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{{f5samples
{{f5samples
|id=FF:10591-108D6
|DRA_sample_Accession=CAGE@SAMD00004817
|name=testicular germ cell embryonal carcinoma cell line:NEC14, biol_rep1
|accession_numbers=CAGE;DRX008023;DRR008895;DRZ000320;DRZ001705;DRZ011670;DRZ013055
|sample_id=10591
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
|rna_tube_id=108D6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:0000039,CL:0000586
|rna_box=108
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994
|rna_position=D6
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
|sample_cell_lot=
|comment=
|sample_cell_catalog=RCB0490
|created_by=
|sample_company=RIKEN Bioresource centre
|creation_date=
|rna_lot_number=
|data_phase=2
|rna_catalog_number=
|datafreeze_phase=2
|sample_species=Human (Homo sapiens)
|def=
|sample_strain=
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|sample_dev_stage=
|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316
|sample_tissue=testis
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=26
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=2.16000
|rna_od260/280=2.10000
|sample_cell_type=unclassifiable
|sample_cell_line=NEC14
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=testicular germ cell embryonal carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=139.50075
|rna_concentration=1.86001
|sample_note=
|profile_hcage=CNhs12351,LSID913,release011,SEQUENCING QUEUE
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000039,CL:0000063,CL:0000066,CL:0000144,CL:0000255,CL:0000548,CL:0000586
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000079,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000473,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000990,UBERON:0000991,UBERON:0001048,UBERON:0001062,UBERON:0002050,UBERON:0002323,UBERON:0002532,UBERON:0002553,UBERON:0003101,UBERON:0003133,UBERON:0003135,UBERON:0004120,UBERON:0004176,UBERON:0004458,UBERON:0005156,UBERON:0005423,UBERON:0005564,UBERON:0009117,UBERON:0009196
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:2994,DOID:305,DOID:3095,DOID:4
|sample_description=
 
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC14.CNhs12351.10591-108D6.hg38.nobarcode.ctss.bed.gz
|id=FF:10591-108D6
|is_a=CL:0000586;;DOID:3095;;EFO:0002091;;FF:0000210;;FF:0100297;;UBERON:0000473;;UBERON:0000922
|is_obsolete=
|library_id=CNhs12351
|library_id_phase_based=2:CNhs12351
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10591
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10591
|name=testicular germ cell embryonal carcinoma cell line:NEC14
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12351,LSID913,release011,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=108
|rna_catalog_number=
|rna_concentration=1.86001
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.16
|rna_od260/280=2.1
|rna_position=D6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108D6
|rna_weight_ug=139.50075
|sample_age=26
|sample_category=cell lines
|sample_cell_catalog=RCB0490
|sample_cell_line=NEC14
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=testicular germ cell embryonal carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.55850181161717e-294!GO:0043226;organelle;3.30132516794039e-257!GO:0043229;intracellular organelle;1.24252372726603e-256!GO:0043231;intracellular membrane-bound organelle;8.99880698656073e-254!GO:0043227;membrane-bound organelle;1.22699162004598e-253!GO:0044422;organelle part;5.7206824752137e-154!GO:0044446;intracellular organelle part;8.16792118695969e-153!GO:0005737;cytoplasm;8.49816359301056e-152!GO:0005634;nucleus;2.07535328869103e-148!GO:0044237;cellular metabolic process;1.08205966249788e-115!GO:0043170;macromolecule metabolic process;3.99623650163261e-115!GO:0044238;primary metabolic process;1.34598537384202e-113!GO:0032991;macromolecular complex;3.34231909232971e-103!GO:0030529;ribonucleoprotein complex;1.78651535134344e-101!GO:0044444;cytoplasmic part;1.1787322704872e-100!GO:0003723;RNA binding;9.18407106564198e-97!GO:0044428;nuclear part;8.19551159262667e-96!GO:0010467;gene expression;3.63116623180856e-87!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.14406010956648e-85!GO:0043283;biopolymer metabolic process;5.02789086167641e-83!GO:0043233;organelle lumen;5.86771719221352e-81!GO:0031974;membrane-enclosed lumen;5.86771719221352e-81!GO:0003676;nucleic acid binding;8.62995717246517e-71!GO:0006396;RNA processing;2.61867609223657e-64!GO:0005515;protein binding;6.24870474468728e-63!GO:0005739;mitochondrion;2.81312661269882e-60!GO:0006412;translation;2.77060534276802e-57!GO:0005840;ribosome;7.18829938888984e-56!GO:0031981;nuclear lumen;1.74442418086435e-55!GO:0016043;cellular component organization and biogenesis;3.95027357497941e-55!GO:0016070;RNA metabolic process;8.8588301925425e-53!GO:0016071;mRNA metabolic process;1.81536516284449e-50!GO:0003735;structural constituent of ribosome;2.88594251140861e-48!GO:0043234;protein complex;3.74822531963449e-48!GO:0043228;non-membrane-bound organelle;4.40396324240205e-47!GO:0043232;intracellular non-membrane-bound organelle;4.40396324240205e-47!GO:0008380;RNA splicing;5.24023894356077e-47!GO:0006996;organelle organization and biogenesis;5.24524037924004e-44!GO:0033279;ribosomal subunit;5.74221791821715e-43!GO:0033036;macromolecule localization;1.12014971722077e-42!GO:0006259;DNA metabolic process;2.57565321245485e-42!GO:0006397;mRNA processing;1.9087901506029e-41!