FF:10774-110F9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005487 | ||
|accession_numbers=CAGE;DRX007966;DRR008838;DRZ000263;DRZ001648;DRZ011613;DRZ012998 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0002346,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0010316,UBERON:0005291,UBERON:0010317 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:171,DOID:3095,DOID:2994 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:10774-110F9 | |fonse_cell_line=FF:10774-110F9 | ||
|fonse_cell_line_closure=FF:10774-110F9 | |fonse_cell_line_closure=FF:10774-110F9 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aTASK1.CNhs11866.10774-110F9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aTASK1.CNhs11866.10774-110F9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aTASK1.CNhs11866.10774-110F9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aTASK1.CNhs11866.10774-110F9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aTASK1.CNhs11866.10774-110F9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10774-110F9 | |id=FF:10774-110F9 | ||
|is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346 | |is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346 | ||
|name=neuroectodermal tumor | |is_obsolete= | ||
|library_id=CNhs11866 | |||
|library_id_phase_based=2:CNhs11866 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10774 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10774 | |||
|name=neuroectodermal tumor cell line:TASK1 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11866,LSID830,release010,COMPLETED | |profile_hcage=CNhs11866,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=16.43814 | |rna_weight_ug=16.43814 | ||
|sample_age=21 | |sample_age=21 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0139 | |sample_cell_catalog=jcrb0139 | ||
|sample_cell_line=TASK1 | |sample_cell_line=TASK1 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.69221636520156e-278!GO:0043227;membrane-bound organelle;1.01495682803368e-256!GO:0043231;intracellular membrane-bound organelle;1.01495682803368e-256!GO:0043226;organelle;1.06025116135389e-243!GO:0043229;intracellular organelle;5.69232513563691e-243!GO:0044422;organelle part;9.74199807510703e-174!GO:0044446;intracellular organelle part;5.53496337428951e-172!GO:0005737;cytoplasm;2.7215212698836e-168!GO:0044444;cytoplasmic part;2.05360093489478e-135!GO:0044237;cellular metabolic process;1.00361180886519e-115!GO:0005634;nucleus;3.34490827069231e-115!GO:0044238;primary metabolic process;2.24680758305717e-113!GO:0032991;macromolecular complex;6.63927126104244e-112!GO:0043170;macromolecule metabolic process;6.62830472809406e-106!GO:0030529;ribonucleoprotein complex;1.65016248053651e-104!GO:0043233;organelle lumen;1.91475972033348e-97!GO:0031974;membrane-enclosed lumen;1.91475972033348e-97!GO:0044428;nuclear part;8.49029607807549e-97!GO:0005739;mitochondrion;4.07255398977284e-90!GO:0003723;RNA binding;1.49568701383718e-85!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.98201230474491e-68!GO:0043283;biopolymer metabolic process;4.50903520584273e-67!GO:0010467;gene expression;3.79879758411055e-65!GO:0006396;RNA processing;5.40998993762735e-64!GO:0005840;ribosome;2.8122507194917e-63!GO:0044429;mitochondrial part;1.08984395644224e-60!GO:0006412;translation;1.41151691951357e-58!GO:0031981;nuclear lumen;6.19857083585975e-58!GO:0031090;organelle membrane;1.84376081348843e-56!GO:0005515;protein binding;4.85531365100587e-56!GO:0031967;organelle envelope;4.28491529736473e-54!GO:0003735;structural constituent of ribosome;5.52193066863316e-54!GO:0031975;envelope;1.24660770409816e-53!GO:0043234;protein complex;2.46348484019413e-53!GO:0044249;cellular biosynthetic process;1.83660612257961e-47!GO:0006259;DNA metabolic process;3.64252574175365e-47!GO:0009058;biosynthetic process;1.04078425691627e-46!GO:0003676;nucleic acid binding;4.19302801582265e-46!GO:0016043;cellular component organization and biogenesis;5.00850833356696e-46!GO:0033279;ribosomal subunit;1.12107837041321e-45!GO:0016071;mRNA metabolic process;1.75185727992986e-45!GO:0033036;macromolecule localization;8.21602545330731e-45!GO:0015031;protein transport;4.51193915996684e-44!GO:0019538;protein metabolic process;9.2053433544596e-44!GO:0009059;macromolecule biosynthetic process;3.02599971724712e-43!GO:0008380;RNA splicing;3.12373406800307e-43!GO:0008104;protein localization;1.02706779172832e-40!GO:0045184;establishment of protein localization;5.02547967080622e-40!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.12278021977327e-39!GO:0006397;mRNA processing;1.51841465624045e-39!GO:0044260;cellular macromolecule metabolic process;4.43800674665383e-39!GO:0065003;macromolecular complex assembly;1.04968708830268e-38!GO:0006996;organelle organization and biogenesis;2.39296362687571e-38!GO:0044267;cellular protein metabolic process;2.47522708509528e-38!GO:0005740;mitochondrial envelope;5.47468921268016e-38!GO:0019866;organelle inner membrane;1.10384875368156e-36!GO:0046907;intracellular transport;2.48461051628493e-36!GO:0031966;mitochondrial membrane;4.39393561580622e-36!GO:0005654;nucleoplasm;4.2786689558897e-35!GO:0043228;non-membrane-bound organelle;5.16501610873496e-34!GO:0043232;intracellular non-membrane-bound organelle;5.16501610873496e-34!GO:0005743;mitochondrial inner membrane;9.96186105323369e-34!GO:0016070;RNA metabolic process;1.28155277290121e-33!GO:0005829;cytosol;2.88704090117805e-33!GO:0022607;cellular component assembly;3.45512525244111e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.18158889933769e-32!GO:0005681;spliceosome;2.16371176188599e-31!GO:0006886;intracellular protein transport;1.23330119112575e-30!GO:0007049;cell cycle;3.47576495153167e-30!GO:0000166;nucleotide binding;2.29551505313126e-29!GO:0031980;mitochondrial lumen;2.79106766949231e-28!GO:0005759;mitochondrial matrix;2.79106766949231e-28!GO:0044451;nucleoplasm part;9.44224225744978e-28!GO:0006974;response to DNA damage stimulus;4.47993882915274e-26!GO:0044445;cytosolic part;6.44219737465197e-26!GO:0006281;DNA repair;1.01213080246313e-24!GO:0044455;mitochondrial membrane part;1.41071441639963e-24!GO:0005694;chromosome;1.69150096505011e-24!GO:0015934;large ribosomal subunit;2.2965525814768e-24!GO:0005730;nucleolus;3.69366819437417e-24!GO:0051649;establishment of cellular localization;5.75983029657413e-24!GO:0006119;oxidative phosphorylation;6.90688127994638e-24!GO:0051641;cellular localization;1.57811843690603e-23!GO:0022402;cell cycle process;5.64773537903558e-23!GO:0015935;small ribosomal subunit;1.68533244482316e-22!GO:0016462;pyrophosphatase activity;5.61769495555113e-22!GO:0006260;DNA replication;8.93737591667297e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.05945391803481e-21!GO:0016874;ligase activity;1.40487043370543e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.45733798710858e-21!GO:0022618;protein-RNA complex assembly;4.46185118244841e-21!GO:0051276;chromosome organization and biogenesis;5.73510870142025e-21!GO:0044427;chromosomal part;8.84663304791245e-21!GO:0012505;endomembrane system;1.00386688075508e-20!GO:0000278;mitotic cell cycle;1.10315956096869e-20!GO:0006457;protein folding;1.46400540059988e-20!GO:0017111;nucleoside-triphosphatase activity;1.51131557238602e-20!GO:0017076;purine nucleotide binding;1.81378997271213e-19!GO:0009719;response to endogenous stimulus;3.10499291549961e-19!GO:0042254;ribosome biogenesis and assembly;3.536713400345e-19!GO:0032553;ribonucleotide binding;5.69738035624037e-19!GO:0032555;purine ribonucleotide binding;5.69738035624037e-19!GO:0006512;ubiquitin cycle;2.10607359979102e-18!GO:0051186;cofactor metabolic