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{{f5samples
{{f5samples
|id=FF:10488-107B2
|DRA_sample_Accession=CAGE@SAMD00005788
|name=ductal cell carcinoma cell line:MIA Paca2, biol_rep1
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005788
|sample_id=10488
|accession_numbers=CAGE;DRX007869;DRR008741;DRZ000166;DRZ001551;DRZ011516;DRZ012901
|rna_tube_id=107B2
|accession_numbers_RNASeq=RNA-Seq;DRX057127;DRR062886;DRZ007962
|rna_box=107
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949
|rna_position=B2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000083,CL:0000255
|sample_cell_lot=
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:170,DOID:1793,DOID:4074,DOID:4905,DOID:3498
|sample_cell_catalog=RCB2094
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
|sample_company=RIKEN Bioresource centre
|comment=
|rna_lot_number=
|created_by=
|rna_catalog_number=
|creation_date=
|sample_species=Human (Homo sapiens)
|data_phase=2
|sample_strain=
|datafreeze_phase=2
|sample_dev_stage=
|def=
|sample_tissue=pancreas
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|sample_donor(cell lot)=
|ffid_belonging_in_development=CL:0000223
|sample_sex=male
|sample_age=65
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=2.03000
|rna_od260/280=2.07000
|sample_cell_type=duct cell
|sample_cell_line=MIA Paca2
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=ductal cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=53.62950
|rna_concentration=2.14518
|sample_note=
|profile_hcage=CNhs11259,LSID758,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000058,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000160,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001045,UBERON:0001048,UBERON:0001062,UBERON:0001264,UBERON:0001555,UBERON:0002050,UBERON:0002075,UBERON:0002100,UBERON:0002108,UBERON:0002114,UBERON:0002323,UBERON:0002532,UBERON:0002553,UBERON:0003104,UBERON:0003921,UBERON:0003922,UBERON:0003923,UBERON:0003924,UBERON:0003928,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004458,UBERON:0004921,UBERON:0005177,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0007329,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:162,DOID:170,DOID:1793,DOID:305,DOID:3498,DOID:4,DOID:4074,DOID:4905
|sample_description=
 
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 67: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg38.nobarcode.ctss.bed.gz
|id=FF:10488-107B2
|is_a=CL:0000083;;DOID:3498;;EFO:0002091;;FF:0000210;;FF:0100297
|is_obsolete=
|library_id=CNhs11259
|library_id_phase_based=2:CNhs11259
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10488
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10488
|name=ductal cell carcinoma cell line:MIA Paca2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11259,LSID758,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=107
|rna_catalog_number=
|rna_concentration=2.14518
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.03
|rna_od260/280=2.07
|rna_position=B2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=107B2
|rna_weight_ug=53.6295
|rnaseq_library_id=RDhi10070
|sample_age=65
|sample_category=cell lines
|sample_cell_catalog=RCB2094
|sample_cell_line=MIA Paca2
|sample_cell_lot=
|sample_cell_type=duct cell
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=ductal cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.03921307050276e-273!GO:0043231;intracellular membrane-bound organelle;2.43596052923788e-229!GO:0043227;membrane-bound organelle;2.49608345234526e-229!GO:0043226;organelle;2.4556335348866e-226!GO:0043229;intracellular organelle;1.24761223462914e-225!GO:0005737;cytoplasm;1.73177339657112e-194!GO:0044422;organelle part;8.45585961602448e-172!GO:0044446;intracellular organelle part;4.09918553880476e-170!GO:0044444;cytoplasmic part;2.23148816104671e-147!GO:0032991;macromolecular complex;3.49518779267895e-109!GO:0044237;cellular metabolic process;4.92782329717988e-100!GO:0044238;primary metabolic process;1.44551150841343e-99!GO:0030529;ribonucleoprotein complex;6.21534401468887e-94!GO:0044428;nuclear part;1.13396248480481e-91!GO:0043233;organelle lumen;2.43668902780821e-91!GO:0031974;membrane-enclosed lumen;2.43668902780821e-91!GO:0043170;macromolecule metabolic process;1.45877163107134e-90!GO:0005634;nucleus;1.45905219567436e-90!GO:0005739;mitochondrion;2.63827655116132e-84!GO:0003723;RNA binding;4.73557351539356e-83!GO:0006396;RNA processing;4.27002657108849e-62!GO:0005515;protein binding;1.54534943182875e-60!GO:0031090;organelle membrane;2.03194450821255e-57!GO:0043234;protein complex;1.15976436937754e-54!GO:0031981;nuclear lumen;1.29327625206224e-54!GO:0044429;mitochondrial part;1.33545645729841e-54!GO:0005840;ribosome;5.06015016010265e-53!GO:0006412;translation;1.63445695631174e-52!GO:0043283;biopolymer metabolic process;3.28893733502681e-52!GO:0031967;organelle envelope;2.35434913361736e-50!GO:0031975;envelope;3.03990161619827e-50!GO:0019538;protein metabolic process;1.03671938572173e-49!GO:0033036;macromolecule localization;2.6033018225703e-49!GO:0016043;cellular component organization and biogenesis;4.37306097731831e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.54894489004885e-48!GO:0015031;protein transport;7.93409929759221e-48!GO:0010467;gene expression;4.80135849720515e-47!GO:0003735;structural constituent of ribosome;1.28406600015219e-45!GO:0008104;protein localization;1.02267690558006e-44!GO:0045184;establishment of protein localization;2.23327021386767e-44!GO:0016071;mRNA metabolic process;3.51187693048249e-44!GO:0044260;cellular macromolecule metabolic process;1.04175723774193e-43!GO:0044267;cellular protein metabolic process;2.75891118448687e-43!GO:0044249;cellular biosynthetic process;6.22686438185758e-43!GO:0009058;biosynthetic process;3.78953946412072e-42!GO:0008380;RNA splicing;3.61228565624004e-41!GO:0033279;ribosomal subunit;2.03316269120794e-39!GO:0006397;mRNA processing;5.93503862084439e-39!GO:0006259;DNA metabolic process;1.65965061588831e-38!GO:0046907;intracellular transport;2.97479203730947e-38!GO:0005829;cytosol;9.76067338828409e-38!GO:0065003;macromolecular complex assembly;1.93118598338458e-37!GO:0043228;non-membrane-bound organelle;2.65442547072311e-37!GO:0043232;intracellular non-membrane-bound organelle;2.65442547072311e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.13032478038274e-37!GO:0009059;macromolecule biosynthetic process;7.24016376435246e-37!GO:0000166;nucleotide binding;1.09117330310018e-34!GO:0006996;organelle organization and biogenesis;1.10880727340169e-34!GO:0005740;mitochondrial envelope;6.4271547651557e-34!GO:0022607;cellular component assembly;5.32729803043363e-33!GO:0006886;intracellular protein transport;1.58150012828843e-32!GO:0003676;nucleic acid binding;2.53472329296656e-32!GO:0019866;organelle inner membrane;4.37137334159581e-32!GO:0031966;mitochondrial membrane;1.29295647980275e-31!GO:0005654;nucleoplasm;1.58625275370696e-31!GO:0005743;mitochondrial inner membrane;4.9980865640875e-30!GO:0005681;spliceosome;1.41778085221233e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.29275685406826e-27!GO:0051649;establishment of cellular localization;2.96401337798862e-26!GO:0017111;nucleoside-triphosphatase activity;3.57461992148285e-26!GO:0016462;pyrophosphatase activity;3.64505576434189e-26!