FF:10607-108F4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005446 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL: | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005446 | ||
|ancestors_in_disease_facet=DOID: | |accession_numbers=CAGE;DRX007962;DRR008834;DRZ000259;DRZ001644;DRZ011609;DRZ012994 | ||
|accession_numbers_RNASeq=RNA-Seq;DRX057132;DRR062891;DRZ007967 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000013,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000333,CL:0000003,CL:0000548,CL:0002321,CL:0000219,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:171,DOID:3095,DOID:2994,DOID:169 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100932 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100932 | |fonse_cell_line=FF:0100932 | ||
|fonse_cell_line_closure=FF:0100932 | |fonse_cell_line_closure=FF:0100932 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNBsusSR.CNhs11818.10607-108F4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNBsusSR.CNhs11818.10607-108F4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNBsusSR.CNhs11818.10607-108F4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNBsusSR.CNhs11818.10607-108F4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNBsusSR.CNhs11818.10607-108F4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10607-108F4 | |id=FF:10607-108F4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100932 | ||
|is_obsolete= | |||
|library_id=CNhs11818 | |||
|library_id_phase_based=2:CNhs11818 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10607 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10607 | |||
|name=neuroblastoma cell line:NBsusSR | |name=neuroblastoma cell line:NBsusSR | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11818,LSID829,release010,COMPLETED | |profile_hcage=CNhs11818,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0968848579896196,0.0634331720967665,-0.158591007896309,0.0318542895888921,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0145251466159382,0,0.263104299073644,0,0,0,0.285029992791009,0,0,0.0348915671855035,0,0,0,0,0,0,0,0,0,0.0634331720967665,0,0,-0.06197563848383,0.0157960614358476,0,0,0,0,0,0,0,0.0075015649355489,0,0,0,0,1.37950181276728,0,0,0.313389934710938,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0087015223968201,0,0,0,0,0,0,0,0,0,0,-0.153858962782485,-0.0535000060270818,0.0317165860483832,0.118771124297205,0,0.0634331720967665,-0.0980353512377064,-0.0325081585551233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.118771124297205,0,0,-0.119707326934104,-0.473688480927036,0,0,0.0634331720967665,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.0634331720967665,0.0634331720967665,0,0,0,0,0,0.118771124297205,0,0,-0.128407750988359,0.0911021481969858,0.4578171706418,0.0243330144408939,0.105969042245772,0,0.215289614176901,0,0,0,0,0.0634331720967665,0,0.118771124297205,0,0,0.194277574610865,0,-0.0504125515893149,0.083924078482183,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.00261617206397502,-0.00491108898060173,0,0,0,0.0563768378185312,-0.210855107185721,0,-0.0574463116969742,-0.0827201683234173,-0.102840463805602,0.276902555657316,0.0077206753155845,0,0,0,0.212579213133874,-0.261136413902484,0,0,-0.121779851751874,-0.149633032512276,0,0,1.63319109898549,0,0.283637165917681,-0.218096787048327,0,0.153331675318972,0,0,0,0,0,0.167848156964366,0,0,0,0.0317165860483832,0,0.10020392984735,0.0267598697480007,0,0,0.0634331720967665,0.00871426210401127,-0.0656825259799838,0,0,0.260443280550937,0.193457872531957,0.0516797477998985,0.410295531877815,0,0.891450660827932,0.00756250610996154,-0.107296270151438,-0.495085419677633,0.453359060541316,-0.189981719549847,0,-0.0212817286158906,-0.0290301296236078,0.0572991505214255,-0.0881547768460074,-0.0127515988439493,-0.462382586034912,0.144164731535262,0,0,0,-0.131414350729926,0,0,-0.0797324185232306,-0.068388454718123,0.256573362199196,-0.329860163019775,-0.0323605431803552,0.246127536691249,0.284511900312576,-0.135039011333165,-0.033889350363178,-0.0616507133764868,0,1.12276433139108,0,0.00251197109586254,0.1297110619041,-0.155350612447228,0,-0.365206337513775,-0.0683442610773682,0.144302959321328,-0.347876311185881,0.11299247016665,0,0,0.0387807090512202,0,0,0,0.0634331720967665,0,0.428865615166557,-0.129109847076623,0.0191060596852624,0,0.0529627833386715,-0.026972567135014,0.124520448606549,0,0.111288972260291,-0.202170761610805,0,-0.229200632499469,0,-0.175163604148612,-0.191278087897334,-0.101921453400286,-0.17043318415093,1.01532099686511,0.0931049167592166,-0.202996870699546,-0.18256956186646,-0.305429985519492,-0.0350782826279374,-0.0881268324752877,0.0519438565344936,-0.0703436545383349,-0.679498131621524,-0.0396233425553836,0.0421137839854961,0.0127571474901758,-0.255109374814599,0,0.233812317931658,0,0.0100318738613049,-0.0569238722025056,0.305841052639366,-0.4290295078906,0,-0.12474645503763,-0.536169316533167,0,-0.10662275310539,-0.0351568281355256,0.483509879270735,-0.0315959590374341,0.0828020940271058,-0.211650427864589,-0.013008646058791,0.0127484503886017,-0.156350721882153,0.251961621240807,0.167848156964366,0.309333759821913,0.174906258189154,0.0634331720967665,-0.0827014689786205,-0.00844200430094133,0.115627181859131,0.0518770835294318,0.118771124297205,0,0.521088932460891,0,0.833710490465684,-0.0226400641536449,0.0634331720967665,0.252250723811867,0.100422124940214,0.0840725845964848,-0.108622809454255,0,0.0634331720967665,-0.00967960900080986,0,-0.0374054465645018,0,0,-0.249881296598824,0,0,0.144302959321328,0,0,0,0,0,0,0.105969042245772,0,0,-0.0844486949293601,0.42566473032324,0.833710490465684,-0.179358576202917,0,0.118771124297205,0,0,0,-0.0659729431195782,0,0,-0.301020139340965,0.00313160659137844,0.230731050750549,0.0317165860483832,0,0,0,0.0362382186873326,0.0087015223968201,0.0634331720967665,-0.0684295344008652,0.288605918642656,0.0317165860483832,0,0.0634331720967665,0.202464928853444,0,0,0,0,0.110117699910702,-0.0371813703093336,0,0,0.0317165860483832,-0.0650163171102466,0,0,0,0,0.12418390151855,0,0,-0.2657760372511,0,-0.294782751567095,0.582788968649633,0.0322247038157701,-0.067929370479982,-0.121166473549054,-0.419622336120286,0,0,-0.261347131789888,0,0.0317165860483832,-0.357027102525342,0,0,-0.0209247759461169,0,0,0,0,0.211938084491544,0,0.648451003063672,0,0,0,0,0,0,0,0.211938084491544,0,0,0,-0.394519327591439,0.0265470676386948,0,0,0,0,0,0,0,-0.0241060230789031,0.0689448855664095,0,0,0,0,0,0,0,0,0.0936565885716595,0,0,0.0634331720967665,0,0,0.313389934710938,0,0.0634331720967665,0,0,0.000275407081017698,0,0,-0.158591007896309,0,0,0,0,0,0,0,0.0141643912572395,0,0,0.0130913049645326,0,0,0.0886189984560961,-0.450330700756596,0,0.0634331720967665,0,0,0,0.0634331720967665,0,-0.0228716769652832,0,0.0634331720967665,0,0,-0.0504512016122107,0,0,0,0.400587396261623,0,-0.0968848579896196,0,0,0,0,0,0,0.191493944529533,0.0593855621486025,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.426704170147302,0,-0.0352458947321025,-0.156077725279886,0,0,-0.0411344081035083,0,0,0,0,0,0,0.000376162019856178,0.0139341654057344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0634331720967665,0.118771124297205,0,0,0,0,0,0,-0.0019823653363122,0,0,0,0,0,0,0,0.285029992791009,0,0,0.13991704306565,0,0,0,0,0.0634331720967665,0,0.267518642301978,-0.199296321340964,0.0405213341501684,1.37950181276728,0,0,0.181874222879633,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0.118771124297205,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0145251466159382,0,0,0,0,0,0,0,0,0,0,0,0.0317165860483832,0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167848156964366,0.125980810620404,0,0,0,0,0,0,0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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 79: | ||
|rna_tube_id=108F4 | |rna_tube_id=108F4 | ||
|rna_weight_ug=36.46871 | |rna_weight_ug=36.46871 | ||
|rnaseq_library_id=RDhi10075 | |||
|sample_age=18 | |sample_age=18 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0803 | |sample_cell_catalog=RCB0803 | ||
