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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005307
|DRA_sample_Accession=CAGE@SAMD00005307
|accession_numbers=CAGE;DRX007846;DRR008718;DRZ000143;DRZ001528
|accession_numbers=CAGE;DRX007846;DRR008718;DRZ000143;DRZ001528;DRZ011493;DRZ012878
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|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg38.nobarcode.ctss.bed.gz
|id=FF:10553-107I4
|id=FF:10553-107I4
|is_a=EFO:0002091;;FF:0000210;;FF:0101967
|is_a=EFO:0002091;;FF:0000210;;FF:0101967
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|library_id=CNhs11289
|library_id=CNhs11289
|library_id_phase_based=2:CNhs11289
|library_id_phase_based=2:CNhs11289
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10553
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10553
|name=cervical cancer cell line:ME-180
|name=cervical cancer cell line:ME-180
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
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Line 91: Line 100:
|top_motifs=VSX1,2:2.84221101066;ZEB1:2.35880127654;TP53:2.35365917096;SNAI1..3:2.12188349556;FOXQ1:2.095845987;TBX4,5:2.00090094834;RBPJ:1.87405357493;NANOG:1.86637988822;PDX1:1.71635975708;FOXN1:1.63878702793;NKX2-1,4:1.57603927254;MYOD1:1.56363880008;TBP:1.55473303948;ADNP_IRX_SIX_ZHX:1.47997413472;ZNF148:1.42692526282;NKX2-3_NKX2-5:1.39870942617;ATF4:1.34101411585;TEF:1.31390731149;TFAP2{A,C}:1.25961153285;FOXM1:1.25931867685;ARID5B:1.18981364479;HOX{A4,D4}:1.18599564387;CDC5L:1.17619537822;NR6A1:1.17272236461;ONECUT1,2:1.13491747219;TFDP1:1.02777553589;SP1:0.978544036507;NKX6-1,2:0.972708765499;XCPE1{core}:0.961885330042;T:0.959346932738;E2F1..5:0.922178282121;LHX3,4:0.914949063303;TFCP2:0.907558938103;FOXL1:0.888433116828;NFY{A,B,C}:0.881286193852;LMO2:0.87529969995;ZNF423:0.870698129786;CRX:0.749783472512;GFI1B:0.722468217272;HOX{A6,A7,B6,B7}:0.719670952931;FOS_FOS{B,L1}_JUN{B,D}:0.697305092216;FOXP1:0.675649471364;ELK1,4_GABP{A,B1}:0.666133649829;GTF2A1,2:0.665157194626;ATF5_CREB3:0.646275189173;POU1F1:0.626090979699;FOXO1,3,4:0.625959773891;TEAD1:0.592096974281;HAND1,2:0.585157157339;ATF2:0.542060562191;CEBPA,B_DDIT3:0.49123974551;EGR1..3:0.475590083187;MED-1{core}:0.455070656732;NR5A1,2:0.43076794254;POU6F1:0.409220634779;bHLH_family:0.392319788612;JUN:0.386440394563;ZIC1..3:0.379810597377;SOX2:0.370637506739;LEF1_TCF7_TCF7L1,2:0.335550763342;CDX1,2,4:0.320369089559;IKZF1:0.319023874644;IRF7:0.314326001668;TAL1_TCF{3,4,12}:0.3100926026;EBF1:0.279637599243;PITX1..3:0.263423892414