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.83173785671016e-26!GO:0016817;hydrolase activity, acting on acid anhydrides;5.44677027030965e-26!GO:0051641;cellular localization;5.64641469074644e-26!GO:0031980;mitochondrial lumen;1.1253940643605e-25!GO:0005759;mitochondrial matrix;1.1253940643605e-25!GO:0007049;cell cycle;3.09889447078145e-25!GO:0044451;nucleoplasm part;4.06397933737555e-25!GO:0005730;nucleolus;4.06397933737555e-25!GO:0017076;purine nucleotide binding;9.15464357593285e-25!GO:0032553;ribonucleotide binding;3.18384713188244e-24!GO:0032555;purine ribonucleotide binding;3.18384713188244e-24!GO:0006974;response to DNA damage stimulus;1.5008179097596e-23!GO:0006119;oxidative phosphorylation;2.75231366182608e-23!GO:0012505;endomembrane system;6.63846540511408e-23!GO:0006457;protein folding;1.0008059642045e-22!GO:0016874;ligase activity;1.62468209874254e-22!GO:0044445;cytosolic part;2.71374455833169e-22!GO:0016070;RNA metabolic process;5.02726203912507e-22!GO:0015935;small ribosomal subunit;8.65722703912081e-21!GO:0006512;ubiquitin cycle;1.04578181302208e-20!GO:0044455;mitochondrial membrane part;1.24504081642271e-20!GO:0044265;cellular macromolecule catabolic process;1.24514409724267e-20!GO:0006281;DNA repair;1.42872317045502e-20!GO:0030554;adenyl nucleotide binding;6.49040585814586e-20!GO:0022618;protein-RNA complex assembly;6.91985793629556e-20!GO:0015934;large ribosomal subunit;1.08959856057625e-19!GO:0032559;adenyl ribonucleotide binding;1.60130776818741e-19!GO:0005524;ATP binding;2.04441562231766e-19!GO:0044248;cellular catabolic process;2.69715017395792e-19!GO:0043285;biopolymer catabolic process;1.7523201401319e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.7523201401319e-18!GO:0051186;cofactor metabolic process;2.41613719868259e-18!GO:0044257;cellular protein catabolic process;3.12105214739575e-18!GO:0019941;modification-dependent protein catabolic process;3.18638486590038e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.18638486590038e-18!GO:0005694;chromosome;4.04148086866412e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.94361243386124e-18!GO:0022402;cell cycle process;6.64534273347126e-18!GO:0009057;macromolecule catabolic process;6.67378484864224e-18!GO:0042254;ribosome biogenesis and assembly;6.9239030950654e-18!GO:0005783;endoplasmic reticulum;7.86145284870949e-18!GO:0008135;translation factor activity, nucleic acid binding;1.18959393417453e-17!GO:0016887;ATPase activity;1.61952260036276e-17!GO:0005635;nuclear envelope;7.78809124720773e-17!GO:0005746;mitochondrial respiratory chain;8.97784342882437e-17!GO:0000278;mitotic cell cycle;9.14268683869843e-17!GO:0048770;pigment granule;1.10459320693579e-16!GO:0042470;melanosome;1.10459320693579e-16!GO:0044432;endoplasmic reticulum part;1.57492482105581e-16!GO:0006260;DNA replication;1.76704322100585e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.76704322100585e-16!GO:0042623;ATPase activity, coupled;2.37691595893885e-16!GO:0005761;mitochondrial ribosome;2.47421417011326e-16!GO:0000313;organellar ribosome;2.47421417011326e-16!GO:0006605;protein targeting;2.87415448588154e-16!GO:0009719;response to endogenous stimulus;2.98530457663354e-16!GO:0031965;nuclear membrane;4.07750637299124e-16!GO:0030163;protein catabolic process;8.48852201979021e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.48219781193474e-15!GO:0006399;tRNA metabolic process;4.44626109738142e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.3893671083823e-15!GO:0003954;NADH dehydrogenase activity;5.3893671083823e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.3893671083823e-15!GO:0044453;nuclear membrane part;6.06084797127776e-15!GO:0044427;chromosomal part;6.41981174492208e-15!GO:0051082;unfolded protein binding;8.20825878544599e-15!GO:0051276;chromosome organization and biogenesis;1.40213926019977e-14!GO:0048193;Golgi vesicle transport;1.58426085036187e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.81511886723352e-14!GO:0000375;RNA splicing, via transesterification reactions;1.81511886723352e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.81511886723352e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.04382650133326e-14!GO:0006732;coenzyme metabolic process;4.24048427970759e-14!GO:0004386;helicase activity;5.47168110148314e-14!GO:0008134;transcription factor binding;5.63680588168041e-14!GO:0016192;vesicle-mediated transport;7.69608092724689e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.62261657710737e-13!GO:0042773;ATP synthesis coupled electron transport;1.62261657710737e-13!GO:0005794;Golgi apparatus;2.21260711540036e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.28753550069733e-13!GO:0043412;biopolymer modification;3.74943222573168e-13!GO:0016604;nuclear body;5.32151609174186e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.68447993978709e-13!GO:0045271;respiratory chain complex I;5.68447993978709e-13!GO:0005747;mitochondrial respiratory chain complex I;5.68447993978709e-13!GO:0000087;M phase of mitotic cell cycle;7.03544757372769e-13!GO:0003743;translation initiation factor activity;7.58697511433402e-13!GO:0005643;nuclear pore;9.13033107530775e-13!GO:0007067;mitosis;1.49874588023635e-12!GO:0022403;cell cycle phase;1.50135967696504e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.5312202346252e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.91289713325032e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.46565907084308e-12!GO:0006413;translational initiation;3.50232333198076e-12!GO:0006403;RNA localization;3.51536816425236e-12!GO:0008026;ATP-dependent helicase activity;3.71096888860322e-12!GO:0006364;rRNA processing;4.03479505380663e-12!GO:0050657;nucleic acid transport;4.74859449421399e-12!GO:0051236;establishment of RNA localization;4.74859449421399e-12!GO:0050658;RNA transport;4.74859449421399e-12!GO:0009259;ribonucleotide metabolic process;5.01785808676796e-12!GO:0065002;intracellular protein transport across a membrane;6.12886518818437e-12!GO:0005789;endoplasmic reticulum membrane;8.10038629152473e-12!GO:0016072;rRNA metabolic process;8.334620267844e-12!GO:0006163;purine nucleotide metabolic process;1.18720052190245e-11!GO:0006913;nucleocytoplasmic transport;1.22770295156053e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.25363923773958e-11!GO:0006461;protein complex assembly;1.27115582055835e-11!GO:0009056;catabolic process;1.46577450716537e-11!GO:0008565;protein transporter activity;1.59384328768121e-11!GO:0006446;regulation of translational initiation;1.64875377618218e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.6206221685834e-11!GO:0051169;nuclear transport;2.6598427994433e-11!GO:0006323;DNA packaging;3.9208205962123e-11!GO:0006464;protein modification process;7.09631889461568e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.78231661651268e-11!GO:0051301;cell division;8.80328382192294e-11!GO:0009055;electron carrier activity;9.74561289138515e-11!GO:0009150;purine ribonucleotide metabolic process;1.13761804306669e-10!GO:0006164;purine nucleotide biosynthetic process;1.17346676473627e-10!GO:0046930;pore complex;1.34560235856652e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.42565651667576e-10!GO:0004812;aminoacyl-tRNA ligase activity;1.42565651667576e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.42565651667576e-10!GO:0000279;M