|sample_cell_line=NBsusSR | |sample_cell_line=NBsusSR | ||
| Line 69: | Line 94: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.64652470249797e-276!GO:0043231;intracellular membrane-bound organelle;2.01701815333129e-252!GO:0043227;membrane-bound organelle;2.01701815333129e-252!GO:0043226;organelle;2.11976362268194e-243!GO:0043229;intracellular organelle;1.02676555325288e-242!GO:0044422;organelle part;2.05308836788846e-173!GO:0044446;intracellular organelle part;1.17497274845851e-171!GO:0005737;cytoplasm;4.346161344948e-161!GO:0044444;cytoplasmic part;5.87728404820058e-128!GO:0005634;nucleus;9.17332782276741e-119!GO:0032991;macromolecular complex;8.18615119124971e-114!GO:0044238;primary metabolic process;9.41380316456109e-108!GO:0044237;cellular metabolic process;6.49733647298971e-107!GO:0030529;ribonucleoprotein complex;1.99829821932191e-104!GO:0043170;macromolecule metabolic process;5.4627916376762e-103!GO:0043233;organelle lumen;1.01169732614201e-93!GO:0031974;membrane-enclosed lumen;1.01169732614201e-93!GO:0044428;nuclear part;1.76853707519908e-90!GO:0003723;RNA binding;2.08075167598021e-86!GO:0005739;mitochondrion;5.01385873303872e-74!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.38005449740615e-69!GO:0010467;gene expression;7.03818804266696e-68!GO:0043283;biopolymer metabolic process;8.50845633735981e-66!GO:0006396;RNA processing;3.75773715557258e-65!GO:0005840;ribosome;1.91299771001819e-60!GO:0031981;nuclear lumen;1.23528851986829e-56!GO:0043234;protein complex;3.48196681153775e-55!GO:0031090;organelle membrane;1.59699007504427e-53!GO:0005515;protein binding;6.75682855041689e-53!GO:0044429;mitochondrial part;1.80630125413545e-52!GO:0006412;translation;3.81622062783138e-51!GO:0003676;nucleic acid binding;6.07911025656364e-51!GO:0003735;structural constituent of ribosome;4.24673162244196e-50!GO:0016043;cellular component organization and biogenesis;2.53937469414208e-49!GO:0016071;mRNA metabolic process;1.13003335862235e-48!GO:0008380;RNA splicing;8.81384240343825e-45!GO:0031967;organelle envelope;9.28656728895347e-45!GO:0033279;ribosomal subunit;1.10760911309322e-44!GO:0031975;envelope;2.37361007555452e-44!GO:0033036;macromolecule localization;3.5289479176851e-44!GO:0015031;protein transport;7.61256796636618e-43!GO:0009058;biosynthetic process;8.91431992540992e-42!GO:0006397;mRNA processing;4.0673797905778e-41!GO:0006996;organelle organization and biogenesis;4.71206920355274e-41!GO:0044249;cellular biosynthetic process;1.20728185780313e-40!GO:0006259;DNA metabolic process;4.48696789416887e-40!GO:0019538;protein metabolic process;6.90291344367333e-40!GO:0008104;protein localization;1.13060728634699e-39!GO:0016070;RNA metabolic process;2.43162658180784e-39!GO:0045184;establishment of protein localization;6.59206463883581e-39!GO:0009059;macromolecule biosynthetic process;4.08875735255586e-38!GO:0065003;macromolecular complex assembly;2.16830832941469e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.5409876502622e-37!GO:0046907;intracellular transport;2.65908277046499e-36!GO:0044260;cellular macromolecule metabolic process;3.40683813950808e-35!GO:0043228;non-membrane-bound organelle;3.97069056892825e-35!GO:0043232;intracellular non-membrane-bound organelle;3.97069056892825e-35!GO:0005654;nucleoplasm;4.54242671417895e-35!GO:0044267;cellular protein metabolic process;6.20224488760601e-35!GO:0005829;cytosol;1.24890978004254e-33!GO:0022607;cellular component assembly;3.30352590578922e-32!GO:0005740;mitochondrial envelope;9.2200454880972e-32!GO:0005681;spliceosome;1.78806507756305e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.04435731859907e-30!GO:0031966;mitochondrial membrane;3.2116759776986e-30!GO:0019866;organelle inner membrane;3.21306798365429e-30!GO:0044451;nucleoplasm part;4.33763239298461e-29!GO:0005743;mitochondrial inner membrane;9.18498554532829e-28!GO:0006886;intracellular protein transport;1.26804991342832e-27!GO:0000166;nucleotide binding;2.52332234807704e-25!GO:0031980;mitochondrial lumen;7.23418430108238e-25!GO:0005759;mitochondrial matrix;7.23418430108238e-25!GO:0007049;cell cycle;7.53993368749964e-25!GO:0051649;establishment of cellular localization;1.18197035507016e-24!GO:0051641;cellular localization;4.53800174846939e-24!GO:0006119;oxidative phosphorylation;6.03715268367019e-24!GO:0015935;small ribosomal subunit;9.05188458227395e-24!GO:0044445;cytosolic part;3.72490798339097e-23!GO:0005694;chromosome;6.86473477090727e-23!GO:0051276;chromosome organization and biogenesis;1.42517393985943e-22!GO:0006457;protein folding;2.28638041959739e-22!GO:0015934;large ribosomal subunit;4.286898301704e-22!GO:0016462;pyrophosphatase activity;8.18727870061281e-22!GO:0044455;mitochondrial membrane part;8.27358248384393e-22!GO:0005730;nucleolus;9.99038718051369e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.16177750513268e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.47653828352226e-21!GO:0012505;endomembrane system;4.64143898972544e-21!GO:0017111;nucleoside-triphosphatase activity;6.3913929845673e-21!GO:0044427;chromosomal part;1.09474152046179e-20!GO:0006325;establishment and/or maintenance of chromatin architecture;3.6388372529333e-20!GO:0022618;protein-RNA complex assembly;1.49925659872603e-19!GO:0006974;response to DNA damage stimulus;1.52312858586149e-19!GO:0006323;DNA packaging;2.18267647655491e-19!GO:0016874;ligase activity;1.39226349615708e-18!GO:0022402;cell cycle process;1.77706412825652e-18!GO:0008135;translation factor activity, nucleic acid binding;1.84133145234179e-18!GO:0042254;ribosome biogenesis and assembly;2.78499793273493e-18!GO:0005761;mitochondrial ribosome;2.89311901400549e-18!GO:0000313;organellar ribosome;2.89311901400549e-18!GO:0006281;DNA repair;3.61115335283475e-18!GO:0006512;ubiquitin cycle;3.92435573199797e-18!GO:0000278;mitotic cell cycle;8.84919843977902e-18!GO:0005746;mitochondrial respiratory chain;2.63889827724061e-17!GO:0044432;endoplasmic reticulum part;8.40258411469684e-17!GO:0005783;endoplasmic reticulum;1.14621841604969e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.68749057229435e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.51207105368517e-16!GO:0003954;NADH dehydrogenase activity;2.51207105368517e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.51207105368517e-16!GO:0008134;transcription factor binding;2.80572600364852e-16!GO:0006511;ubiquitin-dependent protein catabolic process;6.41814939755965e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;6.86986655128615e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.17450019630585e-16!GO:0019941;modification-dependent protein catabolic process;9.61881963284472e-16!GO:0043632;modification-dependent macromolecule catabolic process;9.61881963284472e-16!GO:0044265;cellular macromolecule catabolic process;1.08003171685544e-15!GO:0032553;ribonucleotide binding;1.15238796956876e-15!GO:0032555;purine ribonucleotide binding;1.15238796956876e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.48749215784353e-15!GO:0000375;RNA splicing, via transesterification reactions;1.48749215784353e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.48749215784353e-15!GO:0044257;cellular protein catabolic process;2.22715921882817e-15!GO:0017076;purine nucleotide binding;2.24182914832511e-15!GO:0016887;ATPase activity;2.59714877347076e-15!GO:0051186;cofactor metabolic process;5.57036077368773e-15!GO:0031965;nuclear membrane;5.73572839988129e-15!GO:0051082;unfolded protein binding;5.94557936995509e-15!GO:0042623;ATPase activity, coupled;7.73469271744124e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.06554999048922e-14!GO:0042773;ATP synthesis coupled electron transport;1.06554999048922e-14!GO:0006399;tRNA metabolic process;1.26030461694351e-14!GO:0006605;protein targeting;1.29668705074946e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.41397732464314e-14!GO:0043285;biopolymer catabolic process;1.80932551754781e-14!GO:0000087;M phase of mitotic cell cycle;1.90214092618637e-14!GO:0006333;chromatin assembly or