process;2.95926430595763e-18!GO:0005761;mitochondrial ribosome;2.95926430595763e-18!GO:0000313;organellar ribosome;2.95926430595763e-18!GO:0005746;mitochondrial respiratory chain;2.96342332294231e-18!GO:0030554;adenyl nucleotide binding;6.84818696928238e-18!GO:0005524;ATP binding;7.88676442781428e-18!GO:0022403;cell cycle phase;8.26997298824377e-18!GO:0044265;cellular macromolecule catabolic process;1.44064105357187e-17!GO:0032559;adenyl ribonucleotide binding;1.50627171079283e-17!GO:0008135;translation factor activity, nucleic acid binding;2.41810444203225e-17!GO:0006399;tRNA metabolic process;2.80549664640512e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.07384380327512e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.52854510300301e-17!GO:0000087;M phase of mitotic cell cycle;3.54372219061744e-17!GO:0006605;protein targeting;3.7784888295274e-17!GO:0050136;NADH dehydrogenase (quinone) activity;4.73525768698238e-17!GO:0003954;NADH dehydrogenase activity;4.73525768698238e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.73525768698238e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;6.06763488766058e-17!GO:0007067;mitosis;8.70427719350324e-17!GO:0051301;cell division;1.04469883430696e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.62029462612145e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.88622881758764e-16!GO:0005635;nuclear envelope;2.07385953387485e-16!GO:0019941;modification-dependent protein catabolic process;2.77662818157481e-16!GO:0043632;modification-dependent macromolecule catabolic process;2.77662818157481e-16!GO:0006323;DNA packaging;2.84249998520083e-16!GO:0005783;endoplasmic reticulum;4.07394369760062e-16!GO:0044257;cellular protein catabolic process;4.6312022062949e-16!GO:0031965;nuclear membrane;6.26655592552589e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;7.1990853274273e-16!GO:0000375;RNA splicing, via transesterification reactions;7.1990853274273e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.1990853274273e-16!GO:0044432;endoplasmic reticulum part;1.03664974475698e-15!GO:0016887;ATPase activity;1.1992375675533e-15!GO:0044453;nuclear membrane part;1.23789033863773e-15!GO:0000279;M phase;2.76363819011519e-15!GO:0042623;ATPase activity, coupled;3.16217071408299e-15!GO:0042775;organelle ATP synthesis coupled electron transport;3.49753250897173e-15!GO:0042773;ATP synthesis coupled electron transport;3.49753250897173e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.54566588387038e-15!GO:0043285;biopolymer catabolic process;3.55957719921695e-15!GO:0030964;NADH dehydrogenase complex (quinone);5.75774176598894e-15!GO:0045271;respiratory chain complex I;5.75774176598894e-15!GO:0005747;mitochondrial respiratory chain complex I;5.75774176598894e-15!GO:0044248;cellular catabolic process;1.09798938677224e-14!GO:0009057;macromolecule catabolic process;1.11833168864315e-14!GO:0006732;coenzyme metabolic process;1.34666515256103e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.20509920743915e-14!GO:0008134;transcription factor binding;3.72608828770975e-14!GO:0048770;pigment granule;3.88555801487025e-14!GO:0042470;melanosome;3.88555801487025e-14!GO:0005643;nuclear pore;8.75436700957776e-14!GO:0051082;unfolded protein binding;9.12193776713681e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.06315931001463e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.85412405182478e-13!GO:0004386;helicase activity;2.93136227619602e-13!GO:0030163;protein catabolic process;3.15568907962846e-13!GO:0006413;translational initiation;3.6385680822301e-13!GO:0003743;translation initiation factor activity;5.29339877549044e-13!GO:0006364;rRNA processing;5.35413457718897e-13!GO:0048193;Golgi vesicle transport;5.58350640579991e-13!GO:0016604;nuclear body;6.21396628378215e-13!GO:0006446;regulation of translational initiation;8.7117680746181e-13!GO:0006913;nucleocytoplasmic transport;9.03697752206855e-13!GO:0016072;rRNA metabolic process;1.72400767703867e-12!GO:0051169;nuclear transport;1.72400767703867e-12!GO:0050657;nucleic acid transport;2.7888878151312e-12!GO:0051236;establishment of RNA localization;2.7888878151312e-12!GO:0050658;RNA transport;2.7888878151312e-12!GO:0065002;intracellular protein transport across a membrane;2.8975796106494e-12!GO:0006403;RNA localization;3.57201889458391e-12!GO:0017038;protein import;3.58085211091992e-12!GO:0008565;protein transporter activity;4.06406610567435e-12!GO:0009259;ribonucleotide metabolic process;6.28973855507171e-12!GO:0043412;biopolymer modification;6.50227796395836e-12!GO:0006163;purine nucleotide metabolic process;6.67295755361873e-12!GO:0006333;chromatin assembly or disassembly;9.7703924649153e-12!GO:0051726;regulation of cell cycle;1.01312615807149e-11!GO:0065004;protein-DNA complex assembly;1.06954822260947e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.06954822260947e-11!GO:0004812;aminoacyl-tRNA ligase activity;1.06954822260947e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.06954822260947e-11!GO:0000074;regulation of progression through cell cycle;1.28387042848591e-11!GO:0008026;ATP-dependent helicase activity;1.30956549498859e-11!GO:0043038;amino acid activation;2.96454051408372e-11!GO:0006418;tRNA aminoacylation for protein translation;2.96454051408372e-11!GO:0043039;tRNA aminoacylation;2.96454051408372e-11!GO:0005794;Golgi apparatus;3.2016799152337e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.35907422060369e-11!GO:0006261;DNA-dependent DNA replication;3.46226929656296e-11!GO:0046930;pore complex;3.63920380550365e-11!GO:0005789;endoplasmic reticulum membrane;4.00752556362011e-11!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.57449691234729e-11!GO:0006164;purine nucleotide biosynthetic process;7.38534691950713e-11!GO:0000785;chromatin;9.16039113434733e-11!GO:0006461;protein complex assembly;9.56704020473784e-11!GO:0016607;nuclear speck;1.09926145604798e-10!GO:0009150;purine ribonucleotide metabolic process;1.38001635821875e-10!GO:0051028;mRNA transport;1.47847100765546e-10!GO:0009260;ribonucleotide biosynthetic process;1.48257145565687e-10!GO:0009055;electron carrier activity;3.11351899219571e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.59838882201538e-10!GO:0051188;cofactor biosynthetic process;4.36492183770668e-10!GO:0016779;nucleotidyltransferase activity;4.89487239536994e-10!GO:0016568;chromatin modification;6.25023445727282e-10!GO:0043566;structure-specific DNA binding;8.94810806927721e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.03910127547715e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.16364801152284e-09!GO:0006464;protein modification process;1.51527186480341e-09!GO:0016740;transferase activity;1.5817398667236e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.58232007348365e-09!GO:0003712;transcription cofactor activity;2.35133083480458e-09!GO:0007005;mitochondrion organization and biogenesis;2.52005160205205e-09!GO:0009141;nucleoside triphosphate metabolic process;3.23887579128064e-09!GO:0000775;chromosome, pericentric region;3.66012935782367e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.91349778310852e-09!GO:0006334;nucleosome assembly;4.25908462268009e-09!GO:0009060;aerobic respiration;7.03917737827151e-09!GO:0009199;ribonucleoside triphosphate metabolic process;7.69041984028482e-09!GO:0016853;isomerase activity;9.13945807483491e-09!GO:0031497;chromatin assembly;1.0836831234413e-08!GO:0016192;vesicle-mediated transport;1.28561531721124e-08!GO:0015630;microtubule