phase;1.5024016149867e-10!GO:0009260;ribonucleotide biosynthetic process;1.68346407509053e-10!GO:0016607;nuclear speck;1.69421000281717e-10!GO:0008639;small protein conjugating enzyme activity;2.19468987068048e-10!GO:0043038;amino acid activation;2.27880848306666e-10!GO:0006418;tRNA aminoacylation for protein translation;2.27880848306666e-10!GO:0043039;tRNA aminoacylation;2.27880848306666e-10!GO:0012501;programmed cell death;2.72902896684146e-10!GO:0043687;post-translational protein modification;3.56976174295731e-10!GO:0051028;mRNA transport;3.5812606762871e-10!GO:0006915;apoptosis;3.88486675649846e-10!GO:0004842;ubiquitin-protein ligase activity;4.20511283186484e-10!GO:0005768;endosome;5.98885154529066e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.19244119297161e-10!GO:0019787;small conjugating protein ligase activity;6.55291913842135e-10!GO:0009199;ribonucleoside triphosphate metabolic process;7.45450486988455e-10!GO:0051188;cofactor biosynthetic process;8.81715000099291e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.11169195491456e-09!GO:0009141;nucleoside triphosphate metabolic process;1.22684077730416e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.43825972635241e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.52318523040051e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.52318523040051e-09!GO:0065004;protein-DNA complex assembly;1.63562918896359e-09!GO:0051726;regulation of cell cycle;2.62786572102311e-09!GO:0008219;cell death;2.67827075818337e-09!GO:0016265;death;2.67827075818337e-09!GO:0009142;nucleoside triphosphate biosynthetic process;3.24438214838816e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.24438214838816e-09!GO:0015630;microtubule cytoskeleton;3.25621636441189e-09!GO:0016881;acid-amino acid ligase activity;3.58179687661059e-09!GO:0000074;regulation of progression through cell cycle;3.64978357424912e-09!GO:0015986;ATP synthesis coupled proton transport;4.06230550982027e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.06230550982027e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.45876550344147e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.77486460254634e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.77486460254634e-09!GO:0003712;transcription cofactor activity;7.22069063551762e-09!GO:0005793;ER-Golgi intermediate compartment;7.41995673791136e-09!GO:0006366;transcription from RNA polymerase II promoter;7.94778168817468e-09!GO:0015078;hydrogen ion transmembrane transporter activity;8.45545548972525e-09!GO:0017038;protein import;9.43678777688556e-09!GO:0006333;chromatin assembly or disassembly;9.71571244494666e-09!GO:0043566;structure-specific DNA binding;9.71571244494666e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.13823935897987e-08!GO:0009060;aerobic respiration;1.24427443145946e-08!GO:0046034;ATP metabolic process;1.38765835893522e-08!GO:0016779;nucleotidyltransferase activity;1.61281526689605e-08!GO:0019829;cation-transporting ATPase activity;1.67766559231018e-08!GO:0007005;mitochondrion organization and biogenesis;1.8733088518752e-08!GO:0016568;chromatin modification;2.25543539546804e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.749988401229e-08!GO:0016491;oxidoreductase activity;2.91700014891721e-08!GO:0006261;DNA-dependent DNA replication;3.26603932302318e-08!GO:0000785;chromatin;3.27370651638652e-08!GO:0016787;hydrolase activity;3.68535624550961e-08!GO:0006754;ATP biosynthetic process;5.1864096659463e-08!GO:0006753;nucleoside phosphate metabolic process;5.1864096659463e-08!GO:0045333;cellular respiration;6.79404489891733e-08!GO:0003697;single-stranded DNA binding;1.02489969674636e-07!GO:0009108;coenzyme biosynthetic process;1.41546190788856e-07!GO:0005667;transcription factor complex;1.75921109432075e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.79082608667911e-07!GO:0005773;vacuole;2.59512566039144e-07!GO:0016740;transferase activity;2.67900907392971e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.73787348677029e-07!GO:0043623;cellular protein complex assembly;2.78507882790934e-07!GO:0006752;group transfer coenzyme metabolic process;2.89715214516206e-07!GO:0000245;spliceosome assembly;2.91122601708919e-07!GO:0009117;nucleotide metabolic process;3.37190518415618e-07!GO:0006099;tricarboxylic acid cycle;3.99324652150906e-07!GO:0046356;acetyl-CoA catabolic process;3.99324652150906e-07!GO:0031988;membrane-bound vesicle;4.49826750383823e-07!GO:0006084;acetyl-CoA metabolic process;4.99089852909712e-07!GO:0016563;transcription activator activity;6.20545821760942e-07!GO:0051246;regulation of protein metabolic process;6.60995117534092e-07!GO:0032446;protein modification by small protein conjugation;6.77886067658542e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.91071408762652e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.41317834147608e-07!GO:0016567;protein ubiquitination;9.05828148228612e-07!GO:0030120;vesicle coat;1.01517622603684e-06!GO:0030662;coated vesicle membrane;1.01517622603684e-06!GO:0003924;GTPase activity;1.03264768957194e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.11935936108021e-06!GO:0051187;cofactor catabolic process;1.13009837923928e-06!GO:0048475;coated membrane;1.15485124453118e-06!GO:0030117;membrane coat;1.15485124453118e-06!GO:0045259;proton-transporting ATP synthase complex;1.15694598867745e-06!GO:0005788;endoplasmic reticulum lumen;1.1766218464137e-06!GO:0005525;GTP binding;1.18814017039895e-06!GO:0005813;centrosome;1.28268874469089e-06!GO:0042981;regulation of apoptosis;1.46854070685538e-06!GO:0008654;phospholipid biosynthetic process;1.55572437937336e-06!GO:0009109;coenzyme catabolic process;1.76817973061864e-06!GO:0044440;endosomal part;1.8463034388473e-06!GO:0010008;endosome membrane;1.8463034388473e-06!GO:0005815;microtubule organizing center;2.11391976436879e-06!GO:0043067;regulation of programmed cell death;2.12386874778059e-06!GO:0050794;regulation of cellular process;2.24055005978279e-06!GO:0000323;lytic vacuole;2.42185007365637e-06!GO:0005764;lysosome;2.42185007365637e-06!GO:0031982;vesicle;2.72456816490722e-06!GO:0008033;tRNA processing;2.83884523868868e-06!GO:0016853;isomerase activity;2.99594903032311e-06!GO:0005770;late endosome;3.32755951213122e-06!GO:0051170;nuclear import;3.60904207862439e-06!GO:0003724;RNA helicase activity;4.79974111675739e-06!GO:0051427;hormone receptor binding;4.80113995903704e-06!GO:0031410;cytoplasmic vesicle;4.85436393439923e-06!GO:0000151;ubiquitin ligase complex;5.89112114273928e-06!GO:0006091;generation of precursor metabolites and energy;6.03212863465406e-06!GO:0048523;negative regulation of cellular process;6.47043431988142e-06!GO:0003899;DNA-directed RNA polymerase activity;6.82091459239072e-06!GO:0044431;Golgi apparatus part;7.46015457494723e-06!GO:0031497;chromatin assembly;8.33280990750982e-06!GO:0006334;nucleosome assembly;8.6844513461057e-06!GO:0006606;protein import into nucleus;9.8871425316114e-06!GO:0043069;negative regulation of programmed cell death;1.02035641810749e-05!GO:0035257;nuclear hormone receptor binding;1.04600313737845e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.05426862940457e-05!GO:0043066;negative regulation of apoptosis;1.29157899694649e-05!GO:0000775;chromosome, pericentric region;1.43880271122118e-05!GO:0005798;Golgi-associated