disassembly;2.13702473075574e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.62230430809588e-14!GO:0045271;respiratory chain complex I;2.62230430809588e-14!GO:0005747;mitochondrial respiratory chain complex I;2.62230430809588e-14!GO:0044453;nuclear membrane part;2.89379515508804e-14!GO:0003743;translation initiation factor activity;3.51831962609512e-14!GO:0051301;cell division;3.60408722242834e-14!GO:0007067;mitosis;4.04594018993374e-14!GO:0048770;pigment granule;4.63572875124038e-14!GO:0042470;melanosome;4.63572875124038e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.8871653519636e-14!GO:0005524;ATP binding;6.91023190925051e-14!GO:0009719;response to endogenous stimulus;7.06618980968817e-14!GO:0005635;nuclear envelope;7.69347287956283e-14!GO:0006260;DNA replication;8.18136431017749e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.8969150990959e-14!GO:0065004;protein-DNA complex assembly;9.68050279091775e-14!GO:0032559;adenyl ribonucleotide binding;1.14059376805596e-13!GO:0022403;cell cycle phase;1.50604698222373e-13!GO:0005794;Golgi apparatus;3.19746962437081e-13!GO:0030554;adenyl nucleotide binding;3.25083546189438e-13!GO:0015630;microtubule cytoskeleton;4.1537594062821e-13!GO:0048193;Golgi vesicle transport;5.11149468153564e-13!GO:0009057;macromolecule catabolic process;8.02665631658546e-13!GO:0016604;nuclear body;2.09744147686056e-12!GO:0044248;cellular catabolic process;2.27057963382367e-12!GO:0005643;nuclear pore;2.5562822290516e-12!GO:0006364;rRNA processing;2.59840498273646e-12!GO:0000785;chromatin;2.78172000563408e-12!GO:0006413;translational initiation;2.92783164587233e-12!GO:0004386;helicase activity;4.56247945141306e-12!GO:0006732;coenzyme metabolic process;5.22748594258431e-12!GO:0030163;protein catabolic process;5.59926099543333e-12!GO:0051169;nuclear transport;7.83325704382262e-12!GO:0016072;rRNA metabolic process;8.2076250764787e-12!GO:0016568;chromatin modification;1.03888386175474e-11!GO:0006913;nucleocytoplasmic transport;1.04635399165938e-11!GO:0009259;ribonucleotide metabolic process;1.27915622877514e-11!GO:0008565;protein transporter activity;1.48332429984854e-11!GO:0016607;nuclear speck;1.49247119297084e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.69481956718032e-11!GO:0050657;nucleic acid transport;2.34629865411918e-11!GO:0051236;establishment of RNA localization;2.34629865411918e-11!GO:0050658;RNA transport;2.34629865411918e-11!GO:0008026;ATP-dependent helicase activity;2.34629865411918e-11!GO:0006163;purine nucleotide metabolic process;2.75840968601283e-11!GO:0000279;M phase;3.19021270821357e-11!GO:0005789;endoplasmic reticulum membrane;3.45748902493068e-11!GO:0006403;RNA localization;4.06336863863588e-11!GO:0009150;purine ribonucleotide metabolic process;5.47089196355784e-11!GO:0006366;transcription from RNA polymerase II promoter;5.56143260549034e-11!GO:0003712;transcription cofactor activity;6.16254913164466e-11!GO:0006334;nucleosome assembly;7.1127470123521e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.58326497450413e-11!GO:0006164;purine nucleotide biosynthetic process;1.17877043819097e-10!GO:0031497;chromatin assembly;1.35458205563871e-10!GO:0016192;vesicle-mediated transport;1.38066732081287e-10!GO:0065002;intracellular protein transport across a membrane;1.47118570460282e-10!GO:0009260;ribonucleotide biosynthetic process;1.48824433308571e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.94472672595453e-10!GO:0009152;purine ribonucleotide biosynthetic process;2.21588420914671e-10!GO:0006446;regulation of translational initiation;2.23994327013882e-10!GO:0019222;regulation of metabolic process;2.47493610728437e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.92791279092129e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.11240814365526e-10!GO:0004812;aminoacyl-tRNA ligase activity;3.11240814365526e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.11240814365526e-10!GO:0046930;pore complex;3.15634642177994e-10!GO:0000074;regulation of progression through cell cycle;3.43564222977495e-10!GO:0043412;biopolymer modification;3.91280169761624e-10!GO:0051726;regulation of cell cycle;4.02762137951123e-10!GO:0043038;amino acid activation;1.15925827622794e-09!GO:0006418;tRNA aminoacylation for protein translation;1.15925827622794e-09!GO:0043039;tRNA aminoacylation;1.15925827622794e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.36851872126243e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.38670844316976e-09!GO:0051028;mRNA transport;2.39690665756721e-09!GO:0030532;small nuclear ribonucleoprotein complex;2.68864712604475e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.52463830502512e-09!GO:0009141;nucleoside triphosphate metabolic process;3.58431021290739e-09!GO:0006350;transcription;3.85154562550857e-09!GO:0006461;protein complex assembly;4.73016850216107e-09!GO:0017038;protein import;4.81034113326291e-09!GO:0005793;ER-Golgi intermediate compartment;5.59349138091555e-09!GO:0009142;nucleoside triphosphate biosynthetic process;5.90055311896991e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.90055311896991e-09!GO:0009060;aerobic respiration;6.27223284659855e-09!GO:0009055;electron carrier activity;7.13398136525369e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.26857425681418e-09!GO:0009144;purine nucleoside triphosphate metabolic process;9.26857425681418e-09!GO:0005667;transcription factor complex;1.096238359022e-08!GO:0015986;ATP synthesis coupled proton transport;1.17952858596149e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.17952858596149e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.62397101676631e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.62397101676631e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.69909651343858e-08!GO:0043566;structure-specific DNA binding;1.892689443755e-08!GO:0006464;protein modification process;1.95434639284481e-08!GO:0045333;cellular respiration;2.08646152073131e-08!GO:0051188;cofactor biosynthetic process;2.78539918592954e-08!GO:0050794;regulation of cellular process;2.82998593289196e-08!GO:0005788;endoplasmic reticulum lumen;4.0999721753235e-08!GO:0000775;chromosome, pericentric region;5.17543687066136e-08!GO:0016779;nucleotidyltransferase activity;6.28143153398765e-08!GO:0031323;regulation of cellular metabolic process;7.13685130641426e-08!GO:0005813;centrosome;7.88357949124578e-08!GO:0007005;mitochondrion organization and biogenesis;9.80265673928682e-08!GO:0016853;isomerase activity;1.03294211409784e-07!GO:0005819;spindle;1.16172186986681e-07!GO:0005815;microtubule organizing center;1.31037327018356e-07!GO:0046034;ATP metabolic process;1.42884483252896e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.48120860897891e-07!GO:0043687;post-translational protein modification;1.61375194386522e-07!GO:0019829;cation-transporting ATPase activity;1.77999798723427e-07!GO:0006752;group transfer coenzyme metabolic process;1.80973784313905e-07!GO:0032774;RNA biosynthetic process;1.87732483734567e-07!GO:0003677;DNA binding;2.01124787698528e-07!GO:0003697;single-stranded DNA binding;2.0417118571738e-07!GO:0006754;ATP biosynthetic process;2.09551065493338e-07!GO:0006753;nucleoside phosphate metabolic process;2.09551065493338e-07!GO:0006351;transcription, DNA-dependent;2.50899479812872e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.65705294206189e-07!GO:0008639;small protein conjugating enzyme activity;3.44070974117022e-07!GO:0019787;small conjugating protein ligase activity;3.58810260268783e-07!GO:0009117;nucleotide metabolic process;3.7117690802638e-07!GO:0009109;coenzyme catabolic process;4.8185887484303e-07!GO:0006099;tricarboxylic acid cycle;5.41130628972199e-07!GO:0046356;acetyl-CoA catabolic process;5.41130628972199e-07!GO:0004842;ubiquitin-protein ligase activity;5.44781318537776e-07!GO:0000245;spliceosome assembly;5.54344556643625e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.7205171481258e-07!GO:0045259;proton-transporting ATP synthase complex;5.83439200034289e-07!GO:0010468;regulation of gene expression;5.87779933840679e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.15200102175288e-07!GO:0006084;acetyl-CoA