FF:10492-107B6: Difference between revisions

Latest revision as of 14:27, 3 June 2020

Name:	transitional-cell carcinoma cell line:JMSU1
Species:	Human (Homo sapiens)
Library ID:	CNhs11261
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bladder
dev stage	NA
sex	male
age	75
cell type	unclassifiable
cell line	JMSU1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005744

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11261		CAGE		DRX008029		DRR008901

Accession ID Hg19

Library id		BAM		CTSS
CNhs11261		DRZ000326		DRZ001711

Accession ID Hg38

Library id		BAM		CTSS
CNhs11261		DRZ011676		DRZ013061

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.159
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.519
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.044
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0125
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.044
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0351
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.044
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.152
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0132
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.22
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.084
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.084
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.044
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.46
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.119
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11261

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00658
MA0003.1	MA0003.1	0.27
MA0004.1	MA0004.1	0.0347
MA0006.1	MA0006.1	0.66
MA0007.1	MA0007.1	0.178
MA0009.1	MA0009.1	0.219
MA0014.1	MA0014.1	0.225
MA0017.1	MA0017.1	0.0315
MA0018.2	MA0018.2	0.764
MA0019.1	MA0019.1	0.125
MA0024.1	MA0024.1	6.5711e-5
MA0025.1	MA0025.1	0.985
MA0027.1	MA0027.1	0.621
MA0028.1	MA0028.1	0.0882
MA0029.1	MA0029.1	0.444
MA0030.1	MA0030.1	0.932
MA0031.1	MA0031.1	0.832
MA0035.2	MA0035.2	0.109
MA0038.1	MA0038.1	0.075
MA0039.2	MA0039.2	0.155
MA0040.1	MA0040.1	0.454
MA0041.1	MA0041.1	0.264
MA0042.1	MA0042.1	0.389
MA0043.1	MA0043.1	0.0931
MA0046.1	MA0046.1	0.0934
MA0047.2	MA0047.2	0.102
MA0048.1	MA0048.1	0.0358
MA0050.1	MA0050.1	0.00613
MA0051.1	MA0051.1	0.00688
MA0052.1	MA0052.1	0.396
MA0055.1	MA0055.1	0.0127
MA0057.1	MA0057.1	0.652
MA0058.1	MA0058.1	0.0129
MA0059.1	MA0059.1	0.0448
MA0060.1	MA0060.1	0.00501
MA0061.1	MA0061.1	0.762
MA0062.2	MA0062.2	0.408
MA0065.2	MA0065.2	0.993
MA0066.1	MA0066.1	0.368
MA0067.1	MA0067.1	0.642
MA0068.1	MA0068.1	0.336
MA0069.1	MA0069.1	0.585
MA0070.1	MA0070.1	0.208
MA0071.1	MA0071.1	0.785
MA0072.1	MA0072.1	0.28
MA0073.1	MA0073.1	0.936
MA0074.1	MA0074.1	0.731
MA0076.1	MA0076.1	0.194
MA0077.1	MA0077.1	0.978
MA0078.1	MA0078.1	0.1
MA0079.2	MA0079.2	0.686
MA0080.2	MA0080.2	1.13294e-9
MA0081.1	MA0081.1	0.147
MA0083.1	MA0083.1	0.316
MA0084.1	MA0084.1	0.862
MA0087.1	MA0087.1	0.33
MA0088.1	MA0088.1	0.325
MA0090.1	MA0090.1	0.297
MA0091.1	MA0091.1	0.00341
MA0092.1	MA0092.1	0.209
MA0093.1	MA0093.1	0.0132
MA0099.2	MA0099.2	0.232
MA0100.1	MA0100.1	0.0851
MA0101.1	MA0101.1	0.66
MA0102.2	MA0102.2	0.368
MA0103.1	MA0103.1	0.683
MA0104.2	MA0104.2	1.06785e-4
MA0105.1	MA0105.1	0.648
MA0106.1	MA0106.1	0.766
MA0107.1	MA0107.1	0.957
MA0108.2	MA0108.2	0.173
MA0111.1	MA0111.1	0.624
MA0112.2	MA0112.2	8.10839e-4
MA0113.1	MA0113.1	0.0177
MA0114.1	MA0114.1	0.999
MA0115.1	MA0115.1	0.656
MA0116.1	MA0116.1	0.159
MA0117.1	MA0117.1	0.315
MA0119.1	MA0119.1	0.466
MA0122.1	MA0122.1	0.942
MA0124.1	MA0124.1	0.907
MA0125.1	MA0125.1	0.65
MA0131.1	MA0131.1	0.644
MA0135.1	MA0135.1	0.0409
MA0136.1	MA0136.1	1.1118e-6
MA0137.2	MA0137.2	0.072
MA0138.2	MA0138.2	0.178
MA0139.1	MA0139.1	0.292
MA0140.1	MA0140.1	0.077
MA0141.1	MA0141.1	0.271
MA0142.1	MA0142.1	0.00735
MA0143.1	MA0143.1	0.124
MA0144.1	MA0144.1	0.139
MA0145.1	MA0145.1	0.0739
MA0146.1	MA0146.1	0.23
MA0147.1	MA0147.1	2.17053e-4
MA0148.1	MA0148.1	0.0773
MA0149.1	MA0149.1	0.376
MA0150.1	MA0150.1	0.333
MA0152.1	MA0152.1	0.562
MA0153.1	MA0153.1	0.982
MA0154.1	MA0154.1	0.053
MA0155.1	MA0155.1	0.254
MA0156.1	MA0156.1	0.00975
MA0157.1	MA0157.1	0.664
MA0159.1	MA0159.1	0.517
MA0160.1	MA0160.1	0.0767
MA0162.1	MA0162.1	0.784
MA0163.1	MA0163.1	0.47
MA0164.1	MA0164.1	0.933
MA0258.1	MA0258.1	0.0201
MA0259.1	MA0259.1	0.183

