FF:10792-110H9: Difference between revisions

Latest revision as of 15:05, 3 June 2020

Name:	acute myeloid leukemia (FAB M2) cell line:Kasumi-6
Species:	Human (Homo sapiens)
Library ID:	CNhs13052
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	64
cell type	myeloid progenitor cell
cell line	Kasumi-6
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005413

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13052		CAGE		DRX007804		DRR008676

Accession ID Hg19

Library id		BAM		CTSS
CNhs13052		DRZ000101		DRZ001486

Accession ID Hg38

Library id		BAM		CTSS
CNhs13052		DRZ011451		DRZ012836

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.244
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.438
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0166
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.287
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.381
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0862
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0435
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0.0886
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.384
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.429
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.107
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.379
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.106
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.421
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13052

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00563
MA0003.1	MA0003.1	0.725
MA0004.1	MA0004.1	0.0574
MA0006.1	MA0006.1	0.248
MA0007.1	MA0007.1	0.969
MA0009.1	MA0009.1	0.0888
MA0014.1	MA0014.1	0.607
MA0017.1	MA0017.1	0.0225
MA0018.2	MA0018.2	4.60786e-4
MA0019.1	MA0019.1	0.0392
MA0024.1	MA0024.1	0.00141
MA0025.1	MA0025.1	0.154
MA0027.1	MA0027.1	0.00101
MA0028.1	MA0028.1	2.47552e-4
MA0029.1	MA0029.1	0.414
MA0030.1	MA0030.1	0.0694
MA0031.1	MA0031.1	0.623
MA0035.2	MA0035.2	0.0279
MA0038.1	MA0038.1	1.20242e-5
MA0039.2	MA0039.2	0.148
MA0040.1	MA0040.1	0.461
MA0041.1	MA0041.1	0.301
MA0042.1	MA0042.1	0.373
MA0043.1	MA0043.1	0.0984
MA0046.1	MA0046.1	0.192
MA0047.2	MA0047.2	0.208
MA0048.1	MA0048.1	0.387
MA0050.1	MA0050.1	0.0187
MA0051.1	MA0051.1	0.0967
MA0052.1	MA0052.1	2.3291e-4
MA0055.1	MA0055.1	0.191
MA0057.1	MA0057.1	0.612
MA0058.1	MA0058.1	0.0213
MA0059.1	MA0059.1	0.00444
MA0060.1	MA0060.1	0.169
MA0061.1	MA0061.1	0.288
MA0062.2	MA0062.2	1.86671e-8
MA0065.2	MA0065.2	0.0158
MA0066.1	MA0066.1	0.583
MA0067.1	MA0067.1	0.943
MA0068.1	MA0068.1	0.0584
MA0069.1	MA0069.1	0.476
MA0070.1	MA0070.1	0.883
MA0071.1	MA0071.1	0.111
MA0072.1	MA0072.1	0.64
MA0073.1	MA0073.1	0.718
MA0074.1	MA0074.1	0.879
MA0076.1	MA0076.1	2.7898e-5
MA0077.1	MA0077.1	0.382
MA0078.1	MA0078.1	0.4
MA0079.2	MA0079.2	0.211
MA0080.2	MA0080.2	2.10615e-13
MA0081.1	MA0081.1	0.00292
MA0083.1	MA0083.1	4.21553e-5