vesicle;1.51766940644853e-05!GO:0050662;coenzyme binding;1.56445115723061e-05!GO:0005762;mitochondrial large ribosomal subunit;1.64149857427319e-05!GO:0000315;organellar large ribosomal subunit;1.64149857427319e-05!GO:0016363;nuclear matrix;1.70718571692945e-05!GO:0006613;cotranslational protein targeting to membrane;1.76439722888591e-05!GO:0003713;transcription coactivator activity;1.82976136820105e-05!GO:0032561;guanyl ribonucleotide binding;1.85163574442516e-05!GO:0019001;guanyl nucleotide binding;1.85163574442516e-05!GO:0005819;spindle;2.0666814538203e-05!GO:0005657;replication fork;2.06873454787419e-05!GO:0044452;nucleolar part;2.69878474020191e-05!GO:0006916;anti-apoptosis;3.59650418296968e-05!GO:0003690;double-stranded DNA binding;3.64613563765304e-05!GO:0000314;organellar small ribosomal subunit;3.95874980733409e-05!GO:0005763;mitochondrial small ribosomal subunit;3.95874980733409e-05!GO:0048519;negative regulation of biological process;3.96343626743984e-05!GO:0019899;enzyme binding;3.98478925897845e-05!GO:0048037;cofactor binding;4.06688322522605e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.20038548413882e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.57402315358535e-05!GO:0015399;primary active transmembrane transporter activity;4.57402315358535e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.87012923070013e-05!GO:0004298;threonine endopeptidase activity;4.95251600010405e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.08910514800584e-05!GO:0045454;cell redox homeostasis;5.56915162214058e-05!GO:0008094;DNA-dependent ATPase activity;5.97833198683537e-05!GO:0051168;nuclear export;6.52511968603029e-05!GO:0051329;interphase of mitotic cell cycle;6.5283950987515e-05!GO:0006414;translational elongation;6.53267323019182e-05!GO:0006626;protein targeting to mitochondrion;6.58807424686382e-05!GO:0006612;protein targeting to membrane;7.05796709173339e-05!GO:0016859;cis-trans isomerase activity;7.50761232911166e-05!GO:0046483;heterocycle metabolic process;8.32416119047951e-05!GO:0000059;protein import into nucleus, docking;8.63379942417811e-05!GO:0006352;transcription initiation;8.71993586563611e-05!GO:0043021;ribonucleoprotein binding;9.37924189589937e-05!GO:0016741;transferase activity, transferring one-carbon groups;0.000104064947444739!GO:0006302;double-strand break repair;0.000113283103691015!GO:0003729;mRNA binding;0.0001193113564593!GO:0045786;negative regulation of progression through cell cycle;0.000134504260546275!GO:0008168;methyltransferase activity;0.000139149491366175!GO:0005048;signal sequence binding;0.000139149491366175!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000147996314175452!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000150500922884439!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000152721225276645!GO:0006310;DNA recombination;0.000175710036537175!GO:0051052;regulation of DNA metabolic process;0.000178087225122584!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000182176762190083!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000187423237981959!GO:0006793;phosphorus metabolic process;0.000190486871303262!GO:0006796;phosphate metabolic process;0.000190486871303262!GO:0048471;perinuclear region of cytoplasm;0.000190610593409825!GO:0000049;tRNA binding;0.000192005695273345!GO:0031968;organelle outer membrane;0.000204949749870445!GO:0008186;RNA-dependent ATPase activity;0.000209377757133407!GO:0051325;interphase;0.000211154967574189!GO:0019752;carboxylic acid metabolic process;0.000215301691603702!GO:0006082;organic acid metabolic process;0.000218477898909375!GO:0007051;spindle organization and biogenesis;0.000235043199043314!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000247259182546776!GO:0000075;cell cycle checkpoint;0.000274176854068734!GO:0019222;regulation of metabolic process;0.000274954985724126!GO:0033116;ER-Golgi intermediate compartment membrane;0.000330987042432434!GO:0019867;outer membrane;0.000338504538018158!GO:0003682;chromatin binding;0.000339497804081259!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000345115188583312!GO:0000139;Golgi membrane;0.000354312025631663!GO:0016564;transcription repressor activity;0.000360200979755197!GO:0031072;heat shock protein binding;0.000370326655327557!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0003759811155822!GO:0003678;DNA helicase activity;0.000376425907876839!GO:0009165;nucleotide biosynthetic process;0.000398135004244937!GO:0005769;early endosome;0.000398502120643675!GO:0050789;regulation of biological process;0.000398502120643675!GO:0046474;glycerophospholipid biosynthetic process;0.000401973817644664!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000409679336012229!GO:0009112;nucleobase metabolic process;0.000417673747077579!GO:0016251;general RNA polymerase II transcription factor activity;0.000421866597165333!GO:0016310;phosphorylation;0.000434830934169408!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000439754402056478!GO:0046489;phosphoinositide biosynthetic process;0.000479207878015109!GO:0006402;mRNA catabolic process;0.000495264146094482!GO:0006520;amino acid metabolic process;0.000496270226949818!GO:0006839;mitochondrial transport;0.00051326552869528!GO:0065009;regulation of a molecular function;0.000520495120312687!GO:0000096;sulfur amino acid metabolic process;0.000525399680949453!GO:0005885;Arp2/3 protein complex;0.000549144380435758!GO:0043681;protein import into mitochondrion;0.000556873114718028!GO:0004004;ATP-dependent RNA helicase activity;0.000588756734371984!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000601725606960535!GO:0005874;microtubule;0.000621334985107438!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000625961707534427!GO:0031252;leading edge;0.000628530856299317!GO:0032508;DNA duplex unwinding;0.000653104107698279!GO:0032392;DNA geometric change;0.000653104107698279!GO:0006383;transcription from RNA polymerase III promoter;0.000678931485769958!GO:0051789;response to protein stimulus;0.000698813134517779!GO:0006986;response to unfolded protein;0.000698813134517779!GO:0007006;mitochondrial membrane organization and biogenesis;0.000699935071435006!GO:0051920;peroxiredoxin activity;0.00072768483186066!GO:0043492;ATPase activity, coupled to movement of substances;0.000754717523993622!GO:0015992;proton transport;0.000772417281393556!GO:0005741;mitochondrial outer membrane;0.000822195892977726!GO:0006818;hydrogen transport;0.000843321735407497!GO:0009116;nucleoside metabolic process;0.000930521670730669!GO:0003684;damaged DNA binding;0.00101882434255462!GO:0006695;cholesterol biosynthetic process;0.00102009565199148!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00102485480314486!GO:0016126;sterol biosynthetic process;0.00115684949051558!GO:0003746;translation elongation factor activity;0.00117092963042987!GO:0006891;intra-Golgi vesicle-mediated transport;0.00117505007008361!GO:0006401;RNA catabolic process;0.00118050221807099!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00121451370751742!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00121451370751742!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00121451370751742!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00124545968999534!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00129589581758552!GO:0051087;chaperone binding;0.00141636514669929!GO:0000786;nucleosome;0.00145110101369422!