FF:10636-108I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005352 | |||
|accession_numbers=CAGE;DRX007861;DRR008733;DRZ000158;DRZ001543;DRZ011508;DRZ012893 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:305,DOID:120,DOID:299,DOID:4468 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167,FF:0102787 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/clear%2520cell%2520carcinoma%2520cell%2520line%253aTEN.CNhs11930.10636-108I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10636-108I6 | |id=FF:10636-108I6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102787 | ||
|is_obsolete= | |||
|library_id=CNhs11930 | |||
|library_id_phase_based=2:CNhs11930 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10636 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10636 | |||
|name=clear cell carcinoma cell line:TEN | |name=clear cell carcinoma cell line:TEN | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11930,LSID835,release010,COMPLETED | |profile_hcage=CNhs11930,LSID835,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0613479984985005,0.00881162328802371,0,0,0,0.0127803283651383,0.065666642656593,-0.101734939754566,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0876563676918346,0,0,0,0,0,-0.0322912536114645,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.122695996997001,0,-0.0660057435542067,0,0,0,0,0,0,0,0,0.7702899533431,0,0,0,0,0,-0.027519097333826,0,-0.0313257185860121,0,0,-0.0316769845565039,0,0,0,0,0,0,0,0,0.065666642656593,0,0,0,0,0.218254785871688,0,0,0,0.161427053242778,0.0328333213282965,0,0.0365550072077895,0,0,0,-0.0375760651996022,0,0,0,-0.231876586263077,-0.0487865450693905,0,0,0.0328333213282965,0.218254785871688,0.161119721358657,-0.0442958809740985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0098244146966988,0.173098358451524,0,0,-0.0544626419583621,-0.0773927182887329,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0.173098358451524,0,0.161119721358657,0,0.218254785871688,0.122695996997001,0,0,0,0,0.065666642656593,0,0,0,-0.124482878288564,0,0.217665868229787,-0.020819145526471,0,0,-0.0963196806197897,0,0.065666642656593,0,0,0.065666642656593,0,0,0,0,-0.128119866952565,0,0.0152540910672781,0.141960714264141,0,0,0,0.0679238981419114,-0.087217445026719,0,-0.0446805248513283,-0.0026776184207752,0,0,0,0,-0.204574026677731,0,-0.0552128411371476,-0.0827201683234173,0,-0.61357952365327,0.152239469586355,0,0,0,-0.567670884101296,0.0525217073974529,0,0,-0.01265245881603,-0.0158760626176732,0,0,-0.391044581551635,0,-0.481032066781759,-0.216034729053956,0,0,0,0,0,0,0,0.065666642656593,0,0,0.065666642656593,0,0,0.112981924612908,0.210640641560253,0,0.065666642656593,0.259155072596363,0,-0.499519572442988,0,0,-0.0767532813899086,-0.203965333828268,-0.0240794946982834,-0.204528107323153,0,-0.0432346544135502,-0.189734974289358,-0.565872009523143,-0.231876586263077,-0.147401849371139,-0.189981719549847,-0.0334370020920037,0.0556779510382759,-0.315157944109803,-0.0417729321932883,-0.436453914339698,-0.0302447930437535,-0.760293823282895,-0.183298786178656,0,0.122695996997001,-0.0276550857031376,0.311736786068639,0,-0.0395435673989792,0.0264549407869301,0.131056472209835,-0.149564350624853,-0.419915576395099,0.186550773529878,-0.317207370160515,-0.0395325284566706,-0.28433809444507,-0.0524286191904755,-0.098473963666888,0.0294046227800697,0,-0.124633276979004,-0.176173719567695,0.330669996937633,0.423873467085002,0,-0.0914396137066573,-0.0683442610773682,0,-0.32042848059236,-0.336388796507676,0,0.065666642656593,-0.282244356304754,0,0,0,0,0,0.294983291722468,-0.473825500373573,-0.167188918898952,0,-0.144405288290866,-0.0124630362839916,-0.131812524409601,0,0.133234855646999,-0.0794747646138046,-0.175378155364291,-0.292633804596236,0,0.197229431652489,0.189408184117977,-7.08993503353295e-05,-0.163239732795374,-0.0584468268118252,-0.153559839783963,0.0112864215733213,-0.00515296170455004,-0.231225197815101,0.0347003626881752,-0.0881268324752877,0,-0.665289964646692,-0.679498131621524,0,-0.0478555642781433,0,-0.201769406754753,0,-0.138392361657774,0,-0.233769408193247,-0.281278678876877,-0.439289374580686,0.0154009507497701,0,-0.152837591110261,-0.722464295117381,0,-0.0132293005756173,-0.0661548489568003,0.661918812579562,-0.150367083334639,0.271946969205108,-0.0207248930679072,0.213977456678187,0,-0.0194501909334825,0,0,-0.103857943103299,-0.0172212518927004,0,0.100271047359944,0.161427053242778,-0.109779455284206,0.00672492356206685,0,0,-0.108071099753503,0,0.816235695727534,0.679225693001858,-0.0636048451378017,0.113196002320724,-0.253326341486756,-0.0774689410257705,0.590655881362273,0,0,0.542139307358471,0,-0.391145531381417,0,0,-0.0874704389723456,0.101626672881556,0,0,0,0.0279687874470953,0,0,0,0,0,0,0,0.0426606654809918,0.091635625793271,0,0.0191499733994833,0,0,0,0.392537848104323,0.446468956009719,0,0,0.173098358451524,0.422652323685614,0,0.136137656919943,0.463208448299829,0,0,0,0.0808094720131836,0.0150182237769645,0,-0.0661960638410387,0,0,0,0,0.0365550072077895,0,0,0.129577536298182,0,0.00793618560292901,-0.0990143885046061,0,0,0,-0.15425840460479,0,0,0,0,-0.257769918943902,0,0,0.115239631051961,0,-0.477438177351511,0.0411141174501595,-6.2076851953259e-05,0.185783950605876,0.76283401784645,0.748983319741612,0,0.122695996997001,-0.138651134792887,0,0,0.0640651740192173,0.0403257740313346,0.065666642656593,0.0139878260877003,0,0,0,0,0,0.065666642656593,0.280122073511333,0,0,0,0,0.065666642656593,0.065666642656593,0.259155072596363,0,0,0,0,-0.35857535141612,0.080874301793014,0.122695996997001,0,0,0,0,0.122695996997001,0,0.148992335372621,0.0250151548290667,0,0,0.0613479984985005,0.065666642656593,0,0.065666642656593,0,0,0.0230106462478468,0,0,0,0,0,-0.0313257185860121,0,0.065666642656593,0,0.122695996997001,-0.564807121153884,0,0,-0.10426377374199,0,0,0,0,0,0,0,0.0157385239784926,0,0,0,0,0,0.269218762068876,-0.04426555003583,0,0.065666642656593,0,0,0,0.065666642656593,0,-0.101734939754566,0,0,0,0,0.00881162328802371,0,0,0,0.586955702192639,0,0.0127803283651383,0,0.065666642656593,0,0,0,0,0.0328333213282965,0,1.0331811459105,0,0,0,0,0,0,0,0,0,0,0,0,-0.374344607546896,-0.0111512821470559,0,-0.109096216402769,0,0,-0.10305081633486,0,0,0,0,0,0,0.0300075744699734,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00280817988021886,0,0,0.173098358451524,0,0,0,0,0,0,-1.99289864143762e-05,0,0,0,0,0,0,0,-0.0322912536114645,0.494436585911089,0,0.341371676622317,0,0,0,0,0,0,0.0673869576886637,-0.135323222098885,0.0142674438001731,0,0,0,0.039795747344342,0,0,-0.0279660348926987,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218298319294406,0,0,-0.0876563676918346,0,0.296532874566658,0,0,0,0,0,0,0,0,0,0,0.0613479984985005,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.065666642656593,0.0613479984985005,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0.065666642656593,0,0,0,0,0,0,0,0,-0.0800184682686384,0,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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=17.00507 | |rna_weight_ug=17.00507 | ||
|sample_age=74 | |sample_age=74 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1433 | |sample_cell_catalog=RCB1433 | ||