metabolic process;7.87400361597272e-07!GO:0005657;replication fork;9.48976103225357e-07!GO:0006261;DNA-dependent DNA replication;9.48976103225357e-07!GO:0005768;endosome;9.67028873695713e-07!GO:0003899;DNA-directed RNA polymerase activity;1.06951966293008e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.22172994581351e-06!GO:0051187;cofactor catabolic process;1.27128765982671e-06!GO:0044431;Golgi apparatus part;1.27708206308259e-06!GO:0051329;interphase of mitotic cell cycle;1.39296655508524e-06!GO:0043623;cellular protein complex assembly;1.48935450548033e-06!GO:0005762;mitochondrial large ribosomal subunit;1.53071323444451e-06!GO:0000315;organellar large ribosomal subunit;1.53071323444451e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.6159730456207e-06!GO:0009056;catabolic process;1.66876319168628e-06!GO:0016881;acid-amino acid ligase activity;1.90170119810343e-06!GO:0008033;tRNA processing;2.60331894638658e-06!GO:0000314;organellar small ribosomal subunit;3.08920634229175e-06!GO:0005763;mitochondrial small ribosomal subunit;3.08920634229175e-06!GO:0016740;transferase activity;3.22641543046958e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.70999786745713e-06!GO:0009108;coenzyme biosynthetic process;3.8075909734776e-06!GO:0006613;cotranslational protein targeting to membrane;4.44658132398087e-06!GO:0008094;DNA-dependent ATPase activity;5.01936763152544e-06!GO:0016859;cis-trans isomerase activity;5.83884404041633e-06!GO:0051168;nuclear export;6.33124364704703e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.36031168388595e-06!GO:0005874;microtubule;6.8321101407967e-06!GO:0032446;protein modification by small protein conjugation;7.10843547689711e-06!GO:0008654;phospholipid biosynthetic process;7.27820172280279e-06!GO:0000151;ubiquitin ligase complex;7.51266212145548e-06!GO:0045449;regulation of transcription;7.87481493824211e-06!GO:0048475;coated membrane;8.17850912325712e-06!GO:0030117;membrane coat;8.17850912325712e-06!GO:0016564;transcription repressor activity;8.49844423282131e-06!GO:0007051;spindle organization and biogenesis;8.65417354699349e-06!GO:0003724;RNA helicase activity;9.22439577193004e-06!GO:0000786;nucleosome;1.10871634117637e-05!GO:0044440;endosomal part;1.10953685194424e-05!GO:0010008;endosome membrane;1.10953685194424e-05!GO:0031324;negative regulation of cellular metabolic process;1.12100294115415e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.2243695635856e-05!GO:0045786;negative regulation of progression through cell cycle;1.30551796270003e-05!GO:0003682;chromatin binding;1.38033298256422e-05!GO:0016363;nuclear matrix;1.3832985649838e-05!GO:0051325;interphase;1.5216615072018e-05!GO:0016567;protein ubiquitination;1.65515564801134e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.66323198818191e-05!GO:0051170;nuclear import;1.91193715535414e-05!GO:0003714;transcription corepressor activity;1.91193715535414e-05!GO:0008168;methyltransferase activity;2.14809510522243e-05!GO:0015631;tubulin binding;2.28396468679119e-05!GO:0006606;protein import into nucleus;2.39282229005754e-05!GO:0007017;microtubule-based process;2.66995457894563e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.93582480862723e-05!GO:0031988;membrane-bound vesicle;3.10840003880321e-05!GO:0006355;regulation of transcription, DNA-dependent;3.10840003880321e-05!GO:0000139;Golgi membrane;3.36509401838499e-05!GO:0005769;early endosome;3.5679170903098e-05!GO:0030120;vesicle coat;3.59437767216557e-05!GO:0030662;coated vesicle membrane;3.59437767216557e-05!GO:0006626;protein targeting to mitochondrion;3.8131479998378e-05!GO:0044452;nucleolar part;3.99653304497009e-05!GO:0009892;negative regulation of metabolic process;4.43541226265836e-05!GO:0016481;negative regulation of transcription;4.77263874297153e-05!GO:0005770;late endosome;5.19206261440378e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.22219122114494e-05!GO:0043021;ribonucleoprotein binding;5.85390072686947e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.39361976053995e-05!GO:0043681;protein import into mitochondrion;6.72199657053278e-05!GO:0006839;mitochondrial transport;7.10109407700676e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.88162798348031e-05!GO:0030880;RNA polymerase complex;9.52444410078171e-05!GO:0005798;Golgi-associated vesicle;0.000104145702684007!GO:0051246;regulation of protein metabolic process;0.000108146516158203!GO:0006612;protein targeting to membrane;0.000116826926318857!GO:0000776;kinetochore;0.000117262544872065!GO:0051427;hormone receptor binding;0.000120327459673006!GO:0003713;transcription coactivator activity;0.000121973050437815!GO:0005839;proteasome core complex (sensu Eukaryota);0.00012512643643865!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00012751746555689!GO:0006383;transcription from RNA polymerase III promoter;0.000131319108474854!GO:0046474;glycerophospholipid biosynthetic process;0.000131613036044294!GO:0050789;regulation of biological process;0.00015142060100131!GO:0009165;nucleotide biosynthetic process;0.00015490199050474!GO:0000075;cell cycle checkpoint;0.000160744866787792!GO:0003924;GTPase activity;0.000168059105290503!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000172369323013718!GO:0031982;vesicle;0.000192069798758047!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000233775446291193!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000240961408840211!GO:0000428;DNA-directed RNA polymerase complex;0.000240961408840211!GO:0035257;nuclear hormone receptor binding;0.000257595275032834!GO:0046489;phosphoinositide biosynthetic process;0.000263924840991931!GO:0012501;programmed cell death;0.000268158299786238!GO:0031968;organelle outer membrane;0.000280640007352889!GO:0006338;chromatin remodeling;0.000301210093767753!GO:0006405;RNA export from nucleus;0.000314765428915695!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000316732932748583!GO:0015399;primary active transmembrane transporter activity;0.000316732932748583!GO:0004298;threonine endopeptidase activity;0.000331709045323049!GO:0003678;DNA helicase activity;0.000331994939290641!GO:0031072;heat shock protein binding;0.000343595541253253!GO:0000049;tRNA binding;0.000347601551138604!GO:0031410;cytoplasmic vesicle;0.000368021183270007!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000369440710197998!GO:0016787;hydrolase activity;0.000377532168874249!GO:0008250;oligosaccharyl transferase complex;0.000400237651017659!GO:0006915;apoptosis;0.00042215927365347!GO:0045454;cell redox homeostasis;0.00042257743262247!GO:0005741;mitochondrial outer membrane;0.000440541586367097!GO:0006302;double-strand break repair;0.000454220418195099!GO:0008186;RNA-dependent ATPase activity;0.000454682071133848!GO:0006352;transcription initiation;0.000462017088614515!GO:0003690;double-stranded DNA binding;0.000476036768878277!GO:0004576;oligosaccharyl transferase activity;0.000519991961897211!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00056191125926258!GO:0006402;mRNA catabolic process;0.000581572849932429!GO:0003729;mRNA binding;0.000582950454312581!GO:0019867;outer membrane;0.000587211700769378!GO:0005684;U2-dependent spliceosome;0.000589232984561273!GO:0048523;negative regulation of cellular process;0.000596552787671226!GO:0006091;generation of precursor metabolites and energy;0.000605620889778933!GO:0003684;damaged DNA binding;0.00065587514236372!GO:0046467;membrane lipid biosynthetic process;0.000659884297461069!GO:0007006;mitochondrial membrane organization and biogenesis;0.000700248593801546!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000725611091815786!GO:0019843;rRNA binding;0.000738094223333924!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000750763090893349!GO:0016251;general RNA polymerase II transcription factor activity;0.000789540636082257!GO:0051920;peroxiredoxin activity;0.000790971171575834!GO:0016310;phosphorylation;0.000795095311834951!GO:0005048;signal sequence binding;0.000801530322892006!GO:0005525;GTP binding;0.000807468321348195!GO:0051539;4 iron, 4 sulfur cluster binding;0.000844728410550045!GO:0000059;protein import into nucleus, docking;0.000913198622073325!GO:0033116;ER-Golgi intermediate compartment membrane;0.000914497300254565!