MA0084.1	MA0084.1	0.919
MA0087.1	MA0087.1	0.182
MA0088.1	MA0088.1	0.0376
MA0090.1	MA0090.1	3.68006e-5
MA0091.1	MA0091.1	0.456
MA0092.1	MA0092.1	0.984
MA0093.1	MA0093.1	0.0627
MA0099.2	MA0099.2	2.74275e-7
MA0100.1	MA0100.1	2.58654e-5
MA0101.1	MA0101.1	0.504
MA0102.2	MA0102.2	0.468
MA0103.1	MA0103.1	0.183
MA0104.2	MA0104.2	0.00103
MA0105.1	MA0105.1	7.71254e-4
MA0106.1	MA0106.1	0.973
MA0107.1	MA0107.1	0.0413
MA0108.2	MA0108.2	1.75524e-16
MA0111.1	MA0111.1	0.181
MA0112.2	MA0112.2	0.0653
MA0113.1	MA0113.1	0.574
MA0114.1	MA0114.1	0.051
MA0115.1	MA0115.1	0.219
MA0116.1	MA0116.1	1.14718e-4
MA0117.1	MA0117.1	0.856
MA0119.1	MA0119.1	0.387
MA0122.1	MA0122.1	0.622
MA0124.1	MA0124.1	0.562
MA0125.1	MA0125.1	0.669
MA0131.1	MA0131.1	0.278
MA0135.1	MA0135.1	0.18
MA0136.1	MA0136.1	7.11515e-21
MA0137.2	MA0137.2	0.942
MA0138.2	MA0138.2	0.493
MA0139.1	MA0139.1	0.325
MA0140.1	MA0140.1	0.00204
MA0141.1	MA0141.1	0.043
MA0142.1	MA0142.1	0.943
MA0143.1	MA0143.1	0.876
MA0144.1	MA0144.1	0.649
MA0145.1	MA0145.1	0.61
MA0146.1	MA0146.1	0.173
MA0147.1	MA0147.1	6.27488e-4
MA0148.1	MA0148.1	0.0876
MA0149.1	MA0149.1	0.182
MA0150.1	MA0150.1	0.598
MA0152.1	MA0152.1	0.365
MA0153.1	MA0153.1	0.0659
MA0154.1	MA0154.1	0.0643
MA0155.1	MA0155.1	0.95
MA0156.1	MA0156.1	1.75421e-15
MA0157.1	MA0157.1	0.976
MA0159.1	MA0159.1	0.354
MA0160.1	MA0160.1	0.0514
MA0162.1	MA0162.1	0.728
MA0163.1	MA0163.1	3.89635e-16
MA0164.1	MA0164.1	0.992
MA0258.1	MA0258.1	0.0514
MA0259.1	MA0259.1	0.0849

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13052

Novel motif	Logo	P-value
1	1	0.0362
10	10	0.00982
100	100	0.32
101	101	0.088
102	102	0.882
103	103	0.0678
104	104	0.663
105	105	0.559
106	106	0.871
107	107	0.405
108	108	0.439
109	109	0.0526
11	11	0.069
110	110	0.182
111	111	0.0226
112	112	0.21
113	113	0.688
114	114	0.0566
115	115	0.65
116	116	0.277
117	117	0.0103
118	118	0.0429
119	119	0.996
12	12	0.954
120	120	0.402
121	121	0.554
122	122	0.507
123	123	0.0619
124	124	0.045
125	125	0.0437
126	126	0.286
127	127	0.325
128	128	0.711
129	129	0.802
13	13	0.013
130	130	0.897
131	131	0.268
132	132	0.565
133	133	0.466
134	134	0.238
135	135	0.279
136	136	0.351
137	137	0.185
138	138	0.542
139	139	0.122
14	14	0.868
140	140	0.456
141	141	0.272
142	142	0.106
143	143	0.99
144	144	0.529
145	145	0.64
146	146	0.845
147	147	0.0511
148	148	0.159
149	149	0.237
15	15	0.131
150	150	0.795
151	151	0.746
152	152	0.279
153	153	0.859
154	154	0.916
155	155	0.00823
156	156	0.729
157	157	0.35
158	158	0.376
159	159	0.615
16	16	0.739
160	160	0.229
161	161	0.0178
162	162	0.726
163	163	0.856
164	164	0.094
165	165	0.663
166	166	0.959
167	167	0.0415
168	168	0.279
169	169	0.5
17	17	0.873
18	18	0.758
19	19	0.573
2	2	0.574
20	20	0.566
21	21	0.257
22	22	0.837
23	23	0.0798
24	24	0.199
25	25	0.162
26	26	0.0247
27	27	0.389
28	28	0.71
29	29	0.0311
3	3	0.0108
30	30	0.147
31	31	0.637
32	32	0.311