|sample_cell_line=TEN | |sample_cell_line=TEN | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.74500757165068e-242!GO:0043226;organelle;3.15865771259387e-201!GO:0043229;intracellular organelle;1.38965704863568e-200!GO:0043231;intracellular membrane-bound organelle;2.79448456962724e-199!GO:0043227;membrane-bound organelle;2.92763069433015e-199!GO:0005737;cytoplasm;2.73095601190538e-176!GO:0044422;organelle part;5.65456324010981e-159!GO:0044446;intracellular organelle part;3.40351660219628e-157!GO:0044444;cytoplasmic part;3.40483643859052e-122!GO:0032991;macromolecular complex;1.63174448135072e-99!GO:0044237;cellular metabolic process;1.08218304074389e-91!GO:0044238;primary metabolic process;1.31580474783738e-88!GO:0005634;nucleus;6.19922615706847e-87!GO:0030529;ribonucleoprotein complex;1.73884361104447e-84!GO:0044428;nuclear part;1.01442082375187e-82!GO:0043170;macromolecule metabolic process;4.98220222585098e-81!GO:0043233;organelle lumen;1.03788910580321e-74!GO:0031974;membrane-enclosed lumen;1.03788910580321e-74!GO:0003723;RNA binding;9.02278281209015e-72!GO:0005515;protein binding;1.1213725021825e-66!GO:0005739;mitochondrion;3.21232155242003e-61!GO:0031090;organelle membrane;2.05971487278331e-53!GO:0005840;ribosome;1.57040524195978e-50!GO:0043234;protein complex;2.07780558350872e-50!GO:0006396;RNA processing;3.97348284476717e-50!GO:0043283;biopolymer metabolic process;1.34953940122948e-48!GO:0016043;cellular component organization and biogenesis;2.00192263198932e-48!GO:0031981;nuclear lumen;5.89377239874533e-48!GO:0006412;translation;8.10766336326985e-48!GO:0019538;protein metabolic process;1.68818409984321e-47!GO:0003735;structural constituent of ribosome;1.58534975597482e-44!GO:0015031;protein transport;1.35327292432886e-43!GO:0033036;macromolecule localization;1.14819526803389e-42!GO:0044267;cellular protein metabolic process;4.6551234590928e-42!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.29009800484737e-42!GO:0044260;cellular macromolecule metabolic process;8.84052664388034e-42!GO:0016071;mRNA metabolic process;4.3045631925734e-41!GO:0009058;biosynthetic process;8.75506229627516e-41!GO:0031967;organelle envelope;1.3917518111774e-40!GO:0043228;non-membrane-bound organelle;1.42984094276404e-40!GO:0043232;intracellular non-membrane-bound organelle;1.42984094276404e-40!GO:0031975;envelope;2.48782119791453e-40!GO:0044249;cellular biosynthetic process;4.80306566053628e-40!GO:0044429;mitochondrial part;1.00656370967443e-39!GO:0010467;gene expression;1.55885391608833e-39!GO:0033279;ribosomal subunit;6.61424447370224e-39!GO:0008104;protein localization;1.80883078968219e-38!GO:0046907;intracellular transport;2.2716649845417e-38!GO:0045184;establishment of protein localization;5.11359847630262e-38!GO:0006996;organelle organization and biogenesis;1.80248477381744e-37!GO:0008380;RNA splicing;4.83846009112605e-37!GO:0006259;DNA metabolic process;5.95569911015634e-36!GO:0009059;macromolecule biosynthetic process;1.01448781419989e-35!GO:0006397;mRNA processing;3.49877375018618e-35!GO:0065003;macromolecular complex assembly;4.21978218737826e-35!GO:0005829;cytosol;1.23699178579536e-33!GO:0022607;cellular component assembly;1.35588222335433e-31!GO:0007049;cell cycle;3.18703573914497e-31!GO:0006886;intracellular protein transport;5.05444803853381e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.66148832879826e-29!GO:0005654;nucleoplasm;3.6637552567229e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.5887001376706e-27!GO:0005681;spliceosome;2.64481680408127e-27!GO:0012505;endomembrane system;1.70020643213242e-25!GO:0019866;organelle inner membrane;3.02823980669221e-25!GO:0005740;mitochondrial envelope;5.94640731321896e-25!GO:0000166;nucleotide binding;3.36093110750112e-24!GO:0051649;establishment of cellular localization;3.4887314661513e-24!GO:0031966;mitochondrial membrane;1.09267186987304e-23!GO:0022402;cell cycle process;1.15428940294878e-23!GO:0051641;cellular localization;1.64398232164453e-23!GO:0003676;nucleic acid binding;2.09987003650824e-23!GO:0044451;nucleoplasm part;2.95163857706434e-23!GO:0005743;mitochondrial inner membrane;6.8959950276025e-23!GO:0000278;mitotic cell cycle;7.39196376901616e-23!GO:0044445;cytosolic part;4.33733665782075e-22!GO:0015934;large ribosomal subunit;4.1787398421663e-21!GO:0044265;cellular macromolecule catabolic process;9.46436773816319e-21!GO:0006974;response to DNA damage stimulus;1.64036131021051e-20!GO:0016462;pyrophosphatase activity;2.52548406714528e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.86660283510333e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;3.61302845154428e-20!GO:0005694;chromosome;6.06490936770539e-20!GO:0022403;cell cycle phase;9.2888399397534e-20!GO:0000087;M phase of mitotic cell cycle;1.66489075320152e-19!GO:0017111;nucleoside-triphosphatase activity;1.93788385082049e-19!GO:0006457;protein folding;3.79595297145525e-19!GO:0005730;nucleolus;3.8344802862095e-19!GO:0007067;mitosis;4.26583797100699e-19!GO:0015935;small ribosomal subunit;8.770157713576e-19!GO:0044427;chromosomal part;1.57297534654725e-18!GO:0016070;RNA metabolic process;2.3802890906462e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;3.73864701408094e-18!GO:0031980;mitochondrial lumen;4.62662758075062e-18!GO:0005759;mitochondrial matrix;4.62662758075062e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.79746993957505e-18!GO:0006119;oxidative phosphorylation;6.10560609178305e-18!GO:0019941;modification-dependent protein catabolic process;6.20534536574548e-18!GO:0043632;modification-dependent macromolecule catabolic process;6.20534536574548e-18!GO:0005783;endoplasmic reticulum;7.57798052697161e-18!GO:0006281;DNA repair;1.00074379596199e-17!GO:0044257;cellular protein catabolic process;1.08114137038947e-17!GO:0022618;protein-RNA complex assembly;1.31493948483382e-17!GO:0016874;ligase activity;1.40120015482971e-17!GO:0000279;M phase;1.69468865101957e-17!GO:0043285;biopolymer catabolic process;2.05079212760824e-17!GO:0044432;endoplasmic reticulum part;2.05079212760824e-17!GO:0051301;cell division;2.25914295747666e-17!GO:0009057;macromolecule catabolic process;3.02756430059169e-17!GO:0005635;nuclear envelope;6.55959027038438e-17!GO:0044455;mitochondrial membrane part;6.68840210558934e-17!GO:0032553;ribonucleotide binding;9.96011832651648e-17!GO:0032555;purine ribonucleotide binding;9.96011832651648e-17!GO:0051276;chromosome organization and biogenesis;1.04100896205209e-16!GO:0044248;cellular catabolic process;2.01330687893102e-16!GO:0008134;transcription factor binding;2.95370754955703e-16!GO:0006512;ubiquitin cycle;3.38545340178531e-16!GO:0017076;purine nucleotide binding;4.46575847399583e-16!GO:0006260;DNA replication;6.13962770770085e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.2562904510793e-15!GO:0006605;protein targeting;1.34801420729128e-15!GO:0051082;unfolded protein binding;1.86903248773336e-15!GO:0008135;translation factor activity, nucleic acid binding;3.7541373264966e-15!GO:0030163;protein catabolic process;6.4093251035726e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.03234473196853e-15!GO:0031965;nuclear membrane;7.93918952829151e-15!GO:0005524;ATP binding;9.54114867484991e-15!GO:0048770;pigment granule;1.39865014586418e-14!GO:0042470;melanosome;1.39865014586418e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.61938880219853e-14!GO:0009719;response to endogenous stimulus;2.96829649230616e-14!GO:0005794;Golgi apparatus;3.01618423408767e-14!GO:0005761;mitochondrial ribosome;3.73962494080409e-14!GO:0000313;organellar ribosome;3.73962494080409e-14!GO:0032559;adenyl ribonucleotide binding;3.84827971370697e-14!GO:0051186;cofactor metabolic process;4.3503399602346e-14!GO:0044453;nuclear membrane part;7.50821063399718e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.10950697688254e-14!GO:0000375;RNA splicing, via transesterification reactions;8.10950697688254e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.10950697688254e-14!GO:0043412;biopolymer modification;1.43809059334429e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.44429382865569e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.83974345778168e-13!GO:0030554;adenyl nucleotide binding;2.24222115240735e-13!GO:0005789;endoplasmic reticulum membrane;2.83271005421547e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.83271005421547e-13!GO:0003954;NADH dehydrogenase activity;2.83271005421547e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.83271005421547e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;7.92184974839824e-13!GO:0012501;programmed cell death;8.07480022439286e-13!GO:0042254;ribosome biogenesis and assembly;9.27302699717722e-13!GO:0006915;apoptosis;1.50098129303037e-12!GO:0016887;ATPase activity;3.13283730301176e-12!GO:0006323;DNA