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.24882207260567e-41!GO:0015031;protein transport;1.3559519876225e-40!GO:0044429;mitochondrial part;1.60620792497137e-40!GO:0044249;cellular biosynthetic process;3.61714778755118e-40!GO:0009059;macromolecule biosynthetic process;3.61898951121061e-39!GO:0019538;protein metabolic process;3.77717816617083e-39!GO:0031967;organelle envelope;3.85329866297519e-38!GO:0031975;envelope;7.49428026336722e-38!GO:0031090;organelle membrane;3.09470187598987e-37!GO:0008104;protein localization;3.87318405447632e-37!GO:0045184;establishment of protein localization;1.0090284373234e-36!GO:0009058;biosynthetic process;1.16182495728177e-36!GO:0065003;macromolecular complex assembly;3.42248552323119e-35!GO:0044267;cellular protein metabolic process;4.99832323182631e-35!GO:0044260;cellular macromolecule metabolic process;8.43898386787341e-35!GO:0046907;intracellular transport;9.03447176218359e-35!GO:0005681;spliceosome;3.3954702998737e-34!GO:0000166;nucleotide binding;7.63576446517599e-34!GO:0022607;cellular component assembly;2.00163551479974e-33!GO:0005654;nucleoplasm;1.80407251924878e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.46384540487202e-32!GO:0005829;cytosol;5.70742248989793e-30!GO:0007049;cell cycle;1.43563246655566e-29!GO:0006886;intracellular protein transport;2.08921421675066e-28!GO:0005694;chromosome;8.21728429160187e-26!GO:0044451;nucleoplasm part;1.03915636096268e-25!GO:0005730;nucleolus;4.84439115687277e-25!GO:0051649;establishment of cellular localization;1.54012912691846e-24!GO:0005740;mitochondrial envelope;3.53751250929766e-24!GO:0019866;organelle inner membrane;6.29529565150584e-24!GO:0051641;cellular localization;8.87278307726479e-24!GO:0044445;cytosolic part;1.06505418069181e-23!GO:0051276;chromosome organization and biogenesis;1.26982019400266e-23!GO:0022618;protein-RNA complex assembly;1.43202583957555e-23!GO:0006974;response to DNA damage stimulus;1.50915795824903e-23!GO:0015935;small ribosomal subunit;4.39300062021958e-23!GO:0022402;cell cycle process;5.20473963276838e-23!GO:0032553;ribonucleotide binding;2.33373820171049e-22!GO:0032555;purine ribonucleotide binding;2.33373820171049e-22!GO:0044427;chromosomal part;2.51072239605903e-22!GO:0000278;mitotic cell cycle;3.18592417254249e-22!GO:0031966;mitochondrial membrane;3.19658992398799e-22!GO:0017076;purine nucleotide binding;1.0216696610178e-21!GO:0005743;mitochondrial inner membrane;2.41665042547589e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;2.85535898785613e-21!GO:0016462;pyrophosphatase activity;3.11014284965618e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.34381694062593e-21!GO:0022403;cell cycle phase;4.93740147706067e-21!GO:0015934;large ribosomal subunit;5.42730742544531e-21!GO:0006119;oxidative phosphorylation;6.16276047640727e-21!GO:0017111;nucleoside-triphosphatase activity;1.85899325317927e-20!GO:0000087;M phase of mitotic cell cycle;1.85899325317927e-20!GO:0008135;translation factor activity, nucleic acid binding;2.80032657338935e-20!GO:0005524;ATP binding;3.25520713712854e-20!GO:0032559;adenyl ribonucleotide binding;6.24759881971212e-20!GO:0007067;mitosis;6.25344155243247e-20!GO:0000279;M phase;1.7804026041949e-19!GO:0031980;mitochondrial lumen;1.80340395363998e-19!GO:0005759;mitochondrial matrix;1.80340395363998e-19!GO:0019222;regulation of metabolic process;2.53334198149146e-19!GO:0044265;cellular macromolecule catabolic process;3.71838661892195e-19!GO:0030554;adenyl nucleotide binding;4.27356441299971e-19!GO:0006281;DNA repair;5.98009263739745e-19!GO:0044455;mitochondrial membrane part;1.09813531416949e-18!GO:0042254;ribosome biogenesis and assembly;3.40516226716614e-18!GO:0016874;ligase activity;3.58206204332573e-18!GO:0051301;cell division;5.45207971858515e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;5.7273068927554e-18!GO:0004386;helicase activity;8.26675917960969e-18!GO:0006512;ubiquitin cycle;1.50493224693073e-17!GO:0006457;protein folding;1.5120392290187e-17!GO:0006323;DNA packaging;3.170359911474e-17!GO:0050794;regulation of cellular process;5.21913136252449e-17!GO:0043285;biopolymer catabolic process;1.01414909151237e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.03654976568719e-16!GO:0000375;RNA splicing, via transesterification reactions;1.03654976568719e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.03654976568719e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.03654976568719e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.17144950792182e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.19956489105492e-16!GO:0031323;regulation of cellular metabolic process;1.64411383537825e-16!GO:0019941;modification-dependent protein catabolic process;1.72120716793114e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.72120716793114e-16!GO:0006260;DNA replication;1.7684291113834e-16!GO:0044257;cellular protein catabolic process;2.62846655330815e-16!GO:0006350;transcription;2.922493061624e-16!GO:0044453;nuclear membrane part;3.55783292114849e-16!GO:0006403;RNA localization;6.18929407924912e-16!GO:0009057;macromolecule catabolic process;6.25488530642899e-16!GO:0031965;nuclear membrane;7.68450404114658e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.34459328621839e-15!GO:0051082;unfolded protein binding;1.78835036808759e-15!GO:0016887;ATPase activity;1.78835036808759e-15!GO:0050657;nucleic acid transport;2.09897385857975e-15!GO:0051236;establishment of RNA localization;2.09897385857975e-15!GO:0050658;RNA transport;2.09897385857975e-15!GO:0005761;mitochondrial ribosome;2.23578353022762e-15!GO:0000313;organellar ribosome;2.23578353022762e-15!GO:0008134;transcription factor binding;2.5620090406334e-15!GO:0009719;response to endogenous stimulus;2.6222374861176e-15!GO:0005643;nuclear pore;3.06343387747512e-15!GO:0003743;translation initiation factor activity;3.57753085732964e-15!GO:0006413;translational initiation;5.22656158549735e-15!GO:0010468;regulation of gene expression;6.4438745715862e-15!GO:0005635;nuclear envelope;6.88790689336319e-15!GO:0048770;pigment granule;1.08720201985866e-14!GO:0042470;melanosome;1.08720201985866e-14!GO:0006605;protein targeting;1.24241947183811e-14!GO:0008026;ATP-dependent helicase activity;1.28432470645956e-14!GO:0042623;ATPase activity, coupled;1.70824586673991e-14!GO:0032774;RNA biosynthetic process;3.31598373356131e-14!GO:0005746;mitochondrial respiratory chain;3.55556054412278e-14!GO:0016604;nuclear body;3.85941076963605e-14!GO:0006351;transcription, DNA-dependent;5.05663662550073e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.34950352048279e-14!