33	33	0.268
34	34	0.727
35	35	0.0903
36	36	0.0432
37	37	0.142
38	38	0.564
39	39	0.449
4	4	0.185
40	40	0.199
41	41	0.765
42	42	0.161
43	43	0.541
44	44	0.353
45	45	0.5
46	46	0.0677
47	47	0.0343
48	48	0.0796
49	49	0.224
5	5	0.976
50	50	0.81
51	51	0.748
52	52	0.277
53	53	0.404
54	54	0.668
55	55	0.719
56	56	0.9
57	57	0.154
58	58	0.146
59	59	0.748
6	6	0.359
60	60	0.889
61	61	0.0591
62	62	0.147
63	63	0.446
64	64	0.189
65	65	0.715
66	66	0.134
67	67	0.696
68	68	0.683
69	69	0.941
7	7	0.067
70	70	0.99
71	71	0.00648
72	72	0.731
73	73	0.501
74	74	0.251
75	75	0.00638
76	76	0.0887
77	77	0.881
78	78	0.0269
79	79	0.851
8	8	0.121
80	80	0.112
81	81	0.371
82	82	0.403
83	83	0.29
84	84	0.521
85	85	0.801
86	86	0.709
87	87	0.601
88	88	0.622
89	89	0.662
9	9	0.82
90	90	0.0376
91	91	0.371
92	92	0.995
93	93	0.673
94	94	0.522
95	95	0.0212
96	96	0.813
97	97	0.404
98	98	0.201
99	99	0.492

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13052

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005413
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000037,CL:0000566,CL:0000049,CL:0000837
+|accession_numbers=CAGE;DRX007804;DRR008676;DRZ000101;DRZ001486;DRZ011451;DRZ012836
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:1240,DOID:8692
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100737,FF:0101035,FF:0101883,FF:0100740
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:54694758..54694805,-!p1@NFE2!2.18!181.96!NFE2;;chr3:128212033..128212051,-!p1@GATA2!2.10!123.55!GATA2;;chr2:68592406..68592424,+!p1@PLEK!2.05!110.91!PLEK;;chr1:92949331..92949377,-!p2@GFI1!2.00!98.28!GFI1;;chr6:135502501..135502546,+!p1@MYB!1.96!107.55!MYB;;chr12:54694807..54694832,-!p3@NFE2!1.94!87.05!NFE2;;chr19:33793430..33793447,-!p1@CEBPA!1.90!316.46!CEBPA;;chr7:115670804..115670825,-!p1@TFEC!1.87!73.29!TFEC;;chr6:135502408..135502459,+!p2@MYB!1.81!74.13!MYB;;chr21:39870339..39870443,-!p1@ERG!1.81!63.18!ERG;;chr11:47400078..47400106,-!p1@SPI1!1.79!60.65!SPI1;;chr4:81118647..81118666,+!p1@PRDM8!1.72!67.11!PRDM8;;chr7:27192185..27192209,-!p1@HOXA3!1.69!48.02!HOXA3;;chr7:137620650..137620677,-!p3@CREB3L2!1.68!46.89!CREB3L2;;chr7:50344289..50344323,+!p1@IKZF1!1.62!41.00!IKZF1;;chr10:101292684..101292706,+!p1@NKX2-3!1.61!39.87!NKX2-3;;chr19:13213511..13213545,-!p2@LYL1!1.57!38.75!LYL1;;chr1:92951607..92951661,-!p1@GFI1!1.54!33.70!GFI1;;chr2:16080659..16080685,+!p1@MYCN!1.54!33.41!MYCN;;chr7:27205136..27205164,-!p1@HOXA9!1.54!33.41!HOXA9;;chr4:57522598..57522664,-!p3@HOPX!1.48!29.48!HOPX;;chr7:137620684..137620711,-!p4@CREB3L2!1.48!29.20!CREB3L2;;chr17:46667594..46667619,-!p1@HOXB3!1.44!26.39!HOXB3;;chr11:47399996..47400014,-!p4@SPI1!1.43!25.83!SPI1;;chr7:27196217..27196246,-!p2@HOXA7!1.42!25.27!HOXA7;;chr4:57522674..57522699,-!p5@HOPX!1.42!25.27!HOPX;;chr21:36421535..36421610,-!p2@RUNX1!1.40!83.96!RUNX1;;chrY:21906594..21906622,-!p1@KDM5D!1.38!