packaging;3.20567781356307e-12!GO:0006732;coenzyme metabolic process;3.22032583431641e-12!GO:0005746;mitochondrial respiratory chain;5.31117856022781e-12!GO:0042623;ATPase activity, coupled;5.706571349733e-12!GO:0048193;Golgi vesicle transport;1.30811569455001e-11!GO:0005643;nuclear pore;1.32222848869297e-11!GO:0006464;protein modification process;1.53144339800695e-11!GO:0016604;nuclear body;1.96898479027216e-11!GO:0008219;cell death;2.17813269558436e-11!GO:0016265;death;2.17813269558436e-11!GO:0006403;RNA localization;2.34791480745684e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.34791480745684e-11!GO:0045271;respiratory chain complex I;2.34791480745684e-11!GO:0005747;mitochondrial respiratory chain complex I;2.34791480745684e-11!GO:0004386;helicase activity;2.72299187906125e-11!GO:0050657;nucleic acid transport;2.84397829318093e-11!GO:0051236;establishment of RNA localization;2.84397829318093e-11!GO:0050658;RNA transport;2.84397829318093e-11!GO:0003743;translation initiation factor activity;4.0017086495682e-11!GO:0000074;regulation of progression through cell cycle;4.046920962328e-11!GO:0051726;regulation of cell cycle;4.87527071431594e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.11682277611785e-11!GO:0006913;nucleocytoplasmic transport;6.89494716140605e-11!GO:0016192;vesicle-mediated transport;7.83048900634391e-11!GO:0065004;protein-DNA complex assembly;1.08950986948997e-10!GO:0006413;translational initiation;1.22416334613058e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.4078999204945e-10!GO:0006446;regulation of translational initiation;1.70840064457681e-10!GO:0051169;nuclear transport;1.76982305547157e-10!GO:0006461;protein complex assembly;2.2734649360867e-10!GO:0006399;tRNA metabolic process;2.32897396472584e-10!GO:0008565;protein transporter activity;3.93811964535232e-10!GO:0042775;organelle ATP synthesis coupled electron transport;4.69779183275702e-10!GO:0042773;ATP synthesis coupled electron transport;4.69779183275702e-10!GO:0065002;intracellular protein transport across a membrane;4.69779183275702e-10!GO:0003712;transcription cofactor activity;4.95784091879322e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.18627860277028e-10!GO:0009056;catabolic process;5.83868157888154e-10!GO:0015630;microtubule cytoskeleton;6.46414364990028e-10!GO:0043687;post-translational protein modification;7.30566382558172e-10!GO:0009055;electron carrier activity;9.91248883891085e-10!GO:0006333;chromatin assembly or disassembly;1.42609262655078e-09!GO:0000785;chromatin;1.58496696754439e-09!GO:0051028;mRNA transport;3.17247385376708e-09!GO:0008026;ATP-dependent helicase activity;3.23273012601139e-09!GO:0009259;ribonucleotide metabolic process;3.70161048292115e-09!GO:0008639;small protein conjugating enzyme activity;4.81724621696122e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.7152407120005e-09!GO:0016607;nuclear speck;6.36648658054218e-09!GO:0046930;pore complex;6.67921336460387e-09!GO:0006163;purine nucleotide metabolic process;7.27497679977062e-09!GO:0004842;ubiquitin-protein ligase activity;8.19594721091915e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.73098889760085e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.10728102050958e-08!GO:0006164;purine nucleotide biosynthetic process;1.13135547007011e-08!GO:0019787;small conjugating protein ligase activity;1.28178700612821e-08!GO:0043069;negative regulation of programmed cell death;1.42132009309307e-08!GO:0006366;transcription from RNA polymerase II promoter;1.63444961060916e-08!GO:0009260;ribonucleotide biosynthetic process;2.00144888421226e-08!GO:0043067;regulation of programmed cell death;2.04647979580157e-08!GO:0005793;ER-Golgi intermediate compartment;2.05702341169919e-08!GO:0007005;mitochondrion organization and biogenesis;2.30676112457307e-08!GO:0042981;regulation of apoptosis;2.48424450589331e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.57604443694764e-08!GO:0017038;protein import;2.57604443694764e-08!GO:0048475;coated membrane;2.73966032180305e-08!GO:0030117;membrane coat;2.73966032180305e-08!GO:0000775;chromosome, pericentric region;3.40421942848979e-08!GO:0006364;rRNA processing;3.93813655217985e-08!GO:0043066;negative regulation of apoptosis;4.34741930230439e-08!GO:0009150;purine ribonucleotide metabolic process;4.85284272270769e-08!GO:0016072;rRNA metabolic process;5.93969084158872e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.6617366585461e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.81644937437888e-08!GO:0004812;aminoacyl-tRNA ligase activity;6.81644937437888e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.81644937437888e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.53199438933842e-08!GO:0051188;cofactor biosynthetic process;8.17594811193993e-08!GO:0005768;endosome;8.28061726209663e-08!GO:0043038;amino acid activation;1.08374632624289e-07!GO:0006418;tRNA aminoacylation for protein translation;1.08374632624289e-07!GO:0043039;tRNA aminoacylation;1.08374632624289e-07!GO:0006261;DNA-dependent DNA replication;1.11358567399545e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.1692969970348e-07!GO:0016881;acid-amino acid ligase activity;1.39424681391303e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.47158705382423e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.47158705382423e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.53842245949499e-07!GO:0030120;vesicle coat;1.86775858863435e-07!GO:0030662;coated vesicle membrane;1.86775858863435e-07!GO:0006334;nucleosome assembly;1.90943191072164e-07!GO:0016568;chromatin modification;2.01517636038347e-07!GO:0016787;hydrolase activity;2.25194847027397e-07!GO:0005667;transcription factor complex;2.28174723135465e-07!GO:0050794;regulation of cellular process;2.3106869715875e-07!GO:0015986;ATP synthesis coupled proton transport;2.42627330802457e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.42627330802457e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.53517303466247e-07!GO:0009141;nucleoside triphosphate metabolic process;3.38569058519739e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.39147998385274e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.39147998385274e-07!GO:0006916;anti-apoptosis;3.39147998385274e-07!GO:0005819;spindle;4.9995375909946e-07!GO:0009108;coenzyme biosynthetic process;5.48055731894829e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.50251436366727e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.56469734699859e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.56469734699859e-07!GO:0043623;cellular protein complex assembly;6.4933059765963e-07!GO:0031497;chromatin assembly;6.6063222164026e-07!GO:0043566;structure-specific DNA binding;7.18749122386783e-07!GO:0004298;threonine endopeptidase activity;7.20441344935025e-07!GO:0044431;Golgi apparatus part;7.53160743507965e-07!GO:0016740;transferase activity;7.95529323107004e-07!GO:0032446;protein modification by small protein conjugation;9.39049303771247e-07!GO:0007051;spindle organization and biogenesis;9.77190057770107e-07!GO:0000245;spliceosome assembly;1.11487787938744e-06!GO:0005657;replication fork;1.22731151535163e-06!GO:0044440;endosomal part;1.25241993734332e-06!GO:0010008;endosome membrane;1.25241993734332e-06!GO:0005815;microtubule organizing center;1.30721703074398e-06!GO:0016567;protein ubiquitination;1.66109443559685e-06!GO:0019829;cation-transporting ATPase activity;1.6811870503514e-06!GO:0051329;interphase of mitotic cell cycle;1.77470767736569e-06!GO:0051325;interphase;1.90372062689893e-06!GO:0009117;nucleotide metabolic process;1.99775322654657e-06!GO:0005813;centrosome;2.06859540236181e-06!GO:0051246;regulation of protein metabolic process;3.03830936679422e-06!GO:0006754;ATP biosynthetic process;3.09177567357613e-06!GO:0006753;nucleoside phosphate metabolic process;3.09177567357613e-06!GO:0009060;aerobic respiration;3.47369171831806e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.64882081095846e-06!GO:0006099;tricarboxylic