FF:10488-107B2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005788 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005788 | ||
|accession_numbers=CAGE;DRX007869;DRR008741;DRZ000166;DRZ001551;DRZ011516;DRZ012901 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057127;DRR062886;DRZ007962 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000083,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:170,DOID:1793,DOID:4074,DOID:4905,DOID:3498 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:170,DOID:1793,DOID:4074,DOID:4905,DOID:3498 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:46703687..46703740,-!p1@HOXB9!1.88!75.02!HOXB9;;chr3:189349162..189349207,+!p2@TP63!1.86!71.13!TP63;;chr5:92918919..92918942,+!p1@NR2F1!1.61!171.89!NR2F1;;chr17:46692457..46692484,-!p2@HOXB8!1.53!32.78!HOXB8;;chr6:10415276..10415341,-!p2@TFAP2A!1.51!37.87!TFAP2A;;chr11:34645791..34645836,+!p3@EHF!1.45!27.19!EHF;;chr6:10412600..10412637,-!p1@TFAP2A!1.42!41.76!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.40!24.04!HOXB6;;chr4:81118647..81118666,+!p1@PRDM8!1.30!25.25!PRDM8;;chr11:129245526..129245553,+!p1@BARX2!1.24!16.27!BARX2;;chr11:34663913..34663945,+!p6@EHF!1.21!15.05!EHF;;chr1:158985493..158985535,+!p4@IFI16!1.19!21.85!IFI16;;chr3:189348969..189349018,+!p4@TP63!1.19!14.32!TP63;;chr17:46690839..46690884,-!p1@HOXB8!1.12!12.14!HOXB8;;chr11:129245736..129245758,+!p2@BARX2!1.09!11.41!BARX2;;chr19:45971246..45971265,+!p1@FOSB!1.07!200.54!FOSB;;chr5:92919100..92919135,+!p3@NR2F1!1.07!13.11!NR2F1;;chr5:172662197..172662216,-!p1@NKX2-5!1.06!10.44!NKX2-5;;chr5:133450365..133450444,+!p1@TCF7!1.04!46.13!TCF7;;chr5:92918956..92918969,+!p4@NR2F1!1.02!10.44!NR2F1;;chr11:34664014..34664045,+!p4@EHF!1.02!9.47!EHF;;chr2:101436564..101436647,+!p1@NPAS2!1.01!192.28!NPAS2;;chr5:92919375..92919438,+!p6@NR2F1!0.99!9.47!NR2F1;;chr6:10415484..10415508,-!p3@TFAP2A!0.99!8.74!TFAP2A;;chr17:46703826..46703845,-!p3@HOXB9!0.99!8.74!HOXB9;;chr5:92918894..92918912,+!p2@NR2F1!0.98!28.65!NR2F1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.35!PITX1;;chr13:45151259..45151326,-!p2@TSC22D1!0.96!49.77!TSC22D1;;chr16:69599899..69599919,+!p2@NFAT5!0.95!93.23!NFAT5;;chr17:70117153..70117174,+!p1@SOX9!0.95!83.52!SOX9;;chr21:36421535..36421610,-!p2@RUNX1!0.94!28.16!RUNX1;;chr8:11561684..11561751,+!p1@GATA4!0.94!7.77!GATA4;;chr6:32095523..32095564,-!p2@ATF6B!0.92!10.20!ATF6B;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.50!TFAP2A;;chr17:46692624..46692659,-!p3@HOXB8!0.92!7.28!HOXB8;;chr5:137804484..137804498,+!p2@EGR1!0.91!30.10!EGR1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.91!7.04!LHX1;;chr3:141087393..141087426,+!p3@ZBTB38!0.90!28.65!ZBTB38;;chr19:50432453..50432468,+!p1@ATF5!0.89!395.25!ATF5;;chr1:42384532..42384603,-!p2@HIVEP3!0.88!6.56!HIVEP3;;chr2:73520667..73520683,-!p1@EGR4!0.88!6.56!EGR4;;chr17:46621146..46621180,-!p10@HOXB2!0.88!6.56!HOXB2;;chr11:31832658..31832681,-!p1@PAX6!0.88!6.56!PAX6;;chr13:45150455..45150472,-!p8@TSC22D1!0.88!6.56!TSC22D1;;chr17:46622205..46622218,-!p3@HOXB2!0.87!7.53!HOXB2;;chr3:141087339..141087387,+!p2@ZBTB38!0.86!67.49!ZBTB38;;chr6:126102292..126102329,+!p3@NCOA7!0.86!21.85!NCOA7;;chr2:19558373..19558392,-!p1@OSR1!0.86!17.97!OSR1;;chr16:69600209..69600234,+!p4@NFAT5!0.86!8.01!NFAT5;;chr2:113999360..113999386,-!p4@PAX8!0.86!6.31!PAX8;;chr7:27153454..27153469,-!p2@HOXA3!0.86!6.31!HOXA3;;chr6:10412576..10412599,-!p5@TFAP2A!0.85!6.07!TFAP2A;;chr17:46675558..46675577,-!p2@HOXB6!0.85!6.07!HOXB6;;chr16:67881588..67881612,-!p2@CENPT!0.84!8.25!CENPT;;chr17:46703528..46703549,-!p5@HOXB9!0.83!5.83!HOXB9;;chr6:34210478..34210481,+!p8@HMGA1!0.83!5.83!HMGA1;;chr6:34204672..34204692,+!p1@HMGA1!0.81!665.70!HMGA1;;chr16:68573640..68573660,+!p3@ZFP90!0.81!7.53!ZFP90;;chr17:46622229..46622257,-!p6@HOXB2!0.81!6.56!HOXB2;;chr17:46703212..46703238,-!p2@HOXB9!0.80!5.34!HOXB9;;chr7:73038839..73038862,-!p1@MLXIPL!0.80!5.34!MLXIPL;;chr19:49139477..49139552,-!p4@DBP!0.79!6.80!DBP;;chr5:92919068..92919082,+!p5@NR2F1!0.79!6.31!NR2F1;;chr11:65667884..65667895,-!p2@FOSL1!0.78!21.12!FOSL1;;chr9:129376201..129376225,+!p1@LMX1B!0.77!4.86!LMX1B;;chr6:34204921..34204939,+!p3@HMGA1!0.76!158.54!HMGA1;;chr8:128748308..128748324,+!p2@MYC!0.76!146.64!MYC;;chr8:67525443..67525459,-!p2@MYBL1!0.75!7.28!MYBL1;;chr14:61116183..61116208,-!p1@SIX1!0.74!18.94!SIX1;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.80!HOXB7;;chr17:46621101..46621143,-!p7@HOXB2!0.74!6.31!HOXB2;;chr17:46692603..46692621,-!p6@HOXB8!0.73!4.37!HOXB8;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.80!ETV4;;chr17:17740287..17740307,-!p1@SREBF1!0.71!122.36!SREBF1;;chr15:96869255..96869291,+!p6@NR2F2!0.71!8.01!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.71!5.83!NR2F2;;chr3:18486354..18486377,-!p2@SATB1!0.71!5.34!SATB1;;chr17:46692318..46692362,-!p5@HOXB8!0.71!4.13!HOXB8;;chr11:31832610..31832639,-!p5@PAX6!0.71!4.13!PAX6;;chr5:92919452..92919496,+!p11@NR2F1!0.71!4.13!NR2F1;;chr17:7590797..7590815,-!p1@TP53!0.70!197.62!TP53;;chrX:128657457..128657475,-!p1@SMARCA1!0.70!52.68!SMARCA1;;chr20:52185447..52185462,-!p2@ZNF217!0.69!6.56!ZNF217;;chr1:10856639..10856662,-!p2@CASZ1!0.69!3.88!CASZ1;;chr17:46622440..46622477,-!p5@HOXB2!0.68!4.37!HOXB2;;chr7:26191809..26191890,+!p1@NFE2L3!0.67!20.88!NFE2L3;;chr17:46622070..46622109,-!p1@HOXB2!0.67!8.98!HOXB2;;chr2:71127699..71127744,+!p1@VAX2!0.67!8.25!VAX2;;chr2:101591314..101591333,+!p2@NPAS2!0.67!4.37!NPAS2;;chr5:172662230..172662241,-!p3@NKX2-5!0.67!3.64!NKX2-5;;chr7:28725740..28725778,+!p1@CREB5!0.66!36.66!CREB5;;chr5:72744594..72744609,-!p1@FOXD1!0.65!18.45!FOXD1;;chr12:10875351..10875422,-!p4@CSDA!0.65!7.28!CSDA;;c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| |expression_enrichment_score=chr17:46703687..46703740,-!p1@HOXB9!1.88!75.02!HOXB9;;chr3:189349162..189349207,+!p2@TP63!1.86!71.13!TP63;;chr5:92918919..92918942,+!p1@NR2F1!1.61!171.89!NR2F1;;chr17:46692457..46692484,-!p2@HOXB8!1.53!32.78!HOXB8;;chr6:10415276..10415341,-!p2@TFAP2A!1.51!37.87!TFAP2A;;chr11:34645791..34645836,+!p3@EHF!1.45!27.19!EHF;;chr6:10412600..10412637,-!p1@TFAP2A!1.42!41.76!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.40!24.04!HOXB6;;chr4:81118647..81118666,+!p1@PRDM8!1.30!25.25!PRDM8;;chr11:129245526..129245553,+!p1@BARX2!1.24!16.27!BARX2;;chr11:34663913..34663945,+!p6@EHF!1.21!15.05!EHF;;chr1:158985493..158985535,+!p4@IFI16!1.19!21.85!IFI16;;chr3:189348969..189349018,+!p4@TP63!1.19!14.32!TP63;;chr17:46690839..46690884,-!p1@HOXB8!1.12!12.14!HOXB8;;chr11:129245736..129245758,+!p2@BARX2!1.09!11.41!BARX2;;chr19:45971246..45971265,+!p1@FOSB!1.07!200.54!FOSB;;chr5:92919100..92919135,+!p3@NR2F1!1.07!13.11!NR2F1;;chr5:172662197..172662216,-!p1@NKX2-5!1.06!10.44!NKX2-5;;chr5:133450365..133450444,+!p1@TCF7!1.04!46.13!TCF7;;chr5:92918956..92918969,+!p4@NR2F1!1.02!10.44!NR2F1;;chr11:34664014..