23.03!KDM5D;;chr2:16082155..16082169,+!p3@MYCN!1.38!22.74!MYCN;;chr4:57522513..57522548,-!p4@HOPX!1.37!22.46!HOPX;;chr6:144385698..144385742,-!p2@PLAGL1!1.34!24.99!PLAGL1;;chr11:47399947..47399961,-!p3@SPI1!1.32!19.94!SPI1;;chr14:75988771..75988826,+!p1@BATF!1.31!25.55!BATF;;chr10:94449703..94449718,+!p1@HHEX!1.28!68.51!HHEX;;chr11:113930425..113930471,+!p1@ZBTB16!1.28!26.11!ZBTB16;;chr7:27205106..27205134,-!p2@HOXA9!1.28!18.25!HOXA9;;chr13:41593425..41593480,-!p1@ELF1!1.27!110.07!ELF1;;chr19:13213662..13213686,-!p1@LYL1!1.23!23.59!LYL1;;chr2:60780607..60780624,-!p2@BCL11A!1.22!47.17!BCL11A;;chr3:18486354..18486377,-!p2@SATB1!1.22!19.66!SATB1;;chr21:34442439..34442455,+!p1@OLIG1!1.21!15.16!OLIG1;;chr2:231090433..231090469,+!p1@SP140!1.19!14.32!SP140;;chr17:46667628..46667642,-!p2@HOXB3!1.18!14.04!HOXB3;;chr12:54778471..54778528,-!p1@ZNF385A!1.16!13.48!ZNF385A;;chr1:25256756..25256774,-!p1@RUNX3!1.15!24.71!RUNX3;;chr6:15401104..15401166,+!p5@JARID2!1.14!12.92!JARID2;;chr12:54691711..54691725,-!p7@NFE2!1.13!12.64!NFE2;;chr2:68592394..68592405,+!p2@PLEK!1.13!12.64!PLEK;;chr10:94449675..94449694,+!p2@HHEX!1.10!31.17!HHEX;;chr3:128206762..128206781,-!p2@GATA2!1.09!71.32!GATA2;;chr19:22235279..22235301,+!p1@ZNF257!1.09!21.62!ZNF257;;chr12:54694653..54694672,-!p2@NFE2!1.07!10.67!NFE2;;chr7:50343634..50343717,+!p2@IKZF1!1.07!10.67!IKZF1;;chr7:128577972..128578047,+!p1@IRF5!1.06!16.85!IRF5;;chr13:79177703..79177729,-!p2@POU4F1!1.06!10.39!POU4F1;;chr17:46655672..46655697,-!p3@HOXB4!1.06!10.39!HOXB4;;chr11:128563948..128564003,+!p1@FLI1!1.05!124.11!FLI1;;chr20:31350184..31350200,+!p1@DNMT3B!1.05!21.34!DNMT3B;;chr7:27213893..27213954,-!p1@HOXA10!1.03!9.83!HOXA10;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!1.02!20.78!SOHLH2;;chr6:126240463..126240489,+!p6@NCOA7!1.01!10.39!NCOA7;;chr7:50344251..50344288,+!p3@IKZF1!1.01!9.27!IKZF1;;chr2:60781201..60781258,-!p3@BCL11A!1.00!8.99!BCL11A;;chr19:22817119..22817145,+!p1@ZNF492!0.99!14.88!ZNF492;;chr20:50159198..50159299,-!p1@NFATC2!0.99!12.92!NFATC2;;chr2:102091566..102091581,-!p1@RFX8!0.99!8.70!RFX8;;chr3:63953435..63953499,+!p1@ATXN7!0.99!8.70!ATXN7;;chr2:145277640..145277771,-!p1@ZEB2!0.98!116.53!ZEB2;;chr19:11959532..11959593,+!p1@ZNF439!0.98!33.98!ZNF439;;chr3:141747459..141747475,-!p1@TFDP2!0.97!70.76!TFDP2;;chr19:20188776..20188826,+!p1@ZNF90!0.96!22.46!ZNF90;;chrX:66763856..66763896,+!p1@AR!0.96!11.79!AR;;chr11:47400062..47400077,-!p2@SPI1!0.96!8.14!SPI1;;chr2:214014959..214015006,-!p4@IKZF2!0.96!8.14!IKZF2;;chr1:2985760..2985774,+!p1@PRDM16!0.96!8.14!PRDM16;;chr6:135502472..135502489,+!p3@MYB!0.95!7.86!MYB;;chrX:66763815..66763854,+!p2@AR!0.93!10.11!AR;;chr1:92949505..92949543,-!p5@GFI1!0.93!7.58!GFI1;;chr21:36260980..36261011,-!p1@RUNX1!0.92!220.43!RUNX1;;chr19:12203100..12203132,+!p1@ZNF788!0.92!15.16!ZNF788;;chr12:11802547..11802560,+!p5@ETV6!0.92!10