FF:10719-109I8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005717 | |||
|accession_numbers=CAGE;DRX007843;DRR008715;DRZ000140;DRZ001525;DRZ011490;DRZ012875 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3119 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101533,FF:0100729 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101533 | |fonse_cell_line=FF:0101533 | ||
|fonse_cell_line_closure=FF:0101533 | |fonse_cell_line_closure=FF:0101533 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/carcinoid%2520cell%2520line%253aSK-PN-DW.CNhs11846.10719-109I8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10719-109I8 | |id=FF:10719-109I8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100729 | ||
|is_obsolete= | |||
|library_id=CNhs11846 | |||
|library_id_phase_based=2:CNhs11846 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10719 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10719 | |||
|name=carcinoid cell line:SK-PN-DW | |name=carcinoid cell line:SK-PN-DW | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11846,LSID829,release010,COMPLETED | |profile_hcage=CNhs11846,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0.199538312225439,0,0,0,-0.160318030086386,0.272958150885342,-0.10903414981378,0.460418908348104,0,0,0,0,0,0,0,0,0,0,0,0.111129587570977,0,0.0462153018770118,0,0,0,0.16787117316866,0,0.82060267635988,0,0,0.257629364356376,0,0,0,0,0,0,0,0,0,0,0,0,0.129537660752894,0.390585954135238,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0.390585954135238,0,0.199538312225439,0.238749985094715,0,0,0.238398719124223,0,0,0,0,0,0,0,0,0,0,0.111129587570977,0,0,0,0,0,0,0.149035526376998,0.16787117316866,0,0.0249885977817658,0,0,0,-0.0916740972842996,0.0555647937854885,0,0,-0.14777005428565,-0.0191535334677095,0,0.753251567572293,0,0,0.341238539924061,0.402573797551481,0,0,0,0,0,0,0,0,0,0.390585954135238,0,0,0,0,0,0,0,0.0401054815202099,0.111129587570977,0,0,0,0.0462379660503949,0,0,0.272958150885342,0.0555647937854885,0,0 | |||
|repeat_enrich_byname=0.074898425867764,0,0,0,0.341238539924061,0,0,0.706074361325756,0,0.33574234633732,0,0.111129587570977,0.272958150885342,0.753251567572293,0,0,0.0257792755997774,0,0.378619212857729,-0.143515142523472,0,0,0.616929979624679,0,0,0,0,0.111129587570977,0,0,0,0,-0.128119866952565,0,0.0607170359816622,0.199538312225439,0,0,0,0.111129587570977,0.347668411867476,0,0.0871489698040255,-0.0683442610773682,0,0,0,0,0.204672856183675,0,-0.0097498962227635,-0.0827201683234173,0.839001880721144,-0.0391127200155985,0.0554170907897952,0,0,0,-0.215218707436362,-0.0294572268379349,0,0,-0.121779851751874,0.080057412392876,0,0,1.59544910542228,0,-0.378558021710656,-0.22191755541144,0,0.471565290237743,0,0,0,0,0,0.111129587570977,0,0.111129587570977,0.522814061907071,0,0,-0.0574934668214365,0.265859202782796,0,0,0,0,-0.368088690904113,0.131737823935676,0,-0.373286155956567,-0.158389069940069,-0.000733986500044195,0.0647265059081533,0,0.584490341057931,-0.169042412244543,-0.415189104408682,-0.14777005428565,0.0521364628543009,-0.189981719549847,0,-0.168411558994687,0.100607438953833,-0.0426207837480107,-0.402869420091052,0,-0.478156940714812,-0.0726039858936365,0,0,-0.0775089264793031,-0.492185636352088,0,-0.0722101646484357,0.133924969888545,0.189928947814162,0.0896976685472825,-0.263957351849138,-0.174602433521083,-0.0626024338493958,0.0715970591143066,0.0256131405496377,0.0261413132030928,0.14125946634384,0.0261930776843904,0,0,-0.0124013853993345,-0.30286251366109,-0.342868022293337,0,-0.211019310925639,-0.0683442610773682,0.0555647937854885,-0.0169233991797148,0.116794427888526,0,0,0.014070568590353,0,0,0.190167248890735,0.111129587570977,0.199538312225439,0.159914914637486,0.0845475413351517,0.040102589329797,0,0.0854234674508705,-0.299347861960599,-0.297286080352587,0,0.131787305228914,0.0535284147680452,-0.098535840135853,-0.079384044778512,0,0.003279015557387,0.190218199119731,-0.00295283335656782,-0.149436654506396,0.828433241256019,0.0653304623642793,0.021922602700724,-0.153831791042922,-0.398353910654989,0.15239107972361,-0.0881268324752877,0,-0.177470389192624,-0.679498131621524,-0.0204930796412623,0.0309143073868417,0,-0.448645681348828,0,-0.381589080126855,0,-0.320725033766109,-0.0176196895661694,0.0835246873263845,0.177678750274909,0,0.429288132287849,-0.107717460177257,0,-0.0648469548000467,-0.00827981090385315,0.522814061907071,0.122591067550702,-0.0736562821472645,-0.211650427864589,-0.00251038123652375,0.166929504347858,0.112928972880299,0.111129587570977,0,0.317132211930099,0.357371761697376,0,0.0134987798159313,0.165844984140902,0.149035526376998,-0.115971073434934,0.111129587570977,0,0.446759929869205,0.104829133868041,0,-0.215342109682792,0.111129587570977,0.298777248669303,0.0824160048505645,0.059952470108224,-0.108622809454255,0,0.522814061907071,-0.177527765965176,0,0.118806129812126,0,0,-0.0302443510179395,0,0,0,0.390585954135238,0.222011170884234,0,0,0,0,0.072908642319546,0,0,0.54887678932524,0.398418237355845,0.111129587570977,0.216839935782499,0,0,0,0,0,-0.129406115216345,0.0693867925004922,0,-0.0689992031575701,0.108876122837129,0.0765208965490192,0.0555647937854885,0,0,0.0538813032675942,-0.215723402553475,0.187349392040514,0,0.0676756057278077,0.111129587570977,0.0555647937854885,0.199538312225439,0,0.0249885977817658,0,0,0.0555647937854885,0.0997691561127195,-0.057730457053664,0.250997599270907,0,0,0,0.805147595102963,0,0,0,0,-0.0598486397785571,0,0,0,0,0.0501418894359589,0.542457804818477,0,-0.126890258580894,-0.909156501812498,-0.422740272580618,0,0,-0.15021754421891,0,0,-0.060212343006208,0.0804820056502684,0,0.134409173952092,0,0,0,0,0.199538312225439,0,0.121427833937565,0,0,0,0,0,0.111129587570977,0,0,0,0,0,-0.612356895451631,0.107314255566929,0,0,0,0,0,0,0,-0.0241060230789031,0.136365468210319,0.155333949898208,0,0,0,0,0,0.0555647937854885,0,0.431583191606713,0,0,0,0.111129587570977,0,0.238749985094715,0,0.199538312225439,0,0,0.585095470358888,0,0,-0.166232544622537,0,0.068072537722796,0,0,0,0,0.0559589418210228,0,0,0,0,0,0,0.212423260301872,-0.10903414981378,0,0.111129587570977,0,0,0,0.272958150885342,0,0.0609090481312297,0,0.33574234633732,0,0,-0.00275478613800005,0,0,0.522814061907071,0.230945961548164,0,-0.160318030086386,0,0,0,0.0555647937854885,0,0.111129587570977,0.195292977067619,0.0555647937854885,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.667566861151221,0.204197968629767,-0.0148880007586679,0.0417904321512804,0,0,0.0793914895496175,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0.0555647937854885,0,0,0,0,0,0,0,0,0,0.111129587570977,0,0,0,0,0,0,0.343190563094016,0,0,0,0,0,0,0,0.82060267635988,0,0,0.144215421754864,0,0,0.111129587570977,0,0,0,-0.0959329714285499,-0.227655606037659,0.0860157723329498,0.390585954135238,0,0,0.272184748900486,0,0,-0.0234799278324056,0.199538312225439,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111129587570977,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0462153018770118,0,0,0,0,0,0,0,0,0,0,0,0.0555647937854885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=49.20183 | |rna_weight_ug=49.20183 | ||
|sample_age=17 | |sample_age=17 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-2139 | |sample_cell_catalog=CRL-2139 | ||