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000949563387865918!GO:0048500;signal recognition particle;0.0011316604550617!GO:0019899;enzyme binding;0.0011316604550617!GO:0048471;perinuclear region of cytoplasm;0.00114565703765598!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00115774158635077!GO:0016563;transcription activator activity;0.00116714267834775!GO:0051087;chaperone binding;0.00116714267834775!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00123574495370923!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00123574495370923!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00123574495370923!GO:0045892;negative regulation of transcription, DNA-dependent;0.00124073893018234!GO:0008219;cell death;0.00124073893018234!GO:0016265;death;0.00124073893018234!GO:0004004;ATP-dependent RNA helicase activity;0.0012911387855623!GO:0006401;RNA catabolic process;0.00132066628123952!GO:0006793;phosphorus metabolic process;0.0013216888837269!GO:0006796;phosphate metabolic process;0.0013216888837269!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00138979191485021!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00138979191485021!GO:0030867;rough endoplasmic reticulum membrane;0.00153724920295251!GO:0016272;prefoldin complex;0.00160860896156926!GO:0005637;nuclear inner membrane;0.00161184938926609!GO:0032508;DNA duplex unwinding;0.00168899049630686!GO:0032392;DNA geometric change;0.00168899049630686!GO:0006414;translational elongation;0.001796770253293!GO:0005876;spindle microtubule;0.00182348090414567!GO:0004527;exonuclease activity;0.00186700681517939!GO:0006506;GPI anchor biosynthetic process;0.00192246052720241!GO:0046483;heterocycle metabolic process;0.00197101381386991!GO:0051540;metal cluster binding;0.002010634276946!GO:0051536;iron-sulfur cluster binding;0.002010634276946!GO:0006891;intra-Golgi vesicle-mediated transport;0.00206599099733724!GO:0008312;7S RNA binding;0.00209316436280166!GO:0018196;peptidyl-asparagine modification;0.00210866372452028!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00210866372452028!GO:0006310;DNA recombination;0.00214685698068937!GO:0008610;lipid biosynthetic process;0.00221790127776003!GO:0003702;RNA polymerase II transcription factor activity;0.002269845386956!GO:0006505;GPI anchor metabolic process;0.00228539734866044!GO:0051287;NAD binding;0.00234533702528344!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00238896771880794!GO:0030663;COPI coated vesicle membrane;0.0025706157376151!GO:0030126;COPI vesicle coat;0.0025706157376151!GO:0003711;transcription elongation regulator activity;0.00258234797133778!GO:0006818;hydrogen transport;0.00264530445213659!GO:0003746;translation elongation factor activity;0.00277135009057378!GO:0051789;response to protein stimulus;0.00282655340257969!GO:0006986;response to unfolded protein;0.00282655340257969!GO:0016491;oxidoreductase activity;0.00283618198028211!GO:0000082;G1/S transition of mitotic cell cycle;0.00283618198028211!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00284079988196291!GO:0045047;protein targeting to ER;0.00284079988196291!GO:0008017;microtubule binding;0.00284079988196291!GO:0007059;chromosome segregation;0.00296318656397935!GO:0015992;proton transport;0.00321521416323216!GO:0043596;nuclear replication fork;0.00321521416323216!GO:0019783;small conjugating protein-specific protease activity;0.00327880518596684!GO:0004518;nuclease activity;0.00338750667443993!GO:0000178;exosome (RNase complex);0.00344953647510978!GO:0048487;beta-tubulin binding;0.00355376310875494!GO:0007052;mitotic spindle organization and biogenesis;0.00361754045860124!GO:0043492;ATPase activity, coupled to movement of substances;0.00367409988876173!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00375378593742702!GO:0009451;RNA modification;0.00382483057219147!GO:0007010;cytoskeleton organization and biogenesis;0.00389988799629213!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00405177628694196!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0041276739512583!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00422261956594652!GO:0016126;sterol biosynthetic process;0.00429733177054037!GO:0004843;ubiquitin-specific protease activity;0.0043951196650479!GO:0030176;integral to endoplasmic reticulum membrane;0.00444550313433462!GO:0045045;secretory pathway;0.00449457173258708!GO:0006268;DNA unwinding during replication;0.00450419528369903!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00453954100958676!GO:0007088;regulation of mitosis;0.0046081752942242!GO:0030137;COPI-coated vesicle;0.00464272925444833!GO:0008180;signalosome;0.0047720547377037!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0049183603930831!GO:0006595;polyamine metabolic process;0.0049183603930831!GO:0030133;transport vesicle;0.0049183603930831!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00496762274080614!GO:0032561;guanyl ribonucleotide binding;0.00506307967889638!GO:0019001;guanyl nucleotide binding;0.00506307967889638!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00509066387543278!GO:0019752;carboxylic acid metabolic process;0.00538087992533309!GO:0006082;organic acid metabolic process;0.00547310807022068!GO:0007093;mitotic cell cycle checkpoint;0.00549236460395982!GO:0030384;phosphoinositide metabolic process;0.00551097798920428!GO:0008097;5S rRNA binding;0.00554890910373813!GO:0005885;Arp2/3 protein complex;0.00564296605003!GO:0006497;protein amino acid lipidation;0.0058224395914977!GO:0016584;nucleosome positioning;0.00601915255800119!GO:0000922;spindle pole;0.00607689282605141!GO:0005905;coated pit;0.00614361560568159!GO:0004221;ubiquitin thiolesterase activity;0.00621335087591083!GO:0005875;microtubule associated complex;0.00656839029616512!GO:0048519;negative regulation of biological process;0.00692416507686303!GO:0006650;glycerophospholipid metabolic process;0.00694731363108164!GO:0000792;heterochromatin;0.00695630483592887!GO:0016790;thiolester hydrolase activity;0.00754714826864686!GO:0006611;protein export from nucleus;0.00758525657570493!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0075904511328946!GO:0015002;heme-copper terminal oxidase activity;0.0075904511328946!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0075904511328946!GO:0004129;cytochrome-c oxidase activity;0.0075904511328946!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00768301406122516!GO:0044262;cellular carbohydrate metabolic process;0.00775315253320695!GO:0042802;identical protein binding;0.00816508040519655!GO:0006695;cholesterol biosynthetic process;0.00821423852129788!GO:0050662;coenzyme binding;0.00823269676778611!GO:0042158;lipoprotein biosynthetic process;0.00836651838604868!GO:0032259;methylation;0.00860053583708577!GO:0043284;biopolymer biosynthetic process;0.00863999734523108!GO:0005669;transcription factor TFIID complex;0.00869258500377773!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00887470020754617!GO:0003756;protein disulfide isomerase activity;0.00887470020754617!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00887470020754617!GO:0031902;late endosome membrane;0.0090791571501146!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00923947996466641!GO:0005832;chaperonin-containing T-complex;0.00928943756768237!GO:0005791;rough endoplasmic reticulum;0.0092996869703089!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00934851871070466!GO:0032981;mitochondrial respiratory chain complex I assembly;0.00960767267689174!GO:0010257;NADH dehydrogenase complex assembly;0.00960767267689174!GO:0033108;mitochondrial respiratory chain complex assembly;0.00960767267689174!GO:0006779;porphyrin biosynthetic process;0.00975005628853044!GO:0033014;tetrapyrrole biosynthetic process;0.00975005628853044!GO:0030041;actin filament polymerization;0.00988056990061246!GO:0043022;ribosome binding;0.0101493555083495!GO:0007050;cell cycle arrest;0.0102827848058105!GO:0005758;mitochondrial intermembrane space;0.0102999595636961!GO:0006284;base-excision repair;0.0103964534121801!GO:0031970;organelle envelope lumen;0.0105113021095392!GO:0046966;thyroid hormone receptor binding;0.0105321053941449!GO:0008022;protein C-terminus binding;0.0105763532068665!GO:0008139;nuclear localization sequence binding;0.0106811443932875!GO:0031124;mRNA 3'-end processing;0.0110979474671161!