34664045,+!p4@EHF!1.02!9.47!EHF;;chr2:101436564..101436647,+!p1@NPAS2!1.01!192.28!NPAS2;;chr5:92919375..92919438,+!p6@NR2F1!0.99!9.47!NR2F1;;chr6:10415484..10415508,-!p3@TFAP2A!0.99!8.74!TFAP2A;;chr17:46703826..46703845,-!p3@HOXB9!0.99!8.74!HOXB9;;chr5:92918894..92918912,+!p2@NR2F1!0.98!28.65!NR2F1;;chr5:134369905..134369972,-!p1@PITX1!0.98!13.35!PITX1;;chr13:45151259..45151326,-!p2@TSC22D1!0.96!49.77!TSC22D1;;chr16:69599899..69599919,+!p2@NFAT5!0.95!93.23!NFAT5;;chr17:70117153..70117174,+!p1@SOX9!0.95!83.52!SOX9;;chr21:36421535..36421610,-!p2@RUNX1!0.94!28.16!RUNX1;;chr8:11561684..11561751,+!p1@GATA4!0.94!7.77!GATA4;;chr6:32095523..32095564,-!p2@ATF6B!0.92!10.20!ATF6B;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.50!TFAP2A;;chr17:46692624..46692659,-!p3@HOXB8!0.92!7.28!HOXB8;;chr5:137804484..137804498,+!p2@EGR1!0.91!30.10!EGR1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.91!7.04!LHX1;;chr3:141087393..141087426,+!p3@ZBTB38!0.90!28.65!ZBTB38;;chr19:50432453..50432468,+!p1@ATF5!0.89!395.25!ATF5;;chr1:42384532..42384603,-!p2@HIVEP3!0.88!6.56!HIVEP3;;chr2:73520667..73520683,-!p1@EGR4!0.88!6.56!EGR4;;chr17:46621146..46621180,-!p10@HOXB2!0.88!6.56!HOXB2;;chr11:31832658..31832681,-!p1@PAX6!0.88!6.56!PAX6;;chr13:45150455..45150472,-!p8@TSC22D1!0.88!6.56!TSC22D1;;chr17:46622205..46622218,-!p3@HOXB2!0.87!7.53!HOXB2;;chr3:141087339..141087387,+!p2@ZBTB38!0.86!67.49!ZBTB38;;chr6:126102292..126102329,+!p3@NCOA7!0.86!21.85!NCOA7;;chr2:19558373..19558392,-!p1@OSR1!0.86!17.97!OSR1;;chr16:69600209..69600234,+!p4@NFAT5!0.86!8.01!NFAT5;;chr2:113999360..113999386,-!p4@PAX8!0.86!6.31!PAX8;;chr7:27153454..27153469,-!p2@HOXA3!0.86!6.31!HOXA3;;chr6:10412576..10412599,-!p5@TFAP2A!0.85!6.07!TFAP2A;;chr17:46675558..46675577,-!p2@HOXB6!0.85!6.07!HOXB6;;chr16:67881588..67881612,-!p2@CENPT!0.84!8.25!CENPT;;chr17:46703528..46703549,-!p5@HOXB9!0.83!5.83!HOXB9;;chr6:34210478..34210481,+!p8@HMGA1!0.83!5.83!HMGA1;;chr6:34204672..34204692,+!p1@HMGA1!0.81!665.70!HMGA1;;chr16:68573640..68573660,+!p3@ZFP90!0.81!7.53!ZFP90;;chr17:46622229..46622257,-!p6@HOXB2!0.81!6.56!HOXB2;;chr17:46703212..46703238,-!p2@HOXB9!0.80!5.34!HOXB9;;chr7:73038839..73038862,-!p1@MLXIPL!0.80!5.34!MLXIPL;;chr19:49139477..49139552,-!p4@DBP!0.79!6.80!DBP;;chr5:92919068..92919082,+!p5@NR2F1!0.79!6.31!NR2F1;;chr11:65667884..65667895,-!p2@FOSL1!0.78!21.12!FOSL1;;chr9:129376201..129376225,+!p1@LMX1B!0.77!4.86!LMX1B;;chr6:34204921..34204939,+!p3@HMGA1!0.76!158.54!HMGA1;;chr8:128748308..128748324,+!p2@MYC!0.76!146.64!MYC;;chr8:67525443..67525459,-!p2@MYBL1!0.75!7.28!MYBL1;;chr14:61116183..61116208,-!p1@SIX1!0.74!18.94!SIX1;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.80!HOXB7;;chr17:46621101..46621143,-!p7@HOXB2!0.74!6.31!HOXB2;;chr17:46692603..46692621,-!p6@HOXB8!0.73!4.37!HOXB8;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.80!ETV4;;chr17:17740287..17740307,-!p1@SREBF1!0.71!122.36!SREBF1;;chr15:96869255..96869291,+!p6@NR2F2!0.71!8.01!