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00146231775458647!GO:0031324;negative regulation of cellular metabolic process;0.00146231775458647!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00147444120115326!GO:0046467;membrane lipid biosynthetic process;0.00147444120115326!GO:0051540;metal cluster binding;0.00179860669246397!GO:0051536;iron-sulfur cluster binding;0.00179860669246397!GO:0009892;negative regulation of metabolic process;0.00180244184339138!GO:0005774;vacuolar membrane;0.0019040645348213!GO:0042802;identical protein binding;0.00196143372124054!GO:0044262;cellular carbohydrate metabolic process;0.00196307748637704!GO:0032200;telomere organization and biogenesis;0.00199377856495438!GO:0000723;telomere maintenance;0.00199377856495438!GO:0030880;RNA polymerase complex;0.00201562340241334!GO:0030133;transport vesicle;0.00215546263542953!GO:0051539;4 iron, 4 sulfur cluster binding;0.00215984276007217!GO:0000776;kinetochore;0.00221739553743007!GO:0006650;glycerophospholipid metabolic process;0.00222969883077114!GO:0016044;membrane organization and biogenesis;0.00228014185218154!GO:0006497;protein amino acid lipidation;0.00234966159124712!GO:0006268;DNA unwinding during replication;0.00239199134521247!GO:0022890;inorganic cation transmembrane transporter activity;0.00244772670196753!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00246967154614303!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00246967154614303!GO:0031970;organelle envelope lumen;0.0024959847723736!GO:0008652;amino acid biosynthetic process;0.0024959847723736!GO:0003714;transcription corepressor activity;0.00253040487608059!GO:0043284;biopolymer biosynthetic process;0.00253401346156384!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00255809621314105!GO:0006275;regulation of DNA replication;0.00261577051362662!GO:0006405;RNA export from nucleus;0.00269121333074549!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00269586465775767!GO:0015631;tubulin binding;0.00269873969787384!GO:0003711;transcription elongation regulator activity;0.0027052557322627!GO:0019843;rRNA binding;0.00287064721723333!GO:0005758;mitochondrial intermembrane space;0.00289739387220913!GO:0006289;nucleotide-excision repair;0.00290756342195097!GO:0045045;secretory pathway;0.00292953669372786!GO:0048500;signal recognition particle;0.00302564153636479!GO:0008139;nuclear localization sequence binding;0.00305406026879941!GO:0006505;GPI anchor metabolic process;0.00305652781221347!GO:0045941;positive regulation of transcription;0.00315776160078448!GO:0004518;nuclease activity;0.00334408929692365!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00345292211067228!GO:0051252;regulation of RNA metabolic process;0.00351098939643134!GO:0030663;COPI coated vesicle membrane;0.00351098939643134!GO:0030126;COPI vesicle coat;0.00351098939643134!GO:0051287;NAD binding;0.00358132471638398!GO:0031902;late endosome membrane;0.00358341011350985!GO:0030867;rough endoplasmic reticulum membrane;0.00379456345823102!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00379456345823102!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00379456345823102!GO:0015002;heme-copper terminal oxidase activity;0.00379456345823102!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00379456345823102!GO:0004129;cytochrome-c oxidase activity;0.00379456345823102!GO:0005905;coated pit;0.00385664317454907!GO:0009451;RNA modification;0.00393302944657499!GO:0009081;branched chain family amino acid metabolic process;0.00401190281106386!GO:0006740;NADPH regeneration;0.00403117685717257!GO:0006098;pentose-phosphate shunt;0.00403117685717257!GO:0008312;7S RNA binding;0.00408851500028018!GO:0007034;vacuolar transport;0.00408851500028018!GO:0007088;regulation of mitosis;0.00419214690967597!GO:0006506;GPI anchor biosynthetic process;0.00419214690967597!GO:0030137;COPI-coated vesicle;0.00419214690967597!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00419417923560292!GO:0000428;DNA-directed RNA polymerase complex;0.00419417923560292!GO:0008632;apoptotic program;0.00420847096861672!GO:0006144;purine base metabolic process;0.00426471177101168!GO:0044437;vacuolar part;0.0044583933500753!GO:0007040;lysosome organization and biogenesis;0.00465294045929753!GO:0007017;microtubule-based process;0.00475928112100115!GO:0035258;steroid hormone receptor binding;0.00482428166616121!GO:0007093;mitotic cell cycle checkpoint;0.00492302074462138!GO:0006611;protein export from nucleus;0.0050821011986127!GO:0005684;U2-dependent spliceosome;0.00523494506171403!GO:0006778;porphyrin metabolic process;0.00531120817186463!GO:0033013;tetrapyrrole metabolic process;0.00531120817186463!GO:0004527;exonuclease activity;0.00535424425430756!GO:0005637;nuclear inner membrane;0.00535424425430756!GO:0005669;transcription factor TFIID complex;0.00545852490565163!GO:0008234;cysteine-type peptidase activity;0.00551872672479765!GO:0030384;phosphoinositide metabolic process;0.00553587937607929!GO:0045893;positive regulation of transcription, DNA-dependent;0.00560285145675064!GO:0008022;protein C-terminus binding;0.00590472975542959!GO:0016197;endosome transport;0.00605552803034068!GO:0032259;methylation;0.00606224016694197!GO:0030132;clathrin coat of coated pit;0.00618633726502245!GO:0030118;clathrin coat;0.00618653587837927!GO:0007052;mitotic spindle organization and biogenesis;0.00626986322945416!GO:0005765;lysosomal membrane;0.00629494507939879!GO:0006284;base-excision repair;0.00637321988066637!GO:0016272;prefoldin complex;0.00649869548752055!GO:0000781;chromosome, telomeric region;0.0065972810966356!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00672541246838688!GO:0045047;protein targeting to ER;0.00672541246838688!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0068964756297249!GO:0046983;protein dimerization activity;0.00706529852113466!GO:0008180;signalosome;0.00712665535048186!GO:0006007;glucose catabolic process;0.0071937842545497!GO:0042158;lipoprotein biosynthetic process;0.0072163004651974!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0072163004651974!GO:0043022;ribosome binding;0.00730677648944894!GO:0031625;ubiquitin protein ligase binding;0.0073769444879191!GO:0030521;androgen receptor signaling pathway;0.0073769444879191!GO:0006672;ceramide metabolic process;0.00738076859250469!GO:0031124;mRNA 3'-end processing;0.00738076859250469!GO:0000097;sulfur amino acid biosynthetic process;0.00738076859250469!GO:0006519;amino acid and derivative metabolic process;0.00752439450773594!GO:0016407;acetyltransferase activity;0.00757776748445365!GO:0007021;tubulin folding;0.00760832772056955!GO:0043414;biopolymer methylation;0.00768707967947089!GO:0046112;nucleobase biosynthetic process;0.00797360664687044!GO:0000922;spindle pole;0.00799676150006384!GO:0006220;pyrimidine nucleotide metabolic process;0.00806923586638078!GO:0007264;small GTPase mediated signal transduction;0.00818662906512337!GO:0046966;thyroid hormone receptor binding;0.00819532115865677!GO:0030658;transport vesicle membrane;0.00819532115865677!GO:0006338;chromatin remodeling;0.00851748430698393!GO:0008017;microtubule binding;0.00861136148390788!GO:0046519;sphingoid metabolic process;0.00873243976374782!GO:0008637;apoptotic mitochondrial changes;0.00889714398879441!GO:0000792;heterochromatin;0.00908975740766489!GO:0000339;RNA cap binding;0.00913111356612541!GO:0007033;vacuole organization and biogenesis;0.00916097155492731!GO:0006509;membrane protein ectodomain proteolysis;0.00916097155492731!GO:0033619;membrane protein proteolysis;0.00916097155492731!GO:0007010;cytoskeleton organization and biogenesis;0.00938610575266504!GO:0005832;chaperonin-containing T-complex;0.00957196338712519!GO:0003756;protein disulfide isomerase activity;0.00962252020014386!