.39!ETV6;;chr10:31288398..31288455,-!p2@ZNF438!0.92!8.70!ZNF438;;chr22:29196547..29196563,-!p2@XBP1!0.91!273.22!XBP1;;chr11:130184470..130184533,-!p2@ZBTB44!0.90!19.66!ZBTB44;;chr11:47400032..47400043,-!p5@SPI1!0.90!7.02!SPI1;;chr12:56415246..56415286,+!p2@IKZF4!0.90!7.02!IKZF4;;chr2:60778035..60778060,-!p4@BCL11A!0.89!8.14!BCL11A;;chr6:135513595..135513617,+!p4@MYB!0.89!6.74!MYB;;chr12:54694738..54694749,-!p5@NFE2!0.89!6.74!NFE2;;chr17:40440481..40440550,+!p1@STAT5A!0.88!49.70!STAT5A;;chr17:46675420..46675465,-!p3@HOXB6!0.88!7.58!HOXB6;;chr8:128748308..128748324,+!p2@MYC!0.87!187.29!MYC;;chr6:15246200..15246214,+!p2@JARID2!0.86!18.25!JARID2;;chr4:57522166..57522260,-!p2@HOPX!0.86!7.30!HOPX;;chr7:50348268..50348366,+!p4@IKZF1!0.86!6.18!IKZF1;;chr10:101292731..101292741,+!p2@NKX2-3!0.86!6.18!NKX2-3;;chr11:6947720..6947812,+!p1@ZNF215!0.85!8.14!ZNF215;;chr2:66662249..66662267,+!p2@MEIS1!0.84!24.15!MEIS1;;chr19:24097706..24097731,+!p2@ZNF726!0.84!11.79!ZNF726;;chr19:47538560..47538591,+!p2@NPAS1!0.84!5.90!NPAS1;;chr2:100759037..100759058,-!p2@AFF3!0.84!5.90!AFF3;;chr2:231090471..231090504,+!p2@SP140!0.84!5.90!SP140;;chr1:153940354..153940395,+!p1@CREB3L4!0.82!24.15!CREB3L4;;chr2:121493425..121493474,+!p1@GLI2!0.82!12.92!GLI2;;chr9:135854091..135854159,+!p1@GFI1B!0.82!5.62!GFI1B;;chr11:113930401..113930422,+!p3@ZBTB16!0.82!5.62!ZBTB16;;chr11:47400045..47400060,-!p6@SPI1!0.82!5.62!SPI1;;chr1:92952473..92952489,-!p3@GFI1!0.82!5.62!GFI1;;chr22:24093267..24093327,-!p1@ZNF70!0.81!39.87!ZNF70;;chr19:24097675..24097699,+!p1@ZNF726!0.81!19.38!ZNF726;;chr2:43453734..43453751,-!p1@ZFP36L2!0.80!620.84!ZFP36L2;;chr19:22034809..22034878,-!p2@ZNF43!0.80!20.22!ZNF43;;chr10:48355030..48355090,+!p1@ZNF488!0.80!7.02!ZNF488;;chr11:32457075..32457095,-!p1@WT1!0.80!5.34!WT1;;chr11:47399920..47399931,-!p7@SPI1!0.80!5.34!SPI1;;chr22:50247528..50247568,+!p2@ZBED4!0.79!13.20!ZBED4;;chr3:44626446..44626477,+!p1@ZNF660!0.79!9.83!ZNF660;;chr5:76383070..76383117,-!p3@ZBED3!0.78!10.67!ZBED3;;chr6:45390269..45390298,+!p5@RUNX2!0.78!8.70!RUNX2;;chr2:16081912..16081931,+!p2@MYCN!0.78!5.05!MYCN;;chr19:13213555..13213568,-!p5@LYL1!0.78!5.05!LYL1;;chr6:20402102..20402152,+!p1@E2F3!0.77!21.62!E2F3;;chr19:20278012..20278034,+!p1@ZNF486!0.76!43.52!ZNF486;;chr16:68119324..68119364,+!p1@NFATC3!0.75!22.46!NFATC3;;chr5:76383017..76383068,-!p1@ZBED3!0.75!18.53!ZBED3;;chr17:42295777..42295816,-!p7@UBTF!0.74!5.62!UBTF;;chr10:45496320..45496336,+!p3@ZNF22!0.74!4.49!ZNF22;;chr14:74226961..74227020,-!p1@C14orf43!0.73!32.01!C14orf43;;chr2:60780753..60780800,-!p1@BCL11A!0.73!23.87!BCL11A;;chr19:20011744..20011770,+!p1@ZNF93!0.73!18.53!ZNF93;;chr19:37096139..37096170,-!p2@ZNF529!0.73!13.20!ZNF529;;chr11:113930291..113930339,+!p2@ZBTB16!0.73!7.58!ZBTB16;;chr6:21593973..21593988,+!p1@SOX4!0.72!174.09!SOX4;;chr19:23433144..23433204,-!p1@ZNF724P!0.72!21.34!ZNF724