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.71!5.83!NR2F2;;chr3:18486354..18486377,-!p2@SATB1!0.71!5.34!SATB1;;chr17:46692318..46692362,-!p5@HOXB8!0.71!4.13!HOXB8;;chr11:31832610..31832639,-!p5@PAX6!0.71!4.13!PAX6;;chr5:92919452..92919496,+!p11@NR2F1!0.71!4.13!NR2F1;;chr17:7590797..7590815,-!p1@TP53!0.70!197.62!TP53;;chrX:128657457..128657475,-!p1@SMARCA1!0.70!52.68!SMARCA1;;chr20:52185447..52185462,-!p2@ZNF217!0.69!6.56!ZNF217;;chr1:10856639..10856662,-!p2@CASZ1!0.69!3.88!CASZ1;;chr17:46622440..46622477,-!p5@HOXB2!0.68!4.37!HOXB2;;chr7:26191809..26191890,+!p1@NFE2L3!0.67!20.88!NFE2L3;;chr17:46622070..46622109,-!p1@HOXB2!0.67!8.98!HOXB2;;chr2:71127699..71127744,+!p1@VAX2!0.67!8.25!VAX2;;chr2:101591314..101591333,+!p2@NPAS2!0.67!4.37!NPAS2;;chr5:172662230..172662241,-!p3@NKX2-5!0.67!3.64!NKX2-5;;chr7:28725740..28725778,+!p1@CREB5!0.66!36.66!CREB5;;chr5:72744594..72744609,-!p1@FOXD1!0.65!18.45!FOXD1;;chr12:10875351..10875422,-!p4@CSDA!0.65!7.28!CSDA;;c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F195;;chr6:34204973..34204990,+!p4@HMGA1!0.18!17.48!HMGA1;;chr19:40562072..40562143,-!p1@ZNF780B!0.18!11.90!ZNF780B;;chr11:129765427..129765492,-!p1@NFRKB!0.18!10.20!NFRKB;;chr8:146228270..146228295,-!p1@ZNF252!0.18!7.04!ZNF252P;;chr19:35225121..35225175,+!p1@ZNF181!0.18!7.04!ZNF181;;chrX:48900899..48900917,-!p2@TFE3!0.18!5.10!TFE3;;chr19:20959098..20959117,+!p1@ZNF66P!0.18!4.86!ZNF66P;;chr1:205601000..205601055,-!p2@ELK4!0.18!4.86!ELK4;;chr19:38210622..38210681,-!p1@ZNF607!0.18!4.37!ZNF607;;chr15:71184724..71184778,-!p1@THAP10!0.18!4.37!THAP10;;chr3:185826764..185826803,-!p2@ETV5!0.18!4.37!ETV5;;chrX:47696275..47696335,+!p1@ZNF81!0.18!4.13!ZNF81;;chr3:169490562..169490605,+!p2@MYNN!0.18!3.64!MYNN;;chr1:249132556..249132573,+!p3@ZNF672!0.18!3.16!ZNF672;;chr8:145669791..145669834,-!p1@TONSL!0.18!3.16!TONSL;;chr12:19592493..19592524,+!p3@AEBP2!0.18!2.91!AEBP2;;chr22:38598057..38598071,+!p3@MAFF!0.18!2.43!MAFF;;chr9:99180617..99180658,-!p1@ZNF367!0.18!2.19!ZNF367;;chr8:128750555..128750609,+!p5@MYC!0.18!1.94!MYC;;chr20:39946400..39946423,-!p3@ZHX3!0.18!1.70!ZHX3;;chr1:151431811..151431832,-!p3@POGZ!0.18!1.46!POGZ;;chr14:89029308..89029318,+!p3@ZC3H14!0.18!1.46!ZC3H14;;chr8:67525524..67525543,-!p3@MYBL1!0.18!1.46!MYBL1;;chr7:77428227..77428242,+!p3@PHTF2!0.18!1.21!PHTF2;;chr19:58666399..58666438,-!p3@ZNF329!0.18!1.21!ZNF329;;chr20:48807430..48807439,+!p8@CEBPB!0.18!1.21!CEBPB;;chr4:331619..331630,+!p2@ZNF141!0.18!1.21!ZNF141;;chr9:88969226..88969237,-!p4@ZCCHC6!0.18!1.21!ZCCHC6;;chr20:42136308..42136358,+!p2@L3MBTL1!0.18!0.97!L3MBTL;;chr12:133613902..133613924,+!p4@ZNF84!0.18!0.97!ZNF84;;chr5:178287112..178287133,+!p4@ZNF354B!0.18!0.97!ZNF354B;;chr7:27835758..27835772,+!p3@TAX1BP1!0.18!0.97!TAX1BP1;;chr9:110251836..110251887,-!p4@KLF4!0.18!0.97!KLF4;;chr6:20402070..20402082,+!p5@E2F3!0.18!0.73!E2F3;;chr6:41514178..41514192,+!p4@FOXP4!0.18!0.73!FOXP4;;chr7:74072282..74072287,+!p9@GTF2I!0.18!0.73!GTF2I;;chr10:3824229..3824253,-!p7@KLF6!0.18!0.73!KLF6;;chr13:37393324..37393335,+!p2@RFXAP!0.18!0.73!RFXAP;;chr14:61116168..61116180,-!p2@SIX1!0.18!0.73!SIX1;;chr22:21355896..21355920,-!p4@THAP7!0.18!0.73!THAP7;;chr2:27805971..27805981,+!p3@ZNF512!0.18!0.73!ZNF512;;chr18:3447572..3447603,+!p17@TGIF1!0.18!0.73!TGIF1;;chr6:136610911..136610990,-!p1@BCLAF1!0.17!117.99!BCLAF1;;chr1:26496382..26496457,+!p1@ZNF593!0.17!81.57!ZNF593;;chr1:53018743..53018777,-!p1@ZCCHC11!0.17!22.09!ZCCHC11;;chr11:695006..695074,-!p1@DEAF1!0.17!20.64!DEAF1;;chr16:67226019..67226127,+!p1@E2F4!0.17!16.99!E2F4;;chr2:85198369..85198483,+!p2@KCMF1!0.17!15.05!KCMF1;;chr2:70142232..70142251,+!p1@MXD1!0.17!6.80!MXD1;;chr7:99102865..99102894,+!p1@ZKSCAN5!0.17!5.83!ZKSCAN5;;chr6:44355257..44355315,+!p2@CDC5L!0.17!5.34!CDC5L;;chr8:102217679..102217719,-!p2@ZNF706!0.17!3.88!ZNF706;;chr16:2059754..2059777,-!p2@ZNF598!0.17!3.88!ZNF598;;chr6:56