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00962252020014386!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00963689061948531!GO:0007004;telomere maintenance via telomerase;0.00974242804768916!GO:0043488;regulation of mRNA stability;0.00981911576348619!GO:0043487;regulation of RNA stability;0.00981911576348619!GO:0006730;one-carbon compound metabolic process;0.0101898575393896!GO:0008610;lipid biosynthetic process;0.0102241761922142!GO:0043624;cellular protein complex disassembly;0.0103036162955748!GO:0006779;porphyrin biosynthetic process;0.0103036162955748!GO:0033014;tetrapyrrole biosynthetic process;0.0103036162955748!GO:0006376;mRNA splice site selection;0.0103036162955748!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0103036162955748!GO:0006400;tRNA modification;0.0103859481696396!GO:0048487;beta-tubulin binding;0.0105093747215242!GO:0012506;vesicle membrane;0.010538196018721!GO:0005876;spindle microtubule;0.0106737375475693!GO:0006807;nitrogen compound metabolic process;0.0107143376935364!GO:0030176;integral to endoplasmic reticulum membrane;0.0109013868545294!GO:0016584;nucleosome positioning;0.0110167977942312!GO:0016481;negative regulation of transcription;0.0110174487090123!GO:0006595;polyamine metabolic process;0.0118148621882099!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0118562660889733!GO:0006892;post-Golgi vesicle-mediated transport;0.0119003970530229!GO:0008408;3'-5' exonuclease activity;0.012114591744095!GO:0008415;acyltransferase activity;0.0122408871427841!GO:0031529;ruffle organization and biogenesis;0.01240085427925!GO:0006378;mRNA polyadenylation;0.0126356208884083!GO:0050790;regulation of catalytic activity;0.0126586072409442!GO:0000228;nuclear chromosome;0.0129268977801432!GO:0046128;purine ribonucleoside metabolic process;0.0129861267337356!GO:0042278;purine nucleoside metabolic process;0.0129861267337356!GO:0044433;cytoplasmic vesicle part;0.0129910109006874!GO:0035267;NuA4 histone acetyltransferase complex;0.0132983721651713!GO:0042168;heme metabolic process;0.0133027319605176!GO:0043189;H4/H2A histone acetyltransferase complex;0.013305667194463!GO:0030125;clathrin vesicle coat;0.0134621659419635!GO:0030665;clathrin coated vesicle membrane;0.0134621659419635!GO:0005777;peroxisome;0.0134687094153928!GO:0042579;microbody;0.0134687094153928!GO:0030660;Golgi-associated vesicle membrane;0.0136532451486145!GO:0009083;branched chain family amino acid catabolic process;0.0139788999568104!GO:0031323;regulation of cellular metabolic process;0.0142383596687371!GO:0030659;cytoplasmic vesicle membrane;0.0148612065336218!GO:0030119;AP-type membrane coat adaptor complex;0.0149927980682935!GO:0000209;protein polyubiquitination;0.0153774617394155!GO:0019783;small conjugating protein-specific protease activity;0.0153921015751094!GO:0007059;chromosome segregation;0.0154624712771776!GO:0030569;chymotrypsin inhibitor activity;0.0155659647120748!GO:0009308;amine metabolic process;0.0156088241576417!GO:0009303;rRNA transcription;0.0156088241576417!GO:0051098;regulation of binding;0.0156805933529615!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0161601919031522!GO:0017166;vinculin binding;0.0161764833502788!GO:0003702;RNA polymerase II transcription factor activity;0.0162444714412736!GO:0051128;regulation of cellular component organization and biogenesis;0.0164396100162296!GO:0009066;aspartate family amino acid metabolic process;0.0164826019325314!GO:0008097;5S rRNA binding;0.0165370333511116!GO:0048522;positive regulation of cellular process;0.016968873868081!GO:0006367;transcription initiation from RNA polymerase II promoter;0.017022375748099!GO:0030027;lamellipodium;0.0171344208314823!GO:0032984;macromolecular complex disassembly;0.0171605079355704!GO:0006360;transcription from RNA polymerase I promoter;0.0172486335990683!GO:0030134;ER to Golgi transport vesicle;0.0174638074829157!GO:0016790;thiolester hydrolase activity;0.0178600131878691!GO:0006739;NADP metabolic process;0.0180496318515155!GO:0048468;cell development;0.0180789978101927!GO:0042393;histone binding;0.0181985209918145!GO:0006350;transcription;0.018429723409557!GO:0004843;ubiquitin-specific protease activity;0.0184415545933051!GO:0000123;histone acetyltransferase complex;0.0185757372021865!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0191681456013974!GO:0008320;protein transmembrane transporter activity;0.0193056526480092!GO:0008250;oligosaccharyl transferase complex;0.0193161234661454!GO:0004674;protein serine/threonine kinase activity;0.0194870452210142!GO:0007050;cell cycle arrest;0.0195143346464531!GO:0043596;nuclear replication fork;0.0195863331910218!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0197995290996629!GO:0016408;C-acyltransferase activity;0.0202732310775816!GO:0016746;transferase activity, transferring acyl groups;0.020294408126432!GO:0043407;negative regulation of MAP kinase activity;0.0203834008480418!GO:0009070;serine family amino acid biosynthetic process;0.0204777311005585!GO:0042770;DNA damage response, signal transduction;0.02051031147493!GO:0008361;regulation of cell size;0.0207255415778619!GO:0000178;exosome (RNase complex);0.0209922448227435!GO:0007041;lysosomal transport;0.0209922448227435!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0212851703193617!GO:0000726;non-recombinational repair;0.0214324731309705!GO:0022884;macromolecule transmembrane transporter activity;0.0215359884949312!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0215359884949312!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0219305712433425!GO:0006278;RNA-dependent DNA replication;0.0220101813836103!GO:0030508;thiol-disulfide exchange intermediate activity;0.0223832130801358!GO:0004532;exoribonuclease activity;0.0226159334006688!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0226159334006688!GO:0030131;clathrin adaptor complex;0.0230861688454924!GO:0031123;RNA 3'-end processing;0.0237452089188018!GO:0003725;double-stranded RNA binding;0.0238295983906665!GO:0009067;aspartate family amino acid biosynthetic process;0.0239333310494544!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0240257249769388!GO:0004576;oligosaccharyl transferase activity;0.0240982985009802!GO:0000082;G1/S transition of mitotic cell cycle;0.0242789536610144!GO:0006643;membrane lipid metabolic process;0.0244989396707538!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0250634768261365!GO:0006118;electron transport;0.0252527166458075!GO:0043241;protein complex disassembly;0.025378241924477!GO:0009119;ribonucleoside metabolic process;0.0255481548923751!