|sample_cell_line=SK-PN-DW | |sample_cell_line=SK-PN-DW | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.1735685754125e-276!GO:0043227;membrane-bound organelle;1.48186485915255e-250!GO:0043231;intracellular membrane-bound organelle;1.48186485915255e-250!GO:0043226;organelle;7.59523030707556e-249!GO:0043229;intracellular organelle;5.83602457314103e-248!GO:0044422;organelle part;2.43590675192181e-161!GO:0044446;intracellular organelle part;8.55544482034601e-160!GO:0005737;cytoplasm;9.64582378974376e-156!GO:0005634;nucleus;1.52666927272855e-127!GO:0044444;cytoplasmic part;1.41296530060964e-119!GO:0032991;macromolecular complex;1.30119861638283e-117!GO:0044237;cellular metabolic process;1.18759657633453e-109!GO:0044238;primary metabolic process;2.5299883658636e-109!GO:0043170;macromolecule metabolic process;4.95150185871834e-104!GO:0030529;ribonucleoprotein complex;7.74138813933157e-103!GO:0044428;nuclear part;2.74483872387036e-92!GO:0043233;organelle lumen;5.23302271007078e-85!GO:0031974;membrane-enclosed lumen;5.23302271007078e-85!GO:0003723;RNA binding;5.39950637488619e-84!GO:0005739;mitochondrion;1.70657716103664e-72!GO:0010467;gene expression;3.38022885476696e-72!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.02864000675514e-71!GO:0043283;biopolymer metabolic process;3.62231340135193e-68!GO:0005515;protein binding;5.39926236178072e-67!GO:0006396;RNA processing;5.45221023511545e-63!GO:0005840;ribosome;1.49022177716524e-61!GO:0043234;protein complex;5.56768393461038e-58!GO:0016043;cellular component organization and biogenesis;5.47401636782069e-55!GO:0006412;translation;9.7052995066866e-55!GO:0031981;nuclear lumen;1.09026044858705e-54!GO:0003735;structural constituent of ribosome;5.79374689270676e-52!GO:0003676;nucleic acid binding;6.90913932601927e-51!GO:0016071;mRNA metabolic process;4.61098399564506e-47!GO:0044429;mitochondrial part;4.81933139449523e-47!GO:0031090;organelle membrane;2.9750267593911e-46!GO:0031967;organelle envelope;4.48607367010577e-44!GO:0008380;RNA splicing;5.05305330346503e-44!GO:0031975;envelope;1.1245558908546e-43!GO:0033036;macromolecule localization;1.55719568662506e-43!GO:0033279;ribosomal subunit;1.59346562452721e-43!GO:0015031;protein transport;6.8500036120215e-43!GO:0006259;DNA metabolic process;1.10641307163757e-42!GO:0006397;mRNA processing;2.91819470616571e-42!GO:0019538;protein metabolic process;2.66955290528199e-41!GO:0044249;cellular biosynthetic process;1.04023401866293e-40!GO:0043228;non-membrane-bound organelle;4.1727371745328e-40!GO:0043232;intracellular non-membrane-bound organelle;4.1727371745328e-40!GO:0006996;organelle organization and biogenesis;6.62139328480658e-40!GO:0008104;protein localization;1.43853340680538e-39!GO:0016070;RNA metabolic process;2.19983120716328e-39!GO:0045184;establishment of protein localization;6.74857704748149e-39!GO:0009059;macromolecule biosynthetic process;1.37775485209393e-38!GO:0009058;biosynthetic process;3.48945436126139e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.34781059274478e-37!GO:0046907;intracellular transport;3.5018049992985e-36!GO:0044260;cellular macromolecule metabolic process;9.26026943196911e-36!GO:0065003;macromolecular complex assembly;9.73445980826331e-36!GO:0044267;cellular protein metabolic process;2.29628103148334e-35!GO:0005829;cytosol;5.24873333436458e-34!GO:0007049;cell cycle;9.31534528515195e-34!GO:0005654;nucleoplasm;6.41904702022718e-33!GO:0022607;cellular component assembly;2.11031026963722e-32!GO:0005681;spliceosome;7.12570834790412e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.13542076716747e-30!GO:0006974;response to DNA damage stimulus;3.23135427908863e-29!GO:0005740;mitochondrial envelope;3.56434913478456e-29!GO:0006886;intracellular protein transport;1.10377555285882e-28!GO:0051649;establishment of cellular localization;3.25642723050223e-28!GO:0051641;cellular localization;1.18486779944583e-27!GO:0031966;mitochondrial membrane;1.80175325321139e-27!GO:0019866;organelle inner membrane;3.23992712524422e-27!GO:0000278;mitotic cell cycle;3.67259347999331e-27!GO:0000166;nucleotide binding;1.66914719404859e-26!GO:0044445;cytosolic part;2.74579683884192e-26!GO:0044451;nucleoplasm part;1.0807677636603e-25!GO:0022402;cell cycle process;8.11479272199546e-25!GO:0044455;mitochondrial membrane part;8.30753932863598e-25!GO:0005743;mitochondrial inner membrane;1.0591054379979e-24!GO:0006281;DNA repair;1.3896449270019e-24!GO:0005730;nucleolus;2.76747913968133e-24!GO:0016462;pyrophosphatase activity;8.69963129412287e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.1165777916873e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;1.28836059601739e-23!GO:0006119;oxidative phosphorylation;1.67481192154444e-23!GO:0005694;chromosome;3.87975969281629e-23!GO:0015935;small ribosomal subunit;1.43504953289771e-22!GO:0000087;M phase of mitotic cell cycle;2.62852934627302e-22!GO:0015934;large ribosomal subunit;3.91019336261113e-22!GO:0017111;nucleoside-triphosphatase activity;5.13596099607598e-22!GO:0007067;mitosis;9.64377737224196e-22!GO:0022618;protein-RNA complex assembly;1.01597704365353e-21!GO:0031980;mitochondrial lumen;1.7195732935389e-21!GO:0005759;mitochondrial matrix;1.7195732935389e-21!GO:0009719;response to endogenous stimulus;2.61956931257528e-21!GO:0022403;cell cycle phase;5.79435636416149e-21!GO:0006457;protein folding;9.02503599277528e-21!GO:0051301;cell division;7.04819875650205e-20!GO:0044427;chromosomal part;9.0705138920404e-20!GO:0006260;DNA replication;1.92225789688176e-19!GO:0005746;mitochondrial respiratory chain;2.8724697488847e-19!GO:0012505;endomembrane system;3.11966557772076e-19!GO:0016874;ligase activity;3.69546751799477e-19!GO:0051276;chromosome organization and biogenesis;9.00147205961993e-19!GO:0008135;translation factor activity, nucleic acid binding;2.4219405582681e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.88615448039673e-18!GO:0032553;ribonucleotide binding;9.9392169137346e-18!GO:0032555;purine ribonucleotide binding;9.9392169137346e-18!GO:0050136;NADH dehydrogenase (quinone) activity;1.47949803658373e-17!GO:0003954;NADH dehydrogenase activity;1.47949803658373e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.47949803658373e-17!GO:0006512;ubiquitin cycle;1.55959581036252e-17!GO:0000279;M phase;2.23122687929463e-17!GO:0017076;purine nucleotide binding;4.71215941623042e-17!GO:0005761;mitochondrial ribosome;4.90482828286707e-17!GO:0000313;organellar ribosome;4.90482828286707e-17!GO:0042254;ribosome biogenesis and assembly;1.02631440527881e-16!GO:0044265;cellular macromolecule catabolic process;1.03023481684494e-16!GO:0005524;ATP binding;2.73991596345447e-16!GO:0032559;adenyl ribonucleotide binding;3.88539509309176e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.93933272963682e-16!GO:0016887;ATPase activity;1.00926474142747e-15!GO:0006605;protein targeting;1.04107601832442e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.49357259177191e-15!GO:0000375;RNA splicing, via transesterification reactions;1.49357259177191e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.49357259177191e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.54415577656476e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.01484836069011e-15!GO:0005635;nuclear envelope;2.04352623795353e-15!GO:0019941;modification-dependent protein catabolic process;2.56379654665274e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.56379654665274e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.62721089561401e-15!GO:0030554;adenyl nucleotide binding;2.98323466926013e-15!GO:0030964;NADH dehydrogenase complex (quinone);2.98323466926013e-15!GO:0045271;respiratory chain complex I;2.98323466926013e-15!GO:0005747;mitochondrial respiratory chain complex I;2.98323466926013e-15!GO:0042775;organelle ATP synthesis coupled electron transport;3.5250394656026e-15!GO:0042773;ATP synthesis coupled electron transport;3.5250394656026e-15!GO:0044257;cellular protein catabolic process;5.30783391148698e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.02699380855659e-14!GO:0042623;ATPase activity, coupled;1.05130127534421e-14!GO:0031965;nuclear membrane;1.14420327781608e-14!GO:0008134;transcription factor binding;2.52502968088358e-14!GO:0051082;unfolded protein binding;2.84446470239031e-14!GO:0043285;biopolymer catabolic process;2.85525036214777e-14!GO:0044453;nuclear membrane part;4.04789409534876e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;7.49607866549821e-14!GO:0009057;macromolecule catabolic process;8.74089715292827e-14!GO:0006413;translational initiation;1.28976714930288e-13!GO:0003743;translation initiation factor activity;1.62828096902662e-13!GO:0006323;DNA packaging;1.91473518626231e-13!GO:0005643;nuclear