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.16085185252587e-13!GO:0006913;nucleocytoplasmic transport;1.66988965124788e-13!GO:0051028;mRNA transport;1.66988965124788e-13!GO:0000502;proteasome complex (sensu Eukaryota);1.76685313418684e-13!GO:0012505;endomembrane system;1.93509039262767e-13!GO:0044248;cellular catabolic process;2.06074443056389e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.66114538134343e-13!GO:0003954;NADH dehydrogenase activity;2.66114538134343e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.66114538134343e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.82793061664755e-13!GO:0030163;protein catabolic process;3.24925799177991e-13!GO:0051169;nuclear transport;5.04919251280474e-13!GO:0006446;regulation of translational initiation;5.59055302005651e-13!GO:0006399;tRNA metabolic process;7.15151596344078e-13!GO:0006364;rRNA processing;1.19138564386716e-12!GO:0065002;intracellular protein transport across a membrane;1.23888818938986e-12!GO:0016607;nuclear speck;1.23904852553631e-12!GO:0003677;DNA binding;2.08355828765102e-12!GO:0016072;rRNA metabolic process;2.35292757333587e-12!GO:0046930;pore complex;3.40324498443222e-12!GO:0050789;regulation of biological process;7.32270937961038e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.1751132813004e-11!GO:0042773;ATP synthesis coupled electron transport;1.1751132813004e-11!GO:0051186;cofactor metabolic process;1.24420161943319e-11!GO:0045449;regulation of transcription;1.30208349627402e-11!GO:0043412;biopolymer modification;1.44873130442778e-11!GO:0015630;microtubule cytoskeleton;1.83776546616272e-11!GO:0000785;chromatin;2.46486021494218e-11!GO:0030964;NADH dehydrogenase complex (quinone);2.60564062836906e-11!GO:0045271;respiratory chain complex I;2.60564062836906e-11!GO:0005747;mitochondrial respiratory chain complex I;2.60564062836906e-11!GO:0016568;chromatin modification;2.74539003891164e-11!GO:0006355;regulation of transcription, DNA-dependent;3.56177027860556e-11!GO:0006366;transcription from RNA polymerase II promoter;3.90615578121774e-11!GO:0065004;protein-DNA complex assembly;5.0576420734721e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.30987210425376e-11!GO:0004812;aminoacyl-tRNA ligase activity;5.30987210425376e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.30987210425376e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.20112195991774e-11!GO:0008565;protein transporter activity;8.92482909018118e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.13577988850269e-10!GO:0043038;amino acid activation;1.6435814382605e-10!GO:0006418;tRNA aminoacylation for protein translation;1.6435814382605e-10!GO:0043039;tRNA aminoacylation;1.6435814382605e-10!GO:0048193;Golgi vesicle transport;2.00990964045401e-10!GO:0006732;coenzyme metabolic process;2.97077014595733e-10!GO:0005794;Golgi apparatus;6.81631902211646e-10!GO:0003712;transcription cofactor activity;8.50446427818794e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.80012916198986e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.90795508870789e-09!GO:0017038;protein import;2.32605983227132e-09!GO:0006464;protein modification process;3.92818203226089e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.04763694287426e-09!GO:0043687;post-translational protein modification;4.06428419898793e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.74231042795131e-09!GO:0006333;chromatin assembly or disassembly;5.61644902636893e-09!GO:0006163;purine nucleotide metabolic process;6.40496726301073e-09!GO:0009259;ribonucleotide metabolic process;6.788177570753e-09!GO:0006164;purine nucleotide biosynthetic process;8.14285584173779e-09!GO:0000775;chromosome, pericentric region;1.27847890193972e-08!GO:0015986;ATP synthesis coupled proton transport;1.31710724190149e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31710724190149e-08!GO:0016779;nucleotidyltransferase activity;1.54297476175789e-08!GO:0009260;ribonucleotide biosynthetic process;2.34470383147695e-08!GO:0000074;regulation of progression through cell cycle;2.5700063257807e-08!GO:0051726;regulation of cell cycle;2.66682115337618e-08!GO:0043566;structure-specific DNA binding;2.68748187251172e-08!GO:0009150;purine ribonucleotide metabolic process;2.76976603582974e-08!GO:0000245;spliceosome assembly;3.15764743062961e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.46285183541825e-08!GO:0006261;DNA-dependent DNA replication;3.8422983524942e-08!GO:0006461;protein complex assembly;3.94302010026189e-08!GO:0005813;centrosome;5.02513577841553e-08!GO:0003697;single-stranded DNA binding;5.95299819992699e-08!GO:0003724;RNA helicase activity;1.00944043414655e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.01503743469832e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.05307583010067e-07!GO:0016192;vesicle-mediated transport;1.23499655003574e-07!GO:0051188;cofactor biosynthetic process;1.71288294275599e-07!GO:0003899;DNA-directed RNA polymerase activity;1.73555381334264e-07!GO:0019829;cation-transporting ATPase activity;1.76456736801193e-07!GO:0005815;microtubule organizing center;1.88194695242773e-07!GO:0008639;small protein conjugating enzyme activity;2.34197754675529e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.51781013577738e-07!GO:0006754;ATP biosynthetic process;2.91444337324971e-07!GO:0006753;nucleoside phosphate metabolic process;2.91444337324971e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.12544273536969e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.12544273536969e-07!GO:0005819;spindle;3.43902592218691e-07!GO:0004842;ubiquitin-protein ligase activity;4.69642812682217e-07!GO:0005793;ER-Golgi intermediate compartment;5.64106615170332e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.3511867304969e-07!GO:0009108;coenzyme biosynthetic process;6.866329210899e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.55065134562752e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.73662201046195e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.73662201046195e-07!GO:0012501;programmed cell death;7.87242343476456e-07!GO:0016740;transferase activity;7.95213872670081e-07!GO:0051170;nuclear import;8.91138931345892e-07!GO:0019787;small conjugating protein ligase activity;9.16598275742642e-07!GO:0051168;nuclear export;1.01327150431193e-06!GO:0009060;aerobic respiration;1.07929716167201e-06!GO:0006915;apoptosis;1.1055501442308e-06!GO:0043623;cellular protein complex assembly;1.20103074085689e-06!GO:0046034;ATP metabolic process;1.21602334543998e-06!GO:0009055;electron carrier activity;1.23897298257699e-06!GO:0005783;endoplasmic