954867..56954882,+!p2@ZNF451!0.17!3.16!ZNF451;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.17!3.16!ZKSCAN1;;chr22:20748456..20748488,+!p2@ZNF74!0.17!2.67!ZNF74;;chr6:45390025..45390076,+!p2@RUNX2!0.17!2.43!RUNX2;;chr4:56412767..56412799,-!p3@CLOCK!0.17!2.19!CLOCK;;chr18:32957260..32957309,-!p1@ZNF396!0.17!2.19!ZNF396;;chr19:52408227..52408243,-!p2@ZNF649!0.17!2.19!ZNF649;;chr19:56152332..56152347,+!p4@ZNF580!0.17!2.19!ZNF580;;chr20:42143077..42143126,+!p1@L3MBTL1!0.17!1.94!L3MBTL;;chr8:145159324..145159333,+!p5@MAF1!0.17!1.94!MAF1;;chr1:26496459..26496470,+!p2@ZNF593!0.17!1.70!ZNF593;;chr20:52210368..52210384,-!p1@ZNF217!0.17!1.70!ZNF217;;chr10:97889464..97889494,+!p3@ZNF518A!0.17!1.70!ZNF518A;;chr19:19976714..19976729,+!p3@ZNF253!0.17!1.70!ZNF253;;chr19:37997812..37997866,+!p1@ZNF793!0.17!1.46!ZNF793;;chr19:50168861..50168873,-!p3@IRF3!0.17!1.46!IRF3;;chr6:45390002..45390023,+!p6@RUNX2!0.17!1.46!RUNX2;;chr13:27998871..27998884,+!p4@GTF3A!0.17!1.21!GTF3A;;chr14:62203749..62203798,+!p5@HIF1A!0.17!1.21!HIF1A;;chr11:65687243..65687276,+!p8@DRAP1!0.17!0.97!DRAP1;;chr12:72056800..72056834,+!p1@THAP2!0.17!0.97!THAP2;;chr13:46549688..46549712,-!p5@ZC3H13!0.17!0.97!ZC3H13;;chr1:244219775..244219893,+!p2@ZNF238!0.17!0.97!ZNF238;;chr8:145535860..145535895,+!p2@HSF1!0.17!0.97!HSF1;;chr7:111846777..111846804,+!p2@ZNF277!0.17!0.73!ZNF277;;chr7:77428282..77428293,+!p4@PHTF2!0.17!0.73!PHTF2;;chr12:26278008..26278024,-!p4@BHLHE41!0.17!0.73!BHLHE41;;chr2:178129518..178129533,-!p10@NFE2L2!0.17!0.73!NFE2L2;;chr3:5022174..5022207,+!p8@BHLHE40!0.17!0.73!BHLHE40;;chr22:24093154..24093183,-!p2@ZNF70!0.17!0.49!ZNF70;;chr22:31742554..31742565,-!p4@PATZ1!0.17!0.49!PATZ1;;chr22:42739839..42739867,-!p1@ENST00000515426!0.17!0.49!TCF20;;chr2:101437588..101437619,+!p10@NPAS2!0.17!0.49!NPAS2;;chr2:113999688..113999704,-!p15@PAX8!0.17!0.49!PAX8;;chr2:119605214..119605230,-!p1@EN1!0.17!0.49!EN1;;chr2:119605253..119605264,-!p5@EN1!0.17!0.49!EN1;;chr2:172950227..172950249,+!p2@DLX1!0.17!0.49!DLX1;;chr2:172967276..172967296,-!p3@DLX2!0.17!0.49!DLX2;;chr2:200213794..200213807,-!p9@SATB2!0.17!0.49!SATB2;;chr2:220094657..220094664,+!p3@ANKZF1!0.17!0.49!ANKZF1;;chr2:45168875..45168916,+!p1@SIX3!0.17!0.49!SIX3;;chr2:45168997..45169020,+!p4@SIX3!0.17!0.49!SIX3;;chr2:45169143..45169167,+!p5@SIX3!0.17!0.49!SIX3;;chr2:96012277..96012290,+!p5@KCNIP3!0.17!0.49!KCNIP3;;chr3:141121820..141121838,+!p9@ZBTB38!0.17!0.49!ZBTB38;;chr3:157824156..157824164,-!p4@SHOX2!0.17!0.49!SHOX2;;chr3:18467290..18467311,-!p8@SATB1!0.17!0.49!SATB1;;chr3:189526056..189526064,+!p15@TP63!0.17!0.49!TP63;;chr3:189526110..189526125,+!p8@TP63!0.17!0.49!TP63;;chr4:47916061..47916098,-!p8@NFXL1!0.17!0.49!NFXL1;;chr5:121465268..121465281,+!p2@ZNF474!0.17!0.49!ZNF474;;chr5:133477905..133477956,+!p5@TCF7!0.17!0.49!TCF7;;chr5:134369222..134369237,-!p8@PITX1!0.17!0.49!PITX1;;chr5:139494422..139494433,+!p12@PURA!0.17!0.49!PURA;;chr5:174151612..174151633,+!p2@MSX2!0.17!0.49!MSX2;;chr5:72744336..72744359,-!p5@FOXD1!0.17!0.49!FOXD1;;chr5:76382989..76383001,-!p4@ZBED3!0.17!0.49!ZBED3;;chr5:92918789..92918800,+!p12@NR2F1!0.17!0.49!NR2F1;;chr5:92920517..92920532,+!p15@NR2F1!0.17!0.49!NR2F1;;chr6:10412338..10412345,-!p17@TFAP2A!0.17!0.49!TFAP2A;;chr6:10413188..10413249,-!p7@TFAP2A!0.17!0.49!TFAP2A;;chr6:1610178..1610190,+!p5@FOXC1!0.17!0.49!FOXC1;;chr6:21597499..21597513,+!p16@SOX4!0.17!0.49!SOX4;;chr6:27356595..27356611,+!p6@ZNF391!0.17!0.49!ZNF391;;chr6:27440578..27440596,-!p8@ZNF184!0.17!0.49!ZNF184;;chr6:28109726..28109735,+!p5@ZNF192!0.17!0.49!ZNF192;;chr7:111846692..111846704,+!p3@ZNF277!0.17!0.49!ZNF277;;chr7:14029034..14029087,-!p5@ETV1!0.17!0.49!ETV1;;chr7:149471046..149471070,-!p4@ZNF467!0.17!0.49!ZNF467;;chr7:150945865..150945896,-!p4@SMARCD3!0.17!0.49!SMARCD3;;chr7:27153428..27153440,-!p3@HOXA3!0.17!0.49!HOXA3;;chr7:28763873..28763898,+!p7@CREB5!0.17!0.49!CREB5;;chr7:96635329..96635357,+!p9@DLX6!0.17!0.49!DLX6;;chr8:128747846..128747860,+!p15@MYC!0.17!0.49!MYC;;chr8:28748961..28748996,+!p6@HMBOX1!0.17!0.49!HMBOX1;;chr8:41909898..41909910,-!p4@KAT6A!0.17!0.49!KAT6A;;chr8:42698383..42698394,-!p5@THAP1!0.17!0.49!THAP1;;chr8:76319850..76319870,+!p4@HNF4G!0.17!0.49!HNF4G;;chr9:16705069..16705086,-!p3@BNC2!0.17!0.49!BNC2;;chr9:2157749..2157764,+!p26@SMARCA2!0.17!0.49!SMARCA2;;chrX:70316101..70316112,+!p5@FOXO4!0.17!0.49!FOXO4;;chr9:128509878..128509902,+!p5@PBX3!0.17!0.49!PBX3;;chrX:24167086..24167111,+!p4@ZFX!0.17!0.49!ZFX;;chr9:130953000..130953012,-!p10@CIZ1!0.17!0.49!CIZ1;;chrX:128657363..128657372,-!p3@SMARCA1!0.17!0.49!SMARCA1;;chr14:75747250..75747267,+!p5@FOS!0.17!0.49!FOS;;chr14:90085820..90085840,-!p6@FOXN3!0.17!0.49!FOXN3;;chr14:95236551..95236576,-!p2@GSC!0.17!0.49!GSC;;chr15:76629007..76629012,+!p4@ISL2!0.17!0.49!ISL2;;chr15:90294087..90294115,-!p1@MESP1!0.17!0.49!MESP1;;chr15:96880438..96880445,+!p23@NR2F2!0.17!0.49!NR2F2;;chr16:54320302..54320317,-!p10@IRX3!0.17!0.49!IRX3;;chr16:54964899..54964914,+!p2@IRX5!0.17!0.49!IRX5;;chr16:69419590..69419601,-!p5@TERF2!0.17!0.49!TERF2;;chr17:38497715..38497734,+!p8@RARA!0.17!0.49!RARA;;chr17:41622982..41623001,-!p11@ETV4!0.17!0.49!ETV4;;chr17:46675469..46675481,-!p4@HOXB6!0.17!0.49!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.17!0.49!HOXB7;;chr17:4981535..4981551,+!p2@ZFP3!0.17!0.49!ZFP3;;chr19:12595565..12595576,-!p3@ZNF709!0.17!0.49!ZNF709;;chr19:1622138..1622153,-!p7@TCF3!0.17!0.49!TCF3;;chr19:1863437..1863446,-!p5@KLF16!0.17!0.49!KLF16;;chr19:37808831..37808843,+!p6@HKR1!0.17!0.49!HKR1;;chr10:102505327..102505344,+!p1@PAX2!0.17!0.49!PAX2;;chr10:131762589..131762601,-!p3@EBF3!0.17!0.49!EBF3;;chr10:35416223..35416234,+!p12@CREM!0.17!0.49!CREM;;chr10:3818974..3818985,-!p25@KLF6!0.17!0.49!KLF6;; | ||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/ductal%2520cell%2520carcinoma%2520cell%2520line%253aMIA%2520Paca2.CNhs11259.10488-107B2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10488-107B2 | |id=FF:10488-107B2 | ||
|is_a=CL:0000083;;DOID:3498;;EFO:0002091;;FF: | |is_a=CL:0000083;;DOID:3498;;EFO:0002091;;FF:0000210;;FF:0100297 | ||
|is_obsolete= | |||
|library_id=CNhs11259 | |||
|library_id_phase_based=2:CNhs11259 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10488 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10488 | |||
|name=ductal cell carcinoma cell line:MIA Paca2 | |name=ductal cell carcinoma cell line:MIA Paca2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11259,LSID758,release008,COMPLETED | |profile_hcage=CNhs11259,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.134395368941553,0.171890419039995,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0589286221601953,0,0,0,0,0,-0.00356350807982518,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.123474585114869,0,0,0,0,0,0,0,0,0.0229821729812818,0,0,0,0,0,0,0,-0.0025979730543728,0,0,-0.00294923902486463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234545870181475,0.0875561061732278,0,0,0,0,0.0738550678022887,-0.138477200800895,0,0,0,0.0943943881882323,0,0,0,0,0,0,0.26617143316592,0,0,0,0,0,0,0.0224411397294889,0.0943943881882323,0,0,-0.11991684384043,-0.248204829066226,0,0,0,0,0,0 | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 56: | Line 79: | ||
