FF:10553-107I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005307 | ||
|accession_numbers=CAGE;DRX007846;DRR008718;DRZ000143;DRZ001528;DRZ011493;DRZ012878 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000002,UBERON:0000995,UBERON:0003134,UBERON:0001560,UBERON:0005156,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:120,DOID:4362 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:193,DOID:120,DOID:4362 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101967 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:189507432..189507459,+!p1@TP63!2.46!290.42!TP63;;chr11:34642612..34642646,+!p1@EHF!2.25!178.18!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.18!238.55!FOXQ1;;chr17:48072574..48072597,-!p1@DLX3!2.14!138.17!DLX3;;chr5:134369879..134369898,-!p2@PITX1!2.14!135.80!PITX1;;chr17:7493405..7493419,-!p1@SOX15!2.11!126.88!SOX15;;chr12:52445218..52445237,+!p1@NR4A1!2.09!1447.22!NR4A1;;chr14:37131058..37131139,+!p1@PAX9!2.06!113.63!PAX9;;chr12:54785054..54785072,-!p4@ZNF385A!2.04!120.88!ZNF385A;;chr1:201979743..201979762,+!p1@ELF3!1.97!91.74!ELF3;;chr5:134369905..134369972,-!p1@PITX1!1.94!129.25!PITX1;;chr17:80797886..80797906,-!p1@ZNF750!1.94!86.44!ZNF750;;chr12:54785074..54785122,-!p2@ZNF385A!1.86!107.50!ZNF385A;;chr1:209979467..209979494,-!p1@IRF6!1.85!77.38!IRF6;;chr17:26833339..26833378,+!p1@FOXN1!1.77!58.42!FOXN1;;chr10:64576105..64576133,-!p1@EGR2!1.76!111.68!EGR2;;chr1:6479968..6479986,-!p1@HES2!1.75!55.77!HES2;;chr9:100615499..100615519,+!p1@FOXE1!1.74!54.10!FOXE1;;chr13:73633131..73633149,+!p1@KLF5!1.71!510.57!KLF5;;chr1:201979703..201979721,+!p2@ELF3!1.67!46.01!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.67!46.01!HOPX;;chr1:209979411..209979433,-!p2@IRF6!1.65!43.36!IRF6;;chr20:55204351..55204377,+!p1@TFAP2C!1.64!53.68!TFAP2C;;chr2:176969228..176969260,+!p1@HOXD11!1.64!42.66!HOXD11;;chr1:24645921..24645973,+!p2@GRHL3!1.63!41.41!GRHL3;;chr2:176969179..176969226,+!p2@HOXD11!1.62!40.29!HOXD11;;chr1:24645832..24645853,+!p1@GRHL3!1.59!37.64!GRHL3;;chr11:65554528..65554546,+!p1@OVOL1!1.56!35.41!OVOL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.32!ZBED1;;chr19:45971246..45971265,+!p1@FOSB!1.51!557.42!FOSB;;chr15:83953397..83953425,-!p1@BNC1!1.48!33.18!BNC1;;chr8:22550982..22550999,-!p1@EGR3!1.45!74.59!EGR3;;chr5:2751762..2751784,-!p1@IRX2!1.45!27.05!IRX2;;chr17:7492684..7492778,-!p2@SOX15!1.44!54.93!SOX15;;chr8:102504651..102504683,+!p1@GRHL2!1.43!26.21!GRHL2;;chr7:96654133..96654150,-!p1@DLX5!1.43!25.79!DLX5;;chr11:34642656..34642667,+!p2@EHF!1.42!25.24!EHF;;chr5:137804484..137804498,+!p2@EGR1!1.41!95.64!EGR1;;chr2:70142232..70142251,+!p1@MXD1!1.40!132.87!MXD1;;chr2:10091815..10091864,+!p1@GRHL1!1.40!31.79!GRHL1;;chr2:172967621..172967637,-!p1@DLX2!1.39!61.35!DLX2;;chr6:126240380..126240430,+!p2@NCOA7!1.38!57.86!NCOA7;;chr20:39317868..39317884,-!p1@MAFB!1.32!229.49!MAFB;;chr11:34645791..34645836,+!p3@EHF!1.32!19.66!EHF;;chr6:126240442..126240459,+!p4@NCOA7!1.31!24.96!NCOA7;;chr12:54332652..54332671,+!p2@HOXC13!1.31!19.24!HOXC13;;chr5:137801160..137801176,+!p1@EGR1!1.30!1817.39!EGR1;;chr11:65554563..65554576,+!p2@OVOL1!1.30!18.96!OVOL1;;chr6:10419768..10419819,-!p6@TFAP2A!1.30!18.82!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.29!111.12!ID4;;chr7:101460882..101460923,+!p5@CUX1!1.29!18.68!CUX1;;chr22:19748231..19748317,+!p1@TBX1!1.29!18.68!TBX1;;chr5:174151612..174151633,+!p2@MSX2!1.25!16.87!MSX2;;chr12:53625966..53626012,-!p2@RARG!1.22!41.27!RARG;;chr17:26833250..26833262,+!p2@FOXN1!1.22!15.48!FOXN1;;chr5:174151553..174151610,+!p1@MSX2!1.21!25.10!MSX2;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.34!SOX7;;chr12:54332608..54332636,+!p1@HOXC13!1.20!14.92!HOXC13;;chr3:189507460..189507471,+!p3@TP63!1.19!14.64!TP63;;chr12:54332687..54332701,+!p3@HOXC13!1.17!13.94!HOXC13;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!12.97!TFAP2A;;chr3:193853927..193853944,+!p1@HES1!1.13!404.75!HES1;;chr19:33865009..33865090,+!p3@CEBPG!1.13!16.73!CEBPG;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.41!HOXA9;;chr9:102584159..102584174,+!p2@NR4A3!1.12!22.03!NR4A3;;chr2:45236540..45236577,-!p1@SIX2!1.12!12.27!SIX2;;chr14:75745523..75745537,+!p1@FOS!1.11!1404.00!FOS;;chr9:110252035..110252057,-!p1@KLF4!1.11!191.01!KLF4;;chr4:57522166..57522260,-!p2@HOPX!1.11!13.66!HOPX;;chr11:129245526..129245553,+!p1@BARX2!1.09!11.43!BARX2;;chr11:2292226..2292270,-!p1@ASCL2!1.09!11.43!ASCL2;;chr1:24646002..24646013,+!p3@GRHL3!1.09!11.29!GRHL3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.08!97.46!PPP1R13L;;chr17:17726907..17726958,-!p2@SREBF1!1.07!67.76!SREBF1;;chr2:157189180..157189290,-!p1@NR4A2!1.07!56.61!NR4A2;;chr20:6748325..6748352,+!p1@BMP2!1.07!15.62!BMP2;;chr6:1389789..1389821,+!p1@FOXF2!1.07!14.92!FOXF2;;chr7:64838786..64838809,+!p2@ZNF92!1.06!60.37!ZNF92;;chr5:137804405..137804444,+!p3@EGR1!1.06!12.69!EGR1;;chr2:176969097..176969109,+!p3@HOXD11!1.06!10.60!HOXD11;;chr5:134369643..134369675,-!p4@PITX1!1.04!10.04!PITX1;;chr2:238592039..238592054,+!p4@LRRFIP1!1.04!9.90!LRRFIP1;;chr16:79634595..79634620,-!p2@MAF!1.03!17.85!MAF;;chrX:107018969..107019024,-!p6@TSC22D3!1.03!13.66!TSC22D3;;chr2:176969124..176969155,+!p5@HOXD11!1.03!9.76!HOXD11;;chr17:46687959..46688007,-!p2@HOXB7!1.02!13.25!HOXB7;;chr1:212782094..212782109,+!p1@ATF3!1.01!258.49!ATF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.00!11.01!TFAP2A;;chr19:12902289..12902307,+!p1@JUNB!0.99!2053.85!JUNB;;chr8:81787006..81787031,-!p2@ZNF704!0.96!8.09!ZNF704;;chr2:172949484..172949522,+!p1@DLX1!0.96!8.09!DLX1;;chr7:27205106..27205134,-!p2@HOXA9!0.95!7.95!HOXA9;;chr19:49139477..49139552,-!p4@DBP!0.94!10.04!DBP;;chr6:152128810..152128827,+!p2@ESR1!0.94!7.67!ESR1;;chr4:38665810..38665827,+!p1@KLF3!0.93!113.21!KLF3;;chr12:27485762..27485776,+!p3@ARNTL2!0.93!20.91!ARNTL2;;chr5:134369848..134369853,-!p6@PITX1!0.93!7.53!PITX1;;chr5:1887052..1887065,-!p2@IRX4!0.92!7.39!IRX4;;chr14:38064429..38064486,-!p1@FOXA1!0.92!7.39!FOXA1;;chr3:69915385..69915438,+!p3@MITF!0.92!7.39!MITF;;chr8:60031762..60031803,-!p3@TOX!0.91!10.60!TOX;;chr7:27224842..27224872,-!p1@HOXA11!0.91!7.11!HOXA11;;chr14:37132241..37132304,+!p3@PAX9!0.91!7.11!PAX9;;chr20:30193083..30193098,+!p1@ID1!0.90!592.97!ID1;;chr7:28448965..28448994,+!p2@CREB5!0.90!25.65!CREB5;;chr6:126240356..126240379,+!p7@NCOA7!0.90!8.64!NCOA7;;chr15:76629123..76629151,+!p1@ISL2!0.90!7.81!ISL2;;chr12:54348655..54348693,+!p1@HOXC12!0.90!6.97!HOXC12;;chr13:73636334..73636351,+!p6@KLF5!0.90!6.97!KLF5;;chr2:176994408..176994492,+!p1@HOXD8!0.89!6.83!HOXD8;;chr12:54332675..54332686,+!p4@HOXC13!0.89!6.69!HOXC13;;chr2:60780753..60780800,-!p1@BCL11A!0.88!34.02!BCL11A;;chr12:80084737..80084763,-!p3@PAWR!0.88!25.65!PAWR;;chr19:21324863..21324874,+!p2@ZNF431!0.88!11.99!ZNF431;;chr6:126240463..126240489,+!p6@NCOA7!0.88!7.53!NCOA7;;chr6:152126830..152126847,+!p4@ESR1!0.88!6.55!ESR1;;chr3:69915369..69915381,+!p4@MITF!0.88!6.55!MITF;;chr1:158979792..158979814,+!p2@IFI16!0.87!64.27!IFI16;;chr18:3449720..3449749,+!p2@TGIF1!0.87!14.22!TGIF1;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.46!ZFP64;;chr6:1312155..1312187,+!p2@FOXQ1!0.87!6.41!FOXQ1;;chr8:102504979..102505010,+!p2@GRHL2!0.87!6.41!GRHL2;;chr3:181429704..181429722,+!p1@SOX2!0.87!6.41!SOX2;;chr10:63661437..63661465,+!p2@ARID5B!0.86!127.29!ARID5B;;chr9:132427972..132428056,+!p1@PRRX2!0.86!8.37!PRRX2;;chr5:137804357..137804390,+!p4@EGR1!0.86!7.53!EGR1;;chr2:119605214..119605230,-!p1@EN1!0.86!6.27!EN1;;chr11:47236584..47236679,+!p1@DDB2!0.85!69.99!DDB2;;chr16:79634624..79634642,-!p1@MAF!0.85!25.51!MAF;;chr7:64254834..64254854,+!p2@ZNF138!0.85!11.43!ZNF138;;chr17:53342311..53342400,+!p1@HLF!0.85!7.11!HLF;;chr2:172950227..172950249,+!p2@DLX1!0.85!6.13!DLX1;;chr9:102584128..102584144,+!p3@NR4A3!0.84!11.71!NR4A3;;chr14:37051798..37051831,-!p1@NKX2-8!0.84!6.00!NKX2-8;;chr17:46703212..46703238,-!p2@HOXB9!0.84!5.86!HOXB9;;chr2:46524897..46524911,+!p2@EPAS1!0.83!16.87!EPAS1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.72!TFAP2A;;chr7:27239703..27239715,-!p1@HOXA13!0.83!5.72!HOXA13;;chr8:60031682..60031710,-!p2@TOX!0.82!9.34!TOX;;chr5:1887070..1887114,-!p1@IRX4!0.82!5.58!IRX4;;chr7:27239740..27239759,-!p2@HOXA13!0.82!5.58!HOXA13;;chr4:111544219..111544240,-!p1@PITX2!0.82!5.58!PITX2;;chr1:2461692..2461710,-!p1@HES5!0.82!5.58!HES5;;chr7:64254793..64254813,+!p1@ZNF138!0.81!67.34!ZNF138;;chr2:60780607..60780624,-!p2@BCL11A!0.81!17.85!BCL11A;;chr1:37940170..37940190,+!p1@ZC3H12A!0.80!71.25!ZC3H12A;;chr7:64126503..64126528,+!p1@ZNF107!0.80!40.99!ZNF107;;chr6:106534230..106534254,+!p2@PRDM1!0.80!14.08!PRDM1;;chr12:48298765..48298783,-!p2@VDR!0.80!11.57!VDR;;chr9:110251836..110251887,-!p4@KLF4!0.80!7.25!KLF4;;chr6:106546808..106546833,+!p3@PRDM1!0.80!6.83!PRDM1;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.27!MECOM;;chr5:137804130..137804156,+!p5@EGR1!0.80!5.72!EGR1;;chr3:138665937..138665968,-!p1@FOXL2!0.80!5.30!FOXL2;;chr1:10856639..10856662,-!p2@CASZ1!0.80!5.30