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0256358874149435!GO:0006783;heme biosynthetic process;0.0257452815117182!GO:0006458;'de novo' protein folding;0.0265312159251105!GO:0051084;'de novo' posttranslational protein folding;0.0265312159251105!GO:0030496;midbody;0.0267391457180745!GO:0006897;endocytosis;0.0268566489718711!GO:0010324;membrane invagination;0.0268566489718711!GO:0004300;enoyl-CoA hydratase activity;0.0271442957632326!GO:0009124;nucleoside monophosphate biosynthetic process;0.0275718744404799!GO:0009123;nucleoside monophosphate metabolic process;0.0275718744404799!GO:0005791;rough endoplasmic reticulum;0.0276892449146977!GO:0008538;proteasome activator activity;0.028371719506827!GO:0051101;regulation of DNA binding;0.028513099232466!GO:0004221;ubiquitin thiolesterase activity;0.0286175066834018!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0287832287534258!GO:0032940;secretion by cell;0.0304601331321243!GO:0008276;protein methyltransferase activity;0.0307424492883648!GO:0040029;regulation of gene expression, epigenetic;0.0310885163274121!GO:0033673;negative regulation of kinase activity;0.0319453418576353!GO:0006469;negative regulation of protein kinase activity;0.0319453418576353!GO:0065007;biological regulation;0.0321654625906878!GO:0051348;negative regulation of transferase activity;0.032685260213541!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0339653644052374!GO:0010257;NADH dehydrogenase complex assembly;0.0339653644052374!GO:0033108;mitochondrial respiratory chain complex assembly;0.0339653644052374!GO:0046365;monosaccharide catabolic process;0.0346402595717213!GO:0005784;translocon complex;0.0357468086047719!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0360370312296525!GO:0050681;androgen receptor binding;0.0360623446783835!GO:0018196;peptidyl-asparagine modification;0.0362532765528136!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0362532765528136!GO:0022406;membrane docking;0.0377736487578843!GO:0048278;vesicle docking;0.0377736487578843!GO:0022411;cellular component disassembly;0.0377950534212621!GO:0006564;L-serine biosynthetic process;0.0377950534212621!GO:0051053;negative regulation of DNA metabolic process;0.0380837025427497!GO:0046164;alcohol catabolic process;0.038129722472!GO:0030518;steroid hormone receptor signaling pathway;0.0381543697964437!GO:0006950;response to stress;0.0383510703901244!GO:0030127;COPII vesicle coat;0.0391171162228524!GO:0012507;ER to Golgi transport vesicle membrane;0.0391171162228524!GO:0005732;small nucleolar ribonucleoprotein complex;0.0393228177464698!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0394352220617981!GO:0046982;protein heterodimerization activity;0.0394509299373565!GO:0004003;ATP-dependent DNA helicase activity;0.0395893139443861!GO:0000725;recombinational repair;0.0410164485802429!GO:0000724;double-strand break repair via homologous recombination;0.0410164485802429!GO:0030433;ER-associated protein catabolic process;0.0410218105292822!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0410218105292822!GO:0005869;dynactin complex;0.0418302306469701!GO:0004563;beta-N-acetylhexosaminidase activity;0.0421441312377553!GO:0017134;fibroblast growth factor binding;0.0428239082621697!GO:0031461;cullin-RING ubiquitin ligase complex;0.0428826053974797!GO:0000152;nuclear ubiquitin ligase complex;0.0428891643489284!GO:0009161;ribonucleoside monophosphate metabolic process;0.043189063846926!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.043189063846926!GO:0042982;amyloid precursor protein metabolic process;0.043189063846926!GO:0000287;magnesium ion binding;0.0439898131965862!GO:0016860;intramolecular oxidoreductase activity;0.0439898131965862!GO:0031570;DNA integrity checkpoint;0.0440334958849686!GO:0016049;cell growth;0.0441410131836997!GO:0006417;regulation of translation;0.044454695984257!GO:0005663;DNA replication factor C complex;0.0449871322262222!GO:0006635;fatty acid beta-oxidation;0.0450118637686529!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0456138408558644!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0456138408558644!GO:0006563;L-serine metabolic process;0.0456565034831573!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0458952089444169!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0459220739981699!GO:0031371;ubiquitin conjugating enzyme complex;0.0460436270084694!GO:0004680;casein kinase activity;0.0461871559929938!GO:0006644;phospholipid metabolic process;0.0465408828010498!GO:0019377;glycolipid catabolic process;0.0465955768540989!GO:0000118;histone deacetylase complex;0.0466357007361833!GO:0051881;regulation of mitochondrial membrane potential;0.0466609897262733!GO:0006749;glutathione metabolic process;0.0472269688418416!GO:0042026;protein refolding;0.0476150959734449!GO:0044450;microtubule organizing center part;0.0478903006438978!GO:0001726;ruffle;0.048558058364199!GO:0006914;autophagy;0.0491850810934178
|sample_id=10488
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=pancreas
|top_motifs=HOX{A6,A7,B6,B7}:1.95190508295;ELK1,4_GABP{A,B1}:1.43745812398;NRF1:1.43042669984;bHLH_family:1.33002134819;PITX1..3:1.21246977674;PPARG:1.11175751849;FOXD3:1.10164209458;PBX1:0.988853923558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.905734967422;YY1:0.880255494594;ZNF143:0.778000029843;ONECUT1,2:0.728395637961;NKX6-1,2:0.721555067605;SREBF1,2:0.713519947055;FOXQ1:0.652507201094;FOXP1:0.640628212929;TEF:0.60437322177;LHX3,4:0.603547746772;STAT5{A,B}:0.539210236446;RORA:0.499462181835;MYB:0.488793251069;CRX:0.47212911601;NKX2-1,4:0.457700081194;RFX1:0.456334078834;E2F1..5:0.439614829376;ZBTB16:0.420733060306;AIRE:0.413416246442;RFX2..5_RFXANK_RFXAP:0.383590738242;EN1,2:0.372741901738;FOXA2:0.371995849603;TOPORS:0.34308099473;TFDP1:0.310256167829;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.296279485556;CEBPA,B_DDIT3:0.284561227782;HOX{A4,D4}:0.268363255287;HOX{A5,B5}:0.266848022714;CDX1,2,4:0.257069112683;RXR{A,B,G}:0.243747811355;CREB1:0.216511164224;POU1F1:0.215697056521;PAX8:0.206548341016;PAX5:0.20422031138;PRRX1,2:0.196318571926;REST:0.189995760127;ATF5_CREB3:0.164156070186;PAX1,9:0.162866237016;DMAP1_NCOR{1,2}_SMARC:0.154776284353;ZBTB6:0.126249233703;LEF1_TCF7_TCF7L1,2:0.115730730754;BPTF:0.113727371019;ELF1,2,4:0.0977711959673;OCT4_SOX2{dimer}:0.0908572882433;NANOG:0.0874576699582;PDX1:0.0770210758844;RBPJ:0.0752712642143;NKX2-3_NKX2-5:0.0738954331139;NR3C1:0.072914188769;GFI1:0.0703917086256;GATA4:0.0694086526247;ATF4:0.0611522382018;HNF4A_NR2F1,2:0.055288639731;FOXN1:0.0481342304081;SNAI1..3:0.0475720919016;ARID5B:0.0450828294579;NFE2L1:0.0405708947188;EGR1..3:0.0396570477925;LMO2:0.0198883397353;RXRA_VDR{dimer}:0.015156641112;NR6A1:-0.0175407983295;UFEwm:-0.0192128162991;PAX4:-0.0201156409444;FOX{I1,J2}:-0.0210819482061;MTF1:-0.0262992360147;TP53:-0.0381812829799;ZNF384:-0.0420734141973;CDC5L:-0.0443758417946;NKX3-2:-0.0458914593157;ALX4:-0.0569181066917;HIF1A:-0.073039268279;FOS_FOS{B,L1}_JUN{B,D}:-0.0752420164684;ZIC1..3:-0.0835152755993;NFE2:-0.0883040148602;TEAD1:-0.0986147455309;EVI1:-0.0993101750106;NFY{A,B,C}:-0.107534630872;BACH2:-0.110176201911;SRF:-0.145351668722;FOXO1,3,4:-0.152872004738;SP1:-0.15370527716;FOXM1:-0.156052274037;FOX{D1,D2}:-0.160998640529;IKZF2:-0.162908895909;GLI1..3:-0.169575302371;GTF2A1,2:-0.175083808981;HLF:-0.183592885718;ALX1:-0.183608130057;HSF1,2:-0.196125634033;RREB1:-0.19723007641;ADNP_IRX_SIX_ZHX:-0.197700946792;HES1:-0.200078695987;HOXA9_MEIS1:-0.208097596641;SOX{