|rna_tube_id=107B2 | |rna_tube_id=107B2 | ||
|rna_weight_ug=53.6295 | |rna_weight_ug=53.6295 | ||
|rnaseq_library_id=RDhi10070 | |||
|sample_age=65 | |sample_age=65 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2094 | |sample_cell_catalog=RCB2094 | ||
|sample_cell_line=MIA Paca2 | |sample_cell_line=MIA Paca2 | ||
Line 69: | Line 94: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.03921307050276e-273!GO:0043231;intracellular membrane-bound organelle;2.43596052923788e-229!GO:0043227;membrane-bound organelle;2.49608345234526e-229!GO:0043226;organelle;2.4556335348866e-226!GO:0043229;intracellular organelle;1.24761223462914e-225!GO:0005737;cytoplasm;1.73177339657112e-194!GO:0044422;organelle part;8.45585961602448e-172!GO:0044446;intracellular organelle part;4.09918553880476e-170!GO:0044444;cytoplasmic part;2.23148816104671e-147!GO:0032991;macromolecular complex;3.49518779267895e-109!GO:0044237;cellular metabolic process;4.92782329717988e-100!GO:0044238;primary metabolic process;1.44551150841343e-99!GO:0030529;ribonucleoprotein complex;6.21534401468887e-94!GO:0044428;nuclear part;1.13396248480481e-91!GO:0043233;organelle lumen;2.43668902780821e-91!GO:0031974;membrane-enclosed lumen;2.43668902780821e-91!GO:0043170;macromolecule metabolic process;1.45877163107134e-90!GO:0005634;nucleus;1.45905219567436e-90!GO:0005739;mitochondrion;2.63827655116132e-84!GO:0003723;RNA binding;4.73557351539356e-83!GO:0006396;RNA processing;4.27002657108849e-62!GO:0005515;protein binding;1.54534943182875e-60!GO:0031090;organelle membrane;2.03194450821255e-57!GO:0043234;protein complex;1.15976436937754e-54!GO:0031981;nuclear lumen;1.29327625206224e-54!GO:0044429;mitochondrial part;1.33545645729841e-54!GO:0005840;ribosome;5.06015016010265e-53!GO:0006412;translation;1.63445695631174e-52!GO:0043283;biopolymer metabolic process;3.28893733502681e-52!GO:0031967;organelle envelope;2.35434913361736e-50!GO:0031975;envelope;3.03990161619827e-50!GO:0019538;protein metabolic process;1.03671938572173e-49!GO:0033036;macromolecule localization;2.6033018225703e-49!GO:0016043;cellular component organization and biogenesis;4.37306097731831e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.54894489004885e-48!GO:0015031;protein transport;7.93409929759221e-48!GO:0010467;gene expression;4.80135849720515e-47!GO:0003735;structural constituent of ribosome;1.28406600015219e-45!GO:0008104;protein localization;1.02267690558006e-44!GO:0045184;establishment of protein localization;2.23327021386767e-44!GO:0016071;mRNA metabolic process;3.51187693048249e-44!GO:0044260;cellular macromolecule metabolic process;1.04175723774193e-43!GO:0044267;cellular protein metabolic process;2.75891118448687e-43!GO:0044249;cellular biosynthetic process;6.22686438185758e-43!GO:0009058;biosynthetic process;3.78953946412072e-42!GO:0008380;RNA splicing;3.61228565624004e-41!GO:0033279;ribosomal subunit;2.03316269120794e-39!GO:0006397;mRNA processing;5.93503862084439e-39!GO:0006259;DNA metabolic process;1.65965061588831e-38!GO:0046907;intracellular