!CASZ1;;chr11:16629261..16629284,-!p1@SOX6!0.80!5.30!SOX6;;chr12:54380036..54380091,+!p4@HOXC10!0.80!5.30!HOXC10;;chr17:46687935..46687950,-!p3@HOXB7!0.79!5.16!HOXB7;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.16!HOXA3;;chr7:64363638..64363667,+!p1@ZNF273!0.78!27.33!ZNF273;;chrX:131623044..131623089,-!p1@MBNL3!0.78!22.45!MBNL3;;chr12:52450298..52450331,+!p11@NR4A1!0.78!5.02!NR4A1;;chr3:141868293..141868355,-!p2@TFDP2!0.77!46.57!TFDP2;;chr7:64023441..64023462,-!p1@ZNF680!0.77!42.38!ZNF680;;chr9:102584262..102584276,+!p1@NR4A3!0.77!11.71!NR4A3;;chr16:54320675..54320715,-!p1@IRX3!0.77!11.29!IRX3;;chr6:28321909..28321965,-!p3@ZNF323!0.77!4.88!ZNF323;;chr7:114055245..114055258,+!p7@FOXP2!0.77!4.88!FOXP2;;chr7:27196267..27196311,-!p1@HOXA7!0.77!4.88!HOXA7;;chr1:10856665..10856683,-!p4@CASZ1!0.77!4.88!CASZ1;;chr4:81118647..81118666,+!p1@PRDM8!0.76!6.41!PRDM8;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.76!6.13!PRDM11;;chr13:73636252..73636307,+!p2@KLF5!0.76!5.58!KLF5;;chr1:24646263..24646277,+!p4@GRHL3!0.76!4.74!GRHL3;;chr5:134369973..134369984,-!p3@PITX1!0.76!4.74!PITX1;;chr6:1389989..1390019,+!p2@FOXF2!0.76!4.74!FOXF2;;chr6:28321971..28321995,-!p1@ZNF323!0.76!4.74!ZNF323;;chr1:164528410..164528428,+!p1@PBX1!0.75!38.48!PBX1;;chr2:70167296..70167306,+!p3@MXD1!0.75!7.39!MXD1;;chr20:18038521..18038571,-!p1@OVOL2!0.75!4.60!OVOL2;;chr13:73636621..73636647,+!p4@KLF5!0.75!4.60!KLF5;;chr13:41593425..41593480,-!p1@ELF1!0.74!31.37!ELF1;;chr3:138665969..138665993,-!p2@FOXL2!0.74!4.46!FOXL2;;chr3:189507523..189507535,+!p5@TP63!0.74!4.46!TP63;;chrX:24169518..24169522,+!p8@ZFX!0.74!4.46!ZFX;;chr17:80797863..80797874,-!p2@ZNF750!0.74!4.46!ZNF750;;chr1:24645865..24645871,+!p6@GRHL3!0.74!4.46!GRH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| |expression_enrichment_score=chr3:189507432..189507459,+!p1@TP63!2.46!290.42!TP63;;chr11:34642612..34642646,+!p1@EHF!2.25!178.18!EHF;;chr6:1312325..1312340,+!p1@FOXQ1!2.18!238.55!FOXQ1;;chr17:48072574..48072597,-!p1@DLX3!2.14!138.17!DLX3;;chr5:134369879..134369898,-!p2@PITX1!2.14!135.80!PITX1;;chr17:7493405..7493419,-!p1@SOX15!2.11!126.88!SOX15;;chr12:52445218..52445237,+!p1@NR4A1!2.09!1447.22!NR4A1;;chr14:37131058..37131139,+!p1@PAX9!2.06!113.63!PAX9;;chr12:54785054..54785072,-!p4@ZNF385A!2.04!120.88!ZNF385A;;chr1:201979743..201979762,+!p1@ELF3!1.97!91.74!ELF3;;chr5:134369905..134369972,-!p1@PITX1!1.94!129.25!PITX1;;chr17:80797886..80797906,-!p1@ZNF750!1.94!86.44!ZNF750;;chr12:54785074..54785122,-!p2@ZNF385A!1.86!107.50!ZNF385A;;chr1:209979467..209979494,-!p1@IRF6!1.85!77.38!IRF6;;chr17:26833339..26833378,+!p1@FOXN1!1.77!58.42!FOXN1;;chr10:64576105..64576133,-!p1@EGR2!1.76!111.68!EGR2;;chr1:6479968..6479986,-!p1@HES2!1.75!55.77!HES2;;chr9:100615499..100615519,+!p1@FOXE1!1.74!54.10!FOXE1;;chr13:73633131..73633149,+!p1@KLF5!1.71!510.57!KLF5;;chr1:201979703..201979721,+!p2@ELF3!1.67!46.01!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.67!46.01!HOPX;;chr1:209979411..209979433,-!p2@IRF6!1.65!43.36!IRF6;;chr20:55204351..55204377,+!p1@TFAP2C!1.64!53.68!TFAP2C;;chr2:176969228..176969260,+!p1@HOXD11!1.64!42.66!HOXD11;;chr1:24645921..24645973,+!p2@GRHL3!1.63!41.41!GRHL3;;chr2:176969179..176969226,+!p2@HOXD11!1.62!40.29!HOXD11;;chr1:24645832..24645853,+!p1@GRHL3!1.59!37.64!GRHL3;;chr11:65554528..65554546,+!p1@OVOL1!1.56!35.41!OVOL1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.54!33.32!ZBED1;;chr19:45971246..45971265,+!p1@FOSB!1.51!557.42!FOSB;;chr15:83953397..83953425,-!p1@BNC1!1.48!33.18!BNC1;;chr8:22550982..22550999,-!p1@EGR3!1.45!74.59!EGR3;;chr5:2751762..2751784,-!p1@IRX2!1.45!27.05!IRX2;;chr17:7492684..7492778,-!p2@SOX15!1.44!54.93!SOX15;;chr8:102504651..102504683,+!p1@GRHL2!1.43!26.21!GRHL2;;chr7:96654133..96654150,-!p1@DLX5!1.43!25.79!DLX5;;chr11:34642656..34642667,+!p2@EHF!1.42!25.24!EHF;;chr5:137804484..137804498,+!p2@EGR1!1.41!95.64!EGR1;;chr2:70142232..70142251,+!p1@MXD1!1.40!132.87!MXD1;;chr2:10091815..10091864,+!p1@GRHL1!1.40!31.79!GRHL1;;chr2:172967621..172967637,-!p1@DLX2!1.39!61.35!DLX2;;chr6:126240380..126240430,+!p2@NCOA7!1.38!57.86!NCOA7;;chr20:39317868..39317884,-!p1@MAFB!1.32!229.49!MAFB;;chr11:34645791..34645836,+!p3@EHF!1.32!19.66!EHF;;chr6:126240442..126240459,+!p4@NCOA7!1.31!24.96!NCOA7;;chr12:54332652..54332671,+!p2@HOXC13!1.31!19.24!HOXC13;;chr5:137801160..137801176,+!p1@EGR1!1.30!1817.39!EGR1;;chr11:65554563..65554576,+!p2@OVOL1!1.30!18.96!OVOL1;;chr6:10419768..10419819,-!p6@TFAP2A!1.30!18.82!TFAP2A;