;GZF1:0.260561675202;PAX2:0.252860992984;FOX{I1,J2}:0.251880226804;HSF1,2:0.234511264157;MTE{core}:0.233980256176;HMX1:0.180069285581;NFE2:0.174061281177;BREu{core}:0.159812502473;HLF:0.152642210817;PAX4:0.146082615672;HIC1:0.145083850794;FOSL2:0.137449185171;MAZ:0.135090333087;SOX5:0.130411508592;ZNF143:0.129155361197;FOX{F1,F2,J1}:0.127259788757;FOX{D1,D2}:0.127137504186;ZBTB16:0.124482075664;NRF1:0.123299882304;NFIX:0.121648564483;PPARG:0.104333136155;NFIL3:0.0976861189363;AR:0.09517922852;OCT4_SOX2{dimer}:0.0847402058378;EN1,2:0.0840595318952;POU2F1..3:0.0674352550374;YY1:0.0601292325323;TOPORS:0.041992573321;ZNF384:0.0253965759474;FOXD3:0.0193685989956;POU5F1:0.0122872997047;ESR1:-0.00127173071768;ELF1,2,4:-0.0125973917744;PRRX1,2:-0.020973493354;SRF:-0.023013073071;BACH2:-0.036495946898;TGIF1:-0.0423473391047;ZBTB6:-0.0424942066085;BPTF:-0.0500163440394;PAX5:-0.0510988791847;GLI1..3:-0.0523182819862;MYBL2:-0.0550321561419;TFAP2B:-0.060718072347;GFI1:-0.0820308743676;TLX1..3_NFIC{dimer}:-0.0822409018827;RFX2..5_RFXANK_RFXAP:-0.0835660056157;SOX{8,9,10}:-0.0840498585033;ZFP161:-0.0886290723693;MEF2{A,B,C,D}:-0.090487578381;HNF1A:-0.0922289398448;PAX6:-0.13282444523;MAFB:-0.141689774568;CREB1:-0.161605554946;PBX1:-0.162681583455;HOXA9_MEIS1:-0.168733623044;RORA:-0.186932284435;REST:-0.193179248394;GTF2I:-0.205050122402;SOX17:-0.248620351662;KLF4:-0.25037074395;RFX1:-0.255718685553;FOXP3:-0.257337848868;NFE2L2:-0.275219603045;HBP1_HMGB_SSRP1_UBTF:-0.284941040257;TLX2:-0.286111257757;GCM1,2:-0.28880456167;PAX1,9:-0.295253636965;AIRE:-0.299506439577;HOX{A5,B5}:-0.300072726314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.346850856036;ZNF238:-0.356715865411;HNF4A_NR2F1,2:-0.372935130142;NFKB1_REL_RELA:-0.376704720799;MTF1:-0.388881417981;MYB:-0.392296627225;CUX2:-0.414186330362;EP300:-0.42608488492;IRF1,2:-0.431153367257;IKZF2:-0.460328581273;GATA6:-0.465590270546;PAX8:-0.484852965398;RREB1:-0.492261149124;MYFfamily:-0.498282022238;UFEwm:-0.517810223687;SMAD1..7,9:-0.520210524293;STAT5{A,B}:-0.534527832247;NR1H4:-0.548822157006;DBP:-0.55270968267;SPIB:-0.553618124073;SREBF1,2:-0.556651852502;NHLH1,2:-0.559133466845;NKX3-2:-0.592492063861;STAT1,3:-0.593575402149;ETS1,2:-0.620701452086;FOXA2:-0.622681707259;ESRRA:-0.633750403464;NKX2-2,8:-0.639208037701;HIF1A:-0.659955271272;AHR_ARNT_ARNT2:-0.665618440135;DMAP1_NCOR{1,2}_SMARC:-0.682456301795;EVI1:-0.712635068837;SPI1:-0.722775138853;NKX3-1:-0.727389812227;STAT2,4,6:-0.755660943737;NFE2L1:-0.78710620186;ALX4:-0.815312176092;RUNX1..3:-0.862152602661;PATZ1:-0.877870