.0270208277883;ATF6:-0.028740583409;HNF1A:-0.0298653858948;TBP:-0.0357000930992;PRDM1:-0.0430062933025;NKX3-2:-0.0524586675558;HBP1_HMGB_SSRP1_UBTF:-0.0571401168703;NKX2-1,4:-0.118547760402;ATF2:-0.127508410673;PAX8:-0.135749340503;GLI1..3:-0.138674713047;FOXA2:-0.144094197497;ELF1,2,4:-0.15359025995;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.164505176113;ESRRA:-0.165549724762;EP300:-0.18087829424;NR1H4:-0.193777418294;HIC1:-0.194728303263;NR3C1:-0.206091124914;MYBL2:-0.215259300403;DBP:-0.22939864921;EBF1:-0.243499003751;TFAP4:-0.245402627785;POU6F1:-0.254634312091;SPZ1:-0.255997305012;REST:-0.304602797545;EN1,2:-0.305209188635;TGIF1:-0.306698881025;ATF5_CREB3:-0.316158610654;ZFP161:-0.322770571803;SRF:-0.323619908566;bHLH_family:-0.352234447907;CDC5L:-0.354688474749;ADNP_IRX_SIX_ZHX:-0.361239144037;ZEB1:-0.367561304745;FOX{D1,D2}:-0.381149503167;EGR1..3:-0.387580326178;NKX3-1:-0.428347426716;NFKB1_REL_RELA:-0.439134727362;NFIX:-0.462647695037;IKZF1:-0.473497283771;NKX2-2,8:-0.473892925257;TLX1..3_NFIC{dimer}:-0.47554558907;ALX4:-0.478104077149;JUN:-0.483805221696;GATA4:-0.492887751943;SOX5:-0.496241439988;XBP1:-0.504778286018;FOSL2:-0.508394381209;SREBF1,2:-0.524072936615;ATF4:-0.527802814534;POU5F1:-0.52927021879;DMAP1_NCOR{1,2}_SMARC:-0.553174837068;SPIB:-0.558512726396;ZNF238:-0.573233829216;BACH2:-0.581313954652;PAX2:-0.586374558079;SPI1:-0.595403035839;MTE{core}:-0.596425779137;PDX1:-0.603785184515;HMGA1,2:-0.612387208211;SOX2:-0.627630810085;FOXP3:-0.642995868436;NFE2L2:-0.681968439886;GCM1,2:-0.686427172536;MYOD1:-0.724975041596;SMAD1..7,9:-0.725056481031;AR:-0.727315479819;MYFfamily:-0.734611546823;MTF1:-0.738268381212;RUNX1..3:-0.740423694822;NR5A1,2:-0.748842022532;FOX{F1,F2,J1}:-0.754215268547;LMO2:-0.75541398337;TAL1_TCF{3,4,12}:-0.755977589668;PAX6:-0.759061500612;HAND1,2:-0.771210650195;FOS_FOS{B,L1}_JUN{B,D}:-0.800782846215;NHLH1,2:-0.802484521404;NFE2:-0.814005480739;BPTF:-0.827178633664;FOXO1,3,4:-0.841221111479;CEBPA,B_DDIT3:-0.842943104124;ETS1,2:-0.922553321207;HLF:-0.944924594739;TLX2:-0.965842974219;NFIL3:-1.07468212878;STAT2,4,6:-1.26808520581;IRF7:-1.41740840403;HSF1,2:-1.48411554983;MAFB:-1.51851250496;NR6A1:-1.59598187738;NFATC1..3:-1.62083067125;IRF1,2:-1.68169693544;GZF1:-1.91159945558;NFE2L1:-1.92861066927;HES1:-2.04292694059;HIF1A:-2.4885139186
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10798-110I6;search_select_hide=table117:FF:10798-110I6
}}
}}

Latest revision as of 15:05, 3 June 2020

Name:teratocarcinoma cell line:NCR-G1
Species:Human (Homo sapiens)
Library ID:CNhs11884
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetestis
dev stageNA
sexmale
ageembryo
cell typegerm cell
cell lineNCR-G1
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004827
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11884 CAGE DRX008020 DRR008892
Accession ID Hg19

Library idBAMCTSS
CNhs11884 DRZ000317 DRZ001702
Accession ID Hg38

Library idBAMCTSS
CNhs11884 DRZ011667 DRZ013052
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.286
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.574
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0.834
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0239
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0255
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.2
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0303
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0552
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.582
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0543
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.026
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0525
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.615
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0518
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0518
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.14
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0131
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0518
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0518
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11884