;chr6:19837592..19837621,+!p1@ID4!1.29!111.12!ID4;;chr7:101460882..101460923,+!p5@CUX1!1.29!18.68!CUX1;;chr22:19748231..19748317,+!p1@TBX1!1.29!18.68!TBX1;;chr5:174151612..174151633,+!p2@MSX2!1.25!16.87!MSX2;;chr12:53625966..53626012,-!p2@RARG!1.22!41.27!RARG;;chr17:26833250..26833262,+!p2@FOXN1!1.22!15.48!FOXN1;;chr5:174151553..174151610,+!p1@MSX2!1.21!25.10!MSX2;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.34!SOX7;;chr12:54332608..54332636,+!p1@HOXC13!1.20!14.92!HOXC13;;chr3:189507460..189507471,+!p3@TP63!1.19!14.64!TP63;;chr12:54332687..54332701,+!p3@HOXC13!1.17!13.94!HOXC13;;chr6:10415484..10415508,-!p3@TFAP2A!1.15!12.97!TFAP2A;;chr3:193853927..193853944,+!p1@HES1!1.13!404.75!HES1;;chr19:33865009..33865090,+!p3@CEBPG!1.13!16.73!CEBPG;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.41!HOXA9;;chr9:102584159..102584174,+!p2@NR4A3!1.12!22.03!NR4A3;;chr2:45236540..45236577,-!p1@SIX2!1.12!12.27!SIX2;;chr14:75745523..75745537,+!p1@FOS!1.11!1404.00!FOS;;chr9:110252035..110252057,-!p1@KLF4!1.11!191.01!KLF4;;chr4:57522166..57522260,-!p2@HOPX!1.11!13.66!HOPX;;chr11:129245526..129245553,+!p1@BARX2!1.09!11.43!BARX2;;chr11:2292226..2292270,-!p1@ASCL2!1.09!11.43!ASCL2;;chr1:24646002..24646013,+!p3@GRHL3!1.09!11.29!GRHL3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.08!97.46!PPP1R13L;;chr17:17726907..17726958,-!p2@SREBF1!1.07!67.76!SREBF1;;chr2:157189180..157189290,-!p1@NR4A2!1.07!56.61!NR4A2;;chr20:6748325..6748352,+!p1@BMP2!1.07!15.62!BMP2;;chr6:1389789..1389821,+!p1@FOXF2!1.07!14.92!FOXF2;;chr7:64838786..64838809,+!p2@ZNF92!1.06!60.37!ZNF92;;chr5:137804405..137804444,+!p3@EGR1!1.06!12.69!EGR1;;chr2:176969097..176969109,+!p3@HOXD11!1.06!10.60!HOXD11;;chr5:134369643..134369675,-!p4@PITX1!1.04!10.04!PITX1;;chr2:238592039..238592054,+!p4@LRRFIP1!1.04!9.90!LRRFIP1;;chr16:79634595..79634620,-!p2@MAF!1.03!17.85!MAF;;chrX:107018969..107019024,-!p6@TSC22D3!1.03!13.66!TSC22D3;;chr2:176969124..176969155,+!p5@HOXD11!1.03!9.76!HOXD11;;chr17:46687959..46688007,-!p2@HOXB7!1.02!13.25!HOXB7;;chr1:212782094..212782109,+!p1@ATF3!1.01!258.49!ATF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.00!11.01!TFAP2A;;chr19:12902289..12902307,+!p1@JUNB!0.99!2053.85!JUNB;;chr8:81787006..81787031,-!p2@ZNF704!0.96!8.09!ZNF704;;chr2:172949484..172949522,+!p1@DLX1!0.96!8.09!DLX1;;chr7:27205106..27205134,-!p2@HOXA9!0.95!7.95!HOXA9;;chr19:49139477..49139552,-!p4@DBP!0.94!10.04!DBP;;chr6:152128810..152128827,+!p2@ESR1!0.94!7.67!ESR1;;chr4:38665810..38665827,+!p1@KLF3!0.93!113.21!KLF3;;chr12:27485762..27485776,+!p3@ARNTL2!0.93!20.91!ARNTL2;;chr5:134369848..134369853,-!p6@PITX1!0.93!7.53!PITX1;;chr5:1887052..1887065,-!p2@IRX4!0.92!7.39!IRX4;;chr14:38064429..38064486,-!p1@FOXA1!0.92!7.39!FOXA1;;chr3:69915385..69915438,+!p3@MITF!0.92!7.39!MITF;;chr8:60031762..60031803,-!p3@TOX!0.91!10.60!TOX;;chr7:27224842..27224872,-!p1@HOXA11!0.91!7.11!HOXA11;;chr14:37132241..37132304,+!p3@PAX9!0.91!7.11!PAX9;;chr20:30193083..30193098,+!p1@ID1!0.90!592.97!ID1;;chr7:28448965..28448994,+!p2@CREB5!0.90!25.65!CREB5;;chr6:126240356..126240379,+!p7@NCOA7!0.90!8.64!NCOA7;;chr15:76629123..76629151,+!p1@ISL2!0.90!7.81!ISL2;;chr12:54348655..54348693,+!p1@HOXC12!0.90!6.97!HOXC12;;chr13:73636334..73636351,+!p6@KLF5!0.90!6.97!KLF5;;chr2:176994408..176994492,+!p1@HOXD8!0.89!6.83!HOXD8;;chr12:54332675..54332686,+!p4@HOXC13!0.89!6.69!HOXC13;;chr2:60780753..60780800,-!p1@BCL11A!0.88!34.02!BCL11A;;chr12:80084737..80084763,-!p3@PAWR!0.88!25.65!PAWR;;chr19:21324863..21324874,+!p2@ZNF431!0.88!11.99!ZNF431;;chr6:126240463..126240489,+!p6@NCOA7!0.88!7.53!NCOA7;;chr6:152126830..152126847,+!p4@ESR1!0.88!6.55!ESR1;;chr3:69915369..69915381,+!p4@MITF!0.88!6.55!MITF;;chr1:158979792..158979814,+!p2@IFI16!0.87!64.27!IFI16;;chr18:3449720..3449749,+!p2@TGIF1!0.87!14.22!TGIF1;;chr20:50721803..50721857,-!p2@ZFP64!0.87!10.46!ZFP64;;chr6:1312155..1312187,+!p2@FOXQ1!0.87!6.41!FOXQ1;;chr8:102504979..102505010,+!p2@GRHL2!0.87!6.41!GRHL2;;chr3:181429704..181429722,+!p1@SOX2!0.87!6.41!SOX2;;chr10:63661437..63661465,+!p2@ARID5B!0.86!127.29!ARID5B;;chr9:132427972..132428056,+!p1@PRRX2!0.86!8.37!PRRX2;;chr5:137804357..137804390,+!p4@EGR1!0.86!7.53!EGR1;;chr2:119605214..119605230,-!p1@EN1!0.86!6.27!EN1;;chr11:47236584..47236679,+!p1@DDB2!0.85!69.99!DDB2;;chr16:79634624..79634642,-!p1@MAF!0.85!25.51!MAF;;chr7:64254834..64254854,+!p2@ZNF138!0.85!11.43!ZNF138;;chr17:53342311..53342400,+!p1@HLF!0.85!7.11!HLF;;chr2:172950227..172950249,+!p2@DLX1!0.85!6.13!DLX1;