acid cycle;4.61228017925697e-06!GO:0046356;acetyl-CoA catabolic process;4.61228017925697e-06!GO:0048523;negative regulation of cellular process;4.86775999451771e-06!GO:0006752;group transfer coenzyme metabolic process;4.98993682388556e-06!GO:0046034;ATP metabolic process;6.02420971704375e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.19715725599063e-06!GO:0051170;nuclear import;6.39146471897752e-06!GO:0006613;cotranslational protein targeting to membrane;6.6968590487975e-06!GO:0003724;RNA helicase activity;6.74378080837875e-06!GO:0045333;cellular respiration;7.56894383916561e-06!GO:0045259;proton-transporting ATP synthase complex;7.88567319474789e-06!GO:0005770;late endosome;9.23502781634011e-06!GO:0000075;cell cycle checkpoint;9.82057960792855e-06!GO:0016563;transcription activator activity;1.00762564734767e-05!GO:0003924;GTPase activity;1.03037180415409e-05!GO:0016779;nucleotidyltransferase activity;1.12014229674926e-05!GO:0005773;vacuole;1.13343444487304e-05!GO:0051187;cofactor catabolic process;1.14170329851461e-05!GO:0003697;single-stranded DNA binding;1.1754540538298e-05!GO:0003713;transcription coactivator activity;1.23427879994472e-05!GO:0006084;acetyl-CoA metabolic process;1.36462019785082e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;1.55847711465001e-05!GO:0005762;mitochondrial large ribosomal subunit;1.60370962749048e-05!GO:0000315;organellar large ribosomal subunit;1.60370962749048e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.94918435345474e-05!GO:0006606;protein import into nucleus;1.98782048255364e-05!GO:0006302;double-strand break repair;2.07258266369724e-05!GO:0009109;coenzyme catabolic process;2.09857402455483e-05!GO:0006793;phosphorus metabolic process;2.19250254663541e-05!GO:0006796;phosphate metabolic process;2.19250254663541e-05!GO:0000139;Golgi membrane;2.34845186674097e-05!GO:0000151;ubiquitin ligase complex;2.52027887638561e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.65992033204865e-05!GO:0005788;endoplasmic reticulum lumen;2.75513151967748e-05!GO:0007088;regulation of mitosis;3.4819929482187e-05!GO:0016491;oxidoreductase activity;3.64860768684423e-05!GO:0051168;nuclear export;3.75334325627211e-05!GO:0007010;cytoskeleton organization and biogenesis;4.05721674012121e-05!GO:0051427;hormone receptor binding;4.17263443757838e-05!GO:0000323;lytic vacuole;4.37477170156364e-05!GO:0005764;lysosome;4.37477170156364e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.00719693628331e-05!GO:0048519;negative regulation of biological process;5.25816998654078e-05!GO:0008094;DNA-dependent ATPase activity;5.27374931194074e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;5.39265993678183e-05!GO:0006612;protein targeting to membrane;5.79342335553947e-05!GO:0006839;mitochondrial transport;6.52448413106765e-05!GO:0003690;double-stranded DNA binding;6.59600063359132e-05!GO:0043021;ribonucleoprotein binding;7.53118380992883e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.17583783575961e-05!GO:0035257;nuclear hormone receptor binding;8.41071420628387e-05!GO:0000776;kinetochore;8.92489551750551e-05!GO:0051052;regulation of DNA metabolic process;0.000101288153528075!GO:0003899;DNA-directed RNA polymerase activity;0.00011697560180435!GO:0005525;GTP binding;0.000118535468737779!GO:0005798;Golgi-associated vesicle;0.000126334514941683!GO:0008186;RNA-dependent ATPase activity;0.000131507625123709!GO:0019899;enzyme binding;0.00013813443145457!GO:0042802;identical protein binding;0.000139484520869236!GO:0000314;organellar small ribosomal subunit;0.000150908855804142!GO:0005763;mitochondrial small ribosomal subunit;0.000150908855804142!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000164292053669547!GO:0016310;phosphorylation;0.000170499440755808!GO:0033116;ER-Golgi intermediate compartment membrane;0.000173186951350182!GO:0008250;oligosaccharyl transferase complex;0.000187186626810309!GO:0045786;negative regulation of progression through cell cycle;0.000188658276915959!GO:0030867;rough endoplasmic reticulum membrane;0.000190613122624279!GO:0006414;translational elongation;0.000208377904669242!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000208954520848268!GO:0003714;transcription corepressor activity;0.00021316202846608!GO:0048471;perinuclear region of cytoplasm;0.000213945036522703!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000269897884406125!GO:0006520;amino acid metabolic process;0.000275004915647236!GO:0051789;response to protein stimulus;0.000276853434557438!GO:0006986;response to unfolded protein;0.000276853434557438!GO:0050789;regulation of biological process;0.000277630693043108!GO:0031324;negative regulation of cellular metabolic process;0.000290753151847238!GO:0019752;carboxylic acid metabolic process;0.000293008407573972!GO:0016363;nuclear matrix;0.000296664286833766!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000333455786225757!GO:0006401;RNA catabolic process;0.000333678943867166!GO:0006402;mRNA catabolic process;0.000339012173385523!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00034151244356231!GO:0006352;transcription initiation;0.000350630563846693!GO:0004004;ATP-dependent RNA helicase activity;0.00036132351791754!GO:0008654;phospholipid biosynthetic process;0.000377250587892736!GO:0016564;transcription repressor activity;0.00039822764105051!GO:0006082;organic acid metabolic process;0.000399900335792162!GO:0045454;cell redox homeostasis;0.000414364309340118!GO:0004576;oligosaccharyl transferase activity;0.000418179290255706!GO:0046483;heterocycle metabolic process;0.000440460933133445!GO:0007059;chromosome segregation;0.000447937762567341!GO:0065009;regulation of a molecular function;0.000447937762567341!GO:0043681;protein import into mitochondrion;0.000447937762567341!GO:0005048;signal sequence binding;0.000471586157406172!GO:0048522;positive regulation of cellular process;0.000477202531124655!GO:0005874;microtubule;0.000514813831368009!GO:0005791;rough endoplasmic reticulum;0.000521844390024566!GO:0000786;nucleosome;0.000555133661223534!GO:0003729;mRNA binding;0.000585396737860664!GO:0030118;clathrin coat;0.000597152872200752!GO:0008033;tRNA processing;0.000604052322564859!GO:0031988;membrane-bound vesicle;0.000611313426434483!GO:0007017;microtubule-based process;0.000635123401477458!GO:0018196;peptidyl-asparagine modification;0.000656070892812644!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000656070892812644!GO:0006950;response to stress;0.000695622034103388!GO:0016023;cytoplasmic membrane-bound vesicle;0.000823522037630511!GO:0016126;sterol biosynthetic process;0.000826851397589737!GO:0031902;late endosome membrane;0.000863160260603558!GO:0009892;negative regulation of metabolic process;0.000863160260603558!GO:0051920;peroxiredoxin activity;0.000892376815320008!GO:0030176;integral to endoplasmic reticulum membrane;0.000902942549269113!GO:0003678;DNA helicase activity;0.000914070623556675!GO:0007093;mitotic cell cycle checkpoint;0.000923757805974034!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000929747078285321!GO:0008234;cysteine-type peptidase activity;0.000931801667426409!GO:0030880;RNA polymerase complex;0.000948509727927004!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00101877429224814!GO:0007052;mitotic spindle organization and biogenesis;0.00103478566150657!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00104511101501594!GO:0009165;nucleotide biosynthetic process;0.00105410005655834!GO:0008168;methyltransferase activity;0.00107629205084807!GO:0016741;transferase activity, transferring one-carbon groups;0.00107856794835297!GO:0007264;small GTPase mediated signal transduction;0.00114853529571228!GO:0032561;guanyl ribonucleotide binding;0.00115847930870867!GO:0019001;guanyl nucleotide binding;0.00115847930870867!