reticulum;1.25646192306533e-06!GO:0005667;transcription factor complex;1.34919411547514e-06!GO:0031497;chromatin assembly;1.43235611058029e-06!GO:0009141;nucleoside triphosphate metabolic process;1.51327155665383e-06!GO:0009056;catabolic process;1.54237360119148e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.71521280438181e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.71521280438181e-06!GO:0051246;regulation of protein metabolic process;1.86651291997444e-06!GO:0006334;nucleosome assembly;1.86651291997444e-06!GO:0045259;proton-transporting ATP synthase complex;1.98771996100273e-06!GO:0032446;protein modification by small protein conjugation;2.05726706558378e-06!GO:0008094;DNA-dependent ATPase activity;2.16862677783593e-06!GO:0006752;group transfer coenzyme metabolic process;2.25552465765167e-06!GO:0006606;protein import into nucleus;2.2985798276681e-06!GO:0007059;chromosome segregation;2.35145941041707e-06!GO:0008186;RNA-dependent ATPase activity;2.45252397029758e-06!GO:0045333;cellular respiration;2.56040791159485e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.59490488986591e-06!GO:0008270;zinc ion binding;2.91235470009324e-06!GO:0007051;spindle organization and biogenesis;3.05921121940314e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.49188440968886e-06!GO:0016363;nuclear matrix;5.19400290095457e-06!GO:0065007;biological regulation;5.50525516941519e-06!GO:0044452;nucleolar part;6.17881686048277e-06!GO:0016567;protein ubiquitination;6.8056300412754e-06!GO:0044432;endoplasmic reticulum part;7.23277977149712e-06!GO:0004004;ATP-dependent RNA helicase activity;8.53183888064095e-06!GO:0005657;replication fork;9.61453465260101e-06!GO:0007005;mitochondrion organization and biogenesis;9.83562446930334e-06!GO:0048475;coated membrane;1.00798422154321e-05!GO:0030117;membrane coat;1.00798422154321e-05!GO:0006402;mRNA catabolic process;1.01219070440083e-05!GO:0006099;tricarboxylic acid cycle;1.23188632383072e-05!GO:0046356;acetyl-CoA catabolic process;1.23188632383072e-05!GO:0000314;organellar small ribosomal subunit;1.42112561588593e-05!GO:0005763;mitochondrial small ribosomal subunit;1.42112561588593e-05!GO:0000075;cell cycle checkpoint;1.64965348268215e-05!GO:0006084;acetyl-CoA metabolic process;1.82270434623123e-05!GO:0005874;microtubule;1.82270434623123e-05!GO:0016881;acid-amino acid ligase activity;1.85542137754156e-05!GO:0003690;double-stranded DNA binding;2.01829999068363e-05!GO:0008219;cell death;2.01829999068363e-05!GO:0016265;death;2.01829999068363e-05!GO:0007010;cytoskeleton organization and biogenesis;2.30621808304401e-05!GO:0005768;endosome;2.42465247158727e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.4487067927696e-05!GO:0006401;RNA catabolic process;2.75793222912234e-05!GO:0009117;nucleotide metabolic process;3.05540501960355e-05!GO:0043021;ribonucleoprotein binding;3.23906371549229e-05!GO:0000776;kinetochore;3.36461492116047e-05!GO:0007017;microtubule-based process;3.49079247706954e-05!GO:0005762;mitochondrial large ribosomal subunit;3.85556495792725e-05!GO:0000315;organellar large ribosomal subunit;3.85556495792725e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.97862920065978e-05!GO:0006383;transcription from RNA polymerase III promoter;4.14949189524528e-05!GO:0009109;coenzyme catabolic process;4.34897488121694e-05!GO:0031988;membrane-bound vesicle;4.47019995152297e-05!GO:0003729;mRNA binding;4.57890807399645e-05!GO:0051427;hormone receptor binding;4.65870510058992e-05!GO:0008168;methyltransferase activity;4.79903259723184e-05!GO:0030880;RNA polymerase complex;4.90321232378777e-05!GO:0000151;ubiquitin ligase complex;5.44322977815514e-05!GO:0006302;double-strand break repair;5.86845537503268e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.95071560391811e-05!GO:0051325;interphase;6.03889068279467e-05!GO:0000059;protein import into nucleus, docking;6.26770524127105e-05!GO:0051187;cofactor catabolic process;7.15690110236404e-05!GO:0003678;DNA helicase activity;7.67268344294663e-05!GO:0006613;cotranslational protein targeting to membrane;7.67268344294663e-05!GO:0003713;transcription coactivator activity;7.79888284092628e-05!GO:0006793;phosphorus metabolic process;8.09380868363081e-05!GO:0006796;phosphate metabolic process;8.09380868363081e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;8.23014609589092e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;8.36705129460602e-05!GO:0030120;vesicle coat;8.69339204855332e-05!GO:0030662;coated vesicle membrane;8.69339204855332e-05!GO:0000228;nuclear chromosome;9.9701469407607e-05!GO:0035257;nuclear hormone receptor binding;0.000100809486488353!GO:0006352;transcription initiation;0.000102350730894736!GO:0031982;vesicle;0.000102350730894736!GO:0044440;endosomal part;0.000102586844400482!GO:0010008;endosome membrane;0.000102586844400482!GO:0003682;chromatin binding;0.000103639163201561!GO:0051052;regulation of DNA metabolic process;0.00011029891410356!GO:0051329;interphase of mitotic cell cycle;0.00011041815990443!GO:0015631;tubulin binding;0.000113481903442235!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000114132025184957!GO:0000428;DNA-directed RNA polymerase complex;0.000114132025184957!GO:0016251;general RNA polymerase II transcription factor activity;0.000114891817304539!GO:0031072;heat shock protein binding;0.000115586797597635!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000122899639191226!GO:0005525;GTP binding;0.000131271652179755!GO:0044431;Golgi apparatus part;0.00013665673548544!GO:0031410;cytoplasmic vesicle;0.000142196569716381!GO:0016564;transcription repressor activity;0.000159774831602326!GO:0007093;mitotic cell cycle checkpoint;0.000173343456965671!GO:0051789;response to protein stimulus;0.000194485428976787!GO:0006986;response to unfolded protein;0.000194485428976787!GO:0005770;late endosome;0.000200715541860507!GO:0016563;transcription activator activity;0.000202666496794101!GO:0019899;enzyme binding;0.000203135641966415!GO:0000049;tRNA binding;0.000209930679950311!GO:0032259;methylation;0.000251462250977724!GO:0006520;amino acid metabolic process;0.000267357425771448!GO:0043069;negative regulation of programmed cell death;0.000272233353987453!GO:0051087;chaperone binding;0.000273880560539119!GO:0043066;negative regulation of apoptosis;0.000302722628659266!GO:0003714;transcription corepressor activity;0.00031999714294201!GO:0007006;mitochondrial membrane organization and biogenesis;0.000327384634981669!GO:0007088;regulation of mitosis;0.000330727182368756!GO:0008033;tRNA processing;0.000342894442756128!GO:0005669;transcription factor TFIID complex;0.000355780513713809!GO:0043414;biopolymer methylation;0.000359456866205227!GO:0005684;U2-dependent spliceosome;0.000375769058567111!GO:0043681;protein import into mitochondrion;0.00039038452693718!GO:0006818;hydrogen transport;0.000399785010549758!GO:0000139;Golgi membrane;0.000406349555922121!GO:0006405;RNA export from nucleus;0.000423922500746456!