pore;2.95366828919997e-13!GO:0019222;regulation of metabolic process;4.76546691811455e-13!GO:0044248;cellular catabolic process;4.87888334380009e-13!GO:0048193;Golgi vesicle transport;5.33255509691439e-13!GO:0048770;pigment granule;7.76038699263193e-13!GO:0042470;melanosome;7.76038699263193e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.22016579841058e-12!GO:0006446;regulation of translational initiation;1.27420255370865e-12!GO:0005794;Golgi apparatus;1.99609044723717e-12!GO:0051186;cofactor metabolic process;2.15172796634238e-12!GO:0000502;proteasome complex (sensu Eukaryota);2.74595306120527e-12!GO:0015630;microtubule cytoskeleton;3.84627367917444e-12!GO:0006399;tRNA metabolic process;3.90587193319664e-12!GO:0016604;nuclear body;4.31895028877528e-12!GO:0004386;helicase activity;5.93946907851338e-12!GO:0006913;nucleocytoplasmic transport;6.14723115024375e-12!GO:0043566;structure-specific DNA binding;7.20263053063671e-12!GO:0006364;rRNA processing;1.11545901478406e-11!GO:0016072;rRNA metabolic process;1.84923845602451e-11!GO:0030163;protein catabolic process;1.92548431184449e-11!GO:0000074;regulation of progression through cell cycle;2.17716526818044e-11!GO:0051726;regulation of cell cycle;2.18687778696815e-11!GO:0051169;nuclear transport;2.19693149010836e-11!GO:0016192;vesicle-mediated transport;2.91573090809479e-11!GO:0006261;DNA-dependent DNA replication;3.07257134082492e-11!GO:0009259;ribonucleotide metabolic process;3.33204007870712e-11!GO:0006403;RNA localization;4.50526477571719e-11!GO:0008026;ATP-dependent helicase activity;5.09336414555601e-11!GO:0043412;biopolymer modification;5.26128344736257e-11!GO:0006163;purine nucleotide metabolic process;5.60648992511887e-11!GO:0050657;nucleic acid transport;5.71214460021323e-11!GO:0051236;establishment of RNA localization;5.71214460021323e-11!GO:0050658;RNA transport;5.71214460021323e-11!GO:0006461;protein complex assembly;5.93840268846652e-11!GO:0008565;protein transporter activity;6.91840652419936e-11!GO:0005783;endoplasmic reticulum;9.15667427786519e-11!GO:0006350;transcription;1.10835821569412e-10!GO:0016568;chromatin modification;1.40250238950842e-10!GO:0046930;pore complex;1.43278939626713e-10!GO:0000775;chromosome, pericentric region;1.78748506254237e-10!GO:0065002;intracellular protein transport across a membrane;1.85866533568337e-10!GO:0050794;regulation of cellular process;2.0282135369501e-10!GO:0031323;regulation of cellular metabolic process;2.53752109250193e-10!GO:0006164;purine nucleotide biosynthetic process;2.98048902597309e-10!GO:0030532;small nuclear ribonucleoprotein complex;2.99396382428888e-10!GO:0016607;nuclear speck;4.8211075197166e-10!GO:0044432;endoplasmic reticulum part;5.30010010190515e-10!GO:0009260;ribonucleotide biosynthetic process;5.48259298581824e-10!GO:0003697;single-stranded DNA binding;5.79964883821268e-10!GO:0006732;coenzyme metabolic process;6.35155412403201e-10!GO:0009150;purine ribonucleotide metabolic process;7.18884494960345e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.50087360830151e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.22575101053393e-09!GO:0017038;protein import;1.69364820046071e-09!GO:0008639;small protein conjugating enzyme activity;1.94792815837701e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.17648280346032e-09!GO:0016779;nucleotidyltransferase activity;2.18257710286805e-09!GO:0006366;transcription from RNA polymerase II promoter;2.28629736599313e-09!GO:0006464;protein modification process;2.496102296507e-09!GO:0004842;ubiquitin-protein ligase activity;3.4465453563092e-09!GO:0009055;electron carrier activity;3.83712492483172e-09!GO:0009152;purine ribonucleotide biosynthetic process;3.91686404270302e-09!GO:0019787;small conjugating protein ligase activity;4.4352945580079e-09!GO:0051028;mRNA transport;4.53966334595781e-09!GO:0010468;regulation of gene expression;6.84680285336633e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.53718835363244e-09!GO:0004812;aminoacyl-tRNA ligase activity;7.53718835363244e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.53718835363244e-09!GO:0000785;chromatin;8.12360092466065e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.56262265493741e-09!GO:0043687;post-translational protein modification;1.03120416013789e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.24464239100663e-08!GO:0043038;amino acid activation;1.54447015679872e-08!GO:0006418;tRNA aminoacylation for protein translation;1.54447015679872e-08!GO:0043039;tRNA aminoacylation;1.54447015679872e-08!GO:0003712;transcription cofactor activity;1.54447015679872e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.64674798841057e-08!GO:0009141;nucleoside triphosphate metabolic process;1.94041349312637e-08!GO:0006333;chromatin assembly or disassembly;2.60711189467751e-08!GO:0051329;interphase of mitotic cell cycle;2.69465867237028e-08!GO:0019829;cation-transporting ATPase activity;2.88855191698092e-08!GO:0032774;RNA biosynthetic process;3.70105181335274e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.87429069025911e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.87429069025911e-08!GO:0005819;spindle;3.88902046360195e-08!GO:0005667;transcription factor complex;4.36446112110734e-08!GO:0065004;protein-DNA complex assembly;4.53702995595367e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.78440333193143e-08!GO:0016881;acid-amino acid ligase activity;4.87539337009281e-08!GO:0006351;transcription, DNA-dependent;5.36475766617247e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.49100422345041e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.49100422345041e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.18484123386051e-08!GO:0003899;DNA-directed RNA polymerase activity;7.48563114910472e-08!GO:0015986;ATP synthesis coupled proton transport;8.65599750964385e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.65599750964385e-08!GO:0000245;spliceosome assembly;9.9392823755094e-08!GO:0007017;microtubule-based process;1.29884030738008e-07!GO:0050789;regulation of biological process;1.31170669483174e-07!GO:0051188;cofactor biosynthetic process;1.3260713565156e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.3260713565156e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.3260713565156e-07!GO:0007051;spindle organization and biogenesis;1.4566758551892e-07!GO:0048475;coated membrane;1.5968318423827e-07!GO:0030117;membrane coat;1.5968318423827e-07!GO:0005657;replication fork;1.59880619403579e-07!GO:0009060;aerobic respiration;1.94748113615395e-07!GO:0005813;centrosome;2.02505803864456e-07!GO:0016740;transferase activity;2.58653970219109e-07!GO:0005793;ER-Golgi intermediate compartment;2.66133390223954e-07!GO:0046034;ATP metabolic process;2.90562662796727e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.2628259709913e-07!GO:0051325;interphase;3.69346137335946e-07!GO:0045333;cellular respiration;3.71306397170979e-07!GO:0045259;proton-transporting ATP synthase complex;4.25688878781794e-07!GO:0005789;endoplasmic reticulum membrane;5.10574175644508e-07!GO:0009056;catabolic process;5.31479916410615e-07!GO:0045449;regulation of transcription;5.6272389037989e-07!GO:0000226;microtubule cytoskeleton organization and biogenesis;5.71805287294593e-07!GO:0032446;protein modification by small protein conjugation;5.87054584863301e-07!GO:0000075;cell cycle checkpoint;5.87054584863301e-07!GO:0005815;microtubule organizing center;6.08457702860771e-07!GO:0043623;cellular protein complex assembly;6.33228758391844e-07!GO:0003677;DNA binding;6.86920571326633e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.98190320437974e-07!GO:0044431;Golgi apparatus part;7.95998176134634e-07!GO:0008094;DNA-dependent ATPase activity;8.47446362398131e-07!GO:0006754;ATP biosynthetic process;8.72090334645457e-07!GO:0006753;nucleoside phosphate metabolic process;8.72090334645457e-07!GO:0006099;tricarboxylic acid cycle;9.51588135660999e-07!GO:0046356;acetyl-CoA catabolic