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00116191526945438!GO:0006626;protein targeting to mitochondrion;0.00118181649246182!GO:0016853;isomerase activity;0.00119533193522039!GO:0030036;actin cytoskeleton organization and biogenesis;0.00132620743138563!GO:0030521;androgen receptor signaling pathway;0.0013765285671951!GO:0019222;regulation of metabolic process;0.00143683687552558!GO:0006310;DNA recombination;0.00148952820765973!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00151490035118924!GO:0015399;primary active transmembrane transporter activity;0.00151490035118924!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00154528598304353!GO:0030659;cytoplasmic vesicle membrane;0.0016241500341793!GO:0000059;protein import into nucleus, docking;0.00164536992887836!GO:0005684;U2-dependent spliceosome;0.00169605476629527!GO:0005769;early endosome;0.00170775969482348!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00174237836628908!GO:0000428;DNA-directed RNA polymerase complex;0.00174237836628908!GO:0048500;signal recognition particle;0.00190710265288249!GO:0005637;nuclear inner membrane;0.00192625427090526!GO:0000086;G2/M transition of mitotic cell cycle;0.00193550848566769!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00196930942517958!GO:0006275;regulation of DNA replication;0.00196930942517958!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00199724591437411!GO:0005885;Arp2/3 protein complex;0.00199724591437411!GO:0007243;protein kinase cascade;0.00207132338176396!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00210266914812436!GO:0005905;coated pit;0.00231191605069009!GO:0030658;transport vesicle membrane;0.00232145146681519!GO:0044452;nucleolar part;0.0024301557082906!GO:0016859;cis-trans isomerase activity;0.00264165089262293!GO:0016272;prefoldin complex;0.0027136662737401!GO:0006383;transcription from RNA polymerase III promoter;0.00271897290559482!GO:0016251;general RNA polymerase II transcription factor activity;0.00283916204441608!GO:0030663;COPI coated vesicle membrane;0.0028481032471813!GO:0030126;COPI vesicle coat;0.0028481032471813!GO:0006405;RNA export from nucleus;0.00287820486746048!GO:0003746;translation elongation factor activity;0.00295804938654327!GO:0006695;cholesterol biosynthetic process;0.00318965111116543!GO:0003682;chromatin binding;0.00318965111116543!GO:0048487;beta-tubulin binding;0.00336263186842105!GO:0015980;energy derivation by oxidation of organic compounds;0.00382516986865175!GO:0016044;membrane organization and biogenesis;0.00383228116992996!GO:0031252;leading edge;0.00386021095888054!GO:0006091;generation of precursor metabolites and energy;0.00386924114187081!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00390103554369433!GO:0015631;tubulin binding;0.00417012862208176!GO:0030029;actin filament-based process;0.00417216700663592!GO:0046489;phosphoinositide biosynthetic process;0.00432417268742269!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00434788225656752!GO:0045047;protein targeting to ER;0.00434788225656752!GO:0009116;nucleoside metabolic process;0.00441683226312413!GO:0051087;chaperone binding;0.00444034521600322!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00445566160553771!GO:0031982;vesicle;0.0044693621406161!GO:0030134;ER to Golgi transport vesicle;0.00452002430357509!GO:0044433;cytoplasmic vesicle part;0.00458907320703071!GO:0006611;protein export from nucleus;0.00458907320703071!GO:0006984;ER-nuclear signaling pathway;0.00469091687288408!GO:0008092;cytoskeletal protein binding;0.00476387612177185!GO:0031072;heat shock protein binding;0.00499155808647381!GO:0030137;COPI-coated vesicle;0.00504721339610281!GO:0000082;G1/S transition of mitotic cell cycle;0.00504721339610281!GO:0008139;nuclear localization sequence binding;0.00516729708742115!GO:0045893;positive regulation of transcription, DNA-dependent;0.00529607788147267!GO:0030660;Golgi-associated vesicle membrane;0.0053020802881281!GO:0008312;7S RNA binding;0.00542656838548217!GO:0009967;positive regulation of signal transduction;0.00554940839145921!GO:0006519;amino acid and derivative metabolic process;0.005634667557063!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00593901495363509!GO:0012506;vesicle membrane;0.00598587274860642!GO:0030119;AP-type membrane coat adaptor complex;0.00598587274860642!GO:0000049;tRNA binding;0.00605370068636065!GO:0046983;protein dimerization activity;0.0061653336092494!GO:0030127;COPII vesicle coat;0.00618534377087977!GO:0012507;ER to Golgi transport vesicle membrane;0.00618534377087977!GO:0043596;nuclear replication fork;0.00631270965005037!GO:0000922;spindle pole;0.00641913603865542!GO:0045941;positive regulation of transcription;0.00652219976157735!GO:0043022;ribosome binding;0.00676269484944326!GO:0031410;cytoplasmic vesicle;0.00676269484944326!GO:0006891;intra-Golgi vesicle-mediated transport;0.00693503739559165!GO:0035258;steroid hormone receptor binding;0.00745265793445065!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00750709664321478!GO:0005876;spindle microtubule;0.00759702701579868!GO:0051101;regulation of DNA binding;0.00760122532462059!GO:0030131;clathrin adaptor complex;0.00812010401230029!GO:0003684;damaged DNA binding;0.00813228086720034!GO:0043433;negative regulation of transcription factor activity;0.00817329467233273!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00825260411696179!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00825260411696179!GO:0019843;rRNA binding;0.00855376660422897!GO:0048468;cell development;0.0086445997572171!GO:0008361;regulation of cell size;0.00875006864748601!GO:0032508;DNA duplex unwinding;0.00922217662274396!GO:0032392;DNA geometric change;0.00922217662274396!GO:0000725;recombinational repair;0.0092370539626167!GO:0000724;double-strand break repair via homologous recombination;0.0092370539626167!GO:0005774;vacuolar membrane;0.00923959200296599!GO:0030518;steroid hormone receptor signaling pathway;0.00927181236710124!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00940134793840747!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00968385263719644!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0105259601378821!GO:0016584;nucleosome positioning;0.010884632929341!GO:0004527;exonuclease activity;0.0110157451737492!GO:0004197;cysteine-type endopeptidase activity;0.0110521461605371!GO:0006807;nitrogen compound metabolic process;0.011200415319426!GO:0051098;regulation of binding;0.0113189991508413!GO:0006730;one-carbon compound metabolic process;0.0114412970120756!GO:0006740;NADPH regeneration;0.0115203265471926!GO:0006098;pentose-phosphate shunt;0.0115203265471926!GO:0006672;ceramide metabolic process;0.0116333940382698!GO:0032259;methylation;0.0116659767785768!GO:0046474;glycerophospholipid biosynthetic process;0.0116677346147766!GO:0051338;regulation of transferase activity;0.0117389495430192!GO:0044262;cellular carbohydrate metabolic process;0.0117465263347116!GO:0051252;regulation of RNA metabolic process;0.0118424297566582!GO:0031968;organelle outer membrane;0.011908936599477!GO:0008022;protein C-terminus binding;0.0121101863930869!GO:0007006;mitochondrial membrane organization and biogenesis;0.0124656447805274!GO:0051540;metal cluster binding;0.0124706169347569!GO:0051536;iron-sulfur cluster binding;0.0124706169347569!GO:0051059;NF-kappaB binding;0.0127212900080763!GO:0006220;pyrimidine nucleotide metabolic process;0.0127248032938115!GO:0046519;sphingoid metabolic process;0.0129457959496643!GO:0005832;chaperonin-containing T-complex;0.0131126451534645!GO:0004674;protein serine/threonine kinase activity;0.0131126451534645!GO:0043488;regulation of mRNA stability;0.0131126451534645!GO:0043487;regulation of RNA stability;0.0131126451534645!GO:0046467;membrane lipid biosynthetic process;0.0131235904405829!GO:0050790;regulation of catalytic activity;0.0131235904405829!GO:0043284;biopolymer biosynthetic process;0.0132856880995992!GO:0006007;glucose catabolic process;0.0133382088426003!GO:0043492;ATPase activity, coupled to movement of substances;0.013540340185777!GO:0019867;outer membrane;0.0136456089909093!GO:0000819;sister chromatid segregation;0.0138771604013143!GO:0008610;lipid biosynthetic process;0.0138771604013143!GO:0016049;cell growth;0.0139037817511324!GO:0009112;nucleobase metabolic process;0.0140622601480884!GO:0009308;amine metabolic process;0.0141099353424992!GO:0031124;mRNA 3'-end processing;0.01414276458898!