cytoskeleton;1.51780165562929e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.7289011085256e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.80804614773058e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.80804614773058e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.00843272030132e-08!GO:0005793;ER-Golgi intermediate compartment;2.05127011404894e-08!GO:0006366;transcription from RNA polymerase II promoter;2.05518912723034e-08!GO:0019222;regulation of metabolic process;2.27614544395118e-08!GO:0005667;transcription factor complex;2.33176202380802e-08!GO:0045333;cellular respiration;2.66738321804279e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.89254510908896e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.89254510908896e-08!GO:0009056;catabolic process;2.91084226727351e-08!GO:0043687;post-translational protein modification;2.91084226727351e-08!GO:0003697;single-stranded DNA binding;3.17588743463492e-08!GO:0015986;ATP synthesis coupled proton transport;3.22671202977571e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.22671202977571e-08!GO:0003899;DNA-directed RNA polymerase activity;3.81790905205008e-08!GO:0008094;DNA-dependent ATPase activity;5.12267233521519e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.09579177576147e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.09579177576147e-08!GO:0008639;small protein conjugating enzyme activity;7.53824287934808e-08!GO:0005657;replication fork;7.83543147683418e-08!GO:0009108;coenzyme biosynthetic process;8.56243873990675e-08!GO:0016741;transferase activity, transferring one-carbon groups;9.44771816576481e-08!GO:0005819;spindle;9.89492716514633e-08!GO:0043623;cellular protein complex assembly;9.91230764191857e-08!GO:0019829;cation-transporting ATPase activity;1.2439232736007e-07!GO:0046034;ATP metabolic process;1.47062882236189e-07!GO:0006606;protein import into nucleus;1.50392943923911e-07!GO:0008168;methyltransferase activity;1.57029412004491e-07!GO:0050794;regulation of cellular process;1.60141620767196e-07!GO:0004842;ubiquitin-protein ligase activity;1.73806656272946e-07!GO:0051170;nuclear import;1.77274417971191e-07!GO:0008033;tRNA processing;2.01675108858089e-07!GO:0006099;tricarboxylic acid cycle;2.1343619290835e-07!GO:0046356;acetyl-CoA catabolic process;2.1343619290835e-07!GO:0019787;small conjugating protein ligase activity;2.26306257519077e-07!GO:0045259;proton-transporting ATP synthase complex;2.50164581242961e-07!GO:0009109;coenzyme catabolic process;2.59724069854629e-07!GO:0006084;acetyl-CoA metabolic process;3.07085783182753e-07!GO:0006752;group transfer coenzyme metabolic process;3.38948805362106e-07!GO:0007051;spindle organization and biogenesis;3.63181453316238e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.27303831396329e-07!GO:0009117;nucleotide metabolic process;4.83428370524159e-07!GO:0006754;ATP biosynthetic process;5.01124380369438e-07!GO:0006753;nucleoside phosphate metabolic process;5.01124380369438e-07!GO:0005768;endosome;5.0409014200786e-07!GO:0006350;transcription;5.59016873415995e-07!GO:0016881;acid-amino acid ligase activity;5.743712275363e-07!GO:0006888;ER to Golgi vesicle-mediated transport;7.94441486694707e-07!GO:0005762;mitochondrial large ribosomal subunit;9.03619019416581e-07!GO:0000315;organellar large ribosomal subunit;9.03619019416581e-07!GO:0000245;spliceosome assembly;9.72305790011181e-07!GO:0051187;cofactor catabolic process;1.08585865305213e-06!GO:0031323;regulation of cellular metabolic process;1.18024901686554e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.30692045674567e-06!GO:0005788;endoplasmic reticulum lumen;1.74294344664499e-06!GO:0044440;endosomal part;1.95262255342237e-06!GO:0010008;endosome membrane;1.95262255342237e-06!GO:0000075;cell cycle checkpoint;2.30016525554015e-06!GO:0051329;interphase of mitotic cell cycle;2.53032442712968e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.58270039266056e-06!GO:0012501;programmed cell death;3.96480463057863e-06!GO:0000314;organellar small ribosomal subunit;4.11422045984535e-06!GO:0005763;mitochondrial small ribosomal subunit;4.11422045984535e-06!GO:0005813;centrosome;5.22940269184341e-06!GO:0006915;apoptosis;5.83608573563982e-06!GO:0006839;mitochondrial transport;5.89404714939769e-06!GO:0032446;protein modification by small protein conjugation;6.30644482411513e-06!GO:0051325;interphase;7.04708339124338e-06!GO:0000151;ubiquitin ligase complex;7.04708339124338e-06!GO:0044452;nucleolar part;7.55482309320599e-06!GO:0005815;microtubule organizing center;8.55247602413895e-06!GO:0003724;RNA helicase activity;1.00548858163494e-05!GO:0016491;oxidoreductase activity;1.05693021891521e-05!GO:0016787;hydrolase activity;1.21007765480145e-05!GO:0006613;cotranslational protein targeting to membrane;1.24203819445054e-05!GO:0044431;Golgi apparatus part;1.29963386819637e-05!GO:0051246;regulation of protein metabolic process;1.3014859617978e-05!GO:0006091;generation of precursor metabolites and energy;1.4172670238584e-05!GO:0010468;regulation of gene expression;1.56236054346665e-05!GO:0048475;coated membrane;1.65754444475916e-05!GO:0030117;membrane coat;1.65754444475916e-05!GO:0016567;protein ubiquitination;1.67079217160678e-05!GO:0043681;protein import into mitochondrion;2.24166897603817e-05!GO:0008219;cell death;2.630256226802e-05!GO:0016265;death;2.630256226802e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.73129029491335e-05!GO:0003678;DNA helicase activity;2.77014343656459e-05!GO:0003677;DNA binding;3.18209502231348e-05!GO:0016859;cis-trans isomerase activity;3.2255244211448e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.25425959514177e-05!GO:0008654;phospholipid biosynthetic process;3.25455517231811e-05!GO:0006310;DNA recombination;3.48431813772107e-05!GO:0000776;kinetochore;3.60988217232095e-05!GO:0016363;nuclear matrix;3.82791655347851e-05!GO:0043021;ribonucleoprotein binding;4.00054842252883e-05!GO:0006626;protein targeting to mitochondrion;4.00054842252883e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.08132250670766e-05!GO:0005839;proteasome core complex (sensu Eukaryota);4.25694146901171e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.51548303795263e-05!GO:0045454;cell redox homeostasis;4.55350825491104e-05!GO:0032774;RNA biosynthetic process;4.61040026524177e-05!GO:0003682;chromatin binding;5.31363155959596e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.64714205991601e-05!GO:0030120;vesicle coat;6.0936347276657e-05!GO:0030662;coated vesicle membrane;6.0936347276657e-05!GO:0006351;transcription, DNA-dependent;6.11718042953435e-05!GO:0005770;late endosome;6.28439911327964e-05!GO:0006383;transcription from RNA polymerase III promoter;6.59917887906049e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;6.7297046100314e-05!GO:0005798;Golgi-associated vesicle;7.03476995773882e-05!GO:0046483;heterocycle metabolic process;7.25744480828089e-05!GO:0003690;double-stranded DNA binding;7.44567478008119e-05!GO:0006302;double-strand break repair;7.69608362349197e-05!GO:0000059;protein import into nucleus, docking;8.30881496888811e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.31719078879259e-05!GO:0007006;mitochondrial membrane organization and biogenesis;9.48390147404206e-05!GO:0045786;negative regulation of progression through cell cycle;9.75764842294867e-05!GO:0005769;early endosome;0.00010040019264364!GO:0003684;damaged DNA binding;0.000104030588377942!GO:0007059;chromosome segregation;0.000109935578358919!GO:0000786;nucleosome;0.000133672334796072!GO:0004298;threonine endopeptidase activity;0.000149630022624662!GO:0046474;glycerophospholipid biosynthetic process;0.000152433462857059!GO:0000049;tRNA binding;0.000156637723397408!