P;;chr19:23299814..23299844,+!p1@ZNF730!0.72!5.34!ZNF730;;chr17:46675558..46675577,-!p2@HOXB6!0.72!4.21!HOXB6;;chr2:100759010..100759035,-!p1@AFF3!0.72!4.21!AFF3;;chr2:185463521..185463557,+!p3@ZNF804A!0.72!4.21!ZNF804A;;chr21:36421518..36421532,-!p11@RUNX1!0.72!4.21!RUNX1;;chr11:113930477..113930488,+!p4@ZBTB16!0.72!4.21!ZBTB16;;chr13:79177674..79177701,-!p1@POU4F1!0.72!4.21!POU4F1;;chr19:20748574..20748599,-!p1@ZNF737!0.71!27.80!ZNF737;;chr8:145669791..145669834,-!p1@TONSL!0.71!12.92!TONSL;;chrX:101186981..101187030,-!p1@ZMAT1!0.70!14.60!ZMAT1;;chr19:11998584..11998649,+!p1@ZNF69!0.69!19.66!ZNF69;;chr9:117150254..117150271,-!p1@AKNA!0.69!11.79!AKNA;;chr8:60031619..60031676,-!p1@TOX!0.69!9.27!TOX;;chr17:46671108..46671147,-!p1@HOXB5!0.69!3.93!HOXB5;;chr2:231090344..231090361,-!p3@SP110!0.69!3.93!SP110;;chr4:57522701..57522712,-!p10@HOPX!0.69!3.93!HOPX;;chr12:56414851..56414871,+!p6@IKZF4!0.69!3.93!IKZF4;;chr21:34442540..34442560,+!p2@OLIG1!0.69!3.93!OLIG1;;chr5:138609782..138609826,+!p5@MATR3!0.68!28.08!MATR3;;chr18:22932080..22932170,-!p1@ZNF521!0.68!18.25!ZNF521;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.68!6.18!ZNF816;;chr10:45496346..45496409,+!p1@ZNF22!0.67!60.09!ZNF22;;chr14:65568389..65568408,-!p4@MAX!0.67!3.65!MAX;;chr6:27440529..27440553,-!p5@ZNF184!0.67!3.65!ZNF184;;chr18:53257027..53257052,-!p3@TCF4!0.66!16.29!TCF4;;chr7:64126535..64126559,+!p2@ZNF107!0.66!8.42!ZNF107;;chrX:84499081..84499115,+!p2@ZNF711!0.66!5.62!ZNF711;;chr5:176738887..176738934,-!p1@MXD3!0.65!26.96!MXD3;;chr19:22018966..22019001,-!p1@ZNF43!0.65!23.03!ZNF43;;chr11:47279504..47279563,+!p1@NR1H3!0.65!8.70!NR1H3;;chr1:226595648..226595659,-!p3@PARP1!0.65!6.18!PARP1;;chr17:79881332..79881348,-!p3@MAFG!0.65!5.34!MAFG;;chr17:46622229..46622257,-!p6@HOXB2!0.65!4.21!HOXB2;;chr19:20959098..20959117,+!p1@ZNF66P!0.64!16.01!ZNF66P;;chr22:29196492..29196503,-!p3@XBP1!0.64!5.62!XBP1;;chr2:214015343..214015366,-!p3@IKZF2!0.64!3.37!IKZF2;;chr6:28304275..28304282,-!p7@ZNF323!0.64!3.37!ZNF323;;chr19:21579908..21579949,+!p1@ZNF493!0.63!23.03!ZNF493;;chr15:57210961..57211012,+!p3@TCF12!0.63!12.07!TCF12;;chr10:44101902..44101932,+!p2@ZNF485!0.63!7.30!ZNF485;;chr17:41277372..41277418,-!p1@BRCA1!0.62!13.48!BRCA1;;chr2:66662281..66662308,+!p1@MEIS1!0.62!12.64!MEIS1;;chr19:23941680..23941704,-!p1@ZNF681!0.62!10.67!ZNF681;;chr15:56535468..56535521,-!p2@RFX7!0.62!6.46!RFX7;;chr19:37997812..37997866,+!p1@ZNF793!0.62!5.90!ZNF793;;chr19:12551785..12551823,-!p1@ZNF443!0.62!5.62!ZNF443;;chr17:46655704..46655718,-!p2@HOXB4!0.62!5.05!HOXB4;;chr14:74226833..74226845,-!p7@C14orf43!0.62!4.49!C14orf43;;chr4:331578..331615,+!p1@ZNF141!0.61!40.15!ZNF141;;chr17:61920280..61920343,-!p2@SMARCD2!0.61!35.66!SMARCD2;;chr14:45722287..45722308,-!p2@MIS18BP1!0.61!9.27!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+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=FF:0101035