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.01414276458898!GO:0015002;heme-copper terminal oxidase activity;0.01414276458898!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.01414276458898!GO:0004129;cytochrome-c oxidase activity;0.01414276458898!GO:0006268;DNA unwinding during replication;0.0145736679687136!GO:0000152;nuclear ubiquitin ligase complex;0.0146212564788252!GO:0046128;purine ribonucleoside metabolic process;0.0146456089903539!GO:0042278;purine nucleoside metabolic process;0.0146456089903539!GO:0007050;cell cycle arrest;0.0147187649603886!GO:0009119;ribonucleoside metabolic process;0.0148780905977486!GO:0006376;mRNA splice site selection;0.0155696421914177!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0155696421914177!GO:0031529;ruffle organization and biogenesis;0.0155930145920768!GO:0000070;mitotic sister chromatid segregation;0.0159333974293492!GO:0016197;endosome transport;0.0165246098234237!GO:0006818;hydrogen transport;0.0166501452318809!GO:0006378;mRNA polyadenylation;0.0167304174327087!GO:0015992;proton transport;0.01680559691395!GO:0000228;nuclear chromosome;0.0171129224945744!GO:0030125;clathrin vesicle coat;0.0172947335734588!GO:0030665;clathrin coated vesicle membrane;0.0172947335734588!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0173602455871876!GO:0030132;clathrin coat of coated pit;0.0176775874657898!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0178794066932062!GO:0051053;negative regulation of DNA metabolic process;0.0178881548221198!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0180046126520821!GO:0008538;proteasome activator activity;0.0183243984725557!GO:0016791;phosphoric monoester hydrolase activity;0.0183243984725557!GO:0006769;nicotinamide metabolic process;0.0183243984725557!GO:0006144;purine base metabolic process;0.0186454228916868!GO:0030133;transport vesicle;0.0192226869271661!GO:0043549;regulation of kinase activity;0.0197515637780388!GO:0016481;negative regulation of transcription;0.020125299581381!GO:0008097;5S rRNA binding;0.020184085431929!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.020268710999096!GO:0050662;coenzyme binding;0.0203187622896515!GO:0008632;apoptotic program;0.0203187622896515!GO:0006497;protein amino acid lipidation;0.0203187622896515!GO:0046426;negative regulation of JAK-STAT cascade;0.0203734379305688!GO:0044437;vacuolar part;0.0204842799931256!GO:0033673;negative regulation of kinase activity;0.0205582674955644!GO:0006469;negative regulation of protein kinase activity;0.0205582674955644!GO:0007034;vacuolar transport;0.0205582674955644!GO:0003711;transcription elongation regulator activity;0.020786283526615!GO:0048518;positive regulation of biological process;0.0207971555434235!GO:0006595;polyamine metabolic process;0.0210826869841671!GO:0043414;biopolymer methylation;0.0211523255585047!GO:0031323;regulation of cellular metabolic process;0.0212240438095321!GO:0006767;water-soluble vitamin metabolic process;0.021286576134843!GO:0051539;4 iron, 4 sulfur cluster binding;0.0212899298862984!GO:0007021;tubulin folding;0.0215174626067621!GO:0007041;lysosomal transport;0.0216604511036407!GO:0043601;nuclear replisome;0.0216734972744872!GO:0030894;replisome;0.0216734972744872!GO:0046365;monosaccharide catabolic process;0.0218502010838979!GO:0008180;signalosome;0.0221516242335902!GO:0005765;lysosomal membrane;0.0225157826652256!GO:0006338;chromatin remodeling;0.0227138258028061!GO:0031625;ubiquitin protein ligase binding;0.0227430582692361!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0229602970367841!GO:0048037;cofactor binding;0.0230649882422974!GO:0005996;monosaccharide metabolic process;0.0231202610245945!GO:0019318;hexose metabolic process;0.0231202610245945!GO:0016408;C-acyltransferase activity;0.0240008941114172!GO:0051348;negative regulation of transferase activity;0.0243062917576361!GO:0004448;isocitrate dehydrogenase activity;0.0249311478790514!GO:0006509;membrane protein ectodomain proteolysis;0.0249684305997654!GO:0033619;membrane protein proteolysis;0.0249684305997654!GO:0018193;peptidyl-amino acid modification;0.0250503191354569!GO:0005669;transcription factor TFIID complex;0.0253980377486217!GO:0005741;mitochondrial outer membrane;0.0256868891682692!GO:0004185;serine carboxypeptidase activity;0.0258138123056257!GO:0004003;ATP-dependent DNA helicase activity;0.0259045119668647!GO:0005869;dynactin complex;0.0261292766210941!GO:0043130;ubiquitin binding;0.0268455056756206!GO:0032182;small conjugating protein binding;0.0268455056756206!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0268927996622282!GO:0000118;histone deacetylase complex;0.026996246250492!GO:0043189;H4/H2A histone acetyltransferase complex;0.027172008234338!GO:0000792;heterochromatin;0.0280044111329431!GO:0008320;protein transmembrane transporter activity;0.0280939551738667!GO:0005784;translocon complex;0.028455139656886!GO:0022890;inorganic cation transmembrane transporter activity;0.0287995307655302!GO:0022884;macromolecule transmembrane transporter activity;0.0289932907478939!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0289932907478939!GO:0005875;microtubule associated complex;0.029070784710423!GO:0050681;androgen receptor binding;0.0291161664767012!GO:0006506;GPI anchor biosynthetic process;0.029667356180771!GO:0051656;establishment of organelle localization;0.029667356180771!GO:0003756;protein disulfide isomerase activity;0.029667356180771!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.029667356180771!GO:0000339;RNA cap binding;0.0297634089985689!GO:0001558;regulation of cell growth;0.0297634089985689!GO:0042393;histone binding;0.029839678870358!GO:0006270;DNA replication initiation;0.0303386233730648!GO:0032200;telomere organization and biogenesis;0.0306433556240886!GO:0000723;telomere maintenance;0.0306433556240886!GO:0033239;negative regulation of amine metabolic process;0.0308808654935925!GO:0045763;negative regulation of amino acid metabolic process;0.0308808654935925!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0308808654935925!GO:0006360;transcription from RNA polymerase I promoter;0.0315494784660067!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0320757684816081!GO:0019320;hexose catabolic process;0.0320903396372206!GO:0030522;intracellular receptor-mediated signaling pathway;0.0322214545523456!GO:0006350;transcription;0.0326542924286825!GO:0006400;tRNA modification;0.0327171255338098!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0329393886189198!GO:0000303;response to superoxide;0.0330942748733209!GO:0042770;DNA damage response, signal transduction;0.0336352416126401!GO:0030031;cell projection biogenesis;0.0336673196015977!GO:0045792;negative regulation of cell size;0.033913801620888!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.034104708974343!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0349173145559561!GO:0000123;histone acetyltransferase complex;0.035134170319997!GO:0030384;phosphoinositide metabolic process;0.0355974906498399!GO:0005680;anaphase-promoting complex;0.0356330411013911!GO:0005663;DNA replication factor C complex;0.0357720635001393!GO:0000209;protein polyubiquitination;0.0357720635001393!GO:0016485;protein processing;0.0359811694727654!GO:0019783;small conjugating protein-specific protease activity;0.0361970708703029!GO:0031901;early endosome membrane;0.0364630784169918!GO:0004721;phosphoprotein phosphatase activity;0.0364630784169918!GO:0044454;nuclear chromosome part;0.0364630784169918!GO:0043065;positive regulation of apoptosis;0.036685129135789!GO:0006417;regulation of translation;0.0368018696080039!GO:0046966;thyroid hormone receptor binding;0.0379231009687439!GO:0035267;NuA4 histone acetyltransferase complex;0.0381902041230959!GO:0044438;microbody part;0.0382716345728841!GO:0044439;peroxisomal part;0.0382716345728841!GO:0030968;unfolded protein response;0.0383995477596734!GO:0046164;alcohol catabolic process;0.0383995477596734!GO:0004518;nuclease activity;0.0387263707946402!GO:0005758;mitochondrial intermembrane space;0.0393088303147511!