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000164607469986971!GO:0051168;nuclear export;0.000177575838901708!GO:0030880;RNA polymerase complex;0.000183548191094642!GO:0031968;organelle outer membrane;0.000195132765935245!GO:0050662;coenzyme binding;0.000224556375624832!GO:0031988;membrane-bound vesicle;0.000228962848037669!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000236226235687388!GO:0008186;RNA-dependent ATPase activity;0.000237765039486632!GO:0009165;nucleotide biosynthetic process;0.00024146391121553!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000241780095496178!GO:0051052;regulation of DNA metabolic process;0.000246599117795287!GO:0031324;negative regulation of cellular metabolic process;0.000251163961690766!GO:0003713;transcription coactivator activity;0.000269686989093358!GO:0006414;translational elongation;0.000273734277242431!GO:0016564;transcription repressor activity;0.00027888166509363!GO:0006793;phosphorus metabolic process;0.000286230894090901!GO:0006796;phosphate metabolic process;0.000286230894090901!GO:0046489;phosphoinositide biosynthetic process;0.000286230894090901!GO:0019867;outer membrane;0.000286230894090901!GO:0005741;mitochondrial outer membrane;0.000289154012647438!GO:0032508;DNA duplex unwinding;0.00031329599134412!GO:0032392;DNA geometric change;0.00031329599134412!GO:0003714;transcription corepressor activity;0.000320747257771039!GO:0031982;vesicle;0.000323805427509071!GO:0000139;Golgi membrane;0.000325176463381307!GO:0006520;amino acid metabolic process;0.000355560166573116!GO:0003729;mRNA binding;0.000356848205335665!GO:0016023;cytoplasmic membrane-bound vesicle;0.000363881002316052!GO:0006612;protein targeting to membrane;0.000364557709829156!GO:0005048;signal sequence binding;0.000387327165341881!GO:0009451;RNA modification;0.000423995087393161!GO:0003924;GTPase activity;0.000455381582105059!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000457619189932176!GO:0000428;DNA-directed RNA polymerase complex;0.000457619189932176!GO:0006082;organic acid metabolic process;0.000464422328977664!GO:0008652;amino acid biosynthetic process;0.000470080165760368!GO:0030867;rough endoplasmic reticulum membrane;0.000477629870299153!GO:0007052;mitotic spindle organization and biogenesis;0.00048040964249938!GO:0007017;microtubule-based process;0.000489867802657624!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00049430188913751!GO:0019752;carboxylic acid metabolic process;0.000501996130475825!GO:0031072;heat shock protein binding;0.000502367571623784!GO:0050789;regulation of biological process;0.000505181394109148!GO:0045449;regulation of transcription;0.000508049965700872!GO:0006270;DNA replication initiation;0.000514458766796962!GO:0044262;cellular carbohydrate metabolic process;0.000537571253218308!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000546506001748351!GO:0005684;U2-dependent spliceosome;0.000546506001748351!GO:0019899;enzyme binding;0.000576728659772052!GO:0006284;base-excision repair;0.000589333262885557!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000601927896592194!GO:0051920;peroxiredoxin activity;0.000611080396395561!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000611262803110915!GO:0016310;phosphorylation;0.000615768177154002!GO:0051427;hormone receptor binding;0.000634349799937094!GO:0031410;cytoplasmic vesicle;0.000650820073417466!GO:0004004;ATP-dependent RNA helicase activity;0.000662302334569757!GO:0005525;GTP binding;0.000669771482648406!GO:0006268;DNA unwinding during replication;0.000684150728785839!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000691324901635163!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.000693737166381245!GO:0007088;regulation of mitosis;0.000715874509829345!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000718076880757353!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000718076880757353!GO:0006352;transcription initiation;0.000775155199196766!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000779771811455828!GO:0015631;tubulin binding;0.000781454523237308!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000836351027682379!GO:0005791;rough endoplasmic reticulum;0.000861221745000641!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00089896216634021!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00089896216634021!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00089896216634021!GO:0004518;nuclease activity;0.000984752145252677!GO:0015992;proton transport;0.00100012384457355!GO:0006338;chromatin remodeling;0.00100459645447978!GO:0006818;hydrogen transport;0.00101846551965844!GO:0005773;vacuole;0.00102976956119699!GO:0035257;nuclear hormone receptor binding;0.00117229719572988!GO:0003746;translation elongation factor activity;0.0011751025902677!GO:0051539;4 iron, 4 sulfur cluster binding;0.00118702023213816!GO:0048471;perinuclear region of cytoplasm;0.00126161920216876!GO:0043284;biopolymer biosynthetic process;0.00126305148564652!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00131958459095853!GO:0015399;primary active transmembrane transporter activity;0.00131958459095853!GO:0006506;GPI anchor biosynthetic process;0.00136409789353728!GO:0005637;nuclear inner membrane;0.00139220860397154!GO:0004527;exonuclease activity;0.00139832567095018!GO:0005876;spindle microtubule;0.00140628486599266!GO:0048037;cofactor binding;0.0014399514399705!GO:0007093;mitotic cell cycle checkpoint;0.00145006801148194!GO:0051789;response to protein stimulus;0.00146097539759378!GO:0006986;response to unfolded protein;0.00146097539759378!GO:0006144;purine base metabolic process;0.00158837751044266!GO:0005885;Arp2/3 protein complex;0.00161224025107094!GO:0051540;metal cluster binding;0.00163752364623432!GO:0051536;iron-sulfur cluster binding;0.00163752364623432!GO:0009892;negative regulation of metabolic process;0.0016981372362557!GO:0051087;chaperone binding;0.00171492738200951!GO:0006497;protein amino acid lipidation;0.00172024627116765!GO:0006505;GPI anchor metabolic process;0.00174231510279698!GO:0009112;nucleobase metabolic process;0.00182919687976832!GO:0048500;signal recognition particle;0.0018580021598317!GO:0043596;nuclear replication fork;0.00186982178096005!GO:0000228;nuclear chromosome;0.00188259452937667!GO:0033116;ER-Golgi intermediate compartment membrane;0.00195097269863522!GO:0031970;organelle envelope lumen;0.00210678340998016!GO:0005874;microtubule;0.00212963234381044!GO:0009116;nucleoside metabolic process;0.00214961382790858!GO:0008250;oligosaccharyl transferase complex;0.00222398310288468!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00238278457083895!GO:0004576;oligosaccharyl transferase activity;0.00240574279155856!GO:0016126;sterol biosynthetic process;0.00262410093635442!GO:0006401;RNA catabolic process;0.0026390149596282!GO:0006402;mRNA catabolic process;0.00266865960853012!GO:0003756;protein disulfide isomerase activity;0.00273458902693415!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00273458902693415!GO:0006275;regulation of DNA replication;0.00273671086614651!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00278015457904119!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00287268150606774!GO:0000323;lytic vacuole;0.00289051063309402!GO:0005764;lysosome;0.00289051063309402!GO:0046128;purine ribonucleoside metabolic process;0.00289145534965995!GO:0042278;purine nucleoside metabolic process;0.00289145534965995!