Jaspar motifP-value
MA0002.28.0371e-5
MA0003.10.0603
MA0004.10.518
MA0006.10.366
MA0007.10.341
MA0009.10.286
MA0014.10.713
MA0017.10.106
MA0018.20.334
MA0019.10.435
MA0024.11.96866e-5
MA0025.10.777
MA0027.10.333
MA0028.15.01327e-5
MA0029.10.699
MA0030.10.278
MA0031.10.285
MA0035.20.0373
MA0038.12.49384e-4
MA0039.20.209
MA0040.10.669
MA0041.10.265
MA0042.10.637
MA0043.10.977
MA0046.10.219
MA0047.20.0807
MA0048.10.0293
MA0050.17.16955e-11
MA0051.12.23249e-8
MA0052.10.313
MA0055.10.0232
MA0057.10.256
MA0058.10.363
MA0059.10.172
MA0060.16.91175e-13
MA0061.10.00224
MA0062.23.77901e-4
MA0065.20.756
MA0066.10.472
MA0067.10.109
MA0068.13.93039e-7
MA0069.10.8
MA0070.10.0378
MA0071.10.633
MA0072.10.464
MA0073.10.731
MA0074.10.453
MA0076.14.57797e-6
MA0077.10.79
MA0078.10.148
MA0079.20.816
MA0080.21.50455e-11
MA0081.10.132
MA0083.10.487
MA0084.10.38
MA0087.10.638
MA0088.10.092
MA0090.10.999
MA0091.10.0172
MA0092.10.546
MA0093.10.565
MA0099.21.6098e-16
MA0100.10.476
MA0101.10.0569
MA0102.20.00289
MA0103.10.399
MA0104.20.364
MA0105.10.00465
MA0106.10.141
MA0107.10.0111
MA0108.20.666
MA0111.10.838
MA0112.21.56202e-5
MA0113.10.101
MA0114.10.688
MA0115.10.325
MA0116.10.0335
MA0117.10.263
MA0119.10.0671
MA0122.10.848
MA0124.10.811
MA0125.10.49
MA0131.10.281
MA0135.10.445
MA0136.11.44728e-7
MA0137.20.0443
MA0138.20.277
MA0139.10.399
MA0140.10.624
MA0141.10.146
MA0142.10.985
MA0143.10.721
MA0144.10.00421
MA0145.10.73
MA0146.10.786
MA0147.10.365
MA0148.10.0686
MA0149.10.259
MA0150.12.99277e-5
MA0152.10.395
MA0153.10.711
MA0154.10.0169
MA0155.10.888
MA0156.10.00363
MA0157.10.155
MA0159.19.85836e-4
MA0160.10.115
MA0162.10.949
MA0163.10.00202
MA0164.10.568
MA0258.10.0209
MA0259.10.365



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11884

Novel motifP-value
10.149
100.239
1000.359
1010.797
1020.424
1030.0245
1040.422
1050.273
1060.16
1070.952
1080.969
1090.0473
110.0893
1100.963
1110.00149
1120.0516
1130.0717
1140.0281
1150.41
1160.888
1170.752
1180.475
1190.215
120.929
1200.765
1210.681
1220.887
1230.966
1240.547
1250.995
1260.59
1270.0503
1280.744
1290.296
130.472
1300.0217
1310.486
1320.656
1330.172
1340.764
1355.69805e-5
1360.209
1370.059
1380.178
1390.00534
140.947
1400.108
1410.177
1420.435
1430.00606
1440.892
1450.748
1460.495
1470.802
1480.0113
1490.0327
150.164
1500.824
1510.0354
1520.663
1530.485
1540.807
1550.596
1560.685
1570.915
1580.168
1590.417
160.375
1600.481
1610.397
1620.754
1630.289
1640.375
1650.219
1660.613
1670.202
1680.027
1690.0279
170.219
180.141
190.545
20.342
200.491
210.932
220.362
230.00959
240.659
250.119
260.959
270.0928
280.575
290.393
30.243
300.854
310.672
320.13
330.94
340.643
350.341
360.962
370.916
380.535
390.551
40.971
400.259
410.162
420.547
430.163
440.855
450.698
460.206
470.763
480.72
490.232
50.13
500.766
510.529
520.4
530.987
540.489
550.0145
560.829
570.978
580.0907
590.134
60.96
600.065
610.533
620.0471
630.163
640.228
650.119
660.367
670.484
680.558
690.621
70.48
700.00264
710.158
720.165
730.43
740.183
750.76
760.958
770.585
780.746
790.341
80.242
800.0663
810.164
820.0614
830.0881
840.985
850.00348
860.166
870.178
880.762
890.00537
90.275
900.272
910.145
920.0444
930.664
940.122
950.977
960.102
970.864
980.29
990.698



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11884


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100306 (teratocarcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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