process;9.51588135660999e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.01186314401694e-06!GO:0031324;negative regulation of cellular metabolic process;1.07230299121899e-06!GO:0009108;coenzyme biosynthetic process;1.16038287111618e-06!GO:0005768;endosome;1.2167136669626e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.25140251164463e-06!GO:0016567;protein ubiquitination;1.26772238743074e-06!GO:0007005;mitochondrion organization and biogenesis;1.39721398585841e-06!GO:0051170;nuclear import;1.57589650775878e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.59414428104863e-06!GO:0030120;vesicle coat;1.60502560798724e-06!GO:0030662;coated vesicle membrane;1.60502560798724e-06!GO:0009892;negative regulation of metabolic process;1.85217140375987e-06!GO:0006606;protein import into nucleus;2.20676226778218e-06!GO:0009117;nucleotide metabolic process;2.216281904015e-06!GO:0003690;double-stranded DNA binding;2.3720663039254e-06!GO:0016853;isomerase activity;2.66947437067295e-06!GO:0000151;ubiquitin ligase complex;3.14677516230436e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.21943243086578e-06!GO:0000314;organellar small ribosomal subunit;3.30997047344241e-06!GO:0005763;mitochondrial small ribosomal subunit;3.30997047344241e-06!GO:0005874;microtubule;3.33972740647178e-06!GO:0006084;acetyl-CoA metabolic process;3.41712204461462e-06!GO:0016564;transcription repressor activity;4.39471712165998e-06!GO:0031988;membrane-bound vesicle;4.63854570181568e-06!GO:0045045;secretory pathway;5.54889001492498e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.05305965322549e-06!GO:0051246;regulation of protein metabolic process;7.51165463185039e-06!GO:0012501;programmed cell death;8.14173284682178e-06!GO:0044440;endosomal part;8.70986766010606e-06!GO:0010008;endosome membrane;8.70986766010606e-06!GO:0016023;cytoplasmic membrane-bound vesicle;8.7181847623649e-06!GO:0009109;coenzyme catabolic process;9.26857179218952e-06!GO:0006355;regulation of transcription, DNA-dependent;9.87258305018503e-06!GO:0005762;mitochondrial large ribosomal subunit;1.07374616175298e-05!GO:0000315;organellar large ribosomal subunit;1.07374616175298e-05!GO:0006383;transcription from RNA polymerase III promoter;1.07420037092429e-05!GO:0015631;tubulin binding;1.12022875134185e-05!GO:0005798;Golgi-associated vesicle;1.13694213057896e-05!GO:0006302;double-strand break repair;1.1768021231337e-05!GO:0003682;chromatin binding;1.34765610698743e-05!GO:0006915;apoptosis;1.47729010446657e-05!GO:0019899;enzyme binding;1.49658003323497e-05!GO:0006613;cotranslational protein targeting to membrane;1.55037792806898e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.6085054909067e-05!GO:0007010;cytoskeleton organization and biogenesis;1.73138815493591e-05!GO:0031982;vesicle;1.76304909658393e-05!GO:0006793;phosphorus metabolic process;1.76352468966298e-05!GO:0006796;phosphate metabolic process;1.76352468966298e-05!GO:0000139;Golgi membrane;1.78859670185421e-05!GO:0003924;GTPase activity;1.89422251085243e-05!GO:0003724;RNA helicase activity;1.9693114640348e-05!GO:0003684;damaged DNA binding;1.97172422519788e-05!GO:0006752;group transfer coenzyme metabolic process;2.07490074527089e-05!GO:0003678;DNA helicase activity;2.88129309800438e-05!GO:0051052;regulation of DNA metabolic process;3.05474778264887e-05!GO:0016310;phosphorylation;3.0550129426907e-05!GO:0000776;kinetochore;3.13550635338052e-05!GO:0031410;cytoplasmic vesicle;3.57431899961054e-05!GO:0051187;cofactor catabolic process;3.63385679267425e-05!GO:0008219;cell death;3.79026717894068e-05!GO:0016265;death;3.79026717894068e-05!GO:0044452;nucleolar part;4.21650951708355e-05!GO:0007059;chromosome segregation;4.25739911294299e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.26476786226733e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.28205742257691e-05!GO:0016859;cis-trans isomerase activity;6.33380772858935e-05!GO:0008168;methyltransferase activity;6.52998747834645e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;6.85417213712419e-05!GO:0016741;transferase activity, transferring one-carbon groups;6.85417213712419e-05!GO:0016363;nuclear matrix;7.29172279509639e-05!GO:0008033;tRNA processing;8.22132588109881e-05!GO:0006414;translational elongation;8.29973860079643e-05!GO:0003729;mRNA binding;8.36043750303607e-05!GO:0051168;nuclear export;8.43669602023282e-05!GO:0016481;negative regulation of transcription;9.36462036187733e-05!GO:0045786;negative regulation of progression through cell cycle;9.52163789378808e-05!GO:0003714;transcription corepressor activity;9.72030729149549e-05!GO:0008654;phospholipid biosynthetic process;0.000100318536470481!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000105516214031371!GO:0030880;RNA polymerase complex;0.000116670491395113!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000120319136841236!GO:0007088;regulation of mitosis;0.000120497726377062!GO:0031497;chromatin assembly;0.000121269106191552!GO:0009165;nucleotide biosynthetic process;0.00012472591655392!GO:0043021;ribonucleoprotein binding;0.000141947020685433!GO:0006310;DNA recombination;0.000153203443751018!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000155210070355145!GO:0006334;nucleosome assembly;0.000187368926558015!GO:0016787;hydrolase activity;0.000190178782397888!GO:0051427;hormone receptor binding;0.000192485435217147!GO:0030867;rough endoplasmic reticulum membrane;0.000194584236628247!GO:0006612;protein targeting to membrane;0.000195599727940299!GO:0005788;endoplasmic reticulum lumen;0.00019986287342818!GO:0007052;mitotic spindle organization and biogenesis;0.000207315669248275!GO:0030133;transport vesicle;0.000212706576251432!GO:0048471;perinuclear region of cytoplasm;0.000212767442921503!GO:0008017;microtubule binding;0.000214787373811348!GO:0005770;late endosome;0.000232318927043017!GO:0048523;negative regulation of cellular process;0.000255973917879716!GO:0032508;DNA duplex unwinding;0.000256489692106919!GO:0032392;DNA geometric change;0.000256489692106919!GO:0007093;mitotic cell cycle checkpoint;0.000257771277296607!GO:0005839;proteasome core complex (sensu Eukaryota);0.000268827558096598!GO:0006626;protein targeting to mitochondrion;0.000278101408628787!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000304433448405943!GO:0000428;DNA-directed RNA polymerase complex;0.000304433448405943!GO:0043681;protein import into mitochondrion;0.000311571886201339!GO:0042802;identical protein binding;0.000317057211029646!GO:0000059;protein import into nucleus, docking;0.000332241450984818!GO:0035257;nuclear hormone receptor binding;0.000364911564745483!GO:0045454;cell redox homeostasis;0.000394674662762425!GO:0006352;transcription initiation;0.000412604385386874!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000438312774012061!GO:0015399;primary active transmembrane transporter activity;0.000438312774012061!GO:0005684;U2-dependent spliceosome;0.000481834265993822!GO:0008186;RNA-dependent ATPase activity;0.000487363840091858!GO:0008250;oligosaccharyl transferase complex;0.000503830901363442!GO:0003713;transcription coactivator activity;0.000523576324363095!GO:0006284;base-excision repair;0.000526934300901788!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000548843530554479!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000548843530554479!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000548843530554479!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000575434958272774!GO:0005769;early endosome;0.000587648846556704!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000638082146812078!GO:0005048;signal sequence binding;0.000650257335970151!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000703558416726959!GO:0051539;4 iron, 4 sulfur cluster binding;0.000725662103200932!GO:0004527;exonuclease activity;0.000741259295945949!GO:0006275;regulation of DNA replication;0.000751185084484796!GO:0015980;energy derivation by oxidation of organic compounds;0.000751404092256645!