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00291670204933583!GO:0016481;negative regulation of transcription;0.00296079919890519!GO:0000922;spindle pole;0.00297297586444041!GO:0042158;lipoprotein biosynthetic process;0.00299943972786016!GO:0009124;nucleoside monophosphate biosynthetic process;0.00307694789448586!GO:0009123;nucleoside monophosphate metabolic process;0.00307694789448586!GO:0006650;glycerophospholipid metabolic process;0.00313789164229138!GO:0008312;7S RNA binding;0.00315471938078089!GO:0005758;mitochondrial intermembrane space;0.0031636869336169!GO:0006355;regulation of transcription, DNA-dependent;0.00322333078078329!GO:0006400;tRNA modification;0.00325895258420796!GO:0031252;leading edge;0.00332878185516047!GO:0006595;polyamine metabolic process;0.0033709941223014!GO:0042981;regulation of apoptosis;0.00340192867946139!GO:0046467;membrane lipid biosynthetic process;0.00341646496837721!GO:0008610;lipid biosynthetic process;0.00341646496837721!GO:0004003;ATP-dependent DNA helicase activity;0.00341646496837721!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00345715252020537!GO:0016251;general RNA polymerase II transcription factor activity;0.00354434890559852!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00356574948057302!GO:0006519;amino acid and derivative metabolic process;0.00356574948057302!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00359338106270535!GO:0045047;protein targeting to ER;0.00359338106270535!GO:0006289;nucleotide-excision repair;0.0037853328281235!GO:0030384;phosphoinositide metabolic process;0.00381953178932458!GO:0030663;COPI coated vesicle membrane;0.00383746422430629!GO:0030126;COPI vesicle coat;0.00383746422430629!GO:0003711;transcription elongation regulator activity;0.00386336773360264!GO:0008139;nuclear localization sequence binding;0.0040188313205618!GO:0006740;NADPH regeneration;0.00409899310709567!GO:0006098;pentose-phosphate shunt;0.00409899310709567!GO:0009081;branched chain family amino acid metabolic process;0.00410134858113352!GO:0042393;histone binding;0.0041073519977716!GO:0043067;regulation of programmed cell death;0.00420686321369029!GO:0051053;negative regulation of DNA metabolic process;0.00421885665463769!GO:0051287;NAD binding;0.00433011227156594!GO:0000082;G1/S transition of mitotic cell cycle;0.00435053580569131!GO:0006695;cholesterol biosynthetic process;0.00452879647849989!GO:0006916;anti-apoptosis;0.00454714736652656!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00472516737573792!GO:0008180;signalosome;0.00490756764471983!GO:0048487;beta-tubulin binding;0.00537541436598266!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00538046064031149!GO:0008017;microtubule binding;0.00543904417364215!GO:0030133;transport vesicle;0.00554553252149407!GO:0016272;prefoldin complex;0.0056103238507092!GO:0019843;rRNA binding;0.00563182869063802!GO:0009161;ribonucleoside monophosphate metabolic process;0.00600909331288575!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.00600909331288575!GO:0000096;sulfur amino acid metabolic process;0.00606844875878653!GO:0031570;DNA integrity checkpoint;0.00607704698326951!GO:0006220;pyrimidine nucleotide metabolic process;0.00614491692273372!GO:0032259;methylation;0.00628104735687971!GO:0048523;negative regulation of cellular process;0.00637766434097368!GO:0016563;transcription activator activity;0.00639592462572582!GO:0006891;intra-Golgi vesicle-mediated transport;0.00646597159436101!GO:0006405;RNA export from nucleus;0.00648336063819599!GO:0003702;RNA polymerase II transcription factor activity;0.00662570633179363!GO:0043022;ribosome binding;0.0067020577662793!GO:0030137;COPI-coated vesicle;0.00699365321114826!GO:0006984;ER-nuclear signaling pathway;0.00705365718793512!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00705365718793512!GO:0015002;heme-copper terminal oxidase activity;0.00705365718793512!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00705365718793512!GO:0004129;cytochrome-c oxidase activity;0.00705365718793512!GO:0000339;RNA cap binding;0.00730820291474736!GO:0003887;DNA-directed DNA polymerase activity;0.00737367348541034!GO:0042802;identical protein binding;0.00737367348541034!GO:0007021;tubulin folding;0.0075992816513091!GO:0032561;guanyl ribonucleotide binding;0.00765570943005457!GO:0019001;guanyl nucleotide binding;0.00765570943005457!GO:0005996;monosaccharide metabolic process;0.00768246575939508!GO:0018196;peptidyl-asparagine modification;0.00771259256082188!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00771259256082188!GO:0000792;heterochromatin;0.00795098530774927!GO:0019318;hexose metabolic process;0.00820768189710244!GO:0006779;porphyrin biosynthetic process;0.00820794431710431!GO:0033014;tetrapyrrole biosynthetic process;0.00820794431710431!GO:0000910;cytokinesis;0.00837900019043315!GO:0006611;protein export from nucleus;0.00839057347910841!GO:0030027;lamellipodium;0.00872748758274098!GO:0000097;sulfur amino acid biosynthetic process;0.00873851904024885!GO:0032981;mitochondrial respiratory chain complex I assembly;0.00893665211585388!GO:0010257;NADH dehydrogenase complex assembly;0.00893665211585388!GO:0033108;mitochondrial respiratory chain complex assembly;0.00893665211585388!GO:0009119;ribonucleoside metabolic process;0.00916487664693764!GO:0005832;chaperonin-containing T-complex;0.0092972591413381!GO:0008276;protein methyltransferase activity;0.00967720093269053!GO:0000819;sister chromatid segregation;0.00986308853051228!GO:0043601;nuclear replisome;0.0101340416050135!GO:0030894;replisome;0.0101340416050135!GO:0019783;small conjugating protein-specific protease activity;0.0103220816371073!GO:0043492;ATPase activity, coupled to movement of substances;0.0103241041426094!GO:0031369;translation initiation factor binding;0.0103720065230911!GO:0016790;thiolester hydrolase activity;0.0103720065230911!GO:0045947;negative regulation of translational initiation;0.0105641523106785!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0106574879725895!GO:0016584;nucleosome positioning;0.0107899631131111!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.010978590340539!GO:0051252;regulation of RNA metabolic process;0.0110167314737077!GO:0006378;mRNA polyadenylation;0.0112104691160179!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0114942873944534!GO:0030145;manganese ion binding;0.0116361309137838!GO:0000070;mitotic sister chromatid segregation;0.0117946414030187!GO:0009303;rRNA transcription;0.0119431962563165!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0123209448384679!GO:0045039;protein import into mitochondrial inner membrane;0.0123209448384679!GO:0016860;intramolecular oxidoreductase activity;0.0123209448384679!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.012605534179454!GO:0030118;clathrin coat;0.0126540557340327!GO:0043189;H4/H2A histone acetyltransferase complex;0.0127107461426176!GO:0006739;NADP metabolic process;0.0132308487131841!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0132961134626055!GO:0000152;nuclear ubiquitin ligase complex;0.0136125103728029!GO:0006778;porphyrin metabolic process;0.0138780132235588!GO:0033013;tetrapyrrole metabolic process;0.0138780132235588!GO:0004843;ubiquitin-specific protease activity;0.0139315835981122!GO:0008097;5S rRNA binding;0.0141882820615852!GO:0065009;regulation of a molecular function;0.0144899755017811!GO:0051320;S phase;0.0145701151690217!GO:0000725;recombinational repair;0.0147776177750945!GO:0000724;double-strand break repair via homologous recombination;0.0147776177750945!GO:0005844;polysome;0.0148590761887847!GO:0043624;cellular protein complex disassembly;0.0149925660388751!GO:0051098;regulation of binding;0.0150728445052724!