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11261

Novel motif	Logo	P-value
1	1	0.568
10	10	0.235
100	100	0.153
101	101	0.347
102	102	0.965
103	103	0.0161
104	104	0.757
105	105	0.874
106	106	0.00221
107	107	0.338
108	108	0.449
109	109	0.904
11	11	0.536
110	110	0.881
111	111	0.654
112	112	0.0185
113	113	0.0124
114	114	0.166
115	115	0.754
116	116	0.846
117	117	0.447
118	118	0.388
119	119	0.0886
12	12	0.799
120	120	0.394
121	121	0.224
122	122	0.591
123	123	0.911
124	124	0.134
125	125	0.928
126	126	0.736
127	127	0.303
128	128	0.0158
129	129	0.188
13	13	0.137
130	130	0.436
131	131	0.802
132	132	0.546
133	133	0.621
134	134	0.0751
135	135	0.00589
136	136	0.043
137	137	0.364
138	138	0.629
139	139	0.0483
14	14	0.39
140	140	0.0149
141	141	0.604
142	142	0.465
143	143	0.00573
144	144	0.255
145	145	0.377
146	146	0.149
147	147	0.941
148	148	0.156
149	149	0.0609
15	15	0.275
150	150	0.886
151	151	0.207
152	152	0.0522
153	153	0.568
154	154	0.954
155	155	0.46
156	156	0.734
157	157	0.8
158	158	0.164
159	159	0.25
16	16	0.521
160	160	0.476
161	161	0.845
162	162	0.586
163	163	0.168
164	164	0.152
165	165	0.193
166	166	0.285
167	167	0.88
168	168	0.584
169	169	0.0164
17	17	0.37
18	18	0.279
19	19	0.25
2	2	0.282
20	20	0.0352
21	21	0.053
22	22	0.0549
23	23	0.11
24	24	0.813
25	25	0.365
26	26	0.702
27	27	0.0282
28	28	0.385
29	29	0.418
3	3	0.678
30	30	0.583
31	31	0.132
32	32	0.0775
33	33	0.548
34	34	0.248
35	35	0.213
36	36	0.691
37	37	0.722
38	38	0.358
39	39	0.78
4	4	0.209
40	40	0.766
41	41	0.00183
42	42	0.756
43	43	0.176
44	44	0.575
45	45	0.122
46	46	0.0947
47	47	0.959
48	48	0.864
49	49	0.117
5	5	0.0395
50	50	0.506
51	51	0.363
52	52	0.203
53	53	0.517
54	54	0.306
55	55	0.0783
56	56	0.69
57	57	0.929
58	58	0.394
59	59	0.106
6	6	0.397
60	60	0.0496
61	61	0.353
62	62	0.129
63	63	0.865
64	64	0.612
65	65	0.149
66	66	0.417
67	67	0.605
68	68	0.323
69	69	0.109
7	7	0.451
70	70	0.113
71	71	0.833
72	72	0.483
73	73	0.19
74	74	0.796
75	75	0.484
76	76	0.674
77	77	0.338
78	78	0.694
79	79	0.0361
8	8	0.322
80	80	0.0724
81	81	0.339
82	82	0.00186
83	83	0.576
84	84	0.927
85	85	0.0057
86	86	0.571
87	87	0.219
88	88	0.992
89	89	0.00445
9	9	0.193
90	90	0.267
91	91	0.0336
92	92	0.151
93	93	0.541
94	94	0.0519
95	95	0.66
96	96	0.198
97	97	0.894
98	98	0.138
99	99	0.974