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00076627716654401!GO:0004518;nuclease activity;0.000776898839077085!GO:0006268;DNA unwinding during replication;0.000785900855771635!GO:0000082;G1/S transition of mitotic cell cycle;0.000805863451904037!GO:0006839;mitochondrial transport;0.00081245627790662!GO:0009112;nucleobase metabolic process;0.000826553107794338!GO:0051920;peroxiredoxin activity;0.00084431204653366!GO:0031124;mRNA 3'-end processing;0.00084431204653366!GO:0004298;threonine endopeptidase activity;0.000854949761360775!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000855834166942773!GO:0007006;mitochondrial membrane organization and biogenesis;0.000862947103099996!GO:0043284;biopolymer biosynthetic process;0.00094093980290166!GO:0051540;metal cluster binding;0.000954160505254148!GO:0051536;iron-sulfur cluster binding;0.000954160505254148!GO:0005875;microtubule associated complex;0.00097015058777076!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0010053992911686!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0010053992911686!GO:0032940;secretion by cell;0.00109184744601541!GO:0005876;spindle microtubule;0.00117635889035292!GO:0005741;mitochondrial outer membrane;0.00124437814565068!GO:0006144;purine base metabolic process;0.00126484198103279!GO:0031072;heat shock protein binding;0.00127895223681515!GO:0032259;methylation;0.00132646681414749!GO:0004576;oligosaccharyl transferase activity;0.0013641215743686!GO:0051087;chaperone binding;0.00137165554414328!GO:0030658;transport vesicle membrane;0.00139096044178645!GO:0005791;rough endoplasmic reticulum;0.00140251280696303!GO:0004004;ATP-dependent RNA helicase activity;0.00140923903083202!GO:0016272;prefoldin complex;0.00143365197387452!GO:0030118;clathrin coat;0.00143907163802688!GO:0000922;spindle pole;0.001446584795049!GO:0019843;rRNA binding;0.00148198573156141!GO:0006401;RNA catabolic process;0.0014845145036323!GO:0048519;negative regulation of biological process;0.00152978406317504!GO:0000725;recombinational repair;0.00155685479561501!GO:0000724;double-strand break repair via homologous recombination;0.00155685479561501!GO:0009303;rRNA transcription;0.00163896392137925!GO:0006289;nucleotide-excision repair;0.00172190487520283!GO:0000792;heterochromatin;0.0017286226432564!GO:0006611;protein export from nucleus;0.00175151284638368!GO:0019867;outer membrane;0.00179112433030415!GO:0005525;GTP binding;0.00181251743709515!GO:0004003;ATP-dependent DNA helicase activity;0.0018413619386247!GO:0031968;organelle outer membrane;0.0019823438075301!GO:0065007;biological regulation;0.00202476034304433!GO:0007050;cell cycle arrest;0.00208189159692687!GO:0000819;sister chromatid segregation;0.00212770674505482!GO:0018196;peptidyl-asparagine modification;0.00213041178542386!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00213041178542386!GO:0031970;organelle envelope lumen;0.0021562523536038!GO:0003746;translation elongation factor activity;0.0021562523536038!GO:0000228;nuclear chromosome;0.00217399236533658!GO:0000070;mitotic sister chromatid segregation;0.00222061076852156!GO:0043596;nuclear replication fork;0.00236167289782862!GO:0030660;Golgi-associated vesicle membrane;0.00236501397895946!GO:0016563;transcription activator activity;0.00239363956844104!GO:0000910;cytokinesis;0.00256741257061396!GO:0005885;Arp2/3 protein complex;0.00264863857968634!GO:0006338;chromatin remodeling;0.00269476435802356!GO:0006402;mRNA catabolic process;0.00270267791817836!GO:0005637;nuclear inner membrane;0.00277932662046242!GO:0048500;signal recognition particle;0.00281952900633033!GO:0006378;mRNA polyadenylation;0.00283667509698895!GO:0003711;transcription elongation regulator activity;0.0028856657633619!GO:0051789;response to protein stimulus;0.00292179206129825!GO:0006986;response to unfolded protein;0.00292179206129825!GO:0050178;phenylpyruvate tautomerase activity;0.00298034473150898!GO:0005905;coated pit;0.0030677290021818!GO:0006270;DNA replication initiation;0.00318412356990234!GO:0043414;biopolymer methylation;0.00318412356990234!GO:0016251;general RNA polymerase II transcription factor activity;0.00323258272576166!GO:0006091;generation of precursor metabolites and energy;0.00335318928663801!GO:0009116;nucleoside metabolic process;0.00390132773282913!GO:0006595;polyamine metabolic process;0.00390132773282913!GO:0031570;DNA integrity checkpoint;0.00406895006397735!GO:0033116;ER-Golgi intermediate compartment membrane;0.00420282386757761!GO:0000339;RNA cap binding;0.00432327695636715!GO:0008022;protein C-terminus binding;0.0043543901334597!GO:0006730;one-carbon compound metabolic process;0.00437963174254616!GO:0031123;RNA 3'-end processing;0.00437963174254616!GO:0008139;nuclear localization sequence binding;0.00439605433046751!GO:0046112;nucleobase biosynthetic process;0.00448818826831004!GO:0006818;hydrogen transport;0.00470120024593358!GO:0008312;7S RNA binding;0.00471744635086467!GO:0016491;oxidoreductase activity;0.00473492946734482!GO:0043492;ATPase activity, coupled to movement of substances;0.0048666695959194!GO:0015992;proton transport;0.00499305983660584!GO:0030134;ER to Golgi transport vesicle;0.00499305983660584!GO:0051053;negative regulation of DNA metabolic process;0.00508744028035062!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00530153512779821!GO:0006916;anti-apoptosis;0.00530153512779821!GO:0003702;RNA polymerase II transcription factor activity;0.00554607372165277!GO:0044450;microtubule organizing center part;0.00554721343294179!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00558652904991316!GO:0046474;glycerophospholipid biosynthetic process;0.00573820278616717!GO:0031252;leading edge;0.00574964836073743!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00607034667406617!GO:0045892;negative regulation of transcription, DNA-dependent;0.00628303403296735!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0064304508878106!GO:0005669;transcription factor TFIID complex;0.00646499902481247!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00652076639637619!GO:0045947;negative regulation of translational initiation;0.00657192069680195!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.006651208569407!GO:0045047;protein targeting to ER;0.006651208569407!GO:0006892;post-Golgi vesicle-mediated transport;0.0067769668945198!GO:0000049;tRNA binding;0.00683011529974601!GO:0008180;signalosome;0.0068641897140341!GO:0030127;COPII vesicle coat;0.0070686631880618!GO:0012507;ER to Golgi transport vesicle membrane;0.0070686631880618!GO:0005869;dynactin complex;0.00713852155825808!GO:0046489;phosphoinositide biosynthetic process;0.00718813174033137!GO:0004674;protein serine/threonine kinase activity;0.00720595219248991!GO:0030119;AP-type membrane coat adaptor complex;0.00720595219248991!GO:0051252;regulation of RNA metabolic process;0.00729255010271234!GO:0048487;beta-tubulin binding;0.00762630121833403!GO:0005832;chaperonin-containing T-complex;0.00764799926540612!GO:0005758;mitochondrial intermembrane space;0.00765982399818294!GO:0043022;ribosome binding;0.00788178120538301!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00801731376752422!GO:0030663;COPI coated vesicle membrane;0.00821234128502496!GO:0030126;COPI vesicle coat;0.00821234128502496!GO:0012506;vesicle membrane;0.00828495121742083!GO:0006405;RNA export from nucleus;0.00830166944431312!GO:0008276;protein methyltransferase activity;0.00838191956252524!GO:0043601;nuclear replisome;0.00838962004382794!GO:0030894;replisome;0.00838962004382794!GO:0032561;guanyl ribonucleotide binding;0.00874180541610124!GO:0019001;guanyl nucleotide binding;0.00874180541610124!GO:0043069;negative regulation of programmed cell death;0.0088628676653466!GO:0000152;nuclear ubiquitin ligase complex;0.00890494687991462!GO:0042770;DNA damage response, signal transduction;0.00900656744765044!GO:0032200;telomere organization and biogenesis;0.00933806301283484!GO:0000723;telomere maintenance;0.00933806301283484!