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0151288067497003!GO:0004177;aminopeptidase activity;0.0151945922045216!GO:0009067;aspartate family amino acid biosynthetic process;0.0153424562639073!GO:0008156;negative regulation of DNA replication;0.0157052632858485!GO:0040029;regulation of gene expression, epigenetic;0.0158508187796783!GO:0032200;telomere organization and biogenesis;0.0161774866260116!GO:0000723;telomere maintenance;0.0161774866260116!GO:0006007;glucose catabolic process;0.0168161620548718!GO:0005663;DNA replication factor C complex;0.0170188457326774!GO:0044450;microtubule organizing center part;0.0172685568875473!GO:0016407;acetyltransferase activity;0.0173520079449456!GO:0006367;transcription initiation from RNA polymerase II promoter;0.017444945402087!GO:0006541;glutamine metabolic process;0.0175628253547166!GO:0006730;one-carbon compound metabolic process;0.0175710209587965!GO:0005869;dynactin complex;0.0175710209587965!GO:0016044;membrane organization and biogenesis;0.0177013163823929!GO:0004221;ubiquitin thiolesterase activity;0.0177451079061521!GO:0035267;NuA4 histone acetyltransferase complex;0.0180168029405746!GO:0006607;NLS-bearing substrate import into nucleus;0.0180447889260087!GO:0005669;transcription factor TFIID complex;0.018338933734808!GO:0006417;regulation of translation;0.018700227382341!GO:0006733;oxidoreduction coenzyme metabolic process;0.0187375412689825!GO:0045045;secretory pathway;0.0187375412689825!GO:0031124;mRNA 3'-end processing;0.0192859162368518!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0192859162368518!GO:0043069;negative regulation of programmed cell death;0.019528722273848!GO:0043488;regulation of mRNA stability;0.019528722273848!GO:0043487;regulation of RNA stability;0.019528722273848!GO:0046966;thyroid hormone receptor binding;0.0201498873551268!GO:0004674;protein serine/threonine kinase activity;0.0202687002392226!GO:0006509;membrane protein ectodomain proteolysis;0.0210355291200029!GO:0033619;membrane protein proteolysis;0.0210355291200029!GO:0043066;negative regulation of apoptosis;0.0213173642992139!GO:0016646;oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor;0.0215331614766353!GO:0051101;regulation of DNA binding;0.0216783447044398!GO:0022890;inorganic cation transmembrane transporter activity;0.0223112480046155!GO:0000123;histone acetyltransferase complex;0.0223417984204181!GO:0031577;spindle checkpoint;0.0224595132182063!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0224595132182063!GO:0030433;ER-associated protein catabolic process;0.0226900251912868!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0226900251912868!GO:0043414;biopolymer methylation;0.0226993607709773!GO:0017134;fibroblast growth factor binding;0.0230995715128948!GO:0007010;cytoskeleton organization and biogenesis;0.0233205412236403!GO:0000077;DNA damage checkpoint;0.0237230294233488!GO:0044454;nuclear chromosome part;0.0237230294233488!GO:0001522;pseudouridine synthesis;0.0237583354905484!GO:0005680;anaphase-promoting complex;0.0240830882895118!GO:0009396;folic acid and derivative biosynthetic process;0.0241341840663204!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.024434034902563!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.024434034902563!GO:0009126;purine nucleoside monophosphate metabolic process;0.024434034902563!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.024434034902563!GO:0009308;amine metabolic process;0.024434034902563!GO:0008190;eukaryotic initiation factor 4E binding;0.0245849336247513!GO:0032984;macromolecular complex disassembly;0.0246062211673853!GO:0006376;mRNA splice site selection;0.0252610808026208!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0252610808026208!GO:0030496;midbody;0.0254189182363031!GO:0044438;microbody part;0.0258223934608679!GO:0044439;peroxisomal part;0.0258223934608679!GO:0000084;S phase of mitotic cell cycle;0.0261610193816117!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0265193592564809!GO:0000178;exosome (RNase complex);0.0267381761323164!GO:0016585;chromatin remodeling complex;0.026914352176114!GO:0016453;C-acetyltransferase activity;0.0269433332194444!GO:0030508;thiol-disulfide exchange intermediate activity;0.0275907239463783!GO:0009066;aspartate family amino acid metabolic process;0.0285331179963494!GO:0004523;ribonuclease H activity;0.0288641859454418!GO:0016417;S-acyltransferase activity;0.0291821555650386!GO:0008022;protein C-terminus binding;0.0295179118777875!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0296386285568717!GO:0022411;cellular component disassembly;0.0301080732835904!GO:0030134;ER to Golgi transport vesicle;0.0302581997126151!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0307779950472422!GO:0030119;AP-type membrane coat adaptor complex;0.0316457561373588!GO:0006118;electron transport;0.0317407460088805!GO:0000287;magnesium ion binding;0.03182708287458!GO:0008632;apoptotic program;0.0318838238210538!GO:0004448;isocitrate dehydrogenase activity;0.0320283136933551!GO:0031901;early endosome membrane;0.0323373622251284!GO:0006783;heme biosynthetic process;0.0323556778947283!GO:0006807;nitrogen compound metabolic process;0.0326687183841848!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0327144072016956!GO:0031529;ruffle organization and biogenesis;0.0328049432781522!GO:0007346;regulation of progression through mitotic cell cycle;0.0336587865155319!GO:0031903;microbody membrane;0.0340926770260558!GO:0005778;peroxisomal membrane;0.0340926770260558!GO:0005881;cytoplasmic microtubule;0.0342257263122509!GO:0030131;clathrin adaptor complex;0.034815304479153!GO:0004659;prenyltransferase activity;0.0349889531004238!GO:0031625;ubiquitin protein ligase binding;0.0355628088501832!GO:0030658;transport vesicle membrane;0.0355835637745834!GO:0005092;GDP-dissociation inhibitor activity;0.0356639785658017!GO:0048519;negative regulation of biological process;0.0357423492400037!GO:0046822;regulation of nucleocytoplasmic transport;0.0360335802585272!GO:0005905;coated pit;0.0361877773303138!GO:0046112;nucleobase biosynthetic process;0.0366475502352497!GO:0009083;branched chain family amino acid catabolic process;0.0371761330531179!GO:0000726;non-recombinational repair;0.0373419794381039!GO:0043241;protein complex disassembly;0.0373419794381039!GO:0007050;cell cycle arrest;0.0380511286193538!GO:0008601;protein phosphatase type 2A regulator activity;0.0384347185850102!GO:0009113;purine base biosynthetic process;0.0385450432622619!GO:0008408;3'-5' exonuclease activity;0.0388471718214091!GO:0003923;GPI-anchor transamidase activity;0.0390404659621544!GO:0016255;attachment of GPI anchor to protein;0.0390404659621544!GO:0042765;GPI-anchor transamidase complex;0.0390404659621544!GO:0003725;double-stranded RNA binding;0.0394751833850867!GO:0046037;GMP metabolic process;0.0394751833850867!GO:0006177;GMP biosynthetic process;0.0394751833850867!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0400882742053243!GO:0000209;protein polyubiquitination;0.040294062558581!GO:0007004;telomere maintenance via telomerase;0.0410081552851525!GO:0032153;cell division site;0.0410196485402426!GO:0032155;cell division site part;0.0410196485402426!GO:0050178;phenylpyruvate tautomerase activity;0.0411302739762529!GO:0031123;RNA 3'-end processing;0.0411302739762529!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.041186063227002!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0415261792129829!GO:0016408;C-acyltransferase activity;0.0417028362223471!GO:0006892;post-Golgi vesicle-mediated transport;0.0421213673591319!GO:0031647;regulation of protein stability;0.0422206400441852!