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000428316454273575!GO:0006414;translational elongation;0.000432295998110805!GO:0042981;regulation of apoptosis;0.000451061358122811!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000456233983532743!GO:0044454;nuclear chromosome part;0.000463840869749591!GO:0031324;negative regulation of cellular metabolic process;0.000467855929795175!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000475939732321247!GO:0003924;GTPase activity;0.000513299504840325!GO:0000793;condensed chromosome;0.000522538736758695!GO:0040029;regulation of gene expression, epigenetic;0.000522538736758695!GO:0043067;regulation of programmed cell death;0.000522538736758695!GO:0005789;endoplasmic reticulum membrane;0.000526508499334366!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000532489361741579!GO:0005769;early endosome;0.000538340055980294!GO:0006611;protein export from nucleus;0.000559748299735689!GO:0015992;proton transport;0.000577217024242678!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000583315606240194!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.000651206660393613!GO:0005637;nuclear inner membrane;0.000652691610398163!GO:0019843;rRNA binding;0.000654887907014125!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000659598846869977!GO:0006338;chromatin remodeling;0.000669321617591294!GO:0005839;proteasome core complex (sensu Eukaryota);0.000682652498944744!GO:0032508;DNA duplex unwinding;0.000692421036191183!GO:0032392;DNA geometric change;0.000692421036191183!GO:0030867;rough endoplasmic reticulum membrane;0.000719602699261284!GO:0006916;anti-apoptosis;0.000741612025703122!GO:0046914;transition metal ion binding;0.000758640827924143!GO:0006310;DNA recombination;0.000810130456809274!GO:0008654;phospholipid biosynthetic process;0.000922215841446599!GO:0016310;phosphorylation;0.000951463326664785!GO:0007052;mitotic spindle organization and biogenesis;0.000951463326664785!GO:0007264;small GTPase mediated signal transduction;0.000970805212429275!GO:0016853;isomerase activity;0.000971050797406309!GO:0048487;beta-tubulin binding;0.00103949022062222!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00110437934494409!GO:0032561;guanyl ribonucleotide binding;0.00114336058659571!GO:0019001;guanyl nucleotide binding;0.00114336058659571!GO:0051920;peroxiredoxin activity;0.00123224820481982!GO:0006612;protein targeting to membrane;0.00123861526505284!GO:0009165;nucleotide biosynthetic process;0.00126457977563108!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00131557756480017!GO:0019783;small conjugating protein-specific protease activity;0.0013925414744366!GO:0008250;oligosaccharyl transferase complex;0.00140967578150329!GO:0015980;energy derivation by oxidation of organic compounds;0.00164786095084158!GO:0051252;regulation of RNA metabolic process;0.00166221656281442!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00166737607801524!GO:0009892;negative regulation of metabolic process;0.00166865667998513!GO:0004298;threonine endopeptidase activity;0.00167768024697389!GO:0006541;glutamine metabolic process;0.00169849204928625!GO:0000922;spindle pole;0.00171280563410854!GO:0048471;perinuclear region of cytoplasm;0.00172320878234615!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00181756346876442!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00183160871285637!GO:0000725;recombinational repair;0.00187419246743772!GO:0000724;double-strand break repair via homologous recombination;0.00187419246743772!GO:0006268;DNA unwinding during replication;0.00200034465574571!GO:0004527;exonuclease activity;0.0021421552636855!GO:0045454;cell redox homeostasis;0.00222124712337772!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00233060723191766!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00233060723191766!GO:0031252;leading edge;0.00234053154835018!GO:0042393;histone binding;0.00252998904414019!GO:0005798;Golgi-associated vesicle;0.00261674053680609!GO:0000786;nucleosome;0.00263618381516674!GO:0004843;ubiquitin-specific protease activity;0.00270768679735937!GO:0016272;prefoldin complex;0.00275111868239526!GO:0003746;translation elongation factor activity;0.00279690860779319!GO:0006730;one-carbon compound metabolic process;0.0029109232097782!GO:0003684;damaged DNA binding;0.00297450066271313!GO:0003711;transcription elongation regulator activity;0.00312028654117463!GO:0004221;ubiquitin thiolesterase activity;0.00313048480274423!GO:0005741;mitochondrial outer membrane;0.00316383433905607!GO:0006275;regulation of DNA replication;0.00317847468727662!GO:0000792;heterochromatin;0.00347261983808185!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00351910309899457!GO:0048500;signal recognition particle;0.0035197774790642!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00354503884642956!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00354503884642956!