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0094866073512093!GO:0015002;heme-copper terminal oxidase activity;0.0094866073512093!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0094866073512093!GO:0004129;cytochrome-c oxidase activity;0.0094866073512093!GO:0043066;negative regulation of apoptosis;0.00974118686429808!GO:0009124;nucleoside monophosphate biosynthetic process;0.00976722743456543!GO:0009123;nucleoside monophosphate metabolic process;0.00976722743456543!GO:0006891;intra-Golgi vesicle-mediated transport;0.00977220678221941!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00977220678221941!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00989901469643578!GO:0043624;cellular protein complex disassembly;0.00997442888199667!GO:0006220;pyrimidine nucleotide metabolic process;0.0102209318546663!GO:0006607;NLS-bearing substrate import into nucleus;0.0107770696002234!GO:0030131;clathrin adaptor complex;0.0117637206409292!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0117895340789653!GO:0031901;early endosome membrane;0.0120594569420235!GO:0005844;polysome;0.0120713760777562!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0123655948399073!GO:0044262;cellular carbohydrate metabolic process;0.0124286133716093!GO:0007018;microtubule-based movement;0.0126536038207248!GO:0044433;cytoplasmic vesicle part;0.0129708322273504!GO:0007021;tubulin folding;0.0130498512275028!GO:0046128;purine ribonucleoside metabolic process;0.0131427888471815!GO:0042278;purine nucleoside metabolic process;0.0131427888471815!GO:0005663;DNA replication factor C complex;0.013481676258866!GO:0030027;lamellipodium;0.0137412387064863!GO:0019783;small conjugating protein-specific protease activity;0.0138963770431058!GO:0044454;nuclear chromosome part;0.0138963770431058!GO:0043189;H4/H2A histone acetyltransferase complex;0.0141080436104525!GO:0046467;membrane lipid biosynthetic process;0.0141155388924197!GO:0065009;regulation of a molecular function;0.0141978352698376!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0142238768808401!GO:0010257;NADH dehydrogenase complex assembly;0.0142238768808401!GO:0033108;mitochondrial respiratory chain complex assembly;0.0142238768808401!GO:0000084;S phase of mitotic cell cycle;0.0143939218362311!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0143939218362311!GO:0030137;COPI-coated vesicle;0.0144313864758659!GO:0006007;glucose catabolic process;0.0149057037982311!GO:0042981;regulation of apoptosis;0.0149387214981727!GO:0043067;regulation of programmed cell death;0.0151667342564701!GO:0040029;regulation of gene expression, epigenetic;0.0152100679151277!GO:0000077;DNA damage checkpoint;0.0154508679556963!GO:0042393;histone binding;0.0156582805975452!GO:0000096;sulfur amino acid metabolic process;0.0156621394180171!GO:0008652;amino acid biosynthetic process;0.0157746248109873!GO:0000178;exosome (RNase complex);0.0167287057384245!GO:0035267;NuA4 histone acetyltransferase complex;0.0167725634727642!GO:0000086;G2/M transition of mitotic cell cycle;0.0169479116573417!GO:0006376;mRNA splice site selection;0.016967669728411!GO:0000389;nuclear mRNA 3'-splice site recognition;0.016967669728411!GO:0031577;spindle checkpoint;0.017160733755133!GO:0051320;S phase;0.0172893020407125!GO:0031371;ubiquitin conjugating enzyme complex;0.0172983649602675!GO:0031902;late endosome membrane;0.0173740061261017!GO:0008408;3'-5' exonuclease activity;0.0173795772144063!GO:0005680;anaphase-promoting complex;0.01753091055883!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0176548684448607!GO:0046966;thyroid hormone receptor binding;0.0180006010546369!GO:0006301;postreplication repair;0.018429963163161!GO:0006984;ER-nuclear signaling pathway;0.0185565256514225!GO:0004843;ubiquitin-specific protease activity;0.0186023148310175!GO:0003725;double-stranded RNA binding;0.0189669673853819!GO:0022890;inorganic cation transmembrane transporter activity;0.0189988941782875!GO:0008156;negative regulation of DNA replication;0.019001204716446!GO:0004532;exoribonuclease activity;0.0191094065786146!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0191094065786146!GO:0051128;regulation of cellular component organization and biogenesis;0.0191094065786146!GO:0043631;RNA polyadenylation;0.019292963620178!GO:0003756;protein disulfide isomerase activity;0.0197933044597063!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0197933044597063!GO:0022406;membrane docking;0.0199600186248429!GO:0048278;vesicle docking;0.0199600186248429!GO:0051287;NAD binding;0.0199600186248429!GO:0009161;ribonucleoside monophosphate metabolic process;0.0199600186248429!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0199600186248429!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0202751450695948!GO:0006541;glutamine metabolic process;0.0206451200896178!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0206806426858943!GO:0043130;ubiquitin binding;0.0212629849879855!GO:0032182;small conjugating protein binding;0.0212629849879855!GO:0003887;DNA-directed DNA polymerase activity;0.0215705296898859!GO:0030659;cytoplasmic vesicle membrane;0.021872981424897!GO:0000209;protein polyubiquitination;0.02207819043856!GO:0006520;amino acid metabolic process;0.0221919189499442!GO:0032984;macromolecular complex disassembly;0.0221919189499442!GO:0009113;purine base biosynthetic process;0.0223167103670981!GO:0000123;histone acetyltransferase complex;0.0229518784399322!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0249855584432884!GO:0000287;magnesium ion binding;0.025072605191213!GO:0016790;thiolester hydrolase activity;0.0253771422092942!GO:0006497;protein amino acid lipidation;0.0253771422092942!GO:0005652;nuclear lamina;0.02558871731386!GO:0004221;ubiquitin thiolesterase activity;0.0257795218348269!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0259053123411047!GO:0009451;RNA modification;0.0259591400743906!GO:0017166;vinculin binding;0.026119511942841!GO:0043241;protein complex disassembly;0.0265975209973081!GO:0000790;nuclear chromatin;0.0266134409812879!GO:0005881;cytoplasmic microtubule;0.0269661455108165!GO:0008270;zinc ion binding;0.0275532332522251!GO:0030140;trans-Golgi network transport vesicle;0.0275848114550059!GO:0019900;kinase binding;0.0278204478093893!GO:0008097;5S rRNA binding;0.0280846241630555!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0281293627715896!GO:0030132;clathrin coat of coated pit;0.0286070898313542!GO:0005784;translocon complex;0.0286772569170021!GO:0006904;vesicle docking during exocytosis;0.0290117052869362!GO:0007019;microtubule depolymerization;0.0292186705313207!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0296653497508086!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.030226328495815!GO:0005996;monosaccharide metabolic process;0.0307128997306126!GO:0019318;hexose metabolic process;0.0310841867797086!GO:0042769;DNA damage response, detection of DNA damage;0.0310841867797086!GO:0030911;TPR domain binding;0.0312766516088855!GO:0005092;GDP-dissociation inhibitor activity;0.0318421684292371!GO:0016044;membrane organization and biogenesis;0.0318421684292371!GO:0000726;non-recombinational repair;0.0318421684292371!GO:0000118;histone deacetylase complex;0.0323424364167599!GO:0046483;heterocycle metabolic process;0.0325308863003368!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0325308863003368!GO:0030125;clathrin vesicle coat;0.0325308863003368!GO:0030665;clathrin coated vesicle membrane;0.0325308863003368!GO:0006506;GPI anchor biosynthetic process;0.032914198680155!GO:0009081;branched chain family amino acid metabolic process;0.0334805030055179!GO:0008536;Ran GTPase binding;0.0338015822614354!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0339780622511052!GO:0006505;GPI anchor metabolic process;0.0346265407472445!GO:0035258;steroid hormone receptor binding;0.0357228367660108!