053377;RXR{A,B,G}:-0.884258211947;MZF1:-0.897708690076;PRDM1:-0.943915487563;GATA4:-0.964369976508;RXRA_VDR{dimer}:-0.968070452311;HES1:-0.978838138468;HMGA1,2:-0.982336720345;ALX1:-1.00856179343;ATF6:-1.08585154409;NR3C1:-1.15680050765;NFATC1..3:-1.22525546834;TFAP4:-1.26328974371;PAX3,7:-1.28084184954;XBP1:-1.32629854076;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.59801895605;POU3F1..4:-1.76825341356;NANOG{mouse}:-1.85752661982;SPZ1:-2.15875843252
|top_motifs=VSX1,2:2.84221101066;ZEB1:2.35880127654;TP53:2.35365917096;SNAI1..3:2.12188349556;FOXQ1:2.095845987;TBX4,5:2.00090094834;RBPJ:1.87405357493;NANOG:1.86637988822;PDX1:1.71635975708;FOXN1:1.63878702793;NKX2-1,4:1.57603927254;MYOD1:1.56363880008;TBP:1.55473303948;ADNP_IRX_SIX_ZHX:1.47997413472;ZNF148:1.42692526282;NKX2-3_NKX2-5:1.39870942617;ATF4:1.34101411585;TEF:1.31390731149;TFAP2{A,C}:1.25961153285;FOXM1:1.25931867685;ARID5B:1.18981364479;HOX{A4,D4}:1.18599564387;CDC5L:1.17619537822;NR6A1:1.17272236461;ONECUT1,2:1.13491747219;TFDP1:1.02777553589;SP1:0.978544036507;NKX6-1,2:0.972708765499;XCPE1{core}:0.961885330042;T:0.959346932738;E2F1..5:0.922178282121;LHX3,4:0.914949063303;TFCP2:0.907558938103;FOXL1:0.888433116828;NFY{A,B,C}:0.881286193852;LMO2:0.87529969995;ZNF423:0.870698129786;CRX:0.749783472512;GFI1B:0.722468217272;HOX{A6,A7,B6,B7}:0.719670952931;FOS_FOS{B,L1}_JUN{B,D}:0.697305092216;FOXP1:0.675649471364;ELK1,4_GABP{A,B1}:0.666133649829;GTF2A1,2:0.665157194626;ATF5_CREB3:0.646275189173;POU1F1:0.626090979699;FOXO1,3,4:0.625959773891;TEAD1:0.592096974281;HAND1,2:0.585157157339;ATF2:0.542060562191;CEBPA,B_DDIT3:0.49123974551;EGR1..3:0.475590083187;MED-1{core}:0.455070656732;NR5A1,2:0.43076794254;POU6F1:0.409220634779;bHLH_family:0.392319788612;JUN:0.386440394563;ZIC1..3:0.379810597377;SOX2:0.370637506739;LEF1_TCF7_TCF7L1,2:0.335550763342;CDX1,2,4:0.320369089559;IKZF1:0.319023874644;IRF7:0.314326001668;TAL1_TCF{3,4,12}:0.3100926026;EBF1:0.279637599243;PITX1..3:0.263423892414;GZF1:0.260561675202;PAX2:0.252860992984;FOX{I1,J2}:0.251880226804;HSF1,2:0.234511264157;MTE{core}:0.233980256176;HMX1:0.180069285581;NFE2:0.174061281177;BREu{core}:0.159812502473;HLF:0.152642210817;PAX4:0.146082615672;HIC1:0.145083850794;FOSL2:0.137449185171;MAZ:0.135090333087;SOX5:0.130411508592;ZNF143:0.129155361197;FOX{F1,F2,J1}:0.127259788757;FOX{D1,D2}:0.127137504186;ZBTB16:0.124482075664;NRF1:0.123299882304;NFIX:0.121648564483;PPARG:0.104333136155;NFIL3:0.0976861189363;AR:0.09517922852;OCT4_SOX2{dimer}:0.0847402058378;EN1,2:0.0840595318952;POU2F1..3:0.0674352550374;YY1