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0422206400441852!GO:0042788;polysomal ribosome;0.0422206400441852!GO:0004549;tRNA-specific ribonuclease activity;0.0425490000459185!GO:0032507;maintenance of cellular protein localization;0.0433099687503442!GO:0042770;DNA damage response, signal transduction;0.0433918155861923!GO:0008538;proteasome activator activity;0.0440518908716144!GO:0005784;translocon complex;0.0444999083766261!GO:0030911;TPR domain binding;0.046107459029621!GO:0005652;nuclear lamina;0.0463217672523645!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0465271397031699!GO:0032039;integrator complex;0.0465271397031699!GO:0031902;late endosome membrane;0.0467656045890385!GO:0004526;ribonuclease P activity;0.0469720219748403!GO:0006301;postreplication repair;0.0470962106103423!GO:0047485;protein N-terminus binding;0.0471288663698278!GO:0030176;integral to endoplasmic reticulum membrane;0.0473086521484647!GO:0031371;ubiquitin conjugating enzyme complex;0.0474707418705544!GO:0008234;cysteine-type peptidase activity;0.0475999132917854!GO:0008536;Ran GTPase binding;0.0481512559068848!GO:0042168;heme metabolic process;0.0488955136786003!GO:0006769;nicotinamide metabolic process;0.0489957258896661!GO:0033170;DNA-protein loading ATPase activity;0.049130625549754!GO:0003689;DNA clamp loader activity;0.049130625549754!GO:0022884;macromolecule transmembrane transporter activity;0.0491613451044088!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0491613451044088!GO:0045892;negative regulation of transcription, DNA-dependent;0.0496529912223035!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0498463021941717 | |||
|sample_id=10774 | |sample_id=10774 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=thorax | |sample_tissue=thorax | ||
|top_motifs=TOPORS:1.93233708865;PAX4:1.81201177638;POU1F1:1.7605381254;PITX1..3:1.68350006909;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58188084132;FOXP1:1.54971737937;CDX1,2,4:1.49326718469;E2F1..5:1.44375690212;NRF1:1.36132282276;CRX:1.35556070523;ZBTB16:1.35333740351;NFY{A,B,C}:1.29733075684;TEF:1.29505171912;YY1:1.19169434228;ZNF143:1.17625804436;FOXD3:1.15865222345;IKZF2:1.15616865249;PBX1:1.08343717498;SOX{8,9,10}:1.07848039849;ELK1,4_GABP{A,B1}:1.05232146183;DBP:1.00410716419;HOXA9_MEIS1:0.998349986515;NANOG:0.949791219122;ARID5B:0.946805052923;AIRE:0.93419848378;NKX6-1,2:0.90109111904;PAX6:0.800465730929;ADNP_IRX_SIX_ZHX:0.777631306636;LHX3,4:0.773802294661;HOX{A5,B5}:0.771715205424;PAX8:0.768292248317;PRRX1,2:0.752560883707;PAX1,9:0.737980739673;ALX1:0.716698035979;OCT4_SOX2{dimer}:0.70155835145;PAX3,7:0.676282032545;ZNF384:0.635560591564;GFI1:0.633235834032;TFDP1:0.629671949453;BREu{core}:0.628124222812;RFX1:0.587358964762;STAT5{A,B}:0.550562898888;CUX2:0.537727322834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.50332147358;RBPJ:0.499851120688;NKX3-1:0.494732613839;POU6F1:0.46770591525;POU3F1..4:0.463934114495;FOXQ1:0.434142794384;SOX5:0.429477777548;bHLH_family:0.418930166171;HOX{A4,D4}:0.41620328976;SOX17:0.389414828776;PRDM1:0.379662537953;EN1,2:0.344763412739;AHR_ARNT_ARNT2:0.320580449213;RFX2..5_RFXANK_RFXAP:0.271449222955;FOXA2:0.24926579663;GATA6:0.240714910401;FOXL1:0.234408002506;ONECUT1,2:0.223277888922;POU2F1..3:0.213955105944;EVI1:0.213117238553;HOX{A6,A7,B6,B7}:0.20740627749;NKX2-3_NKX2-5:0.200448678569;NKX2-2,8:0.183021181002;STAT1,3:0.181952592405;TLX1..3_NFIC{dimer}:0.16893098341;MYB:0.151588246109;ATF4:0.124154187122;CREB1:0.1078690984;HES1:0.104826716329;KLF4:0.0992706532776;PPARG:0.0786009077352;CDC5L:0.0722737469334;ZIC1..3:0.0679178768826;LEF1_TCF7_TCF7L1,2:0.0652996779367;FOXM1:0.0504059809298;NR5A1,2:0.023758795792;GTF2A1,2:0.0213776798882;EGR1..3:-0.00403490363246;POU5F1:-0.0350094065432;MYBL2:-0.0641954247091;UFEwm:-0.0653907925249;ATF5_CREB3:-0.0693974903381;ZFP161:-0.0813027933204;NKX2-1,4:-0.101054208923;RXR{A,B,G}:-0.109707893045;AR:-0.118718727408;MEF2{A,B,C,D}:-0.119126280499;FOXP3:-0.128749195508;HNF1A:-0.143179310256;RUNX1..3:-0.149839821411;PAX5:-0.151178257277;GATA4:-0.162716651286;GFI1B:-0.179681070531;HIC1:-0.180417989159;VSX1,2:-0.184259500526;XBP1:-0.191053009187;REST:-0.196856539003;HNF4A_NR2F1,2:-0.20636620155;DMAP1_NCOR{1,2}_SMARC:-0.207950434614;ELF1,2,4:-0.221170129547;ZBTB6:-0.22556475296;SNAI1..3:-0.226374681891;HSF1,2:-0.265256684278;HBP1_HMGB_SSRP1_UBTF:-0.284124452531;IKZF1:-0.29656469399;FOX{I1,J2}:-0.30234698581;ESRRA:-0.31090335533;HMGA1,2:-0.313833685057;GTF2I:-0.341698229697;BPTF:-0.351922457386;ZEB1:-0.357051805521;SPIB:-0.365767966842;RREB1:-0.368279195288;NFIL3:-0.415362850502;FOX{D1,D2}:-0.426495640081;NR1H4:-0.427223883954;ALX4:-0.451786550769;ATF2:-0.46808875096;CEBPA,B_DDIT3:-0.470204940001;NR6A1:-0.471358351285;ZNF423:-0.480182067686;XCPE1{core}:-0.498199916347;NANOG{mouse}:-0.504042014968;SP1:-0.504061227518;PAX2:-0.505723587336;TEAD1:-0.515550771301;TP53:-0.519594705253;FOSL2:-0.52445520016;NKX3-2:-0.526737705636;PATZ1:-0.52961032877;HAND1,2:-0.534743180492;NFKB1_REL_RELA:-0.536706688929;T:-0.555166844484;SOX2:-0.579192015565;TFAP2B:-0.581799735182;GLI1..3:-0.588372368428;JUN:-0.597097896945;SPI1:-0.615569491359;TAL1_TCF{3,4,12}:-0.628734690832;LMO2:-0.637157853685;MZF1:-0.641884381702;SREBF1,2:-0.642076451479;NFE2:-0.669171988876;MYFfamily:-0.669994323233;GZF1:-0.697017147081;ZNF238:-0.713979097296;SMAD1..7,9:-0.729708106522;ETS1,2:-0.745302413486;FOS_FOS{B,L1}_JUN{B,D}:-0.747411751925;BACH2:-0.756978421607;NHLH1,2:-0.759113634073;EBF1:-0.773874608475;TBP:-0.775382467016;FOX{F1,F2,J1}:-0.777348334814;HLF:-0.778397149323;ATF6:-0.778436965442;MTE{core}:-0.787957974428;FOXO1,3,4:-0.794632180637;MED-1{core}:-0.804962120468;MYOD1:-0.829803470418;HMX1:-0.844860509727;SPZ1:-0.846155858496;NR3C1:-0.856221893964;NFE2L2:-0.877637709594;TLX2:-0.889442155047;MTF1:-0.890829453485;NFE2L1:-0.894383194931;RORA:-0.905841423643;PDX1:-0.926805889912;IRF7:-0.969460012421;IRF1,2:-0.986708344496;FOXN1:-0.986906471961;ZNF148:-1.01664495766;GCM1,2:-1.02925163119;MAZ:-1.03370098536;NFIX:-1.0605028423;ESR1:-1.06457603483;HIF1A:-1.09463482757;TFAP2{A,C}:-1.1685198049;TBX4,5:-1.19261736489;MAFB:-1.23208375814;SRF:-1.23796503304;TGIF1:-1.29287869291;TFAP4:-1.32048171095;NFATC1..3:-1.33294754186;STAT2,4,6:-1.4028341516;EP300:-1.60913036927;RXRA_VDR{dimer}:-1.83355261837;TFCP2:-2.34222650853 | |top_motifs=TOPORS:1.93233708865;PAX4:1.81201177638;POU1F1:1.7605381254;PITX1..3:1.68350006909;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.58188084132;FOXP1:1.54971737937;CDX1,2,4:1.49326718469;E2F1..5:1.44375690212;NRF1:1.36132282276;CRX:1.35556070523;ZBTB16:1.35333740351;NFY{A,B,C}:1.29733075684;TEF:1.29505171912;YY1:1.19169434228;ZNF143:1.17625804436;FOXD3:1.15865222345;IKZF2:1.15616865249;PBX1:1.08343717498;SOX{8,9,10}:1.07848039849;ELK1,4_GABP{A,B1}:1.05232146183;DBP:1.00410716419;HOXA9_MEIS1:0.998349986515;NANOG:0.949791219122;ARID5B:0.946805052923;AIRE:0.93419848378;NKX6-1,2:0.90109111904;PAX6:0.800465730929;ADNP_IRX_SIX_ZHX:0.777631306636;LHX3,4:0.773802294661;HOX{A5,B5}:0.771715205424;PAX8:0.768292248317;PRRX1,2:0.752560883707;PAX1,9:0.737980739673;ALX1:0.716698035979;OCT4_SOX2{dimer}:0.70155835145;PAX3,7:0.676282032545;ZNF384:0.635560591564;GFI1:0.633235834032;TFDP1:0.629671949453;BREu{core}:0.628124222812;RFX1:0.587358964762;STAT5{A,B}:0.550562898888;CUX2:0.537727322834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.50332147358;RBPJ:0.499851120688;NKX3-1:0.494732613839;POU6F1:0.46770591525;POU3F1..4:0.463934114495;FOXQ1:0.434142794384;SOX5:0.429477777548;bHLH_family:0.418930166171;HOX{A4,D4}:0.41620328976;SOX17:0.389414828776;PRDM1:0.379662537953;EN1,2:0.344763412739;AHR_ARNT_ARNT2:0.320580449213;RFX2..5_RFXANK_RFXAP:0.271449222955;FOXA2:0.24926579