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00354503884642956!GO:0032200;telomere organization and biogenesis;0.00364262254652431!GO:0000723;telomere maintenance;0.00364262254652431!GO:0016787;hydrolase activity;0.00375385431622086!GO:0006626;protein targeting to mitochondrion;0.00378692129902114!GO:0009112;nucleobase metabolic process;0.00384288977852103!GO:0005876;spindle microtubule;0.00391955673153576!GO:0005788;endoplasmic reticulum lumen;0.00399399362206774!GO:0006144;purine base metabolic process;0.00410531546160122!GO:0016790;thiolester hydrolase activity;0.00411964594306556!GO:0006417;regulation of translation;0.0041202583519796!GO:0016481;negative regulation of transcription;0.00432604007527371!GO:0003702;RNA polymerase II transcription factor activity;0.00443356261530364!GO:0035258;steroid hormone receptor binding;0.00447714294338427!GO:0009451;RNA modification;0.00454573692062251!GO:0008652;amino acid biosynthetic process;0.0045852640911298!GO:0044450;microtubule organizing center part;0.00471009298037499!GO:0006284;base-excision repair;0.00484906880453641!GO:0005048;signal sequence binding;0.00499559603650488!GO:0048523;negative regulation of cellular process;0.0051813709220216!GO:0005885;Arp2/3 protein complex;0.00525271479477129!GO:0043022;ribosome binding;0.00540786751576288!GO:0008017;microtubule binding;0.00558021908404932!GO:0005791;rough endoplasmic reticulum;0.00560101812455313!GO:0042802;identical protein binding;0.00560779677981595!GO:0004674;protein serine/threonine kinase activity;0.00578624382659337!GO:0031968;organelle outer membrane;0.00638308458444131!GO:0016584;nucleosome positioning;0.00658355694669839!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00676681187063135!GO:0042026;protein refolding;0.00682788007051389!GO:0016859;cis-trans isomerase activity;0.00694637197429764!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00697753273790395!GO:0004576;oligosaccharyl transferase activity;0.0072341415369296!GO:0008632;apoptotic program;0.00725351127711216!GO:0006839;mitochondrial transport;0.00725351127711216!GO:0019867;outer membrane;0.00743903123320401!GO:0030118;clathrin coat;0.00766695305900224!GO:0046474;glycerophospholipid biosynthetic process;0.00768164512900623!GO:0006306;DNA methylation;0.00778433257812023!GO:0006305;DNA alkylation;0.00778433257812023!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00782755473180004!GO:0030134;ER to Golgi transport vesicle;0.00798745934512261!GO:0006891;intra-Golgi vesicle-mediated transport;0.00808982872454607!GO:0007021;tubulin folding;0.00810213554609208!GO:0007004;telomere maintenance via telomerase;0.00824675577006446!GO:0008139;nuclear localization sequence binding;0.0083112661429028!GO:0033116;ER-Golgi intermediate compartment membrane;0.00852363832379064!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0086053027022222!GO:0015002;heme-copper terminal oxidase activity;0.0086053027022222!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0086053027022222!GO:0004129;cytochrome-c oxidase activity;0.0086053027022222!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0086053027022222!GO:0004003;ATP-dependent DNA helicase activity;0.00866258770731639!GO:0030521;androgen receptor signaling pathway;0.00866258770731639!GO:0000152;nuclear ubiquitin ligase complex;0.00884036944086463!GO:0008092;cytoskeletal protein binding;0.00884642607653149!GO:0008312;7S RNA binding;0.00890567224450487!GO:0008276;protein methyltransferase activity;0.00890567224450487!GO:0006376;mRNA splice site selection;0.00900396223655913!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00900396223655913!GO:0005832;chaperonin-containing T-complex;0.00903332472102907!GO:0000096;sulfur amino acid metabolic process;0.0095351395428818!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00989580010224551!GO:0045047;protein targeting to ER;0.00989580010224551!GO:0000123;histone acetyltransferase complex;0.0105573768565398!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0106270466310362!GO:0045947;negative regulation of translational initiation;0.0106658951484477!GO:0005732;small nucleolar ribonucleoprotein complex;0.0109081887272939!GO:0006007;glucose catabolic process;0.0109081887272939!GO:0043624;cellular protein complex disassembly;0.0117014233218373!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0123845606804375!GO:0045892;negative regulation of transcription, DNA-dependent;0.0124885866255746!GO:0043596;nuclear replication fork;0.0125156499899091!GO:0009116;nucleoside metabolic process;0.0131207063623821!GO:0018196;peptidyl-asparagine modification;0.0131866553459231!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0131866553459231!GO:0032984;macromolecular complex disassembly;0.0132641299688034!GO:0001824;blastocyst development;0.0133384056073158!GO:0006519;amino acid and derivative metabolic process;0.0136115963793583!GO:0031577;spindle checkpoint;0.0138133826435962!GO:0045045;secretory pathway;0.0138222351449553!GO:0031570;DNA integrity checkpoint;0.0138616743377966!GO:0035267;NuA4 histone acetyltransferase complex;0.0143216215392565!GO:0000209;protein polyubiquitination;0.014506593324!GO:0006400;tRNA modification;0.0146909896104829!GO:0045786;negative regulation of progression through cell cycle;0.0149381135433479!GO:0022411;cellular component disassembly;0.0150849616928134!GO:0005758;mitochondrial intermembrane space;0.0160443390239174!GO:0005773;vacuole;0.0162211136994854!GO:0005938;cell cortex;0.0163576973728128!GO:0006289;nucleotide-excision repair;0.0164742909735673!GO:0030663;COPI coated vesicle membrane;0.0166067437796497!GO:0030126;COPI vesicle coat;0.0166067437796497!GO:0043488;regulation of mRNA stability;0.0166964100280766!GO:0043487;regulation of RNA stability;0.0166964100280766!GO:0051539;4 iron, 4 sulfur cluster binding;0.0167723645477449!GO:0000790;nuclear chromatin;0.017118374123446!GO:0006304;DNA modification;0.0174508956796513!GO:0030027;lamellipodium;0.0174508956796513!GO:0008180;signalosome;0.017548426187286!GO:0000781;chromosome, telomeric region;0.0177073428490874!GO:0048037;cofactor binding;0.0182132772969526!GO:0030127;COPII vesicle coat;0.0182432075280618!GO:0012507;ER to Golgi transport vesicle membrane;0.0182432075280618!GO:0050662;coenzyme binding;0.0182495124111188!GO:0000910;cytokinesis;0.0183260749840632!GO:0051053;negative regulation of DNA metabolic process;0.0185019047748774!GO:0000178;exosome (RNase complex);0.0185340800816195!GO:0001701;in utero embryonic development;0.0187223306756617!GO:0019752;carboxylic acid metabolic process;0.0194298219496664!GO:0004532;exoribonuclease activity;0.0195454547097111!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0195454547097111!GO:0009303;rRNA transcription;0.0195622003479824!GO:0006406;mRNA export from nucleus;0.0196974455724978!