:0.0601292325323;TOPORS:0.041992573321;ZNF384:0.0253965759474;FOXD3:0.0193685989956;POU5F1:0.0122872997047;ESR1:-0.00127173071768;ELF1,2,4:-0.0125973917744;PRRX1,2:-0.020973493354;SRF:-0.023013073071;BACH2:-0.036495946898;TGIF1:-0.0423473391047;ZBTB6:-0.0424942066085;BPTF:-0.0500163440394;PAX5:-0.0510988791847;GLI1..3:-0.0523182819862;MYBL2:-0.0550321561419;TFAP2B:-0.060718072347;GFI1:-0.0820308743676;TLX1..3_NFIC{dimer}:-0.0822409018827;RFX2..5_RFXANK_RFXAP:-0.0835660056157;SOX{8,9,10}:-0.0840498585033;ZFP161:-0.0886290723693;MEF2{A,B,C,D}:-0.090487578381;HNF1A:-0.0922289398448;PAX6:-0.13282444523;MAFB:-0.141689774568;CREB1:-0.161605554946;PBX1:-0.162681583455;HOXA9_MEIS1:-0.168733623044;RORA:-0.186932284435;REST:-0.193179248394;GTF2I:-0.205050122402;SOX17:-0.248620351662;KLF4:-0.25037074395;RFX1:-0.255718685553;FOXP3:-0.257337848868;NFE2L2:-0.275219603045;HBP1_HMGB_SSRP1_UBTF:-0.284941040257;TLX2:-0.286111257757;GCM1,2:-0.28880456167;PAX1,9:-0.295253636965;AIRE:-0.299506439577;HOX{A5,B5}:-0.300072726314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.346850856036;ZNF238:-0.356715865411;HNF4A_NR2F1,2:-0.372935130142;NFKB1_REL_RELA:-0.376704720799;MTF1:-0.388881417981;MYB:-0.392296627225;CUX2:-0.414186330362;EP300:-0.42608488492;IRF1,2:-0.431153367257;IKZF2:-0.460328581273;GATA6:-0.465590270546;PAX8:-0.484852965398;RREB1:-0.492261149124;MYFfamily:-0.498282022238;UFEwm:-0.517810223687;SMAD1..7,9:-0.520210524293;STAT5{A,B}:-0.534527832247;NR1H4:-0.548822157006;DBP:-0.55270968267;SPIB:-0.553618124073;SREBF1,2:-0.556651852502;NHLH1,2:-0.559133466845;NKX3-2:-0.592492063861;STAT1,3:-0.593575402149;ETS1,2:-0.620701452086;FOXA2:-0.622681707259;ESRRA:-0.633750403464;NKX2-2,8:-0.639208037701;HIF1A:-0.659955271272;AHR_ARNT_ARNT2:-0.665618440135;DMAP1_NCOR{1,2}_SMARC:-0.682456301795;EVI1:-0.712635068837;SPI1:-0.722775138853;NKX3-1:-0.727389812227;STAT2,4,6:-0.755660943737;NFE2L1:-0.78710620186;ALX4:-0.815312176092;RUNX1..3:-0.862152602661;PATZ1:-0.877870053377;RXR{A,B,G}:-0.884258211947;MZF1:-0.897708690076;PRDM1:-0.943915487563;GATA4:-0.964369976508;RXRA_VDR{dimer}:-0.968070452311;HES1:-0.978838138468;HMGA1,2:-0.982336720345;ALX1:-1.00856179343;ATF6:-1.08585154409;NR3C1:-1.15680050765;NFATC1..3:-1.22525546834;TFAP4:-1.26328974371;PAX3,7:-1.28084184954;XBP1:-1.32629854076;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.59801895605;POU3F1..4:-1.76825341356;NANOG{mouse}:-1.85752661982;SPZ1:-2.15875843252
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10553-107I4;search_select_hide=table117:FF:10553-107I4
}}
}}