;chr9:102584128..102584144,+!p3@NR4A3!0.84!11.71!NR4A3;;chr14:37051798..37051831,-!p1@NKX2-8!0.84!6.00!NKX2-8;;chr17:46703212..46703238,-!p2@HOXB9!0.84!5.86!HOXB9;;chr2:46524897..46524911,+!p2@EPAS1!0.83!16.87!EPAS1;;chr6:10413188..10413249,-!p7@TFAP2A!0.83!5.72!TFAP2A;;chr7:27239703..27239715,-!p1@HOXA13!0.83!5.72!HOXA13;;chr8:60031682..60031710,-!p2@TOX!0.82!9.34!TOX;;chr5:1887070..1887114,-!p1@IRX4!0.82!5.58!IRX4;;chr7:27239740..27239759,-!p2@HOXA13!0.82!5.58!HOXA13;;chr4:111544219..111544240,-!p1@PITX2!0.82!5.58!PITX2;;chr1:2461692..2461710,-!p1@HES5!0.82!5.58!HES5;;chr7:64254793..64254813,+!p1@ZNF138!0.81!67.34!ZNF138;;chr2:60780607..60780624,-!p2@BCL11A!0.81!17.85!BCL11A;;chr1:37940170..37940190,+!p1@ZC3H12A!0.80!71.25!ZC3H12A;;chr7:64126503..64126528,+!p1@ZNF107!0.80!40.99!ZNF107;;chr6:106534230..106534254,+!p2@PRDM1!0.80!14.08!PRDM1;;chr12:48298765..48298783,-!p2@VDR!0.80!11.57!VDR;;chr9:110251836..110251887,-!p4@KLF4!0.80!7.25!KLF4;;chr6:106546808..106546833,+!p3@PRDM1!0.80!6.83!PRDM1;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.27!MECOM;;chr5:137804130..137804156,+!p5@EGR1!0.80!5.72!EGR1;;chr3:138665937..138665968,-!p1@FOXL2!0.80!5.30!FOXL2;;chr1:10856639..10856662,-!p2@CASZ1!0.80!5.30!CASZ1;;chr11:16629261..16629284,-!p1@SOX6!0.80!5.30!SOX6;;chr12:54380036..54380091,+!p4@HOXC10!0.80!5.30!HOXC10;;chr17:46687935..46687950,-!p3@HOXB7!0.79!5.16!HOXB7;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.16!HOXA3;;chr7:64363638..64363667,+!p1@ZNF273!0.78!27.33!ZNF273;;chrX:131623044..131623089,-!p1@MBNL3!0.78!22.45!MBNL3;;chr12:52450298..52450331,+!p11@NR4A1!0.78!5.02!NR4A1;;chr3:141868293..141868355,-!p2@TFDP2!0.77!46.57!TFDP2;;chr7:64023441..64023462,-!p1@ZNF680!0.77!42.38!ZNF680;;chr9:102584262..102584276,+!p1@NR4A3!0.77!11.71!NR4A3;;chr16:54320675..54320715,-!p1@IRX3!0.77!11.29!IRX3;;chr6:28321909..28321965,-!p3@ZNF323!0.77!4.88!ZNF323;;chr7:114055245..114055258,+!p7@FOXP2!0.77!4.88!FOXP2;;chr7:27196267..27196311,-!p1@HOXA7!0.77!4.88!HOXA7;;chr1:10856665..10856683,-!p4@CASZ1!0.77!4.88!CASZ1;;chr4:81118647..81118666,+!p1@PRDM8!0.76!6.41!PRDM8;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.76!6.13!PRDM11;;chr13:73636252..73636307,+!p2@KLF5!0.76!5.58!KLF5;;chr1:24646263..24646277,+!p4@GRHL3!0.76!4.74!GRHL3;;chr5:134369973..134369984,-!p3@PITX1!0.76!4.74!PITX1;;chr6:1389989..1390019,+!p2@FOXF2!0.76!4.74!FOXF2;;chr6:28321971..28321995,-!p1@ZNF323!0.76!4.74!ZNF323;;chr1:164528410..164528428,+!p1@PBX1!0.75!38.48!PBX1;;chr2:70167296..70167306,+!p3@MXD1!0.75!7.39!MXD1;;chr20:18038521..18038571,-!p1@OVOL2!0.75!4.60!OVOL2;;chr13:73636621..73636647,+!p4@KLF5!0.75!4.60!KLF5;;chr13:41593425..41593480,-!p1@ELF1!0.74!31.37!ELF1;;chr3:138665969..138665993,-!p2@FOXL2!0.74!4.46!FOXL2;;chr3:189507523..189507535,+!p5@TP63!0.74!4.46!TP63;;chrX:24169518..24169522,+!p8@ZFX!0.74!4.46!ZFX;;chr17:80797863..80797874,-!p2@ZNF750!0.74!4.46!ZNF750;;chr1:24645865..24645871,+!p6@GRHL3!0.74!4.46!GRH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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006603,UBERON:0010316 | |||
|fonse_cell_line=FF:0101967 | |fonse_cell_line=FF:0101967 | ||
|fonse_cell_line_closure=FF:0101967 | |fonse_cell_line_closure=FF:0101967 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cervical%2520cancer%2520cell%2520line%253aME-180.CNhs11289.10553-107I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10553-107I4 | |id=FF:10553-107I4 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0101967 | |is_a=EFO:0002091;;FF:0000210;;FF:0101967 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11289 | |||
|library_id_phase_based=2:CNhs11289 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10553 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10553 | |||
|name=cervical cancer cell line:ME-180 | |name=cervical cancer cell line:ME-180 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11289,LSID759,release008,COMPLETED | |profile_hcage=CNhs11289,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=53.6088 | |rna_weight_ug=53.6088 | ||
|sample_age=66 | |sample_age=66 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2106 | |sample_cell_catalog=RCB2106 | ||
|sample_cell_line=ME-180 | |sample_cell_line=ME-180 | ||
| Line 79: | Line 100: | ||