663;GATA6:0.240714910401;FOXL1:0.234408002506;ONECUT1,2:0.223277888922;POU2F1..3:0.213955105944;EVI1:0.213117238553;HOX{A6,A7,B6,B7}:0.20740627749;NKX2-3_NKX2-5:0.200448678569;NKX2-2,8:0.183021181002;STAT1,3:0.181952592405;TLX1..3_NFIC{dimer}:0.16893098341;MYB:0.151588246109;ATF4:0.124154187122;CREB1:0.1078690984;HES1:0.104826716329;KLF4:0.0992706532776;PPARG:0.0786009077352;CDC5L:0.0722737469334;ZIC1..3:0.0679178768826;LEF1_TCF7_TCF7L1,2:0.0652996779367;FOXM1:0.0504059809298;NR5A1,2:0.023758795792;GTF2A1,2:0.0213776798882;EGR1..3:-0.00403490363246;POU5F1:-0.0350094065432;MYBL2:-0.0641954247091;UFEwm:-0.0653907925249;ATF5_CREB3:-0.0693974903381;ZFP161:-0.0813027933204;NKX2-1,4:-0.101054208923;RXR{A,B,G}:-0.109707893045;AR:-0.118718727408;MEF2{A,B,C,D}:-0.119126280499;FOXP3:-0.128749195508;HNF1A:-0.143179310256;RUNX1..3:-0.149839821411;PAX5:-0.151178257277;GATA4:-0.162716651286;GFI1B:-0.179681070531;HIC1:-0.180417989159;VSX1,2:-0.184259500526;XBP1:-0.191053009187;REST:-0.196856539003;HNF4A_NR2F1,2:-0.20636620155;DMAP1_NCOR{1,2}_SMARC:-0.207950434614;ELF1,2,4:-0.221170129547;ZBTB6:-0.22556475296;SNAI1..3:-0.226374681891;HSF1,2:-0.265256684278;HBP1_HMGB_SSRP1_UBTF:-0.284124452531;IKZF1:-0.29656469399;FOX{I1,J2}:-0.30234698581;ESRRA:-0.31090335533;HMGA1,2:-0.313833685057;GTF2I:-0.341698229697;BPTF:-0.351922457386;ZEB1:-0.357051805521;SPIB:-0.365767966842;RREB1:-0.368279195288;NFIL3:-0.415362850502;FOX{D1,D2}:-0.426495640081;NR1H4:-0.427223883954;ALX4:-0.451786550769;ATF2:-0.46808875096;CEBPA,B_DDIT3:-0.470204940001;NR6A1:-0.471358351285;ZNF423:-0.480182067686;XCPE1{core}:-0.498199916347;NANOG{mouse}:-0.504042014968;SP1:-0.504061227518;PAX2:-0.505723587336;TEAD1:-0.515550771301;TP53:-0.519594705253;FOSL2:-0.52445520016;NKX3-2:-0.526737705636;PATZ1:-0.52961032877;HAND1,2:-0.534743180492;NFKB1_REL_RELA:-0.536706688929;T:-0.555166844484;SOX2:-0.579192015565;TFAP2B:-0.581799735182;GLI1..3:-0.588372368428;JUN:-0.597097896945;SPI1:-0.615569491359;TAL1_TCF{3,4,12}:-0.628734690832;LMO2:-0.637157853685;MZF1:-0.641884381702;SREBF1,2:-0.642076451479;NFE2:-0.669171988876;MYFfamily:-0.669994323233;GZF1:-0.697017147081;ZNF238:-0.713979097296;SMAD1..7,9:-0.729708106522;ETS1,2:-0.745302413486;FOS_FOS{B,L1}_JUN{B,D}:-0.747411751925;BACH2:-0.756978421607;NHLH1,2:-0.759113634073;EBF1:-0.773874608475;TBP:-0.775382467016;FOX{F1,F2,J1}:-0.777348334814;HLF:-0.778397149323;ATF6:-0.778436965442;MTE{core}:-0.787957974428;FOXO1,3,4:-0.794632180637;MED-1{core}:-0.804962120468;MYOD1:-0.829803470418;HMX1:-0.844860509727;SPZ1:-0.846155858496;NR3C1:-0.856221893964;NFE2L2:-0.877637709594;TLX2:-0.889442155047;MTF1:-0.890829453485;NFE2L1:-0.894383194931;RORA:-0.905841423643;PDX1:-0.926805889912;IRF7:-0.969460012421;IRF1,2:-0.986708344496;FOXN1:-0.986906471961;ZNF148:-1.01664495766;GCM1,2:-1.02925163119;MAZ:-1.03370098536;NFIX:-1.0605028423;ESR1:-1.06457603483;HIF1A:-1.09463482757;TFAP2{A,C}:-1.1685198049;TBX4,5:-1.19261736489;MAFB:-1.23208375814;SRF:-1.23796503304;TGIF1:-1.29287869291;TFAP4:-1.32048171095;NFATC1..3:-1.33294754186;STAT2,4,6:-1.4028341516;EP300:-1.60913036927;RXRA_VDR{dimer}:-1.83355261837;TFCP2:-2.34222650853 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10774-110F9;search_select_hide=table117:FF:10774-110F9 | |||
}} | }} | ||
Latest revision as of 15:03, 3 June 2020
| Name: | neuroectodermal tumor cell line:TASK1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11866 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11866
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11866
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.185 |
| 10 | 10 | 0.367 |
| 100 | 100 | 0.0667 |
| 101 | 101 | 0.501 |
| 102 | 102 | 0.836 |
| 103 | 103 | 0.0685 |
| 104 | 104 | 0.641 |
| 105 | 105 | 0.567 |
| 106 | 106 | 1.84871e-4 |
| 107 | 107 | 0.0266 |
| 108 | 108 | 0.699 |
| 109 | 109 | 0.703 |
| 11 | 11 | 0.741 |
| 110 | 110 | 0.419 |
| 111 | 111 | 0.549 |
| 112 | 112 | 0.167 |
| 113 | 113 | 0.172 |
| 114 | 114 | 0.0576 |
| 115 | 115 | 0.319 |
| 116 | 116 | 0.372 |
| 117 | 117 | 0.318 |
| 118 | 118 | 0.447 |
| 119 | 119 | 0.489 |
| 12 | 12 | 0.814 |
| 120 | 120 | 0.962 |
| 121 | 121 | 0.715 |
| 122 | 122 | 0.786 |
| 123 | 123 | 9.44134e-4 |
| 124 | 124 | 0.687 |
| 125 | 125 | 0.766 |
| 126 | 126 | 0.59 |
| 127 | 127 | 0.379 |
| 128 | 128 | 0.0332 |
| 129 | 129 | 0.722 |
| 13 | 13 | 0.0672 |
| 130 | 130 | 0.401 |
| 131 | 131 | 0.147 |
| 132 | 132 | 0.524 |
| 133 | 133 | 0.321 |
| 134 | 134 | 0.372 |
| 135 | 135 | 0.0589 |
| 136 | 136 | 0.868 |
| 137 | 137 | 0.0661 |
| 138 | 138 | 0.964 |
| 139 | 139 | 0.82 |
| 14 | 14 | 0.397 |
| 140 | 140 | 0.572 |
| 141 | 141 | 0.387 |
| 142 | 142 | 0.678 |
| 143 | 143 | 0.0437 |
| 144 | 144 | 0.807 |
| 145 | 145 | 0.877 |
| 146 | 146 | 0.89 |
| 147 | 147 | 0.756 |
| 148 | 148 | 0.165 |
| 149 | 149 | 0.369 |
| 15 | 15 | 0.913 |
| 150 | 150 | 0.578 |
| 151 | 151 | 0.33 |
| 152 | 152 | 0.00507 |
| 153 | 153 | 0.955 |
| 154 | 154 | 0.477 |
| 155 | 155 | 0.678 |
| 156 | 156 | 0.825 |
| 157 | 157 | 0.852 |
| 158 | 158 | 0.264 |
| 159 | 159 | 0.123 |
| 16 | 16 | 0.345 |
| 160 | 160 | 0.426 |
| 161 | 161 | 0.761 |
| 162 | 162 | 0.545 |
| 163 | 163 | 0.0543 |
| 164 | 164 | 0.135 |
| 165 | 165 | 0.559 |
| 166 | 166 | 0.971 |
| 167 | 167 | 0.111 |
| 168 | 168 | 0.0872 |
| 169 | 169 | 0.13 |
| 17 | 17 | 0.518 |
| 18 | 18 | 0.283 |
| 19 | 19 | 0.134 |
| 2 | 2 | 0.0126 |
| 20 | 20 | 0.331 |
| 21 | 21 | 0.75 |
| 22 | 22 | 0.16 |
| 23 | 23 | 3.84795e-4 |
| 24 | 24 | 0.66 |
| 25 | 25 | 0.897 |
| 26 | 26 | 0.677 |
| 27 | 27 | 0.234 |
| 28 | 28 | 0.986 |
| 29 | 29 | 0.508 |
| 3 | 3 | 0.554 |
| 30 | 30 | 0.183 |
| 31 | 31 | 0.555 |
| 32 | 32 | 0.0514 |
| 33 | 33 | 0.958 |
| 34 | 34 | 0.285 |
| 35 | 35 | 0.598 |
| 36 | 36 | 0.072 |
| 37 | 37 | 0.272 |
| 38 | 38 | 0.771 |
| 39 | 39 | 0.398 |
| 4 | 4 | 0.739 |
| 40 | 40 | 0.265 |
| 41 | 41 | 0.147 |
| 42 | 42 | 0.254 |
| 43 | 43 | 0.261 |
| 44 | 44 | 0.719 |
| 45 | 45 | 0.302 |
| 46 | 46 | 0.622 |
| 47 | 47 | 0.317 |
| 48 | 48 | 0.266 |
| 49 | 49 | 0.875 |
| 5 | 5 | 0.45 |
| 50 | 50 | 0.957 |
| 51 | 51 | 0.799 |
| 52 | 52 | 0.0526 |
| 53 | 53 | 0.397 |
| 54 | 54 | 0.48 |
| 55 | 55 | 0.24 |
| 56 | 56 | 0.558 |
| 57 | 57 | 0.124 |
| 58 | 58 | 0.557 |
| 59 | 59 | 0.0369 |
| 6 | 6 | 0.148 |
| 60 | 60 | 0.027 |
| 61 | 61 | 0.825 |
| 62 | 62 | 0.213 |
| 63 | 63 | 0.885 |
| 64 | 64 | 0.298 |
| 65 | 65 | 0.304 |
| 66 | 66 | 0.291 |
| 67 | 67 | 0.644 |
| 68 | 68 | 0.737 |
| 69 | 69 | 0.654 |
| 7 | 7 | 0.51 |
| 70 | 70 | 0.149 |
| 71 | 71 | 0.983 |
| 72 | 72 | 0.225 |
| 73 | 73 | 0.0376 |
| 74 | 74 | 0.543 |
| 75 | 75 | 0.338 |
| 76 | 76 | 0.231 |
| 77 | 77 | 0.228 |
| 78 | 78 | 0.359 |
| 79 | 79 | 0.131 |
| 8 | 8 | 0.484 |
| 80 | 80 | 0.061 |
| 81 | 81 | 0.993 |
| 82 | 82 | 0.484 |
| 83 | 83 | 0.924 |
| 84 | 84 | 0.538 |
| 85 | 85 | 0.00357 |
| 86 | 86 | 0.372 |
| 87 | 87 | 0.998 |
| 88 | 88 | 0.601 |
| 89 | 89 | 0.138 |
| 9 | 9 | 0.0705 |
| 90 | 90 | 0.142 |
| 91 | 91 | 0.3 |
| 92 | 92 | 0.188 |
| 93 | 93 | 0.973 |
| 94 | 94 | 0.606 |
| 95 | 95 | 0.839 |
| 96 | 96 | 0.629 |
| 97 | 97 | 0.538 |
| 98 | 98 | 0.815 |
| 99 | 99 | 0.604 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11866
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:171 neuroectodermal tumor
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0002346 neurectoderm
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0002346 (neurectoderm)
0004121 (ectoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)
0010316 (germ layer / neural crest)
0005291 (embryonic tissue)
0010317 (germ layer / neural crest derived structure)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