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11261

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102869 transitional cell carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000483 (epithelium)
0005910 (transitional epithelium)
0000479 (tissue)
0004119 (endoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0005911 (endo-epithelium)
0001062 (anatomical entity)
0000119 (cell layer)
0000486 (multilaminar epithelium)
0010317 (germ layer / neural crest derived structure)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0102869 (transitional cell carcinoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005744
+|accession_numbers=CAGE;DRX008029;DRR008901;DRZ000326;DRZ001711;DRZ011676;DRZ013061
 |ancestors_in_anatomy_facet=UBERON:0000483,UBERON:0005910,UBERON:0000479,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0005911,UBERON:0001062,UBERON:0000119,UBERON:0000486,UBERON:0010317
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:28034739..28034756,-!p1@MKX!1.91!80.37!MKX;;chr6:10412392..10412409,-!p4@TFAP2A!1.50!34.79!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.48!33.41!PPARG;;chr11:65668011..65668020,-!p3@FOSL1!1.47!28.60!FOSL1;;chr5:72744594..72744609,-!p1@FOXD1!1.44!117.40!FOXD1;;chr6:10412600..10412637,-!p1@TFAP2A!1.42!41.20!TFAP2A;;chr11:65667884..65667895,-!p2@FOSL1!1.34!78.87!FOSL1;;chr6:10415276..10415341,-!p2@TFAP2A!1.31!23.59!TFAP2A;;chr2:176969228..176969260,+!p1@HOXD11!1.31!19.32!HOXD11;;chr12:52445218..52445237,+!p1@NR4A1!1.30!231.28!NR4A1;;chr6:29648890..29648944,-!p1@ZFP57!1.29!18.36!ZFP57;;chr5:72744445..72744466,-!p2@FOXD1!1.26!28.50!FOXD1;;chr11:65667846..65667868,-!p1@FOSL1!1.22!405.14!FOSL1;;chr21:36421535..36421610,-!p2@RUNX1!1.16!48.35!RUNX1;;chr7:19157248..19157268,-!p1@TWIST1!1.06!29.56!TWIST1;;chr8:37553292..37553317,+!p1@ZNF703!1.03!233.41!ZNF703;;chr10:28032421..28032494,-!p2@MKX!1.03!9.61!MKX;;chr12:85673977..85674015,+!p1@ALX1!1.03!9.61!ALX1;;chr17:38020392..38020477,-!p1@IKZF3!1.00!9.07!IKZF3;;chr5:137804484..137804498,+!p2@EGR1!0.99!35.65!EGR1;;chr16:8962544..8962584,-!p2@CARHSP1!0.99!20.17!CARHSP1;;chr13:79177703..79177729,-!p2@POU4F1!0.98!8.64!POU4F1;;chr6:20402102..20402152,+!p1@E2F3!0.97!35.33!E2F3;;chr10:43134001..43134026,-!p1@ZNF33B!0.96!37.78!ZNF33B;;chr2:176969179..176969226,+!p2@HOXD11!0.94!7.68!HOXD11;;chr11:31832658..31832681,-!p1@PAX6!0.92!7.36!PAX6;;chr6:10412576..10412599,-!p5@TFAP2A!0.92!7.36!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!0.92!7.26!EHF;;chr2:176994408..176994492,+!p1@HOXD8!0.91!7.04!HOXD8;;chr8:128748308..128748324,+!p2@MYC!0.90!200.54!MYC;;chr1:212782094..212782109,+!p1@ATF3!0.90!196.70!ATF3;;chr8:77593474..77593612,+!p1@ZFHX4!0.88!29.56!ZFHX4;;chr8:106330656..106330684,+!p1@ZFPM2!0.88!18.04!ZFPM2;;chr19:45971246..45971265,+!p1@FOSB!0.86!123.80!FOSB;;chr10:28035133..28035148,-!p3@MKX!0.86!6.30!MKX;;chr2:157189180..157189290,-!p1@NR4A2!0.85!33.51!NR4A2;;chr6:20403826..20403886,+!p2@E2F3!0.85!31.80!E2F3;;chr6:126240442..126240459,+!