|top_motifs=VSX1,2:2.84221101066;ZEB1:2.35880127654;TP53:2.35365917096;SNAI1..3:2.12188349556;FOXQ1:2.095845987;TBX4,5:2.00090094834;RBPJ:1.87405357493;NANOG:1.86637988822;PDX1:1.71635975708;FOXN1:1.63878702793;NKX2-1,4:1.57603927254;MYOD1:1.56363880008;TBP:1.55473303948;ADNP_IRX_SIX_ZHX:1.47997413472;ZNF148:1.42692526282;NKX2-3_NKX2-5:1.39870942617;ATF4:1.34101411585;TEF:1.31390731149;TFAP2{A,C}:1.25961153285;FOXM1:1.25931867685;ARID5B:1.18981364479;HOX{A4,D4}:1.18599564387;CDC5L:1.17619537822;NR6A1:1.17272236461;ONECUT1,2:1.13491747219;TFDP1:1.02777553589;SP1:0.978544036507;NKX6-1,2:0.972708765499;XCPE1{core}:0.961885330042;T:0.959346932738;E2F1..5:0.922178282121;LHX3,4:0.914949063303;TFCP2:0.907558938103;FOXL1:0.888433116828;NFY{A,B,C}:0.881286193852;LMO2:0.87529969995;ZNF423:0.870698129786;CRX:0.749783472512;GFI1B:0.722468217272;HOX{A6,A7,B6,B7}:0.719670952931;FOS_FOS{B,L1}_JUN{B,D}:0.697305092216;FOXP1:0.675649471364;ELK1,4_GABP{A,B1}:0.666133649829;GTF2A1,2:0.665157194626;ATF5_CREB3:0.646275189173;POU1F1:0.626090979699;FOXO1,3,4:0.625959773891;TEAD1:0.592096974281;HAND1,2:0.585157157339;ATF2:0.542060562191;CEBPA,B_DDIT3:0.49123974551;EGR1..3:0.475590083187;MED-1{core}:0.455070656732;NR5A1,2:0.43076794254;POU6F1:0.409220634779;bHLH_family:0.392319788612;JUN:0.386440394563;ZIC1..3:0.379810597377;SOX2:0.370637506739;LEF1_TCF7_TCF7L1,2:0.335550763342;CDX1,2,4:0.320369089559;IKZF1:0.319023874644;IRF7:0.314326001668;TAL1_TCF{3,4,12}:0.3100926026;EBF1:0.279637599243;PITX1..3:0.263423892414;GZF1:0.260561675202;PAX2:0.252860992984;FOX{I1,J2}:0.251880226804;HSF1,2:0.234511264157;MTE{core}:0.233980256176;HMX1:0.180069285581;NFE2:0.174061281177;BREu{core}:0.159812502473;HLF:0.152642210817;PAX4:0.146082615672;HIC1:0.145083850794;FOSL2:0.137449185171;MAZ:0.135090333087;SOX5:0.130411508592;ZNF143:0.129155361197;FOX{F1,F2,J1}:0.127259788757;FOX{D1,D2}:0.127137504186;ZBTB16:0.124482075664;NRF1:0.123299882304;NFIX:0.121648564483;PPARG:0.104333136155;NFIL3:0.0976861189363;AR:0.09517922852;OCT4_SOX2{dimer}:0.0847402058378;EN1,2:0.0840595318952;POU2F1..3:0.0674352550374;YY1:0.0601292325323;TOPORS:0.041992573321;ZNF384:0.0253965759474;FOXD3:0.0193685989956;POU5F1:0.0122872997047;ESR1:-0.00127173071768;ELF1,2,4:-0.0125973917744;PRRX1,2:-0.020973493354;SRF:-0.023013073071;BACH2:-0.036495946898;TGIF1:-0.0423473391047;ZBTB6:-0.0424942066085;BPTF:-0.0500163440394;PAX5:-0.0510988791847;GLI1..3:-0.0523182819862;MYBL2:-0.0550321561419;TFAP2B:-0.060718072347;GFI1:-0.0820308743676;TLX1..3_NFIC{dimer}:-0.0822409018827;RFX2..5_RFXANK_RFXAP:-0.0835660056157;SOX{8,9,10}:-0.0840498585033;ZFP161:-0.0886290723693;MEF2{A,B,C,D}:-0.090487578381;HNF1A:-0.0922289398448;PAX6:-0.13282444523;MAFB:-0.141689774568;CREB1:-0.161605554946;PBX1:-0.162681583455;HOXA9_MEIS1:-0.168733623044;RORA:-0.186932284435;REST:-0.193179248394;GTF2I:-0.205050122402;SOX17:-0.248620351662;KLF4:-0.25037074395;RFX1:-0.255718685553;FOXP3:-0.257337848868;NFE2L2:-0.275219603045;HBP1_HMGB_SSRP1_UBTF:-0.284941040257;TLX2:-0.286111257757;GCM1,2:-0.28880456167;PAX1,9:-0.295253636965;AIRE:-0.299506439577;HOX{A5,B5}:-0.300072726314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.346850856036;ZNF238:-0.356715865411;HNF4A_NR2F1,2:-0.372935130142;NFKB1_REL_RELA:-0.376704720799;MTF1:-0.388881417981;MYB:-0.392296627225;CUX2:-0.414186330362;EP300:-0.42608488492;IRF1,2:-0.431153367257;IKZF2:-0.460328581273;GATA6:-0.465590270546;PAX8:-0.484852965398;RREB1:-0.492261149124;MYFfamily:-0.498282022238;UFEwm:-0.517810223687;SMAD1..7,9:-0.520210524293;STAT5{A,B}:-0.534527832247;NR1H4:-0.548822157006;DBP:-0.55270968267;SPIB:-0.553618124073;SREBF1,2:-0.556651852502;NHLH1,2:-0.559133466845;NKX3-2:-0.592492063861;STAT1,3:-0.593575402149;ETS1,2:-0.620701452086;FOXA2:-0.622681707259;ESRRA:-0.633750403464;NKX2-2,8:-0.639208037701;HIF1A:-0.659955271272;AHR_ARNT_ARNT2:-0.665618440135;DMAP1_NCOR{1,2}_SMARC:-0.682456301795;EVI1:-0.712635068837;SPI1:-0.722775138853;NKX3-1:-0.727389812227;STAT2,4,6:-0.755660943737;NFE2L1:-0.78710620186;ALX4:-0.815312176092;RUNX1..3:-0.862152602661;PATZ1:-0.877870053377;RXR{A,B,G}:-0.884258211947;MZF1:-0.897708690076;PRDM1:-0.943915487563;GATA4:-0.964369976508;RXRA_VDR{dimer}:-0.968070452311;HES1:-0.978838138468;HMGA1,2:-0.982336720345;ALX1:-1.00856179343;ATF6:-1.08585154409;NR3C1:-1.15680050765;NFATC1..3:-1.22525546834;TFAP4:-1.26328974371;PAX3,7:-1.28084184954;XBP1:-1.32629854076;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.59801895605;POU3F1..4:-1.76825341356;NANOG{mouse}:-1.85752661982;SPZ1:-2.15875843252 | |top_motifs=VSX1,2:2.84221101066;ZEB1:2.35880127654;TP53:2.35365917096;SNAI1..3:2.12188349556;FOXQ1:2.095845987;TBX4,5:2.00090094834;RBPJ:1.87405357493;NANOG:1.86637988822;PDX1:1.71635975708;FOXN1:1.63878702793;NKX2-1,4:1.57603927254;MYOD1:1.56363880008;TBP:1.55473303948;ADNP_IRX_SIX_ZHX:1.47997413472;ZNF148:1.42692526282;NKX2-3_NKX2-5:1.39870942617;ATF4:1.34101411585;TEF:1.31390731149;TFAP2{A,C}:1.25961153285;FOXM1:1.25931867685;ARID5B:1.18981364479;HOX{A4,D4}:1.18599564387;CDC5L:1.17619537822;NR6A1:1.17272236461;ONECUT1,2:1.13491747219;TFDP1:1.02777553589;SP1:0.978544036507;NKX6-1,2:0.972708765499;XCPE1{core}:0.961885330042;T:0.959346932738;E2F1..5:0.922178282121;LHX3,4:0.914949063303;TFCP2:0.907558938103;FOXL1:0.888433116828;NFY{A,B,C}:0.881286193852;LMO2:0.87529969995;ZNF423:0.870698129786;CRX:0.749783472512;GFI1B:0.722468217272;HOX{A6,A7,B6,B7}:0.719670952931;FOS_FOS{B,L1}_JUN{B,D}:0.697305092216;FOXP1:0.675649471364;ELK1,4_GABP{A,B1}:0.666133649829;GTF2A1,2:0.665157194626;ATF5_CREB3:0.646275189173;POU1F1:0.626090979699;FOXO1,3,4:0.625959773891;TEAD1:0.592096974281;HAND1,2:0.585157157339;ATF2:0.542060562191;CEBPA,B_DDIT3:0.49123974551;EGR1..3:0.475590083187;MED-1{core}:0.455070656732;NR5A1,2:0.43076794254;POU6F1:0.409220634779;bHLH_family:0.392319788612;JUN:0.386440394563;ZIC1..3:0.379810597377;SOX2:0.370637506739;LEF1_TCF7_TCF7L1,2:0.335550763342;CDX1,2,4:0.320369089559;IKZF1:0.319023874644;IRF7:0.314326001668;TAL1_TCF{3,4,12}:0.3100926026;EBF1:0.279637599243;PITX1..3:0.263423892414;GZF1:0.260561675202;PAX2:0.252860992984;FOX{I1,J2}:0.251880226804;HSF1,2:0.234511264157;MTE{core}:0.233980256176;HMX1:0.180069285581;NFE2:0.174061281177;BREu{core}:0.159812502473;HLF:0.152642210817;PAX4:0.146082615672;HIC1:0.145083850794;FOSL2:0.137449185171;MAZ:0.135090333087;SOX5:0.130411508592;ZNF143:0.129155361197;FOX{F1,F2,J1}:0.127259788757;FOX{D1,D2}:0.127137504186;ZBTB16:0.124482075664;NRF1:0.123299882304;NFIX:0.121648564483;PPARG:0.104333136155;NFIL3:0.0976861189363;AR:0.09517922852;OCT4_SOX2{dimer}:0.0847402058378;EN1,2:0.0840595318952;POU2F1..3:0.0674352550374;YY1:0.0601292325323;TOPORS:0.041992573321;ZNF384:0.0253965759474;FOXD3:0.0193685989956;POU5F1:0.0122872997047;ESR1:-0.00127173071768;ELF1,2,4:-0.0125973917744;PRRX1,2:-0.020973493354;SRF:-0.023013073071;BACH2:-0.036495946898;TGIF1:-0.0423473391047;ZBTB6:-0.0424942066085;BPTF:-0.0500163440394;PAX5:-0.0510988791847;GLI1..3:-0.0523182819862;MYBL2:-0.0550321561419;TFAP2B:-0.060718072347;GFI1:-0.0820308743676;TLX1..3_NFIC{dimer}:-0.0822409018827;RFX2..5_RFXANK_RFXAP:-0.0835660056157;SOX{8,9,10}:-0.0840498585033;ZFP161:-0.0886290723693;MEF2{A,B,C,D}:-0.090487578381;HNF1A:-0.0922289398448;PAX6:-0.13282444523;MAFB:-0.141689774568;CREB1:-0.161605554946;PBX1:-0.162681583455;HOXA9_MEIS1:-0.168733623044;RORA:-0.186932284435;REST:-0.193179248394;GTF2I:-0.205050122402;SOX17:-0.248620351662;KLF4:-0.25037074395;RFX1:-0.255718685553;FOXP3:-0.257337848868;NFE2L2:-0.275219603045;HBP1_HMGB_SSRP1_UBTF:-0.284941040257;TLX2:-0.286111257757;GCM1,2:-0.28880456167;PAX1,9:-0.295253636965;AIRE:-0.299506439577;HOX{A5,B5}:-0.300072726314;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.346850856036;ZNF238:-0.356715865411;HNF4A_NR2F1,2:-0.372935130142;NFKB1_REL_RELA:-0.376704720799;MTF1:-0.388881417981;MYB:-0.392296627225;CUX2:-0.414186330362;EP300:-0.42608488492;IRF1,2:-0.431153367257;IKZF2:-0.460328581273;GATA6:-0.465590270546;PAX8:-0.484852965398;RREB1:-0.492261149124;MYFfamily:-0.498282022238;UFEwm:-0.517810223687;SMAD1..7,9:-0.520210524293;STAT5{A,B}:-0.534527832247;NR1H4:-0.548822157006;DBP:-0.55270968267;SPIB:-0.553618124073;SREBF1,2:-0.556651852502;NHLH1,2:-0.559133466845;NKX3-2:-0.592492063861;STAT1,3:-0.593575402149;ETS1,2:-0.620701452086;FOXA2:-0.622681707259;ESRRA:-0.633750403464;NKX2-2,8:-0.639208037701;HIF1A:-0.659955271272;AHR_ARNT_ARNT2:-0.665618440135;DMAP1_NCOR{1,2}_SMARC:-0.682456301795;EVI1:-0.712635068837;SPI1:-0.722775138853;NKX3-1:-0.727389812227;STAT2,4,6:-0.755660943737;NFE2L1:-0.78710620186;ALX4:-0.815312176092;RUNX1..3:-0.862152602661;PATZ1:-0.877870053377;RXR{A,B,G}:-0.884258211947;MZF1:-0.897708690076;PRDM1:-0.943915487563;GATA4:-0.964369976508;RXRA_VDR{dimer}:-0.968070452311;HES1:-0.978838138468;HMGA1,2:-0.982336720345;ALX1:-1.00856179343;ATF6:-1.08585154409;NR3C1:-1.15680050765;NFATC1..3:-1.22525546834;TFAP4:-1.26328974371;PAX3,7:-1.28084184954;XBP1:-1.32629854076;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.59801895605;POU3F1..4:-1.76825341356;NANOG{mouse}:-1.85752661982;SPZ1:-2.15875843252 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10553-107I4;search_select_hide=table117:FF:10553-107I4 | |||