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0111221172936897!GO:0000118;histone deacetylase complex;0.0112327309558577!GO:0030118;clathrin coat;0.0112443013396939!GO:0006376;mRNA splice site selection;0.0116048857998128!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0116048857998128!GO:0007021;tubulin folding;0.0122287421404671!GO:0006289;nucleotide-excision repair;0.0123084809427899!GO:0000339;RNA cap binding;0.0124577632935345!GO:0006778;porphyrin metabolic process;0.0124821994856831!GO:0033013;tetrapyrrole metabolic process;0.0124821994856831!GO:0016407;acetyltransferase activity;0.0124821994856831!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0124821994856831!GO:0016197;endosome transport;0.0126825359638559!GO:0005844;polysome;0.0127860074771093!GO:0031252;leading edge;0.0129496786410216!GO:0009112;nucleobase metabolic process;0.0130281276719729!GO:0043601;nuclear replisome;0.0131531383315126!GO:0030894;replisome;0.0131531383315126!GO:0009116;nucleoside metabolic process;0.0133085791368334!GO:0044450;microtubule organizing center part;0.0134685328324428!GO:0000152;nuclear ubiquitin ligase complex;0.0136798398310179!GO:0006378;mRNA polyadenylation;0.0139213602632863!GO:0051052;regulation of DNA metabolic process;0.0140117847382326!GO:0051252;regulation of RNA metabolic process;0.0141095896269878!GO:0005680;anaphase-promoting complex;0.014557221739347!GO:0006144;purine base metabolic process;0.0146491255379508!GO:0000725;recombinational repair;0.01466582440019!GO:0000724;double-strand break repair via homologous recombination;0.01466582440019!GO:0016585;chromatin remodeling complex;0.0150670058415239!GO:0006406;mRNA export from nucleus;0.0154183650301375!GO:0006520;amino acid metabolic process;0.0156534150874976!GO:0004532;exoribonuclease activity;0.0156534150874976!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0156534150874976!GO:0006984;ER-nuclear signaling pathway;0.0156767546636115!GO:0008276;protein methyltransferase activity;0.0156831552645008!GO:0043189;H4/H2A histone acetyltransferase complex;0.0171100863659866!GO:0006220;pyrimidine nucleotide metabolic process;0.0173659164044708!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0173659164044708!GO:0006400;tRNA modification;0.0173659164044708!GO:0004003;ATP-dependent DNA helicase activity;0.0177207071074735!GO:0005869;dynactin complex;0.018363251562169!GO:0000096;sulfur amino acid metabolic process;0.0183788547265733!GO:0032200;telomere organization and biogenesis;0.0188500821943983!GO:0000723;telomere maintenance;0.0188500821943983!GO:0035267;NuA4 histone acetyltransferase complex;0.0202103812792197!GO:0016860;intramolecular oxidoreductase activity;0.0202368238736699!GO:0000910;cytokinesis;0.0203105637381292!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0204540858932781!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0206480150275604!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0208509926507327!GO:0017134;fibroblast growth factor binding;0.0212312483984517!GO:0005773;vacuole;0.0219533104920885!GO:0005663;DNA replication factor C complex;0.0219696035353488!GO:0006916;anti-apoptosis;0.0220449967471771!GO:0004448;isocitrate dehydrogenase activity;0.0222703731549804!GO:0008652;amino acid biosynthetic process;0.0225606758083!GO:0042393;histone binding;0.0230670097426203!GO:0022890;inorganic cation transmembrane transporter activity;0.0231602312088749!GO:0030134;ER to Golgi transport vesicle;0.0232114029374446!GO:0000228;nuclear chromosome;0.0233810089627549!GO:0033559;unsaturated fatty acid metabolic process;0.0235116958931426!GO:0006636;unsaturated fatty acid biosynthetic process;0.0235116958931426!GO:0044438;microbody part;0.0235982181300161!GO:0044439;peroxisomal part;0.0235982181300161!GO:0040029;regulation of gene expression, epigenetic;0.0242209136831717!GO:0031901;early endosome membrane;0.0242466084637022!GO:0000123;histone acetyltransferase complex;0.0243582388519452!GO:0016417;S-acyltransferase activity;0.0249249937579392!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0256380078853782!GO:0005754;mitochondrial proton-transporting ATP synthase, catalytic core;0.025787824940004!GO:0000275;mitochondrial proton-transporting ATP synthase complex, catalytic core F(1);0.025787824940004!GO:0045267;proton-transporting ATP synthase, catalytic core;0.025787824940004!GO:0043488;regulation of mRNA stability;0.0261794701834816!GO:0043487;regulation of RNA stability;0.0261794701834816!GO:0009124;nucleoside monophosphate biosynthetic process;0.0262760709455591!GO:0009123;nucleoside monophosphate metabolic process;0.0262760709455591!GO:0042809;vitamin D receptor binding;0.0262760709455591!GO:0006541;glutamine metabolic process;0.0262760709455591!GO:0008408;3'-5' exonuclease activity;0.0270169777375486!GO:0043414;biopolymer methylation;0.0270169777375486!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0270861839525347!GO:0045039;protein import into mitochondrial inner membrane;0.0270861839525347!GO:0005854;nascent polypeptide-associated complex;0.0294149289624403!GO:0005784;translocon complex;0.0294657065917743!GO:0003923;GPI-anchor transamidase activity;0.0294657065917743!GO:0016255;attachment of GPI anchor to protein;0.0294657065917743!GO:0042765;GPI-anchor transamidase complex;0.0294657065917743!GO:0000781;chromosome, telomeric region;0.0298765047486917!GO:0031371;ubiquitin conjugating enzyme complex;0.0298993954297936!GO:0030521;androgen receptor signaling pathway;0.0316849564270482!GO:0046128;purine ribonucleoside metabolic process;0.0318187613037807!GO:0042278;purine nucleoside metabolic process;0.0318187613037807!GO:0042987;amyloid precursor protein catabolic process;0.0322646306250478!GO:0042769;DNA damage response, detection of DNA damage;0.0327511388071375!GO:0030496;midbody;0.0327511388071375!GO:0006740;NADPH regeneration;0.03293648820536!GO:0006098;pentose-phosphate shunt;0.03293648820536!GO:0031625;ubiquitin protein ligase binding;0.0331913696743379!GO:0008173;RNA methyltransferase activity;0.0331913696743379!GO:0030433;ER-associated protein catabolic process;0.0334248905215462!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0334248905215462!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0334248905215462!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0334248905215462!GO:0009126;purine nucleoside monophosphate metabolic process;0.0334248905215462!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0334248905215462!GO:0009119;ribonucleoside metabolic process;0.0336024638196503!GO:0009081;branched chain family amino acid metabolic process;0.034939233872454!GO:0051656;establishment of organelle localization;0.034986881623355!GO:0031903;microbody membrane;0.0353339928305322!GO:0005778;peroxisomal membrane;0.0353339928305322!GO:0000097;sulfur amino acid biosynthetic process;0.0360478118284283!GO:0043624;cellular protein complex disassembly;0.0360478118284283!GO:0042147;retrograde transport, endosome to Golgi;0.0365951979713124!GO:0000726;non-recombinational repair;0.036825685060006!GO:0004722;protein serine/threonine phosphatase activity;0.0369155797561685!GO:0022884;macromolecule transmembrane transporter activity;0.0372756255182179!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0372756255182179!GO:0048037;cofactor binding;0.0373133685796058!GO:0031123;RNA 3'-end processing;0.0373456484700282!GO:0044454;nuclear chromosome part;0.0379825362710161!GO:0009161;ribonucleoside monophosphate metabolic process;0.0383177227259225!