p4@NCOA7!0.85!8.00!NCOA7;;chr8:128750654..128750793,+!p3@MYC!0.84!25.51!MYC;;chr9:102584159..102584174,+!p2@NR4A3!0.84!10.99!NR4A3;;chr3:169381420..169381535,-!p1@MECOM!0.84!7.04!MECOM;;chr3:147111198..147111225,+!p4@ZIC1!0.84!5.98!ZIC1;;chr21:38071430..38071456,+!p1@SIM2!0.84!5.98!SIM2;;chr1:201979703..201979721,+!p2@ELF3!0.84!5.87!ELF3;;chr6:126240380..126240430,+!p2@NCOA7!0.82!15.26!NCOA7;;chr16:8962202..8962222,-!p3@CARHSP1!0.82!10.46!CARHSP1;;chr5:72744562..72744573,-!p3@FOXD1!0.82!7.04!FOXD1;;chr7:27205136..27205164,-!p1@HOXA9!0.82!5.66!HOXA9;;chr6:34204921..34204939,+!p3@HMGA1!0.81!178.55!HMGA1;;chr8:77593448..77593471,+!p2@ZFHX4!0.81!5.44!ZFHX4;;chr8:37553261..37553282,+!p2@ZNF703!0.80!43.76!ZNF703;;chr6:20403727..20403769,+!p4@E2F3!0.80!13.66!E2F3;;chr12:3068466..3068495,+!p3@TEAD4!0.80!12.06!TEAD4;;chr5:72743793..72743855,-!p4@FOXD1!0.80!6.40!FOXD1;;chr6:126102292..126102329,+!p3@NCOA7!0.79!18.14!NCOA7;;chr15:76629123..76629151,+!p1@ISL2!0.79!5.76!ISL2;;chr17:46682321..46682362,-!p1@HOXB6!0.79!5.12!HOXB6;;chr1:59249688..59249703,-!p3@JUN!0.78!32.55!JUN;;chr14:61116183..61116208,-!p1@SIX1!0.78!20.60!SIX1;;chr9:132427972..132428056,+!p1@PRRX2!0.78!6.72!PRRX2;;chr9:100615499..100615519,+!p1@FOXE1!0.78!5.02!FOXE1;;chr16:8962853..8962878,-!p1@CARHSP1!0.77!317.94!CARHSP1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.77!24.33!TAL1;;chr10:43133950..43133994,-!p2@ZNF33B!0.77!19.10!ZNF33B;;chr15:83953397..83953425,-!p1@BNC1!0.77!5.76!BNC1;;chr3:141747459..141747475,-!p1@TFDP2!0.76!43.86!TFDP2;;chr17:7197911..7197964,-!p1@YBX2!0.76!4.80!YBX2;;chr7:27205106..27205134,-!p2@HOXA9!0.76!4.80!HOXA9;;chr1:161736038..161736056,+!p4@ATF6!0.75!11.53!ATF6;;chr19:54058073..54058088,+!p1@ZNF331!0.75!4.59!ZNF331;;chr15:41913690..41913753,+!p2@MGA!0.74!11.53!MGA;;chr3:168864315..168864339,-!p2@MECOM!0.74!7.79!MECOM;;chr6:10412477..10412490,-!p10@TFAP2A!0.74!4.48!TFAP2A;;chr1:45805872..45805900,+!p2@TOE1!0.73!11.53!TOE1;;chr19:54041669..54041697,+!p2@ZNF331!0.73!4.38!ZNF331;;chr17:41277372..41277418,-!p1@BRCA1!0.72!16.86!BRCA1;;chr3:141121847..141121868,+!p5@ZBTB38!0.72!6.83!ZBTB38;;chr21:38071403..38071428,+!p2@SIM2!0.72!4.27!SIM2;;chr10:104155480..104155534,+!p2@NFKB2!0.71!30.31!NFKB2;;chr6:20403916..20403965,+!p3@E2F3!0.71!20.49!E2F3;;chr12:27485762..27485776,+!p3@ARNTL2!0.71!12.06!ARNTL2;;chr17:46622205..46622218,-!p3@HOXB2!0.71!4.91!HOXB2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.71!4.16!HOXC5;;chr14:29235961..29236008,+!p1@FOXG1!0.71!4.16!FOXG1;;chr16:31085514..31085576,-!p1@ZNF668!0.70!18.46!ZNF668;;chr20:50721803..50721857,-!p2@ZFP64!0.70!6.62!ZFP64;;chr6:10415484..10415508,-!p3@TFAP2A!0.70!4.06!TFAP2A;;chr3:128206762..128206781,-!p2@GATA2!0.69!27.75!GATA2;;chr11:65687362..65687436,+!p3@DRAP1!0.69!20.17!DRAP1;;chr12:52448338..52448401,+!p7@NR4A1!0.69!3.84!NR4A1;;chr13:100623375..100623425,-!p1@ZIC5!0.69!3.84!ZIC5;;chr14:75745523..75745537,+!p1@FOS!0.68!521.58!FOS;;chr3:101568349..101568365,+!p1@NFKBIZ!0.68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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0101120