}} | }} | ||
Latest revision as of 14:29, 3 June 2020
| Name: | cervical cancer cell line:ME-180 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11289 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11289
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11289
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.175 |
| 10 | 10 | 0.0482 |
| 100 | 100 | 0.934 |
| 101 | 101 | 0.765 |
| 102 | 102 | 0.374 |
| 103 | 103 | 0.0682 |
| 104 | 104 | 0.982 |
| 105 | 105 | 0.45 |
| 106 | 106 | 0.613 |
| 107 | 107 | 0.989 |
| 108 | 108 | 0.847 |
| 109 | 109 | 0.711 |
| 11 | 11 | 0.122 |
| 110 | 110 | 0.134 |
| 111 | 111 | 0.0269 |
| 112 | 112 | 0.315 |
| 113 | 113 | 0.118 |
| 114 | 114 | 0.018 |
| 115 | 115 | 0.295 |
| 116 | 116 | 0.121 |
| 117 | 117 | 0.153 |
| 118 | 118 | 0.0522 |
| 119 | 119 | 0.244 |
| 12 | 12 | 0.943 |
| 120 | 120 | 0.691 |
| 121 | 121 | 0.917 |
| 122 | 122 | 0.0585 |
| 123 | 123 | 0.58 |
| 124 | 124 | 0.211 |
| 125 | 125 | 0.268 |
| 126 | 126 | 0.733 |
| 127 | 127 | 0.266 |
| 128 | 128 | 0.137 |
| 129 | 129 | 0.826 |
| 13 | 13 | 0.721 |
| 130 | 130 | 0.205 |
| 131 | 131 | 0.344 |
| 132 | 132 | 0.237 |
| 133 | 133 | 0.177 |
| 134 | 134 | 0.424 |
| 135 | 135 | 0.215 |
| 136 | 136 | 0.0278 |
| 137 | 137 | 0.0753 |
| 138 | 138 | 0.582 |
| 139 | 139 | 0.0998 |
| 14 | 14 | 0.92 |
| 140 | 140 | 0.311 |
| 141 | 141 | 0.935 |
| 142 | 142 | 0.659 |
| 143 | 143 | 0.0747 |
| 144 | 144 | 0.13 |
| 145 | 145 | 0.512 |
| 146 | 146 | 0.194 |
| 147 | 147 | 0.875 |
| 148 | 148 | 0.103 |
| 149 | 149 | 0.125 |
| 15 | 15 | 0.123 |
| 150 | 150 | 0.952 |
| 151 | 151 | 0.495 |
| 152 | 152 | 0.793 |
| 153 | 153 | 0.452 |
| 154 | 154 | 0.928 |
| 155 | 155 | 0.581 |
| 156 | 156 | 0.54 |
| 157 | 157 | 0.83 |
| 158 | 158 | 0.287 |
| 159 | 159 | 0.47 |
| 16 | 16 | 0.973 |
| 160 | 160 | 0.142 |
| 161 | 161 | 0.979 |
| 162 | 162 | 0.93 |
| 163 | 163 | 0.601 |
| 164 | 164 | 0.121 |
| 165 | 165 | 0.328 |
| 166 | 166 | 0.203 |
| 167 | 167 | 0.87 |
| 168 | 168 | 0.905 |
| 169 | 169 | 0.112 |
| 17 | 17 | 0.9 |
| 18 | 18 | 0.13 |
| 19 | 19 | 0.0401 |
| 2 | 2 | 0.918 |
| 20 | 20 | 0.738 |
| 21 | 21 | 0.717 |
| 22 | 22 | 0.214 |
| 23 | 23 | 0.163 |
| 24 | 24 | 0.452 |
| 25 | 25 | 0.767 |
| 26 | 26 | 0.247 |
| 27 | 27 | 0.396 |
| 28 | 28 | 0.316 |
| 29 | 29 | 0.493 |
| 3 | 3 | 0.101 |
| 30 | 30 | 0.158 |
| 31 | 31 | 0.166 |
| 32 | 32 | 0.00837 |
| 33 | 33 | 0.455 |
| 34 | 34 | 0.0909 |
| 35 | 35 | 0.0401 |
| 36 | 36 | 0.068 |
| 37 | 37 | 0.238 |
| 38 | 38 | 0.841 |
| 39 | 39 | 0.909 |
| 4 | 4 | 0.641 |
| 40 | 40 | 0.842 |
| 41 | 41 | 0.275 |
| 42 | 42 | 0.785 |
| 43 | 43 | 0.0842 |
| 44 | 44 | 0.751 |
| 45 | 45 | 0.718 |
| 46 | 46 | 0.213 |
| 47 | 47 | 0.355 |
| 48 | 48 | 0.463 |
| 49 | 49 | 0.0579 |
| 5 | 5 | 0.515 |
| 50 | 50 | 0.872 |
| 51 | 51 | 0.185 |
| 52 | 52 | 0.348 |
| 53 | 53 | 0.75 |
| 54 | 54 | 0.604 |
| 55 | 55 | 0.438 |
| 56 | 56 | 0.892 |
| 57 | 57 | 0.885 |
| 58 | 58 | 0.831 |
| 59 | 59 | 0.184 |
| 6 | 6 | 0.755 |
| 60 | 60 | 0.785 |
| 61 | 61 | 0.866 |
| 62 | 62 | 0.25 |
| 63 | 63 | 0.964 |
| 64 | 64 | 0.369 |
| 65 | 65 | 0.223 |
| 66 | 66 | 0.0252 |
| 67 | 67 | 0.639 |
| 68 | 68 | 0.142 |
| 69 | 69 | 0.468 |
| 7 | 7 | 0.616 |
| 70 | 70 | 0.385 |
| 71 | 71 | 0.314 |
| 72 | 72 | 0.743 |
| 73 | 73 | 0.632 |
| 74 | 74 | 0.00547 |
| 75 | 75 | 0.596 |
| 76 | 76 | 0.468 |
| 77 | 77 | 0.212 |
| 78 | 78 | 0.239 |
| 79 | 79 | 0.00944 |
| 8 | 8 | 0.168 |
| 80 | 80 | 0.354 |
| 81 | 81 | 0.14 |
| 82 | 82 | 0.0103 |
| 83 | 83 | 0.717 |
| 84 | 84 | 0.926 |
| 85 | 85 | 0.161 |
| 86 | 86 | 0.446 |
| 87 | 87 | 0.106 |
| 88 | 88 | 0.875 |
| 89 | 89 | 0.714 |
| 9 | 9 | 0.147 |
| 90 | 90 | 0.239 |
| 91 | 91 | 0.0798 |
| 92 | 92 | 0.193 |
| 93 | 93 | 0.648 |
| 94 | 94 | 0.00655 |
| 95 | 95 | 0.172 |
| 96 | 96 | 0.0308 |
| 97 | 97 | 0.648 |
| 98 | 98 | 0.0877 |
| 99 | 99 | 0.996 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11289
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101967 cervical cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
120 (female reproductive organ cancer)
4362 (cervical cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000002 (uterine cervix)
0000995 (uterus)
0003134 (female reproductive organ)
0001560 (neck of organ)
0005156 (reproductive structure)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101967 (cervical cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)