 |fonse_cell_line_closure=FF:0101035
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aKasumi-6.CNhs13052.10792-110H9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10792-110H9
 |is_a=EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
+|library_id=CNhs13052
+|library_id_phase_based=2:CNhs13052
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10792
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10792
 |name=acute myeloid leukemia (FAB M2) cell line:Kasumi-6
 |namespace=FANTOM5
@@ Line 43: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13052,LSID1000,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=110
 |rna_catalog_number=
@@ Line 58: / Line 78: @@
 |rna_weight_ug=14.93856
 |sample_age=64
+|sample_category=cell lines
 |sample_cell_catalog=jcrb1024
 |sample_cell_line=Kasumi-6
@@ Line 79: / Line 100: @@
 |top_motifs=MYB:2.01542572499;ALX1:1.92837605817;YY1:1.40520928024;NANOG{mouse}:1.3488228133;STAT1,3:1.31513674822;ZBTB16:1.2881787963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2538707192;E2F1..5:1.24998385864;ELF1,2,4:1.0959170023;GATA6:1.08034426275;SPIB:1.03726252676;IKZF2:0.999158802799;POU3F1..4:0.989558835258;ARID5B:0.980670982875;HOXA9_MEIS1:0.949901632682;DBP:0.923631830205;BREu{core}:0.91901570171;TEF:0.907171630302;CDX1,2,4:0.805390140793;PAX4:0.796327530245;NKX6-1,2:0.773753767242;SPI1:0.757477308665;PITX1..3:0.756802870849;FOXP3:0.746652715623;FOXA2:0.734474616114;DMAP1_NCOR{1,2}_SMARC:0.720886597396;ELK1,4_GABP{A,B1}:0.711935108209;ZNF143:0.617234767017;ETS1,2:0.616645316809;AIRE:0.612566312004;NKX2-2,8:0.605769791445;ZNF384:0.590253397316;TLX2:0.585341107915;NFY{A,B,C}:0.584514554951;NKX2-3_NKX2-5:0.577883439836;RUNX1..3:0.568931413175;RBPJ:0.544755962627;FOX{I1,J2}:0.521677444883;CUX2:0.507430517488;RXRA_VDR{dimer}:0.453632031643;SREBF1,2:0.425807120419;MYOD1:0.424498802243;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.415931775298;NRF1:0.398438592283;RFX2..5_RFXANK_RFXAP:0.389992492193;FOXP1:0.364954089975;bHLH_family:0.315915384311;NKX3-1:0.308595150572;HBP1_HMGB_SSRP1_UBTF:0.297236600526;NANOG:0.248241704143;EVI1:0.221026046246;ONECUT1,2:0.21982904271;ESRRA:0.218526696405;AHR_ARNT_ARNT2:0.20491943666;TOPORS:0.190322058537;RXR{A,B,G}:0.18729429944;GZF1:0.167840915421;IRF1,2:0.152611948458;FOXQ1:0.141478870356;FOXN1:0.137313416085;FOXM1:0.137309291898;PAX8:0.129943459861;IRF7:0.0967290201143;PBX1:0.0705352902237;PRRX1,2:0.0670352194065;AR:0.057061370295;HAND1,2:0.0475462381696;STAT5{A,B}:0.0133042204378;ZNF238:0.0124369062864;NR6A1:0.00523897082896;GCM1,2:-0.000660968952848;HOX{A6,A7,B6,B7}:-0.00195100132819;TGIF1:-0.0566988476867;EN1,2:-0.0606606972253;MYBL2:-0.0867721528755;SNAI1..3:-0.0874351375351;NKX2-1,4:-0.0964411996474;KLF4:-0.115123891403;VSX1,2:-0.121940749051;ZEB1:-0.128897237605;CRX:-0.132542123043