 |fonse_cell_line_closure=FF:0101120
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253aJMSU1.CNhs11261.10492-107B6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253aJMSU1.CNhs11261.10492-107B6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/transitional-cell%2520carcinoma%2520cell%2520line%253aJMSU1.CNhs11261.10492-107B6.hg38.nobarcode.bam
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 |id=FF:10492-107B6
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 |is_obsolete=
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10492
 |name=transitional-cell carcinoma cell line:JMSU1
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
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-|profile_rnaseq=,,,
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 |rna_box=107
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@@ Line 60: / Line 78: @@
 |rna_weight_ug=49.59375
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 |sample_cell_catalog=RCB2227
 |sample_cell_line=JMSU1
@@ Line 81: / Line 100: @@
 |top_motifs=HIF1A:2.07117755363;bHLH_family:1.97317584864;NKX2-1,4:1.83752597816;PITX1..3:1.82771282409;FOXQ1:1.75164944084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.48510085906;E2F1..5:1.35523424264;MYB:1.35090401408;AIRE:1.2301506833;NKX6-1,2:1.15225074608;NKX3-1:1.12627029136;ZNF384:1.03066465365;FOXP1:1.01862918748;PDX1:0.983695344002;NFY{A,B,C}:0.970026747997;PPARG:0.954037696546;CDX1,2,4:0.915563389541;NKX2-2,8:0.836745354092;BREu{core}:0.83660251887;ZBTB16:0.690066311784;HBP1_HMGB_SSRP1_UBTF:0.680354694868;ELK1,4_GABP{A,B1}:0.667500230729;CDC5L:0.663343933415;IRF7:0.652070474381;TFDP1:0.622429171331;NRF1:0.585096058815;AHR_ARNT_ARNT2:0.581653769529;GFI1:0.574599888878;PAX3,7:0.574170945224;TEF:0.573329043052;MYOD1:0.571201323198;ARID5B:0.569502080707;FOXA2:0.539427014254;EVI1:0.523840797813;YY1:0.502217115135;ZNF143:0.490673606529;LHX3,4:0.47750981808;TEAD1:0.474589759014;FOXD3:0.465765649662;PBX1:0.44861467548;SP1:0.447806016695;HOXA9_MEIS1:0.404675919759;TAL1_TCF{3,4,12}:0.403865776003;HOX{A4,D4}:0.397145901006;IRF1,2:0.370735909172;NKX3-2:0.353240007434;TBX4,5:0.344756583188;FOXM1:0.321628287897;STAT5{A,B}:0.314285277762;FOXN1:0.313370122308;HSF1,2:0.302180920538;ZFP161:0.29957883493;NFKB1_REL_RELA:0.285679045705;UFEwm:0.273126196484;ZIC1..3:0.269307266086;XBP1:0.254828065436;POU1F1:0.247427763311;ATF5_CREB3:0.240414972835;HES1:0.217238451479;PAX4:0.201419211644;RREB1:0.196491238022;NR6A1:0.192384447429;EN1,2:0.183192156321;POU3F1..4:0.178423237935;HNF4A_NR2F1,2:0.177347528903;CEBPA,B_DDIT3:0.174926981114;KLF4:0.170258052237;RFX1:0.147976477939;ADNP_IRX_SIX_ZHX:0.141767331015;SNAI1..3:0.134620629763;FOS_FOS{B,L1}_JUN{B,D}:0.134483709571;FOXL1:0.129140870356;RXRA_VDR{dimer}:0.125070005735;ZBTB6:0.115393715041;CUX2:0.107127425453;RBPJ:0.0925240537995;RXR{A,B,G}:0.0898039987668;GFI1B:0.0794786450709;ONECUT1,2:0.0