Latest revision as of 14:29, 3 June 2020

Name:cervical cancer cell line:ME-180
Species:Human (Homo sapiens)
Library ID:CNhs11289
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecervix
dev stageNA
sexfemale
age66
cell typeunclassifiable
cell lineME-180
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005307
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11289 CAGE DRX007846 DRR008718
Accession ID Hg19

Library idBAMCTSS
CNhs11289 DRZ000143 DRZ001528
Accession ID Hg38

Library idBAMCTSS
CNhs11289 DRZ011493 DRZ012878
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
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C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11289

Jaspar motifP-value
MA0002.21.29618e-4
MA0003.10.095
MA0004.10.0484
MA0006.10.193
MA0007.10.243
MA0009.10.129
MA0014.10.127
MA0017.10.00287
MA0018.20.00726
MA0019.10.955
MA0024.16.15038e-4
MA0025.10.108
MA0027.10.77
MA0028.10.198
MA0029.10.269
MA0030.10.0516
MA0031.10.0512
MA0035.20.722
MA0038.10.0561
MA0039.20.00221
MA0040.10.253
MA0041.10.54
MA0042.10.754
MA0043.10.0308
MA0046.10.979
MA0047.20.5
MA0048.10.937
MA0050.10.0605
MA0051.10.329
MA0052.10.505
MA0055.10.218
MA0057.10.202
MA0058.10.0172
MA0059.10.0233
MA0060.13.06328e-8
MA0061.10.00276
MA0062.20.602
MA0065.20.0099
MA0066.10.0475
MA0067.10.709
MA0068.10.583
MA0069.10.396
MA0070.10.193
MA0071.10.125
MA0072.10.786
MA0073.10.998
MA0074.10.586
MA0076.10.0832
MA0077.10.703
MA0078.10.199
MA0079.20.321
MA0080.22.12406e-7
MA0081.10.00381
MA0083.10.253
MA0084.10.175
MA0087.10.537
MA0088.10.0496
MA0090.10.0689
MA0091.10.00431
MA0092.10.265
MA0093.10.0682
MA0099.20.781
MA0100.10.735
MA0101.10.0096
MA0102.20.608
MA0103.18.26834e-5
MA0104.20.262
MA0105.13.02901e-6
MA0106.12.05695e-5
MA0107.10.00604
MA0108.20.0015
MA0111.10.979
MA0112.24.41207e-4
MA0113.10.681
MA0114.10.067
MA0115.10.183
MA0116.10.00622
MA0117.10.72
MA0119.10.247
MA0122.10.522
MA0124.10.428
MA0125.15.8062e-5
MA0131.10.271
MA0135.10.188
MA0136.14.00482e-4
MA0137.20.0598
MA0138.20.0927
MA0139.10.583
MA0140.10.9
MA0141.10.107
MA0142.10.898
MA0143.10.417
MA0144.10.153
MA0145.10.568
MA0146.10.115
MA0147.10.213
MA0148.10.112
MA0149.10.238
MA0150.10.0574
MA0152.10.198
MA0153.10.62
MA0154.10.0152
MA0155.10.0515
MA0156.10.0499
MA0157.10.886
MA0159.10.715
MA0160.10.325
MA0162.10.432
MA0163.14.97097e-5
MA0164.10.236
MA0258.10.00409
MA0259.10.778



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11289

Novel motifP-value
10.175
100.0482
1000.934
1010.765
1020.374
1030.0682
1040.982
1050.45
1060.613
1070.989
1080.847
1090.711
110.122
1100.134
1110.0269
1120.315
1130.118
1140.018
1150.295
1160.121
1170.153
1180.0522
1190.244
120.943
1200.691
1210.917
1220.0585
1230.58
1240.211
1250.268
1260.733
1270.266
1280.137
1290.826
130.721
1300.205
1310.344
1320.237
1330.177
1340.424
1350.215
1360.0278
1370.0753
1380.582
1390.0998
140.92
1400.311
1410.935
1420.659
1430.0747
1440.13
1450.512
1460.194
1470.875
1480.103
1490.125
150.123
1500.952
1510.495
1520.793
1530.452
1540.928
1550.581
1560.54
1570.83
1580.287
1590.47
160.973
1600.142
1610.979
1620.93
1630.601
1640.121
1650.328
1660.203
1670.87
1680.905
1690.112
170.9
180.13
190.0401
20.918
200.738
210.717
220.214
230.163
240.452
250.767
260.247
270.396
280.316
290.493
30.101
300.158
310.166
320.00837
330.455
340.0909
350.0401
360.068
370.238
380.841
390.909
40.641
400.842
410.275
420.785
430.0842
440.751
450.718
460.213
470.355
480.463
490.0579
50.515
500.872
510.185
520.348
530.75
540.604
550.438
560.892
570.885
580.831
590.184
60.755
600.785
610.866
620.25
630.964
640.369
650.223
660.0252
670.639
680.142
690.468
70.616
700.385
710.314
720.743
730.632
740.00547
750.596
760.468
770.212
780.239
790.00944
80.168
800.354
810.14
820.0103
830.717
840.926
850.161
860.446
870.106
880.875
890.714
90.147
900.239
910.0798
920.193
930.648
940.00655
950.172
960.0308
970.648
980.0877
990.996



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11289


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101967 (cervical cancer cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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