8,9,10}:-0.210344613627;POU2F1..3:-0.218655308722;ESRRA:-0.220465974501;PAX2:-0.226714025074;XCPE1{core}:-0.228844855459;MED-1{core}:-0.231260626191;KLF4:-0.235362905212;FOSL2:-0.239995209663;AHR_ARNT_ARNT2:-0.247517540055;NR5A1,2:-0.252740621095;NFIL3:-0.288916366172;HNF1A:-0.301595533014;ZFP161:-0.302924775322;ZEB1:-0.30402223873;TFCP2:-0.312181028578;NHLH1,2:-0.327267774097;MYOD1:-0.339616550642;NFKB1_REL_RELA:-0.346652429819;GATA6:-0.364943256839;FOXL1:-0.366067162061;MEF2{A,B,C,D}:-0.389379684777;ZNF148:-0.398149380225;SOX17:-0.400025047347;JUN:-0.409242614607;STAT1,3:-0.426999243493;MYBL2:-0.430162016314;SPIB:-0.439143524421;DBP:-0.444989438183;BREu{core}:-0.453244304481;NKX2-2,8:-0.462466543706;STAT2,4,6:-0.46253237816;CUX2:-0.481405018108;FOXP3:-0.491839647417;SPI1:-0.505386849186;PAX3,7:-0.513926086134;MAFB:-0.522085361877;RUNX1..3:-0.522768418116;IRF1,2:-0.52785726653;SOX5:-0.534201916919;NFATC1..3:-0.535906640757;HIC1:-0.537142805971;NFE2L2:-0.560518282404;POU5F1:-0.5648185033;HBP1_HMGB_SSRP1_UBTF:-0.57228598043;NR1H4:-0.575276371989;NKX3-1:-0.585776981288;TFAP2B:-0.591606693235;VSX1,2:-0.592742315459;ESR1:-0.598436156957;GTF2I:-0.605795003527;IRF7:-0.609913021594;PRDM1:-0.613510440418;EBF1:-0.614827362667;POU6F1:-0.635197040351;T:-0.656014676658;NANOG{mouse}:-0.660927810196;SOX2:-0.6741383661;HMGA1,2:-0.685999096234;GZF1:-0.686015736194;GFI1B:-0.691369175407;HAND1,2:-0.712768919647;AR:-0.720809101372;ETS1,2:-0.730591322906;PAX6:-0.737769276748;FOX{F1,F2,J1}:-0.739385528775;TFAP2{A,C}:-0.776583815252;PATZ1:-0.794987599567;IKZF1:-0.801330877386;TAL1_TCF{3,4,12}:-0.830768486456;TLX1..3_NFIC{dimer}:-0.848639077556;XBP1:-0.854056022103;POU3F1..4:-0.862261223993;MAZ:-0.876658550666;ZNF423:-0.87941809687;EP300:-0.921264718206;MYFfamily:-0.933585347607;MZF1:-0.94924204687;ATF2:-0.982712829714;NFIX:-1.00000149187;MTE{core}:-1.00406899633;ATF6:-1.0338715383;TGIF1:-1.05762484408;GCM1,2:-1.11835964182;TBP:-1.19308652112;TLX2:-1.25465614514;TBX4,5:-1.34536184529;TFAP4:-1.50414622116;SMAD1..7,9:-1.63733549201;HMX1:-1.69999670986;SPZ1:-1.97576457056;ZNF238:-2.45630865447
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10488-107B2;search_select_hide=table117:FF:10488-107B2
}}
}}

Latest revision as of 14:26, 3 June 2020

Name:ductal cell carcinoma cell line:MIA Paca2
Species:Human (Homo sapiens)
Library ID:CNhs11259
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepancreas
dev stageNA
sexmale
age65
cell typeduct cell
cell lineMIA Paca2
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005788
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11259 CAGE DRX007869 DRR008741
Accession ID Hg19

Library idBAMCTSS
CNhs11259 DRZ000166 DRZ001551
Accession ID Hg38

Library idBAMCTSS
CNhs11259 DRZ011516 DRZ012901
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005788
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10070 RNA-Seq DRX057127 DRR062886
Accession ID Hg19

Library idBAMCTSS
RDhi10070 DRZ007962


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.238
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.24
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0187
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.132
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.194
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.197
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal1.119
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0728
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0944
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0186
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.151
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0944
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11259

Jaspar motifP-value
MA0002.20.00856
MA0003.10.0737
MA0004.10.1
MA0006.10.752
MA0007.10.816
MA0009.10.673
MA0014.10.0774
MA0017.10.78
MA0018.20.093
MA0019.10.122
MA0024.10.0652
MA0025.10.69
MA0027.10.329
MA0028.14.54187e-7
MA0029.10.406
MA0030.10.913
MA0031.10.858
MA0035.20.43
MA0038.10.759
MA0039.20.0654
MA0040.10.56
MA0041.10.319
MA0042.10.686
MA0043.10.209
MA0046.10.145
MA0047.20.197
MA0048.10.0545
MA0050.10.0427
MA0051.10.159
MA0052.10.0669
MA0055.11.12894e-4
MA0057.10.517
MA0058.10.0147
MA0059.10.0639
MA0060.10.363
MA0061.10.0267
MA0062.27.63894e-7
MA0065.20.279
MA0066.10.645
MA0067.10.423
MA0068.19.24016e-5
MA0069.10.883
MA0070.10.102
MA0071.10.261
MA0072.10.996
MA0073.10.473
MA0074.10.463
MA0076.14.74145e-8
MA0077.10.928
MA0078.10.684
MA0079.20.685
MA0080.28.40022e-10
MA0081.10.216
MA0083.10.212
MA0084.10.281
MA0087.10.222
MA0088.10.00453
MA0090.10.475
MA0091.10.00438
MA0092.10.0604
MA0093.10.0265
MA0099.20.12
MA0100.10.365
MA0101.10.0877
MA0102.20.643
MA0103.10.365
MA0104.20.011
MA0105.10.0229
MA0106.10.511
MA0107.10.00844
MA0108.24.09946e-4
MA0111.10.721
MA0112.20.108
MA0113.10.348
MA0114.10.421
MA0115.10.484
MA0116.10.443
MA0117.10.689
MA0119.10.0751
MA0122.10.928
MA0124.10.582
MA0125.10.801
MA0131.10.037
MA0135.10.862
MA0136.11.34985e-5
MA0137.20.226
MA0138.20.325
MA0139.10.816
MA0140.10.875
MA0141.10.722
MA0142.10.278
MA0143.10.328
MA0144.10.0133
MA0145.10.567
MA0146.10.0163
MA0147.10.0144
MA0148.10.262
MA0149.10.05
MA0150.10.193
MA0152.10.868
MA0153.10.169
MA0154.10.0731
MA0155.10.109
MA0156.10.238
MA0157.10.119
MA0159.10.106
MA0160.10.886
MA0162.10.255
MA0163.10.359
MA0164.10.875
MA0258.10.306
MA0259.10.0951



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11259

Novel motifP-value
10.426
100.244
1000.031
1010.638
1020.652
1030.304
1040.539
1050.631
1061.34347e-4
1070.00902
1080.873
1090.167
110.792
1100.673
1110.707
1120.675
1130.0265
1140.752
1150.726
1160.946
1170.0774
1180.183
1190.145
120.233
1200.381
1210.737
1220.879
1230.245
1240.0962
1250.899
1260.905
1270.565
1287.94282e-4
1290.484
130.00242
1300.341
1310.558
1320.631
1330.359
1340.463
1355.48211e-4
1360.219
1370.382
1380.805
1390.7
140.841
1400.13
1410.435
1420.499
1430.0319
1440.771
1450.236
1460.0902
1470.761
1480.513
1490.168
150.942
1500.321
1510.553
1520.701
1530.947
1540.933
1550.964
1560.308
1570.678
1580.694
1590.472
160.908
1600.134
1610.804
1620.635
1630.977
1640.0718
1650.977
1660.327
1670.0992
1680.227
1690.268
170.43
180.684
190.228
20.0449
200.0179
210.104
220.518
230.0156
240.711
250.738
260.882
270.099
280.395
290.198
30.679
300.225
310.298
320.0206
330.214
340.191
350.641
360.0922
370.503
380.873
390.752
40.197
400.397
410.0076
420.589
430.355
440.688
450.153
460.637
470.425
480.466
490.537
50.476
500.608
510.35
520.0239
530.618
540.353
550.712
560.826
570.494
580.39
590.114
60.805
600.089
610.425
620.32
630.866
640.778
650.124
660.179
670.634
680.0289
690.802
70.852
700.518
710.996
720.44
730.274
740.514
750.0294
760.0378
770.428
780.546
790.0647
80.515
800.046
810.342
820.62
830.332
840.813
850.152
860.956
870.0886
880.808
890.282
90.0412
900.841
910.0419
920.394
930.286
940.335
950.0805
960.64
970.859
980.488
990.597



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11259


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000083 (epithelial cell of pancreas)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)
1793 (pancreatic cancer)
4074 (pancreas adenocarcinoma)
4905 (pancreatic carcinoma)
3498 (pancreatic ductal adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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