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0196974455724978!GO:0015399;primary active transmembrane transporter activity;0.0196974455724978!GO:0030658;transport vesicle membrane;0.0197571557072111!GO:0046822;regulation of nucleocytoplasmic transport;0.0207450956190373!GO:0048519;negative regulation of biological process;0.0207982999443365!GO:0043189;H4/H2A histone acetyltransferase complex;0.0208377789321793!GO:0006278;RNA-dependent DNA replication;0.0210514245283699!GO:0005774;vacuolar membrane;0.0213375126109365!GO:0043241;protein complex disassembly;0.0213757378955954!GO:0031901;early endosome membrane;0.0214126449242947!GO:0008629;induction of apoptosis by intracellular signals;0.0217192408561557!GO:0031625;ubiquitin protein ligase binding;0.0218210911869666!GO:0006509;membrane protein ectodomain proteolysis;0.0220986038785883!GO:0033619;membrane protein proteolysis;0.0220986038785883!GO:0030036;actin cytoskeleton organization and biogenesis;0.0222397823539129!GO:0030032;lamellipodium biogenesis;0.0223976511166004!GO:0030131;clathrin adaptor complex;0.0225291527805938!GO:0008234;cysteine-type peptidase activity;0.0226875121810607!GO:0022890;inorganic cation transmembrane transporter activity;0.0228063746025727!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.023322577701232!GO:0000339;RNA cap binding;0.0239928023049295!GO:0006082;organic acid metabolic process;0.0240874703079021!GO:0008022;protein C-terminus binding;0.0241512083586381!GO:0000097;sulfur amino acid biosynthetic process;0.0245718699653452!GO:0031124;mRNA 3'-end processing;0.0247094281142215!GO:0006270;DNA replication initiation;0.0248580789915053!GO:0031970;organelle envelope lumen;0.024879285461942!GO:0030031;cell projection biogenesis;0.0255445274012197!GO:0006367;transcription initiation from RNA polymerase II promoter;0.026454784673213!GO:0016197;endosome transport;0.0268892186794901!GO:0005666;DNA-directed RNA polymerase III complex;0.0269197815558764!GO:0005663;DNA replication factor C complex;0.0270517287155685!GO:0030119;AP-type membrane coat adaptor complex;0.0270517287155685!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0271049130308482!GO:0042770;DNA damage response, signal transduction;0.0273713939636727!GO:0031326;regulation of cellular biosynthetic process;0.0280960432359387!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0286716500392211!GO:0008097;5S rRNA binding;0.0289351579051226!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0290036542077037!GO:0006595;polyamine metabolic process;0.0292155312451198!GO:0006607;NLS-bearing substrate import into nucleus;0.0292155312451198!GO:0050811;GABA receptor binding;0.0293783048131549!GO:0046483;heterocycle metabolic process;0.0294069555039944!GO:0046467;membrane lipid biosynthetic process;0.0296753590423502!GO:0006301;postreplication repair;0.0297604385079297!GO:0006516;glycoprotein catabolic process;0.0298017343665895!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0298825365448193!GO:0065009;regulation of a molecular function;0.0299630456806177!GO:0000118;histone deacetylase complex;0.031886651813471!GO:0008143;poly(A) binding;0.0323537118284465!GO:0006984;ER-nuclear signaling pathway;0.0330052626248918!GO:0046426;negative regulation of JAK-STAT cascade;0.0330052626248918!GO:0044262;cellular carbohydrate metabolic process;0.0336841053258645!GO:0030518;steroid hormone receptor signaling pathway;0.0340660816853132!GO:0005784;translocon complex;0.0341745675563958!GO:0030137;COPI-coated vesicle;0.0342206320573221!GO:0031902;late endosome membrane;0.0348267016823384!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0349018836919687!GO:0006564;L-serine biosynthetic process;0.0355889034501428!GO:0000819;sister chromatid segregation;0.0356516482997501!GO:0050178;phenylpyruvate tautomerase activity;0.035756679702049!GO:0043130;ubiquitin binding;0.0366099140950295!GO:0032182;small conjugating protein binding;0.0366099140950295!GO:0030660;Golgi-associated vesicle membrane;0.0369986827493925!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0369986827493925!GO:0008320;protein transmembrane transporter activity;0.0378822993480722!GO:0009113;purine base biosynthetic process;0.0378830282427612!GO:0006378;mRNA polyadenylation;0.0381496132099551!GO:0051348;negative regulation of transferase activity;0.0381496132099551!GO:0022884;macromolecule transmembrane transporter activity;0.0383945712562858!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0383945712562858!GO:0042769;DNA damage response, detection of DNA damage;0.0386494224567666!GO:0006733;oxidoreduction coenzyme metabolic process;0.0386494224567666!GO:0051101;regulation of DNA binding;0.0387171474227276!GO:0005996;monosaccharide metabolic process;0.0397092692152096!GO:0033673;negative regulation of kinase activity;0.0399910735812206!GO:0006469;negative regulation of protein kinase activity;0.0399910735812206!GO:0008536;Ran GTPase binding;0.0402593144562004!GO:0016407;acetyltransferase activity;0.0404536916231082!GO:0009070;serine family amino acid biosynthetic process;0.040534131614736!GO:0032981;mitochondrial respiratory chain complex I assembly;0.04097346419614!GO:0010257;NADH dehydrogenase complex assembly;0.04097346419614!GO:0033108;mitochondrial respiratory chain complex assembly;0.04097346419614!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.04097346419614!GO:0005844;polysome;0.04097346419614!GO:0019318;hexose metabolic process;0.0418218311080111!GO:0005905;coated pit;0.0422673421528864!GO:0031123;RNA 3'-end processing;0.0422907993940983!GO:0001832;blastocyst growth;0.0422907993940983!GO:0000726;non-recombinational repair;0.042748429806781!GO:0043601;nuclear replisome;0.0434182672923831!GO:0030894;replisome;0.0434182672923831!GO:0004518;nuclease activity;0.0436149975955203!GO:0030515;snoRNA binding;0.0437436673542831!GO:0046489;phosphoinositide biosynthetic process;0.0437853600283138!GO:0042982;amyloid precursor protein metabolic process;0.044120348868714!GO:0000070;mitotic sister chromatid segregation;0.0442187988468898!GO:0006360;transcription from RNA polymerase I promoter;0.0449190675638969!GO:0000077;DNA damage checkpoint;0.0462125108856781!GO:0017134;fibroblast growth factor binding;0.0463859545682685!GO:0008156;negative regulation of DNA replication;0.0467814775505222!GO:0001725;stress fiber;0.0470876342223317!GO:0032432;actin filament bundle;0.0470876342223317!GO:0044437;vacuolar part;0.0472921539495567!GO:0006740;NADPH regeneration;0.0473022101617878!GO:0006098;pentose-phosphate shunt;0.0473022101617878!GO:0001522;pseudouridine synthesis;0.047412949839911!GO:0005862;muscle thin filament tropomyosin;0.0476335600511831!GO:0046365;monosaccharide catabolic process;0.0479044742157305!GO:0033130;acetylcholine receptor binding;0.047943979982471!GO:0009066;aspartate family amino acid metabolic process;0.0480209882942675!GO:0003747;translation release factor activity;0.0495729651530738!GO:0008079;translation termination factor activity;0.0495729651530738!GO:0006096;glycolysis;0.0496045821497943