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0357495689209357!GO:0019901;protein kinase binding;0.0364696356753483!GO:0000781;chromosome, telomeric region;0.0365116823064277!GO:0043488;regulation of mRNA stability;0.0374412935676138!GO:0043487;regulation of RNA stability;0.0374412935676138!GO:0006733;oxidoreduction coenzyme metabolic process;0.037931849723322!GO:0030508;thiol-disulfide exchange intermediate activity;0.038015797740369!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0384123413040221!GO:0016126;sterol biosynthetic process;0.0391218298182589!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0391279133140602!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0395401872706929!GO:0022411;cellular component disassembly;0.0395401872706929!GO:0008213;protein amino acid alkylation;0.0395401872706929!GO:0006479;protein amino acid methylation;0.0395401872706929!GO:0006695;cholesterol biosynthetic process;0.0397535776303114!GO:0004239;methionyl aminopeptidase activity;0.0405109171659491!GO:0006400;tRNA modification;0.0407211991504437!GO:0008287;protein serine/threonine phosphatase complex;0.0413077470080499!GO:0032405;MutLalpha complex binding;0.0414593824843305!GO:0016835;carbon-oxygen lyase activity;0.041896805324942!GO:0030496;midbody;0.0423119968201176!GO:0042158;lipoprotein biosynthetic process;0.0425599105064778!GO:0008610;lipid biosynthetic process;0.0425846381973762!GO:0043433;negative regulation of transcription factor activity;0.0425846381973762!GO:0030176;integral to endoplasmic reticulum membrane;0.0426497904017265!GO:0030262;apoptotic nuclear changes;0.0426951192806373!GO:0033170;DNA-protein loading ATPase activity;0.0436357436641107!GO:0003689;DNA clamp loader activity;0.0436357436641107!GO:0007004;telomere maintenance via telomerase;0.0448981680456658!GO:0022884;macromolecule transmembrane transporter activity;0.0448981680456658!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0448981680456658!GO:0004523;ribonuclease H activity;0.0453697386916281!GO:0004347;glucose-6-phosphate isomerase activity;0.0462234597981204!GO:0006308;DNA catabolic process;0.0464944293642527!GO:0009119;ribonucleoside metabolic process;0.0473858789783268!GO:0051101;regulation of DNA binding;0.0474296562514077!GO:0030145;manganese ion binding;0.0474296562514077!GO:0048468;cell development;0.0476507277717195!GO:0005666;DNA-directed RNA polymerase III complex;0.0480966767337051!GO:0046365;monosaccharide catabolic process;0.0480966767337051!GO:0042788;polysomal ribosome;0.0484999706321556!GO:0006596;polyamine biosynthetic process;0.0494265381177719 | |||
|sample_id=10719 | |sample_id=10719 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=retroperitoneum | |sample_tissue=retroperitoneum | ||
|top_motifs=PITX1..3:3.3524894386;ZBTB16:3.07654185942;FOXP1:3.01707211378;AHR_ARNT_ARNT2:2.49116896838;TOPORS:2.47202502486;POU1F1:2.32729495134;POU3F1..4:2.31812440927;ALX1:2.18499757326;NANOG:2.10953267128;HOXA9_MEIS1:1.9743712187;CDX1,2,4:1.91786440605;PAX4:1.89594105358;BREu{core}:1.86771195827;PBX1:1.6797233562;IKZF2:1.63121991451;NRF1:1.62707857239;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.56519867091;POU5F1:1.54802873626;E2F1..5:1.53946116088;AIRE:1.38172833028;ADNP_IRX_SIX_ZHX:1.34627577889;CRX:1.33937483154;PAX6:1.31292615421;FOXD3:1.26395097431;DBP:1.25859672709;FOX{I1,J2}:1.24319379931;NKX6-1,2:1.24313535431;POU6F1:1.22425641361;NFY{A,B,C}:1.20960284889;OCT4_SOX2{dimer}:1.10047473752;NKX2-1,4:1.09991889419;ZNF143:1.07069688621;ZNF384:1.04963396322;GFI1:1.0282725322;YY1:1.02014705985;RORA:1.0065040695;EVI1:1.00442115899;NKX3-1:0.986815020749;T:0.961655041929;CDC5L:0.940609507402;RBPJ:0.912844786848;CUX2:0.889618095672;STAT5{A,B}:0.874866385227;TFDP1:0.861515122525;PRRX1,2:0.83543394929;TAL1_TCF{3,4,12}:0.825694954616;HOX{A6,A7,B6,B7}:0.816416268206;TEF:0.759048500701;NR6A1:0.707623335414;MYB:0.673385094224;FOXM1:0.661272357286;LHX3,4:0.657521865204;GFI1B:0.616740060262;NKX2-3_NKX2-5:0.609331448317;PAX3,7:0.589182584997;ATF5_CREB3:0.578263767523;RFX1:0.54943894848;PAX8:0.548676535073;HOX{A4,D4}:0.542430863682;bHLH_family:0.509604648894;HOX{A5,B5}:0.462754520849;SOX{8,9,10}:0.461178752742;MZF1:0.4413120635;NKX2-2,8:0.421923922308;SOX17:0.414699374748;GATA4:0.395915585294;BPTF:0.373627652148;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.372395419925;FOXL1:0.370437863844;HIF1A:0.357662098206;KLF4:0.321259142216;CREB1:0.320741546852;GZF1:0.301155613238;ELK1,4_GABP{A,B1}:0.241299998309;RFX2..5_RFXANK_RFXAP:0.234799845462;UFEwm:0.231813667876;ATF4:0.222310886525;JUN:0.216445042432;SOX5:0.213298496528;TLX1..3_NFIC{dimer}:0.188179017533;FOXQ1:0.140045206668;PRDM1:0.121316387365;FOXA2:0.120030126198;HAND1,2:0.111616762082;POU2F1..3:0.0568291737183;ZFP161:0.0536304919567;HBP1_HMGB_SSRP1_UBTF:0.0481560333594;DMAP1_NCOR{1,2}_SMARC:0.048151153979;PDX1:0.041667514432;FOXP3:0.0411405698969;LMO2:0.0410225033218;ONECUT1,2:0.0385657495071;PAX2:0.00877195726484;MEF2{A,B,C,D}:-0.00110845413268;EGR1..3:-0.00842741249274;HES1:-0.0138454587441;GTF2I:-0.0278245215586;EN1,2:-0.036479799079;MYFfamily:-0.038036560837;FOXN1:-0.057151302655;REST:-0.0682823441281;MED-1{core}:-0.0745535453939;ATF6:-0.079221442324;NR1H4:-0.0861042716948;MYBL2:-0.0963216821924;PAX5:-0.110982757997;XBP1:-0.12512764398;PATZ1:-0.125198991736;HNF1A:-0.125232619933;ZNF423:-0.13318086265;RREB1:-0.137332412461;LEF1_TCF7_TCF7L1,2:-0.153892531139;ATF2:-0.161088782355;HSF1,2:-0.195872659061;AR:-0.199389137055;STAT1,3:-0.202087752134;ARID5B:-0.248601348212;NKX3-2:-0.26167860093;VSX1,2:-0.262733488848;FOX{D1,D2}:-0.263091796673;GATA6:-0.264533617446;SOX2:-0.283022729604;MYOD1:-0.283463923897;ZIC1..3:-0.288237068437;NFE2L2:-0.306886944269;TGIF1:-0.309137834787;FOXO1,3,4:-0.311237430402;ESRRA:-0.313357593728;ZBTB6:-0.327396196717;SNAI1..3:-0.331732570723;ZEB1:-0.340991768661;RUNX1..3:-0.381356887897;NFIL3:-0.405349205678;NHLH1,2:-0.419982345835;HMGA1,2:-0.421713710432;FOX{F1,F2,J1}:-0.423117351805;SPIB:-0.452669676333;HNF4A_NR2F1,2:-0.478391723953;SP1:-0.483586602374;FOSL2:-0.521494508809;GTF2A1,2:-0.545155834645;HMX1:-0.547609409557;TFAP2B:-0.5497535921;RXR{A,B,G}:-0.554334854022;TBX4,5:-0.55803139582;NFKB1_REL_RELA:-0.570082968643;TBP:-0.570189181268;PAX1,9:-0.584923234094;HIC1:-0.585187986554;ALX4:-0.591434650908;NFIX:-0.603625710223;ZNF238:-0.614312211837;CEBPA,B_DDIT3:-0.632348034674;HLF:-0.645527978702;MTF1:-0.670522386546;SMAD1..7,9:-0.706189578393;NFE2:-0.711559034578;FOS_FOS{B,L1}_JUN{B,D}:-0.747498693166;BACH2:-0.76149171586;SPI1:-0.77131190469;ELF1,2,4:-0.77757381022;TEAD1:-0.78923767026;MTE{core}:-0.79251732133;IRF7:-0.804568305723;NFE2L1:-0.804911960045;ETS1,2:-0.819120455872;MAZ:-0.821522870784;NR5A1,2:-0.838435747337;IRF1,2:-0.896747642413;TLX2:-0.917254605962;SREBF1,2:-0.942950740853;EBF1:-0.976029990585;SPZ1:-1.00254321807;IKZF1:-1.01749875205;NR3C1:-1.08271251545;XCPE1{core}:-1.09538944466;STAT2,4,6:-1.15037386191;SRF:-1.16808771056;NANOG{mouse}:-1.17955452145;GLI1..3:-1.21427634789;TP53:-1.22710913956;ZNF148:-1.25006459823;MAFB:-1.25786913631;PPARG:-1.27016212013;TFAP2{A,C}:-1.3132357586;NFATC1..3:-1.36843226153;GCM1,2:-1.42768803309;TFAP4:-1.78009298217;ESR1:-2.00725580174;RXRA_VDR{dimer}:-2.02704079847;EP300:-2.64026538546;TFCP2:-2.7631788282 | |top_motifs=PITX1..3:3.3524894386;ZBTB16:3.07654185942;FOXP1:3.01707211378;AHR_ARNT_ARNT2:2.49116896838;TOPORS:2.47202502486;POU1F1:2.32729495134;POU3F1..4:2.31812440927;ALX1:2.18499757326;NANOG:2.10953267128;HOXA9_MEIS1:1.9743712187;CDX1,2,4:1.91786440605;PAX4:1.89594105358;BREu{core}:1.86771195827;PBX1:1.6797233562;IKZF2:1.63121991451;NRF1:1.62707857239;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.56519867091;POU5F1:1.54802873626;E2F1..5:1.53946116088;AIRE:1.38172833028;ADNP_IRX_SIX_ZHX:1.34627577889;CRX:1.33937483154;PAX6:1.31292615421;FOXD3:1.26395097431;DBP:1.25859672709;FOX{I1,J2}:1.24319379931;NKX6-1,2:1.24313535431;POU6F1:1.22425641361;NFY{A,B,C}:1.20960284889;OCT4_SOX2{dimer}:1.10047473752;NKX2-1,4:1.09991889419;ZNF143:1.07069688621;ZNF384:1.04963396322;GFI1:1.0282725322;YY1:1.02014705985;RORA:1.0065040695;EVI1:1.00442115899;NKX3-1:0.986815020749;T:0.961655041929;CDC5L:0.940609507402;RBPJ:0.912844786848;CUX2:0.889618095672;STAT5{A,B}:0.874866385227;TFDP1:0.861515122525;PRRX1,2:0.83543394929;TAL1_TCF{3,4,12}:0.825694954616;HOX{A6,A7,B6,B7}:0.816416268206;TEF:0.759048500701;NR6A1:0.707623335414;MYB:0.673385094224;FOXM1:0.661272357286;LHX3,4:0.657521865204;GFI1B:0.616740060262;NKX2-3_NKX2-5:0.609331448317;PAX3,7:0.589182584997;ATF5_CREB3:0.578263767523;RFX1:0.54943894848;PAX8:0.548676535073;HOX{A4,D4}:0.542430863682;bHLH_family:0.509604648894;HOX{A5,B5}:0.462754520849;SOX{8,9,10}:0.461178752742;MZF1:0.4413120635;NKX2-2,8:0.421923922308;SOX17:0.414699374748;GATA4:0.395915585294;BPTF:0.373627652148;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.372395419925;FOXL1:0.370437863844;HIF1A:0.357662098206;KLF4:0.321259142216;CREB1:0.320741546852;GZF1:0.301155613238;ELK1,4_GABP{A,B1}:0.241299998309;RFX2..5_RFXANK_RFXAP:0.234799845462;UFEwm:0.231813667876;ATF4:0.222310886525;JUN:0.216445042432;SOX5:0.213298496528;TLX1..3_NFIC{dimer}:0.188179017533;FOXQ1:0.140045206668;PRDM1:0.121316387365;FOXA2:0.120030126198;HAND1,2:0.111616762082;POU2F1..3:0.0568291737183;ZFP161:0.0536304919567;HBP1_HMGB_SSRP1_UBTF:0.0481560333594;DMAP1_NCOR{1,2}_SMARC:0.048151153979;PDX1:0.041667514432;FOXP3:0.0411405698969;LMO2:0.0410225033218;ONECUT1,2:0.0385657495071;PAX2:0.00877195726484;MEF2{A,B,C,D}:-0.00110845413268;EGR1..3:-0.00842741249274;HES1:-0.0138454587441;GTF2I:-0.0278245215586;EN1,2:-0.036479799079;MYFfamily:-0.038036560837;FOXN1:-0.057151302655;REST:-0.0682823441281;MED-1{core}:-0.0745535453939;ATF6:-0.079221442324;NR1H4:-0.0861042716948;MYBL2:-0.0963216821924;PAX5:-0.110982757997;XBP1:-0.12512764398;PATZ1:-0.125198991736;HNF1A:-0.125232619933;ZNF423:-0.13318086265;RREB1:-0.137332412461;LEF1_TCF7_TCF7L1,2:-0.153892531139;ATF2:-0.161088782355;HSF1,2:-0.195872659061;AR:-0.199389137055;STAT1,3:-0.202087752134;ARID5B:-0.248601348212;NKX3-2:-0.26167860093;VSX1,2:-0.262733488848;FOX{D1,D2}:-0.263091796673;GATA6:-0.264533617446;SOX2:-0.283022729604;MYOD1:-0.283463923897;ZIC1..3:-0.288237068437;NFE2L2:-0.306886944269;TGIF1:-0.309137834787;FOXO1,3,4:-0.311237430402;ESRRA:-0.313357593728;ZBTB6:-0.327396196717;SNAI1..3:-0.331732570723;ZEB1:-0.340991768661;RUNX1..3:-0.381356887897;NFIL3:-0.405349205678;NHLH1,2:-0.419982345835;HMGA1,2:-0.421713710432;FOX{F1,F2,J1}:-0.423117351805;SPIB:-0.452669676333;HNF4A_NR2F1,2:-0.478391723953;SP1:-0.483586602374;FOSL2:-0.521494508809;GTF2A1,2:-0.545155834645;HMX1:-0.547609409557;TFAP2B:-0.5497535921;RXR{A,B,G}:-0.554334854022;TBX4,5:-0.55803139582;NFKB1_REL_RELA:-0.570082968643;TBP:-0.570189181268;PAX1,9:-0.584923234094;HIC1:-0.585187986554;ALX4:-0.591434650908;NFIX:-0.603625710223;ZNF238:-0.614312211837;CEBPA,B_DDIT3:-0.632348034674;HLF:-0.645527978702;MTF1:-0.670522386546;SMAD1..7,9:-0.706189578393;NFE2:-0.711559034578;FOS_FOS{B,L1}_JUN{B,D}:-0.747498693166;BACH2:-0.76149171586;SPI1:-0.77131190469;ELF1,2,4:-0.77757381022;TEAD1:-0.78923767026;MTE{core}:-0.79251732133;IRF7:-0.804568305723;NFE2L1:-0.804911960045;ETS1,2:-0.819120455872;MAZ:-0.821522870784;NR5A1,2:-0.838435747337;IRF1,2:-0.896747642413;TLX2:-0.917254605962;SREBF1,2:-0.942950740853;EBF1:-0.976029990585;SPZ1:-1.00254321807;IKZF1:-1.01749875205;NR3C1:-1.08271251545;XCPE1{core}:-1.09538944466;STAT2,4,6:-1.15037386191;SRF:-1.16808771056;NANOG{mouse}:-1.17955452145;GLI1..3:-1.21427634789;TP53:-1.22710913956;ZNF148:-1.25006459823;MAFB:-1.25786913631;PPARG:-1.27016212013;TFAP2{A,C}:-1.3132357586;NFATC1..3:-1.36843226153;GCM1,2:-1.42768803309;TFAP4:-1.78009298217;ESR1:-2.00725580174;RXRA_VDR{dimer}:-2.02704079847;EP300:-2.64026538546;TFCP2:-2.7631788282 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10719-109I8;search_select_hide=table117:FF:10719-109I8 | |||
}} | }} | ||
Latest revision as of 15:01, 3 June 2020
| Name: | carcinoid cell line:SK-PN-DW |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11846 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11846
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11846
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.421 |
| 10 | 10 | 0.748 |
| 100 | 100 | 0.148 |
| 101 | 101 | 0.408 |
| 102 | 102 | 0.671 |
| 103 | 103 | 0.0573 |
| 104 | 104 | 0.506 |
| 105 | 105 | 0.336 |
| 106 | 106 | 0.00199 |
| 107 | 107 | 0.0211 |
| 108 | 108 | 0.671 |
| 109 | 109 | 0.248 |
| 11 | 11 | 0.992 |
| 110 | 110 | 0.876 |
| 111 | 111 | 0.508 |
| 112 | 112 | 0.185 |
| 113 | 113 | 0.697 |
| 114 | 114 | 0.0459 |
| 115 | 115 | 0.829 |
| 116 | 116 | 0.567 |
| 117 | 117 | 0.82 |
| 118 | 118 | 0.721 |
| 119 | 119 | 0.631 |
| 12 | 12 | 0.345 |
| 120 | 120 | 0.691 |
| 121 | 121 | 0.25 |
| 122 | 122 | 0.635 |
| 123 | 123 | 2.09199e-5 |
| 124 | 124 | 0.0792 |
| 125 | 125 | 0.981 |
| 126 | 126 | 0.229 |
| 127 | 127 | 0.213 |
| 128 | 128 | 0.131 |
| 129 | 129 | 0.737 |
| 13 | 13 | 0.926 |
| 130 | 130 | 0.995 |
| 131 | 131 | 0.462 |
| 132 | 132 | 0.683 |
| 133 | 133 | 0.719 |
| 134 | 134 | 0.987 |
| 135 | 135 | 0.0947 |
| 136 | 136 | 0.382 |
| 137 | 137 | 0.678 |
| 138 | 138 | 0.696 |
| 139 | 139 | 0.679 |
| 14 | 14 | 0.463 |
| 140 | 140 | 0.949 |
| 141 | 141 | 0.242 |
| 142 | 142 | 0.738 |
| 143 | 143 | 0.0537 |
| 144 | 144 | 0.75 |
| 145 | 145 | 0.451 |
| 146 | 146 | 0.691 |
| 147 | 147 | 0.978 |
| 148 | 148 | 0.487 |
| 149 | 149 | 0.13 |
| 15 | 15 | 0.832 |
| 150 | 150 | 0.19 |
| 151 | 151 | 0.269 |
| 152 | 152 | 0.00136 |
| 153 | 153 | 0.961 |
| 154 | 154 | 0.168 |
| 155 | 155 | 0.808 |
| 156 | 156 | 0.867 |
| 157 | 157 | 0.666 |
| 158 | 158 | 0.4 |
| 159 | 159 | 0.257 |
| 16 | 16 | 0.267 |
| 160 | 160 | 0.731 |
| 161 | 161 | 0.413 |
| 162 | 162 | 0.762 |
| 163 | 163 | 0.501 |
| 164 | 164 | 0.414 |
| 165 | 165 | 0.805 |
| 166 | 166 | 0.827 |
| 167 | 167 | 0.401 |
| 168 | 168 | 0.199 |
| 169 | 169 | 0.0365 |
| 17 | 17 | 0.461 |
| 18 | 18 | 0.36 |
| 19 | 19 | 0.13 |
| 2 | 2 | 0.0496 |
| 20 | 20 | 0.492 |
| 21 | 21 | 0.623 |
| 22 | 22 | 0.0328 |
| 23 | 23 | 0.0337 |
| 24 | 24 | 0.448 |
| 25 | 25 | 0.8 |
| 26 | 26 | 0.915 |
| 27 | 27 | 0.106 |
| 28 | 28 | 0.668 |
| 29 | 29 | 0.732 |
| 3 | 3 | 0.984 |
| 30 | 30 | 0.0531 |
| 31 | 31 | 0.259 |
| 32 | 32 | 0.0391 |
| 33 | 33 | 0.251 |
| 34 | 34 | 0.102 |
| 35 | 35 | 0.48 |
| 36 | 36 | 0.26 |
| 37 | 37 | 0.147 |
| 38 | 38 | 0.762 |
| 39 | 39 | 0.416 |
| 4 | 4 | 0.841 |
| 40 | 40 | 0.714 |
| 41 | 41 | 0.0652 |
| 42 | 42 | 0.437 |
| 43 | 43 | 0.274 |
| 44 | 44 | 0.666 |
| 45 | 45 | 0.243 |
| 46 | 46 | 0.605 |
| 47 | 47 | 0.702 |
| 48 | 48 | 0.993 |
| 49 | 49 | 0.986 |
| 5 | 5 | 0.39 |
| 50 | 50 | 0.425 |
| 51 | 51 | 0.497 |
| 52 | 52 | 0.114 |
| 53 | 53 | 0.269 |
| 54 | 54 | 0.367 |
| 55 | 55 | 0.29 |
| 56 | 56 | 0.794 |
| 57 | 57 | 0.167 |
| 58 | 58 | 0.968 |
| 59 | 59 | 0.0282 |
| 6 | 6 | 0.171 |
| 60 | 60 | 0.0506 |
| 61 | 61 | 0.707 |
| 62 | 62 | 0.588 |
| 63 | 63 | 0.967 |
| 64 | 64 | 0.602 |
| 65 | 65 | 0.666 |
| 66 | 66 | 0.652 |
| 67 | 67 | 0.757 |
| 68 | 68 | 0.597 |
| 69 | 69 | 0.738 |
| 7 | 7 | 0.921 |
| 70 | 70 | 0.371 |
| 71 | 71 | 0.754 |
| 72 | 72 | 0.155 |
| 73 | 73 | 0.00302 |
| 74 | 74 | 0.934 |
| 75 | 75 | 0.912 |
| 76 | 76 | 0.52 |
| 77 | 77 | 0.0715 |
| 78 | 78 | 0.798 |
| 79 | 79 | 0.103 |
| 8 | 8 | 0.955 |
| 80 | 80 | 0.0143 |
| 81 | 81 | 0.619 |
| 82 | 82 | 0.996 |
| 83 | 83 | 0.948 |
| 84 | 84 | 0.631 |
| 85 | 85 | 0.0454 |
| 86 | 86 | 0.615 |
| 87 | 87 | 0.202 |
| 88 | 88 | 0.498 |
| 89 | 89 | 0.0951 |
| 9 | 9 | 0.043 |
| 90 | 90 | 0.066 |
| 91 | 91 | 0.34 |
| 92 | 92 | 0.503 |
| 93 | 93 | 0.757 |
| 94 | 94 | 0.714 |
| 95 | 95 | 0.197 |
| 96 | 96 | 0.786 |
| 97 | 97 | 0.478 |
| 98 | 98 | 0.581 |
| 99 | 99 | 0.613 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11846
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100729 carcinoid cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3119 (gastrointestinal system cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101533 (gastrointestinal cancer cell sample)
0100729 (carcinoid cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