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0396037124294197!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0396037124294197!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0396037124294197!GO:0008286;insulin receptor signaling pathway;0.0396037124294197!GO:0042158;lipoprotein biosynthetic process;0.0401604664710665!GO:0000096;sulfur amino acid metabolic process;0.0414260716732349!GO:0005938;cell cortex;0.0414831412804699!GO:0006650;glycerophospholipid metabolic process;0.0415152604713493!GO:0006505;GPI anchor metabolic process;0.0415518941903527!GO:0006516;glycoprotein catabolic process;0.0425648761941467!GO:0006066;alcohol metabolic process;0.0425648761941467!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0428627239613593!GO:0045859;regulation of protein kinase activity;0.0428842923434118!GO:0004843;ubiquitin-specific protease activity;0.0429276571051021!GO:0040029;regulation of gene expression, epigenetic;0.0429928272266674!GO:0043550;regulation of lipid kinase activity;0.0430754713995542!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0434384724183016!GO:0007004;telomere maintenance via telomerase;0.0435315326317406!GO:0030308;negative regulation of cell growth;0.0437941182624509!GO:0008156;negative regulation of DNA replication;0.0444989083363266!GO:0031123;RNA 3'-end processing;0.0446886588530611!GO:0004680;casein kinase activity;0.0447063856705616!GO:0005521;lamin binding;0.0449975383426928!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0464877996372031!GO:0008017;microtubule binding;0.0465158327853307!GO:0043068;positive regulation of programmed cell death;0.0466800832658569!GO:0065007;biological regulation;0.0467578362421665!GO:0003923;GPI-anchor transamidase activity;0.047291302211896!GO:0016255;attachment of GPI anchor to protein;0.047291302211896!GO:0042765;GPI-anchor transamidase complex;0.047291302211896!GO:0007030;Golgi organization and biogenesis;0.0475896010773988!GO:0008537;proteasome activator complex;0.048948482217067 | |||
|sample_id=10636 | |sample_id=10636 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=endometrium | |sample_tissue=endometrium | ||
|top_motifs=SNAI1..3:1.90292018994;HNF1A:1.82633240895;NKX2-3_NKX2-5:1.72813870346;ZEB1:1.69139506971;NFY{A,B,C}:1.65350091512;CDC5L:1.64433112715;RXRA_VDR{dimer}:1.32106577666;PDX1:1.29701467198;FOXQ1:1.27351613932;STAT5{A,B}:1.21475586895;RFX1:1.20361948738;HOX{A5,B5}:1.17510860655;ADNP_IRX_SIX_ZHX:1.15540009274;E2F1..5:1.08816727736;MYOD1:1.05166042698;MYB:1.04219406932;POU1F1:1.00636488554;NKX2-1,4:0.976953803305;PITX1..3:0.911069097234;TBX4,5:0.906449226764;TEAD1:0.884713013686;ZNF423:0.875412748106;SRF:0.863155514894;FOXN1:0.859276674297;NR6A1:0.847301015564;FOXL1:0.840632385312;HIF1A:0.833108783401;ALX1:0.782019128107;NKX6-1,2:0.710296914922;RFX2..5_RFXANK_RFXAP:0.707112927321;GFI1:0.704254456842;SOX17:0.699009474237;ESRRA:0.68119015117;ZBTB16:0.662518164685;FOXA2:0.659439005603;BPTF:0.61362469435;PAX8:0.609391241728;NKX3-2:0.57441695816;AHR_ARNT_ARNT2:0.529625705692;CUX2:0.515533377833;IKZF1:0.494823605277;GFI1B:0.492235171296;TEF:0.478117477536;LHX3,4:0.465497314377;ESR1:0.436562984779;NFKB1_REL_RELA:0.40448000888;POU2F1..3:0.40076904608;FOXP1:0.389609955143;ELK1,4_GABP{A,B1}:0.388540846385;ONECUT1,2:0.363346186088;SOX2:0.358472112785;AIRE:0.354668213452;HBP1_HMGB_SSRP1_UBTF:0.344748427668;ARID5B:0.34098986116;GCM1,2:0.340554566644;FOSL2:0.319516244502;NFE2:0.311618277211;TOPORS:0.310414320883;HNF4A_NR2F1,2:0.300332303164;XBP1:0.273471412152;FOX{D1,D2}:0.246722449712;GZF1:0.245608456215;VSX1,2:0.24559342202;LEF1_TCF7_TCF7L1,2:0.244374723189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.224091226522;NKX3-1:0.219376202439;OCT4_SOX2{dimer}:0.218225698976;POU3F1..4:0.216143476037;FOX{I1,J2}:0.214061412946;TBP:0.206448363331;STAT2,4,6:0.2031468456;HAND1,2:0.175216400109;RORA:0.174877117926;bHLH_family:0.168681963717;NFIX:0.165962564217;NRF1:0.155886779421;ATF4:0.154348811231;EBF1:0.151163468608;PAX1,9:0.14484237307;CEBPA,B_DDIT3:0.12943316787;LMO2:0.124475728863;PBX1:0.123316392639;ATF5_CREB3:0.122806021489;ATF6:0.12049975535;RBPJ:0.113460299269;FOS_FOS{B,L1}_JUN{B,D}:0.10679944565;HMGA1,2:0.104175581796;IRF7:0.102078680847;SOX{8,9,10}:0.0690009271101;BACH2:0.0414053410139;CRX:0.031549663762;ZNF143:0.0234397962388;HSF1,2:0.0183667723045;NFE2L2:0.00956945085736;NR5A1,2:0.00946474981146;TFDP1:-0.00304181083192;TLX1..3_NFIC{dimer}:-0.02206727749;NFE2L1:-0.0223360151818;EN1,2:-0.0314000927225;XCPE1{core}:-0.0324751599878;PAX3,7:-0.0733220360931;ATF2:-0.0793487664336;YY1:-0.0864661082683;FOXD3:-0.0951029857027;SP1:-0.135134480919;TAL1_TCF{3,4,12}:-0.14529856207;PAX6:-0.145646863307;BREu{core}:-0.175261164628;GLI1..3:-0.195074538056;UFEwm:-0.205108764099;HOXA9_MEIS1:-0.231352650394;FOXO1,3,4:-0.24256894514;AR:-0.249349678737;HLF:-0.287144743419;NKX2-2,8:-0.287420185261;HOX{A4,D4}:-0.299432854551;EP300:-0.310065699328;NR1H4:-0.316546710633;ALX4:-0.319250427827;FOX{F1,F2,J1}:-0.324919365324;ELF1,2,4:-0.325703506567;MTF1:-0.334121541116;SREBF1,2:-0.33747657522;FOXM1:-0.341104272293;MED-1{core}:-0.368155627608;TFAP2{A,C}:-0.372342593925;MEF2{A,B,C,D}:-0.394048642797;MTE{core}:-0.401644377259;IRF1,2:-0.407603595407;GATA6:-0.413828571244;CREB1:-0.418127185397;TFCP2:-0.434630164652;ZNF148:-0.452711260575;POU5F1:-0.467315046388;SOX5:-0.477573554978;JUN:-0.481536556583;DBP:-0.497784678552;ETS1,2:-0.499667215087;SPIB:-0.511241144644;ZNF384:-0.530531440095;PPARG:-0.530557655749;NFIL3:-0.533597117933;HOX{A6,A7,B6,B7}:-0.545714782776;TP53:-0.553472023364;DMAP1_NCOR{1,2}_SMARC:-0.582756102639;HIC1:-0.601225128515;GTF2I:-0.614652014343;PAX4:-0.614999492316;ZFP161:-0.616036925116;MYBL2:-0.623954988985;IKZF2:-0.624936135911;RUNX1..3:-0.633646713532;POU6F1:-0.637059131262;KLF4:-0.655342730955;MAZ:-0.65783260018;MZF1:-0.659792461432;FOXP3:-0.679717762695;EVI1:-0.689299863788;SPI1:-0.692585624434;EGR1..3:-0.715334019244;MYFfamily:-0.734328963245;PAX2:-0.734933818289;PATZ1:-0.74238602147;REST:-0.79124854314;ZIC1..3:-0.803731747682;NANOG{mouse}:-0.820956009215;TFAP2B:-0.830170758473;NANOG:-0.836545621447;PRDM1:-0.849035342129;HES1:-0.886651861484;RREB1:-0.983879570259;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.00142871369;HMX1:-1.00714724023;ZBTB6:-1.02096890904;PRRX1,2:-1.04227468729;MAFB:-1.1243787988;NFATC1..3:-1.14863379248;CDX1,2,4:-1.17499392805;T:-1.18406137232;GTF2A1,2:-1.18716787372;SMAD1..7,9:-1.19912586439;PAX5:-1.24732860483;NR3C1:-1.28298512025;STAT1,3:-1.31204125265;TFAP4:-1.32610628393;RXR{A,B,G}:-1.3364374819;TLX2:-1.35415126292;NHLH1,2:-1.38847005605;ZNF238:-1.44538766518;TGIF1:-1.51886823882;GATA4:-1.68194463858;SPZ1:-1.71921219449 | |top_motifs=SNAI1..3:1.90292018994;HNF1A:1.82633240895;NKX2-3_NKX2-5:1.72813870346;ZEB1:1.69139506971;NFY{A,B,C}:1.65350091512;CDC5L:1.64433112715;RXRA_VDR{dimer}:1.32106577666;PDX1:1.29701467198;FOXQ1:1.27351613932;STAT5{A,B}:1.21475586895;RFX1:1.20361948738;HOX{A5,B5}:1.17510860655;ADNP_IRX_SIX_ZHX:1.15540009274;E2F1..5:1.08816727736;MYOD1:1.05166042698;MYB:1.04219406932;POU1F1:1.00636488554;NKX2-1,4:0.976953803305;PITX1..3:0.911069097234;TBX4,5:0.906449226764;TEAD1:0.884713013686;ZNF423:0.875412748106;SRF:0.863155514894;FOXN1:0.859276674297;NR6A1:0.847301015564;FOXL1:0.840632385312;HIF1A:0.833108783401;ALX1:0.782019128107;NKX6-1,2:0.710296914922;RFX2..5_RFXANK_RFXAP:0.707112927321;GFI1:0.704254456842;SOX17:0.699009474237;ESRRA:0.68119015117;ZBTB16:0.662518164685;FOXA2:0.659439005603;BPTF:0.61362469435;PAX8:0.609391241728;NKX3-2:0.57441695816;AHR_ARNT_ARNT2:0.529625705692;CUX2:0.515533377833;IKZF1:0.494823605277;GFI1B:0.492235171296;TEF:0.478117477536;LHX3,4:0.465497314377;ESR1:0.436562984779;NFKB1_REL_RELA:0.40448000888;POU2F1..3:0.40076904608;FOXP1:0.389609955143;ELK1,4_GABP{A,B1}:0.388540846385;ONECUT1,2:0.363346186088;SOX2:0.358472112785;AIRE:0.354668213452;HBP1_HMGB_SSRP1_UBTF:0.344748427668;ARID5B:0.34098986116;GCM1,2:0.340554566644;FOSL2:0.319516244502;NFE2:0.311618277211;TOPORS:0.310414320883;HNF4A_NR2F1,2:0.300332303164;XBP1:0.273471412152;FOX{D1,D2}:0.246722449712;GZF1:0.245608456215;VSX1,2:0.24559342202;LEF1_TCF7_TCF7L1,2:0.244374723189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.224091226522;NKX3-1:0.219376202439;OCT4_SOX2{dimer}:0.218225698976;POU3F1..4:0.216143476037;FOX{I1,J2}:0.214061412946;TBP:0.206448363331;STAT2,4,6:0.2031468456;HAND1,2:0.175216400109;RORA:0.174877117926;bHLH_family:0.168681963717;NFIX:0.165962564217;NRF1:0.155886779421;ATF4:0.154348811231;EBF1:0.151163468608;PAX1,9:0.14484237307;CEBPA,B_DDIT3:0.12943316787;LMO2:0.124475728863;PBX1:0.123316392639;ATF5_CREB3:0.122806021489;ATF6:0.12049975535;RBPJ:0.113460299269;FOS_FOS{B,L1}_JUN{B,D}:0.10679944565;HMGA1,2:0.104175581796;IRF7:0.102078680847;SOX{8,9,10}:0.0690009271101;BACH2:0.0414053410139;CRX:0.031549663762;ZNF143:0.0234397962388;HSF1,2:0.0183667723045;NFE2L2:0.00956945085736;NR5A1,2:0.00946474981146;TFDP1:-0.00304181083192;TLX1..3_NFIC{dimer}:-0.02206727749;NFE2L1:-0.0223360151818;EN1,2:-0.0314000927225;XCPE1{core}:-0.0324751599878;PAX3,7:-0.0733220360931;ATF2:-0.0793487664336;YY1:-0.0864661082683;FOXD3:-0.0951029857027;SP1:-0.135134480919;TAL1_TCF{3,4,12}:-0.14529856207;PAX6:-0.145646863307;BREu{core}:-0.175261164628;GLI1..3:-0.195074538056;UFEwm:-0.205108764099;HOXA9_MEIS1:-0.231352650394;FOXO1,3,4:-0.24256894514;AR:-0.249349678737;HLF:-0.287144743419;NKX2-2,8:-0.287420185261;HOX{A4,D4}:-0.299432854551;EP300:-0.310065699328;NR1H4:-0.316546710633;ALX4:-0.319250427827;FOX{F1,F2,J1}:-0.324919365324;ELF1,2,4:-0.325703506567;MTF1:-0.334121541116;SREBF1,2:-0.33747657522;FOXM1:-0.341104272293;MED-1{core}:-0.368155627608;TFAP2{A,C}:-0.372342593925;MEF2{A,B,C,D}:-0.394048642797;MTE{core}:-0.401644377259;IRF1,2:-0.407603595407;GATA6:-0.413828571244;CREB1:-0.418127185397;TFCP2:-0.434630164652;ZNF148:-0.452711260575;POU5F1:-0.467315046388;SOX5:-0.477573554978;JUN:-0.481536556583;DBP:-0.497784678552;ETS1,2:-0.499667215087;SPIB:-0.511241144644;ZNF384:-0.530531440095;PPARG:-0.530557655749;NFIL3:-0.533597117933;HOX{A6,A7,B6,B7}:-0.545714782776;TP53:-0.553472023364;DMAP1_NCOR{1,2}_SMARC:-0.582756102639;HIC1:-0.601225128515;GTF2I:-0.614652014343;PAX4:-0.614999492316;ZFP161:-0.616036925116;MYBL2:-0.623954988985;IKZF2:-0.624936135911;RUNX1..3:-0.633646713532;POU6F1:-0.637059131262;KLF4:-0.655342730955;MAZ:-0.65783260018;MZF1:-0.659792461432;FOXP3:-0.679717762695;EVI1:-0.689299863788;SPI1:-0.692585624434;EGR1..3:-0.715334019244;MYFfamily:-0.734328963245;PAX2:-0.734933818289;PATZ1:-0.74238602147;REST:-0.79124854314;ZIC1..3:-0.803731747682;NANOG{mouse}:-0.820956009215;TFAP2B:-0.830170758473;NANOG:-0.836545621447;PRDM1:-0.849035342129;HES1:-0.886651861484;RREB1:-0.983879570259;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.00142871369;HMX1:-1.00714724023;ZBTB6:-1.02096890904;PRRX1,2:-1.04227468729;MAFB:-1.1243787988;NFATC1..3:-1.14863379248;CDX1,2,4:-1.17499392805;T:-1.18406137232;GTF2A1,2:-1.18716787372;SMAD1..7,9:-1.19912586439;PAX5:-1.24732860483;NR3C1:-1.28298512025;STAT1,3:-1.31204125265;TFAP4:-1.32610628393;RXR{A,B,G}:-1.3364374819;TLX2:-1.35415126292;NHLH1,2:-1.38847005605;ZNF238:-1.44538766518;TGIF1:-1.51886823882;GATA4:-1.68194463858;SPZ1:-1.71921219449 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10636-108I6;search_select_hide=table117:FF:10636-108I6 | |||
}} | }} | ||
Latest revision as of 14:32, 3 June 2020
| Name: | clear cell carcinoma cell line:TEN |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11930 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11930
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11930
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.19 |
| 10 | 10 | 0.141 |
| 100 | 100 | 0.032 |
| 101 | 101 | 0.857 |
| 102 | 102 | 0.932 |
| 103 | 103 | 0.578 |
| 104 | 104 | 0.553 |
| 105 | 105 | 0.98 |
| 106 | 106 | 0.992 |
| 107 | 107 | 0.98 |
| 108 | 108 | 0.577 |
| 109 | 109 | 0.0935 |
| 11 | 11 | 0.764 |
| 110 | 110 | 0.169 |
| 111 | 111 | 0.789 |
| 112 | 112 | 0.557 |
| 113 | 113 | 0.195 |
| 114 | 114 | 0.602 |
| 115 | 115 | 0.114 |
| 116 | 116 | 0.649 |
| 117 | 117 | 0.106 |
| 118 | 118 | 0.148 |
| 119 | 119 | 0.646 |
| 12 | 12 | 0.0498 |
| 120 | 120 | 0.598 |
| 121 | 121 | 0.95 |
| 122 | 122 | 0.968 |
| 123 | 123 | 0.514 |
| 124 | 124 | 0.251 |
| 125 | 125 | 0.829 |
| 126 | 126 | 0.0537 |
| 127 | 127 | 0.205 |
| 128 | 128 | 0.0209 |
| 129 | 129 | 0.168 |
| 13 | 13 | 1.01952e-4 |
| 130 | 130 | 0.557 |
| 131 | 131 | 0.17 |
| 132 | 132 | 0.331 |
| 133 | 133 | 0.133 |
| 134 | 134 | 0.064 |
| 135 | 135 | 0.0918 |
| 136 | 136 | 0.0477 |
| 137 | 137 | 0.467 |
| 138 | 138 | 0.0253 |
| 139 | 139 | 1.38749e-4 |
| 14 | 14 | 0.833 |
| 140 | 140 | 0.556 |
| 141 | 141 | 0.485 |
| 142 | 142 | 0.911 |
| 143 | 143 | 0.00201 |
| 144 | 144 | 0.435 |
| 145 | 145 | 0.451 |
| 146 | 146 | 0.499 |
| 147 | 147 | 0.913 |
| 148 | 148 | 0.88 |
| 149 | 149 | 0.302 |
| 15 | 15 | 0.434 |
| 150 | 150 | 0.517 |
| 151 | 151 | 0.8 |
| 152 | 152 | 0.461 |
| 153 | 153 | 0.998 |
| 154 | 154 | 0.734 |
| 155 | 155 | 0.884 |
| 156 | 156 | 0.518 |
| 157 | 157 | 0.267 |
| 158 | 158 | 0.236 |
| 159 | 159 | 0.338 |
| 16 | 16 | 0.401 |
| 160 | 160 | 0.56 |
| 161 | 161 | 0.947 |
| 162 | 162 | 0.55 |
| 163 | 163 | 0.917 |
| 164 | 164 | 0.372 |
| 165 | 165 | 0.676 |
| 166 | 166 | 0.825 |
| 167 | 167 | 0.158 |
| 168 | 168 | 0.492 |
| 169 | 169 | 0.583 |
| 17 | 17 | 0.606 |
| 18 | 18 | 0.0464 |
| 19 | 19 | 0.997 |
| 2 | 2 | 0.391 |
| 20 | 20 | 0.0784 |
| 21 | 21 | 0.34 |
| 22 | 22 | 0.892 |
| 23 | 23 | 0.547 |
| 24 | 24 | 0.204 |
| 25 | 25 | 0.551 |
| 26 | 26 | 0.0666 |
| 27 | 27 | 0.436 |
| 28 | 28 | 0.223 |
| 29 | 29 | 0.154 |
| 3 | 3 | 0.65 |
| 30 | 30 | 0.816 |
| 31 | 31 | 0.17 |
| 32 | 32 | 0.0185 |
| 33 | 33 | 0.00893 |
| 34 | 34 | 0.108 |
| 35 | 35 | 0.375 |
| 36 | 36 | 0.0886 |
| 37 | 37 | 0.713 |
| 38 | 38 | 0.838 |
| 39 | 39 | 0.53 |
| 4 | 4 | 0.476 |
| 40 | 40 | 0.0185 |
| 41 | 41 | 0.141 |
| 42 | 42 | 0.968 |
| 43 | 43 | 0.798 |
| 44 | 44 | 0.751 |
| 45 | 45 | 0.947 |
| 46 | 46 | 0.768 |
| 47 | 47 | 0.243 |
| 48 | 48 | 0.781 |
| 49 | 49 | 0.834 |
| 5 | 5 | 0.665 |
| 50 | 50 | 0.809 |
| 51 | 51 | 0.92 |
| 52 | 52 | 0.977 |
| 53 | 53 | 0.973 |
| 54 | 54 | 0.502 |
| 55 | 55 | 0.823 |
| 56 | 56 | 0.991 |
| 57 | 57 | 0.385 |
| 58 | 58 | 0.531 |
| 59 | 59 | 0.937 |
| 6 | 6 | 0.19 |
| 60 | 60 | 0.973 |
| 61 | 61 | 0.22 |
| 62 | 62 | 0.86 |
| 63 | 63 | 0.321 |
| 64 | 64 | 0.867 |
| 65 | 65 | 0.241 |
| 66 | 66 | 0.0105 |
| 67 | 67 | 0.938 |
| 68 | 68 | 1.0466e-5 |
| 69 | 69 | 0.586 |
| 7 | 7 | 0.121 |
| 70 | 70 | 0.312 |
| 71 | 71 | 0.0863 |
| 72 | 72 | 0.61 |
| 73 | 73 | 0.589 |
| 74 | 74 | 0.242 |
| 75 | 75 | 0.178 |
| 76 | 76 | 0.6 |
| 77 | 77 | 0.129 |
| 78 | 78 | 0.691 |
| 79 | 79 | 0.0302 |
| 8 | 8 | 0.688 |
| 80 | 80 | 0.103 |
| 81 | 81 | 0.537 |
| 82 | 82 | 0.034 |
| 83 | 83 | 0.92 |
| 84 | 84 | 0.869 |
| 85 | 85 | 0.0576 |
| 86 | 86 | 0.959 |
| 87 | 87 | 0.0565 |
| 88 | 88 | 0.86 |
| 89 | 89 | 0.798 |
| 9 | 9 | 0.194 |
| 90 | 90 | 0.398 |
| 91 | 91 | 0.0214 |
| 92 | 92 | 0.361 |
| 93 | 93 | 0.598 |
| 94 | 94 | 0.0353 |
| 95 | 95 | 0.163 |
| 96 | 96 | 0.715 |
| 97 | 97 | 0.897 |
| 98 | 98 | 0.665 |
| 99 | 99 | 0.537 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11930
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102787 clear cell adenocarcinoma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
4468 (clear cell adenocarcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0102787 (clear cell adenocarcinoma cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