792565074716;FOXO1,3,4:0.0643732485212;IKZF2:0.0583683968026;FOXP3:0.0546083304683;SREBF1,2:0.0371281495484;DMAP1_NCOR{1,2}_SMARC:0.0309271361938;MZF1:0.0259682231547;ATF4:0.000175594846128;EBF1:-0.00238297117965;GTF2A1,2:-0.00639818273022;TOPORS:-0.0127722961734;PAX8:-0.0247688347448;MTF1:-0.0280089635862;BPTF:-0.028594718048;FOX{D1,D2}:-0.0297108988283;BACH2:-0.0297622667543;TBP:-0.0366415741001;GATA4:-0.0440576478132;ZNF148:-0.049285665736;FOSL2:-0.0514971318227;NFE2:-0.0625489091837;TLX2:-0.0654779516967;STAT2,4,6:-0.0703873538637;HOX{A5,B5}:-0.0749198584648;HOX{A6,A7,B6,B7}:-0.0790566557842;LMO2:-0.0927152778947;EP300:-0.107962271245;T:-0.116067346583;TLX1..3_NFIC{dimer}:-0.130761324543;MEF2{A,B,C,D}:-0.136396319818;TFAP2{A,C}:-0.151973025786;HLF:-0.153271625392;RUNX1..3:-0.161733412249;DBP:-0.172041878855;POU5F1:-0.176797872444;NR3C1:-0.177775280255;CRX:-0.183590513012;PATZ1:-0.184996707509;CREB1:-0.187972163951;NR1H4:-0.202158969107;HNF1A:-0.218374043621;RFX2..5_RFXANK_RFXAP:-0.230789554531;MED-1{core}:-0.2351415792;ALX1:-0.237978732238;POU2F1..3:-0.24157097285;SOX17:-0.242212064653;FOX{I1,J2}:-0.246567636517;XCPE1{core}:-0.267332946895;MAZ:-0.271557268437;TFAP2B:-0.27961600147;ZEB1:-0.28085456009;ZNF423:-0.284332695714;PAX5:-0.289434227218;ALX4:-0.290224781166;HIC1:-0.291078025915;LEF1_TCF7_TCF7L1,2:-0.294457009238;POU6F1:-0.298980422259;RORA:-0.300833617994;GTF2I:-0.303226692338;ELF1,2,4:-0.304154768259;NFE2L2:-0.312925378004;PAX1,9:-0.315764980437;MYBL2:-0.318898333599;ATF2:-0.323320883926;GZF1:-0.32774959833;NKX2-3_NKX2-5:-0.33081842122;NFIX:-0.334663184373;SOX5:-0.335640677952;SRF:-0.339409536108;PRDM1:-0.35302336497;FOX{F1,F2,J1}:-0.365027646002;PRRX1,2:-0.365642073737;TP53:-0.368589731144;MYFfamily:-0.36886997195;REST:-0.381522529861;OCT4_SOX2{dimer}:-0.389859199863;MTE{core}:-0.396423092219;NR5A1,2:-0.411185165679;ATF6:-0.421438793875;ESR1:-0.439601203753;PAX6:-0.493752658875;PAX2:-0.495161462166;IKZF1:-0.498081838604;SPIB:-0.506587600494;ESRRA:-0.507492138385;NANOG:-0.510368513569;HMGA1,2:-0.526822199576;MAFB:-0.528391510211;GLI1..3:-0.586056105326;SPI1:-0.635907513;TFCP2:-0.641165789239;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.670048340134;STAT1,3:-0.67272905764;NHLH1,2:-0.679165606217;GATA6:-0.711256230414;SOX{8,9,10}:-0.720830922755;HAND1,2:-0.798129006678;ETS1,2:-0.845709791156;NFE2L1:-0.865229141237;NFATC1..3:-0.871611522362;VSX1,2:-0.8738693268;JUN:-0.901183481395;NFIL3:-1.05180094055;GCM1,2:-1.05255939261;EGR1..3:-1.06036560375;SOX2:-1.18058680782;AR:-1.18571007094;ZNF238:-1.20353697584;TFAP4:-1.22980667054;TGIF1:-1.32247842907;NANOG{mouse}:-1.38971323245;HMX1:-1.55180752939;SMAD1..7,9:-1.88379582268;SPZ1:-1.99815042805
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10492-107B6;search_select_hide=table117:FF:10492-107B6
 }}

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FF:10492-107B6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:27, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0