;NR5A1,2:-0.166010200734;OCT4_SOX2{dimer}:-0.166753800657;PAX2:-0.168862458593;PAX6:-0.181542928384;POU6F1:-0.184274969074;PAX3,7:-0.193563144603;ATF5_CREB3:-0.205986777822;NFKB1_REL_RELA:-0.23822332698;MYFfamily:-0.24776429597;POU2F1..3:-0.257270851157;RFX1:-0.269065792642;RORA:-0.27461872897;PPARG:-0.276868432551;XBP1:-0.280467002559;CEBPA,B_DDIT3:-0.281829872333;UFEwm:-0.285438834008;HNF4A_NR2F1,2:-0.289375788621;HOX{A4,D4}:-0.294753668218;NFE2:-0.304813896577;HNF1A:-0.319464477681;SOX{8,9,10}:-0.341100534424;BPTF:-0.342716348097;ESR1:-0.359047406772;REST:-0.377598271552;CREB1:-0.379812969831;PRDM1:-0.401031247361;SOX17:-0.402369767682;GFI1:-0.403287030863;POU5F1:-0.409977978727;EP300:-0.41504247687;ATF4:-0.427296834119;GATA4:-0.42809468599;NKX3-2:-0.428405380679;HMGA1,2:-0.432742744503;HES1:-0.459977517751;NFIX:-0.486826736172;FOXO1,3,4:-0.492078190074;RREB1:-0.4979625181;LMO2:-0.523318635122;SMAD1..7,9:-0.541357737894;FOSL2:-0.543599367559;HIF1A:-0.545115042867;NFE2L1:-0.545652266904;NFE2L2:-0.56391789775;TFDP1:-0.576527041309;POU1F1:-0.579703141367;HLF:-0.582845569398;PAX5:-0.595001702858;ZBTB6:-0.600051564387;PDX1:-0.614928022082;TFAP4:-0.616415687741;FOXD3:-0.618207880766;ZNF148:-0.629797646072;STAT2,4,6:-0.667094360655;FOS_FOS{B,L1}_JUN{B,D}:-0.669684405853;BACH2:-0.67463617301;CDC5L:-0.676679740961;MEF2{A,B,C,D}:-0.702249100664;NFIL3:-0.704677970559;FOX{F1,F2,J1}:-0.760982241205;NHLH1,2:-0.76217285627;TAL1_TCF{3,4,12}:-0.769922948607;SOX2:-0.770911054888;HOX{A5,B5}:-0.775852463306;LEF1_TCF7_TCF7L1,2:-0.830235176056;MZF1:-0.83468618675;SOX5:-0.850681972602;PAX1,9:-0.878451266025;LHX3,4:-0.89057039884;ZIC1..3:-0.897962085132;NR1H4:-0.958301160112;SRF:-0.986749229347;IKZF1:-1.00872255743;GTF2I:-1.0095936735;FOX{D1,D2}:-1.01405143857;SPZ1:-1.02879186699;ZFP161:-1.03868232775;HIC1:-1.05456050502;ADNP_IRX_SIX_ZHX:-1.06732271502;GTF2A1,2:-1.08818946901;T:-1.1327680417;TFAP2{A,C}:-1.15233775209;NFATC1..3:-1.15417486469;MED-1{core}:-1.17384835315;ATF2:-1.18926702981;GLI1..3:-1.21144600861;ATF6:-1.21669655887;TLX1..3_NFIC{dimer}:-1.2293072725;ZNF423:-1.26296195454;MAZ:-1.28599593724;HSF1,2:-1.29367180388;MTE{core}:-1.3214470484;TBP:-1.32464669391;MAFB:-1.33896574822;TEAD1:-1.35018038321;NR3C1:-1.35935357705;FOXL1:-1.36569982234;ALX4:-1.39367746651;TP53:-1.41638021263;MTF1:-1.42515238783;GFI1B:-1.43589266056;TFAP2B:-1.44262617148;EBF1:-1.45484259504;HMX1:-1.45883172813;PATZ1:-1.52638529709;XCPE1{core}:-1.67612868699;EGR1..3:-1.69969940029;TBX4,5:-1.73023890441;SP1:-1.88430138021;JUN:-1.9331272194;TFCP2:-2.19197927525
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10792-110H9;search_select_hide=table117:FF:10792-110H9
 }}

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FF:10792-110H9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:05, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0