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0383177227259225!GO:0006509;membrane protein ectodomain proteolysis;0.0383177227259225!GO:0033619;membrane protein proteolysis;0.0383177227259225!GO:0007034;vacuolar transport;0.0394503967137161!GO:0008320;protein transmembrane transporter activity;0.0396438080950668!GO:0030658;transport vesicle membrane;0.039975610551401!GO:0030508;thiol-disulfide exchange intermediate activity;0.0402285001862753!GO:0005938;cell cortex;0.0402886479526726!GO:0043069;negative regulation of programmed cell death;0.040372872079759!GO:0000819;sister chromatid segregation;0.0404876914566246!GO:0006730;one-carbon compound metabolic process;0.0409257692450623!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0412067592566121!GO:0030027;lamellipodium;0.0418502521461929!GO:0030119;AP-type membrane coat adaptor complex;0.0423021990478065!GO:0008154;actin polymerization and/or depolymerization;0.0425478633040849!GO:0006783;heme biosynthetic process;0.0426109111146123!GO:0008538;proteasome activator activity;0.0434224362892732!GO:0030145;manganese ion binding;0.0435617964984395!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0435675965735941!GO:0000030;mannosyltransferase activity;0.0442506629848266!GO:0000805;X chromosome;0.0442506629848266!GO:0001740;Barr body;0.0442506629848266!GO:0006516;glycoprotein catabolic process;0.0443177794710034!GO:0030132;clathrin coat of coated pit;0.0443903884933597!GO:0033130;acetylcholine receptor binding;0.0443903884933597!GO:0007040;lysosome organization and biogenesis;0.0450470970779371!GO:0009303;rRNA transcription;0.0453789760018636!GO:0016579;protein deubiquitination;0.0461272802837276!GO:0004185;serine carboxypeptidase activity;0.0464071007312211!GO:0016615;malate dehydrogenase activity;0.0465230154312244!GO:0043066;negative regulation of apoptosis;0.0465230154312244!GO:0000790;nuclear chromatin;0.0474038174503148!GO:0030127;COPII vesicle coat;0.0486752893867166!GO:0012507;ER to Golgi transport vesicle membrane;0.0486752893867166!GO:0007004;telomere maintenance via telomerase;0.0487152830846695!GO:0030833;regulation of actin filament polymerization;0.0488429807125235!GO:0042168;heme metabolic process;0.0488429807125235!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0491375675623831!GO:0006013;mannose metabolic process;0.0496117981166841 | |||
|sample_id=10607 | |sample_id=10607 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 102: | ||
|sample_tissue=pelvis | |sample_tissue=pelvis | ||
|top_motifs=OCT4_SOX2{dimer}:2.33008041419;ALX1:2.20510623167;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.90035837554;POU2F1..3:1.66226084053;ELK1,4_GABP{A,B1}:1.6449738584;NFY{A,B,C}:1.64045553469;PRRX1,2:1.54325001863;ZNF143:1.52463266069;POU1F1:1.49788560998;GFI1:1.45940136037;SOX{8,9,10}:1.4363577142;NRF1:1.31520537672;IKZF2:1.17373118552;RFX1:1.16713404889;EN1,2:1.08435934611;bHLH_family:1.07356353491;CUX2:1.07018936081;BREu{core}:1.05969550685;DBP:1.05752037209;NANOG:1.0521449568;HOX{A4,D4}:1.04772355616;PAX8:1.03164577081;PBX1:1.03158907883;YY1:0.984053562515;CRX:0.957177604577;NKX2-1,4:0.926309423111;PAX4:0.921172202638;LHX3,4:0.903405912101;CDX1,2,4:0.877159674746;STAT5{A,B}:0.853057309109;FOXP1:0.823709873719;HOXA9_MEIS1:0.811303962005;PAX3,7:0.810565497409;E2F1..5:0.796126779207;AIRE:0.771627170907;SOX17:0.765078866441;RORA:0.736891859027;T:0.70454121136;RXR{A,B,G}:0.668404006316;PITX1..3:0.659015588742;FOXD3:0.586834446352;ATF4:0.586099609636;ZBTB16:0.580661364592;MYB:0.572852956471;RBPJ:0.565386216044;PRDM1:0.531273524993;POU6F1:0.518026745242;FOXA2:0.509652176158;ARID5B:0.509483757856;ATF5_CREB3:0.482977325637;HOX{A5,B5}:0.479403908867;NKX3-2:0.466711377704;EVI1:0.463714311357;POU3F1..4:0.457395345299;ZNF384:0.440605558366;UFEwm:0.434090639179;PAX5:0.42284478211;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.412248996961;ZBTB6:0.410774148701;GATA4:0.393128063981;AHR_ARNT_ARNT2:0.322394581711;GTF2A1,2:0.313587397324;ESRRA:0.258460292554;EGR1..3:0.255111772708;ZFP161:0.243483011135;SOX2:0.227245760635;NKX6-1,2:0.202613526437;HBP1_HMGB_SSRP1_UBTF:0.198915708707;FOXL1:0.197712316285;SREBF1,2:0.192970649231;PAX1,9:0.192064805347;POU5F1:0.17964912804;PATZ1:0.166120495791;TOPORS:0.163527326648;RFX2..5_RFXANK_RFXAP:0.153357679701;AR:0.147634893255;GATA6:0.144076423431;MEF2{A,B,C,D}:0.134218243682;ONECUT1,2:0.133419442087;TEF:0.126862586607;STAT1,3:0.122363315825;NKX3-1:0.112097884167;HOX{A6,A7,B6,B7}:0.102366705846;TFDP1:0.0977192431519;REST:0.091815077026;CDC5L:0.0845731890609;NKX2-3_NKX2-5:0.0674928020764;ADNP_IRX_SIX_ZHX:0.0588584317406;CREB1:0.0556571033268;MED-1{core}:0.038123997549;KLF4:0.0131082178503;XBP1:-0.000806835025873;FOXN1:-0.00423617154784;MZF1:-0.012084990897;MTE{core}:-0.0269641312236;ZIC1..3:-0.0295451288404;LEF1_TCF7_TCF7L1,2:-0.0311282212937;GFI1B:-0.0385241976058;LMO2:-0.0666495796472;TFAP2B:-0.0684463169525;GTF2I:-0.0844191385934;TLX1..3_NFIC{dimer}:-0.0910962599278;NFIL3:-0.0972008765483;ATF2:-0.0974481665216;MYBL2:-0.116476676668;FOXP3:-0.116684376499;MYFfamily:-0.145096307051;SP1:-0.159053974001;HLF:-0.159684938868;BPTF:-0.19259388509;HNF4A_NR2F1,2:-0.221147115809;SOX5:-0.227649345658;CEBPA,B_DDIT3:-0.23678879615;NR6A1:-0.246291845896;FOXM1:-0.259708508393;HNF1A:-0.274813509407;ATF6:-0.292636030479;NKX2-2,8:-0.29848720533;PAX2:-0.302661835357;RREB1:-0.343739591177;NHLH1,2:-0.351439056431;HMGA1,2:-0.358345766274;SNAI1..3:-0.363221757404;SPIB:-0.36372974201;ZEB1:-0.376821146885;TBP:-0.386138061735;TBX4,5:-0.399870125834;ALX4:-0.404367504782;PAX6:-0.417891211052;HIC1:-0.430912973017;NFKB1_REL_RELA:-0.435343085891;TEAD1:-0.4427512635;ELF1,2,4:-0.45289716968;HMX1:-0.4601132663;TAL1_TCF{3,4,12}:-0.460678942688;DMAP1_NCOR{1,2}_SMARC:-0.523377483979;EBF1:-0.531526054067;NFIX:-0.536562008037;MYOD1:-0.54066427742;HIF1A:-0.542610488926;NFE2:-0.556334029168;JUN:-0.59101050098;RUNX1..3:-0.632412677851;FOSL2:-0.636948239047;NFE2L2:-0.637458939809;SPI1:-0.638885797008;VSX1,2:-0.65880005609;GZF1:-0.669713876067;MAZ:-0.725197195129;FOS_FOS{B,L1}_JUN{B,D}:-0.731539316191;BACH2:-0.736315404091;FOXO1,3,4:-0.744968274807;NR5A1,2:-0.745111442364;NR1H4:-0.749516039886;FOX{F1,F2,J1}:-0.761867358979;GLI1..3:-0.769390101042;TLX2:-0.780527667484;PPARG:-0.78502270333;MAFB:-0.796305206713;FOX{D1,D2}:-0.802366087124;NANOG{mouse}:-0.80534869428;MTF1:-0.805930667427;SPZ1:-0.819901188776;TP53:-0.863684168836;ESR1:-0.864411141126;ZNF238:-0.871841578367;FOXQ1:-0.908325859522;IRF1,2:-0.911813005896;HAND1,2:-0.933962728879;SMAD1..7,9:-0.946116382802;IRF7:-0.952799070615;ETS1,2:-0.967656084839;TGIF1:-0.98880460603;TFAP2{A,C}:-1.08360066423;HSF1,2:-1.08475113249;NFE2L1:-1.10186832465;IKZF1:-1.1279489217;HES1:-1.15184732709;ZNF423:-1.16120143208;STAT2,4,6:-1.17874460378;TFAP4:-1.19411142673;FOX{I1,J2}:-1.21265514801;NR3C1:-1.21435008007;NFATC1..3:-1.22134563323;EP300:-1.22160962882;GCM1,2:-1.29795280163;PDX1:-1.3241267564;ZNF148:-1.33006800593;SRF:-1.4493087773;XCPE1{core}:-1.5473034256;RXRA_VDR{dimer}:-1.61287415147;TFCP2:-1.67732342227 | |top_motifs=OCT4_SOX2{dimer}:2.33008041419;ALX1:2.20510623167;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.90035837554;POU2F1..3:1.66226084053;ELK1,4_GABP{A,B1}:1.6449738584;NFY{A,B,C}:1.64045553469;PRRX1,2:1.54325001863;ZNF143:1.52463266069;POU1F1:1.49788560998;GFI1:1.45940136037;SOX{8,9,10}:1.4363577142;NRF1:1.31520537672;IKZF2:1.17373118552;RFX1:1.16713404889;EN1,2:1.08435934611;bHLH_family:1.07356353491;CUX2:1.07018936081;BREu{core}:1.05969550685;DBP:1.05752037209;NANOG:1.0521449568;HOX{A4,D4}:1.04772355616;PAX8:1.03164577081;PBX1:1.03158907883;YY1:0.984053562515;CRX:0.957177604577;NKX2-1,4:0.926309423111;PAX4:0.921172202638;LHX3,4:0.903405912101;CDX1,2,4:0.877159674746;STAT5{A,B}:0.853057309109;FOXP1:0.823709873719;HOXA9_MEIS1:0.811303962005;PAX3,7:0.810565497409;E2F1..5:0.796126779207;AIRE:0.771627170907;SOX17:0.765078866441;RORA:0.736891859027;T:0.70454121136;RXR{A,B,G}:0.668404006316;PITX1..3:0.659015588742;FOXD3:0.586834446352;ATF4:0.586099609636;ZBTB16:0.580661364592;MYB:0.572852956471;RBPJ:0.565386216044;PRDM1:0.531273524993;POU6F1:0.518026745242;FOXA2:0.509652176158;ARID5B:0.509483757856;ATF5_CREB3:0.482977325637;HOX{A5,B5}:0.479403908867;NKX3-2:0.466711377704;EVI1:0.463714311357;POU3F1..4:0.457395345299;ZNF384:0.440605558366;UFEwm:0.434090639179;PAX5:0.42284478211;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.412248996961;ZBTB6:0.410774148701;GATA4:0.393128063981;AHR_ARNT_ARNT2:0.322394581711;GTF2A1,2:0.313587397324;ESRRA:0.258460292554;EGR1..3:0.255111772708;ZFP161:0.243483011135;SOX2:0.227245760635;NKX6-1,2:0.202613526437;HBP1_HMGB_SSRP1_UBTF:0.198915708707;FOXL1:0.197712316285;SREBF1,2:0.192970649231;PAX1,9:0.192064805347;POU5F1:0.17964912804;PATZ1:0.166120495791;TOPORS:0.163527326648;RFX2..5_RFXANK_RFXAP:0.153357679701;AR:0.147634893255;GATA6:0.144076423431;MEF2{A,B,C,D}:0.134218243682;ONECUT1,2:0.133419442087;TEF:0.126862586607;STAT1,3:0.122363315825;NKX3-1:0.112097884167;HOX{A6,A7,B6,B7}:0.102366705846;TFDP1:0.0977192431519;REST:0.091815077026;CDC5L:0.0845731890609;NKX2-3_NKX2-5:0.0674928020764;ADNP_IRX_SIX_ZHX:0.0588584317406;CREB1:0.0556571033268;MED-1{core}:0.038123997549;KLF4:0.0131082178503;XBP1:-0.000806835025873;FOXN1:-0.00423617154784;MZF1:-0.012084990897;MTE{core}:-0.0269641312236;ZIC1..3:-0.0295451288404;LEF1_TCF7_TCF7L1,2:-0.0311282212937;GFI1B:-0.0385241976058;LMO2:-0.0666495796472;TFAP2B:-0.0684463169525;GTF2I:-0.0844191385934;TLX1..3_NFIC{dimer}:-0.0910962599278;NFIL3:-0.0972008765483;ATF2:-0.0974481665216;MYBL2:-0.116476676668;FOXP3:-0.116684376499;MYFfamily:-0.145096307051;SP1:-0.159053974001;HLF:-0.159684938868;BPTF:-0.19259388509;HNF4A_NR2F1,2:-0.221147115809;SOX5:-0.227649345658;CEBPA,B_DDIT3:-0.23678879615;NR6A1:-0.246291845896;FOXM1:-0.259708508393;HNF1A:-0.274813509407;ATF6:-0.292636030479;NKX2-2,8:-0.29848720533;PAX2:-0.302661835357;RREB1:-0.343739591177;NHLH1,2:-0.351439056431;HMGA1,2:-0.358345766274;SNAI1..3:-0.363221757404;SPIB:-0.36372974201;ZEB1:-0.376821146885;TBP:-0.386138061735;TBX4,5:-0.399870125834;ALX4:-0.404367504782;PAX6:-0.417891211052;HIC1:-0.430912973017;NFKB1_REL_RELA:-0.435343085891;TEAD1:-0.4427512635;ELF1,2,4:-0.45289716968;HMX1:-0.4601132663;TAL1_TCF{3,4,12}:-0.460678942688;DMAP1_NCOR{1,2}_SMARC:-0.523377483979;EBF1:-0.531526054067;NFIX:-0.536562008037;MYOD1:-0.54066427742;HIF1A:-0.542610488926;NFE2:-0.556334029168;JUN:-0.59101050098;RUNX1..3:-0.632412677851;FOSL2:-0.636948239047;NFE2L2:-0.637458939809;SPI1:-0.638885797008;VSX1,2:-0.65880005609;GZF1:-0.669713876067;MAZ:-0.725197195129;FOS_FOS{B,L1}_JUN{B,D}:-0.731539316191;BACH2:-0.736315404091;FOXO1,3,4:-0.744968274807;NR5A1,2:-0.745111442364;NR1H4:-0.749516039886;FOX{F1,F2,J1}:-0.761867358979;GLI1..3:-0.769390101042;TLX2:-0.780527667484;PPARG:-0.78502270333;MAFB:-0.796305206713;FOX{D1,D2}:-0.802366087124;NANOG{mouse}:-0.80534869428;MTF1:-0.805930667427;SPZ1:-0.819901188776;TP53:-0.863684168836;ESR1:-0.864411141126;ZNF238:-0.871841578367;FOXQ1:-0.908325859522;IRF1,2:-0.911813005896;HAND1,2:-0.933962728879;SMAD1..7,9:-0.946116382802;IRF7:-0.952799070615;ETS1,2:-0.967656084839;TGIF1:-0.98880460603;TFAP2{A,C}:-1.08360066423;HSF1,2:-1.08475113249;NFE2L1:-1.10186832465;IKZF1:-1.1279489217;HES1:-1.15184732709;ZNF423:-1.16120143208;STAT2,4,6:-1.17874460378;TFAP4:-1.19411142673;FOX{I1,J2}:-1.21265514801;NR3C1:-1.21435008007;NFATC1..3:-1.22134563323;EP300:-1.22160962882;GCM1,2:-1.29795280163;PDX1:-1.3241267564;ZNF148:-1.33006800593;SRF:-1.4493087773;XCPE1{core}:-1.5473034256;RXRA_VDR{dimer}:-1.61287415147;TFCP2:-1.67732342227 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10607-108F4;search_select_hide=table117:FF:10607-108F4 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | neuroblastoma cell line:NBsusSR |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11818 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11818
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11818
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.463 |
| 10 | 10 | 0.413 |
| 100 | 100 | 0.489 |
| 101 | 101 | 0.938 |
| 102 | 102 | 0.807 |
| 103 | 103 | 0.225 |
| 104 | 104 | 0.717 |
| 105 | 105 | 0.0769 |
| 106 | 106 | 2.87645e-4 |
| 107 | 107 | 0.00963 |
| 108 | 108 | 0.543 |
| 109 | 109 | 0.117 |
| 11 | 11 | 0.308 |
| 110 | 110 | 0.527 |
| 111 | 111 | 0.331 |
| 112 | 112 | 0.416 |
| 113 | 113 | 0.226 |
| 114 | 114 | 0.00276 |
| 115 | 115 | 0.639 |
| 116 | 116 | 0.95 |
| 117 | 117 | 0.691 |
| 118 | 118 | 0.897 |
| 119 | 119 | 0.216 |
| 12 | 12 | 0.318 |
| 120 | 120 | 0.236 |
| 121 | 121 | 0.331 |
| 122 | 122 | 0.205 |
| 123 | 123 | 0.802 |
| 124 | 124 | 0.986 |
| 125 | 125 | 0.671 |
| 126 | 126 | 0.412 |
| 127 | 127 | 0.379 |
| 128 | 128 | 0.051 |
| 129 | 129 | 0.945 |
| 13 | 13 | 0.846 |
| 130 | 130 | 0.365 |
| 131 | 131 | 0.16 |
| 132 | 132 | 0.794 |
| 133 | 133 | 0.911 |
| 134 | 134 | 0.694 |
| 135 | 135 | 0.787 |
| 136 | 136 | 0.772 |
| 137 | 137 | 0.132 |
| 138 | 138 | 0.799 |
| 139 | 139 | 0.221 |
| 14 | 14 | 0.718 |
| 140 | 140 | 0.276 |
| 141 | 141 | 0.58 |
| 142 | 142 | 0.553 |
| 143 | 143 | 0.00361 |
| 144 | 144 | 0.796 |
| 145 | 145 | 0.29 |
| 146 | 146 | 0.787 |
| 147 | 147 | 0.935 |
| 148 | 148 | 0.0761 |
| 149 | 149 | 0.0566 |
| 15 | 15 | 0.331 |
| 150 | 150 | 0.441 |
| 151 | 151 | 0.166 |
| 152 | 152 | 0.00783 |
| 153 | 153 | 0.334 |
| 154 | 154 | 0.896 |
| 155 | 155 | 0.659 |
| 156 | 156 | 0.449 |
| 157 | 157 | 0.81 |
| 158 | 158 | 0.231 |
| 159 | 159 | 0.412 |
| 16 | 16 | 0.242 |
| 160 | 160 | 0.223 |
| 161 | 161 | 0.426 |
| 162 | 162 | 0.828 |
| 163 | 163 | 0.341 |
| 164 | 164 | 0.763 |
| 165 | 165 | 0.625 |
| 166 | 166 | 0.76 |
| 167 | 167 | 0.587 |
| 168 | 168 | 0.18 |
| 169 | 169 | 0.00677 |
| 17 | 17 | 0.11 |
| 18 | 18 | 0.702 |
| 19 | 19 | 0.0848 |
| 2 | 2 | 0.101 |
| 20 | 20 | 0.437 |
| 21 | 21 | 0.375 |
| 22 | 22 | 0.0747 |
| 23 | 23 | 0.00791 |
| 24 | 24 | 0.327 |
| 25 | 25 | 0.641 |
| 26 | 26 | 0.223 |
| 27 | 27 | 0.144 |
| 28 | 28 | 0.94 |
| 29 | 29 | 0.832 |
| 3 | 3 | 0.422 |
| 30 | 30 | 0.284 |
| 31 | 31 | 0.513 |
| 32 | 32 | 0.0175 |
| 33 | 33 | 0.776 |
| 34 | 34 | 0.257 |
| 35 | 35 | 0.744 |
| 36 | 36 | 0.241 |
| 37 | 37 | 0.275 |
| 38 | 38 | 0.292 |
| 39 | 39 | 0.359 |
| 4 | 4 | 0.769 |
| 40 | 40 | 0.67 |
| 41 | 41 | 0.126 |
| 42 | 42 | 0.84 |
| 43 | 43 | 0.176 |
| 44 | 44 | 0.345 |
| 45 | 45 | 0.407 |
| 46 | 46 | 0.321 |
| 47 | 47 | 0.579 |
| 48 | 48 | 0.592 |
| 49 | 49 | 0.348 |
| 5 | 5 | 0.346 |
| 50 | 50 | 0.648 |
| 51 | 51 | 0.377 |
| 52 | 52 | 0.154 |
| 53 | 53 | 0.511 |
| 54 | 54 | 0.103 |
| 55 | 55 | 0.517 |
| 56 | 56 | 0.386 |
| 57 | 57 | 0.99 |
| 58 | 58 | 0.21 |
| 59 | 59 | 0.0218 |
| 6 | 6 | 0.528 |
| 60 | 60 | 0.0601 |
| 61 | 61 | 0.204 |
| 62 | 62 | 0.0586 |
| 63 | 63 | 0.33 |
| 64 | 64 | 0.941 |
| 65 | 65 | 0.096 |
| 66 | 66 | 0.373 |
| 67 | 67 | 0.241 |
| 68 | 68 | 0.167 |
| 69 | 69 | 0.357 |
| 7 | 7 | 0.854 |
| 70 | 70 | 0.00627 |
| 71 | 71 | 0.138 |
| 72 | 72 | 0.449 |
| 73 | 73 | 0.0418 |
| 74 | 74 | 0.275 |
| 75 | 75 | 0.61 |
| 76 | 76 | 0.715 |
| 77 | 77 | 0.0622 |
| 78 | 78 | 0.158 |
| 79 | 79 | 0.173 |
| 8 | 8 | 0.45 |
| 80 | 80 | 0.0851 |
| 81 | 81 | 0.569 |
| 82 | 82 | 0.0933 |
| 83 | 83 | 0.272 |
| 84 | 84 | 0.596 |
| 85 | 85 | 0.00466 |
| 86 | 86 | 0.843 |
| 87 | 87 | 0.704 |
| 88 | 88 | 0.566 |
| 89 | 89 | 0.0914 |
| 9 | 9 | 0.0987 |
| 90 | 90 | 0.899 |
| 91 | 91 | 0.418 |
| 92 | 92 | 0.0701 |
| 93 | 93 | 0.375 |
| 94 | 94 | 0.381 |
| 95 | 95 | 0.393 |
| 96 | 96 | 0.212 |
| 97 | 97 | 0.582 |
| 98 | 98 | 0.254 |
| 99 | 99 | 0.771 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11818
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100932 neuroblastoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000333 (migratory neural crest cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000219 (motile cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
169 (neuroendocrine tumor)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000013 (sympathetic nervous system)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0002410 (autonomic nervous system)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100932 (neuroblastoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