|sample_id=10591
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=testis
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10591-108D6;search_select_hide=table117:FF:10591-108D6
}}
}}

Latest revision as of 14:30, 3 June 2020

Name:testicular germ cell embryonal carcinoma cell line:NEC14
Species:Human (Homo sapiens)
Library ID:CNhs12351
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetestis
dev stageNA
sexmale
age26
cell typeunclassifiable
cell lineNEC14
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004817
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12351 CAGE DRX008023 DRR008895
Accession ID Hg19

Library idBAMCTSS
CNhs12351 DRZ000320 DRZ001705
Accession ID Hg38

Library idBAMCTSS
CNhs12351 DRZ011670 DRZ013055
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.186
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.454
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP1.015
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0.103
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0.316
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.069
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.433
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0.186
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.111
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.166
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.103
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.089
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0.103
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.226
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0157
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.443
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.186
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0183
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0.256
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0.416
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12351

Jaspar motifP-value
MA0002.26.78226e-4
MA0003.10.415
MA0004.10.0743
MA0006.10.54
MA0007.10.901
MA0009.10.824
MA0014.10.412
MA0017.10.735
MA0018.20.024
MA0019.10.167
MA0024.19.12145e-5
MA0025.10.167
MA0027.10.483
MA0028.16.74185e-5
MA0029.10.987
MA0030.10.447
MA0031.10.472
MA0035.21
MA0038.16.62832e-4
MA0039.27.09783e-4
MA0040.10.792
MA0041.10.185
MA0042.10.658
MA0043.10.0421
MA0046.10.439
MA0047.20.451
MA0048.10.114
MA0050.15.00476e-15
MA0051.17.91281e-9
MA0052.10.0467
MA0055.10.0049
MA0057.10.466
MA0058.10.00949
MA0059.10.0389
MA0060.17.64175e-13
MA0061.10.0142
MA0062.20.00638
MA0065.20.115
MA0066.10.657
MA0067.10.699
MA0068.10.015
MA0069.10.75
MA0070.10.29
MA0071.10.304
MA0072.10.895
MA0073.10.696
MA0074.10.0549
MA0076.12.74889e-4
MA0077.10.0531
MA0078.10.6
MA0079.20.632
MA0080.21.653e-10
MA0081.10.0797
MA0083.10.00457
MA0084.10.38
MA0087.10.852
MA0088.10.149
MA0090.10.609
MA0091.10.00894
MA0092.10.0376
MA0093.10.0274
MA0099.23.50326e-8
MA0100.10.301
MA0101.10.128
MA0102.20.025
MA0103.17.80937e-4
MA0104.20.0289
MA0105.10.312
MA0106.10.575
MA0107.10.00987
MA0108.20.0995
MA0111.10.922
MA0112.20.0739
MA0113.10.0512
MA0114.10.285
MA0115.10.0777
MA0116.10.909
MA0117.10.651
MA0119.10.0571
MA0122.10.807
MA0124.10.958
MA0125.10.132
MA0131.10.288
MA0135.10.748
MA0136.13.65808e-7
MA0137.20.533
MA0138.20.403
MA0139.10.282
MA0140.10.411
MA0141.11
MA0142.16.29259e-24
MA0143.11.62707e-6
MA0144.10.0219
MA0145.10.718
MA0146.10.784
MA0147.10.0337
MA0148.10.447
MA0149.10.872
MA0150.10.0163
MA0152.10.981
MA0153.10.514
MA0154.10.743
MA0155.10.65
MA0156.10.00373
MA0157.10.0858
MA0159.10.898
MA0160.10.651
MA0162.10.933
MA0163.10.268
MA0164.10.646
MA0258.10.516
MA0259.10.073



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12351

Novel motifP-value
10.558
100.526
1000.405
1010.658
1020.458
1030.0237
1040.258
1050.437
1060.00965
1070.203
1080.797
1090.467
110.467
1100.942
1110.212
1120.643
1130.0639
1140.0768
1150.442
1160.889
1170.969
1180.66
1190.533
120.756
1200.189
1210.576
1220.406
1230.382
1240.0924
1250.929
1260.833
1270.218
1280.448
1290.908
130.546
1300.7
1310.82
1320.751
1331.72092e-4
1340.0174
1350.015
1360.094
1370.529
1380.136
1390.358
140.853
1400.746
1410.83
1420.448
1430.00328
1440.277
1450.314
1460.278
1470.897
1480.0448
1490.00668
150.138
1500.379
1510.037
1520.1
1530.679
1540.441
1550.607
1560.0876
1570.548
1580.723
1590.987
160.384
1600.767
1610.879
1620.601
1630.884
1640.738
1650.997
1660.308
1670.344
1680.355
1690.281
170.682
180.878
190.182
20.369
200.939
210.736
220.209
230.00876
240.675
250.787
260.861
270.594
280.563
290.486
30.221
300.537
310.463
320.00413
330.534
340.591
350.831
360.742
370.407
380.829
390.365
40.866
400.293
410.294
420.84
430.231
440.769
450.602
460.614
470.0556
480.437
490.28
50.0557
500.67
510.897
520.527
530.832
540.479
550.535
560.88
570.694
580.0631
590.258
60.688
600.274
610.418
620.018
630.354
640.747
650.141
660.451
670.725
680.261
690.488
70.824
700.0346
710.177
720.619
730.0363
740.95
750.719
760.824
770.149
780.92
790.0779
80.0711
800.135
810.266
820.336
830.0196
840.907
850.178
860.806
870.206
880.586
890.0502
90.108
900.123
910.291
920.0612
930.277
940.515
950.677
960.0398
970.731
980.906
990.733



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12351


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

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