transport;2.97479203730947e-38!GO:0005829;cytosol;9.76067338828409e-38!GO:0065003;macromolecular complex assembly;1.93118598338458e-37!GO:0043228;non-membrane-bound organelle;2.65442547072311e-37!GO:0043232;intracellular non-membrane-bound organelle;2.65442547072311e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.13032478038274e-37!GO:0009059;macromolecule biosynthetic process;7.24016376435246e-37!GO:0000166;nucleotide binding;1.09117330310018e-34!GO:0006996;organelle organization and biogenesis;1.10880727340169e-34!GO:0005740;mitochondrial envelope;6.4271547651557e-34!GO:0022607;cellular component assembly;5.32729803043363e-33!GO:0006886;intracellular protein transport;1.58150012828843e-32!GO:0003676;nucleic acid binding;2.53472329296656e-32!GO:0019866;organelle inner membrane;4.37137334159581e-32!GO:0031966;mitochondrial membrane;1.29295647980275e-31!GO:0005654;nucleoplasm;1.58625275370696e-31!GO:0005743;mitochondrial inner membrane;4.9980865640875e-30!GO:0005681;spliceosome;1.41778085221233e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.29275685406826e-27!GO:0051649;establishment of cellular localization;2.96401337798862e-26!GO:0017111;nucleoside-triphosphatase activity;3.57461992148285e-26!GO:0016462;pyrophosphatase activity;3.64505576434189e-26!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.83173785671016e-26!GO:0016817;hydrolase activity, acting on acid anhydrides;5.44677027030965e-26!GO:0051641;cellular localization;5.64641469074644e-26!GO:0031980;mitochondrial lumen;1.1253940643605e-25!GO:0005759;mitochondrial matrix;1.1253940643605e-25!GO:0007049;cell cycle;3.09889447078145e-25!GO:0044451;nucleoplasm part;4.06397933737555e-25!GO:0005730;nucleolus;4.06397933737555e-25!GO:0017076;purine nucleotide binding;9.15464357593285e-25!GO:0032553;ribonucleotide binding;3.18384713188244e-24!GO:0032555;purine ribonucleotide binding;3.18384713188244e-24!GO:0006974;response to DNA damage stimulus;1.5008179097596e-23!GO:0006119;oxidative phosphorylation;2.75231366182608e-23!GO:0012505;endomembrane system;6.63846540511408e-23!GO:0006457;protein folding;1.0008059642045e-22!GO:0016874;ligase activity;1.62468209874254e-22!GO:0044445;cytosolic part;2.71374455833169e-22!GO:0016070;RNA metabolic process;5.02726203912507e-22!GO:0015935;small ribosomal subunit;8.65722703912081e-21!GO:0006512;ubiquitin cycle;1.04578181302208e-20!GO:0044455;mitochondrial membrane part;1.24504081642271e-20!GO:0044265;cellular macromolecule catabolic process;1.24514409724267e-20!GO:0006281;DNA repair;1.42872317045502e-20!GO:0030554;adenyl nucleotide binding;6.49040585814586e-20!GO:0022618;protein-RNA complex assembly;6.91985793629556e-20!GO:0015934;large ribosomal subunit;1.08959856057625e-19!GO:0032559;adenyl ribonucleotide binding;1.60130776818741e-19!GO:0005524;ATP binding;2.04441562231766e-19!GO:0044248;cellular catabolic process;2.69715017395792e-19!GO:0043285;biopolymer catabolic process;1.7523201401319e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.7523201401319e-18!GO:0051186;cofactor metabolic process;2.41613719868259e-18!GO:0044257;cellular protein catabolic process;3.12105214739575e-18!GO:0019941;modification-dependent protein catabolic process;3.18638486590038e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.18638486590038e-18!GO:0005694;chromosome;4.04148086866412e-18!GO:0006511;ubiquitin-dependent protein catabolic process;5.94361243386124e-18!GO:0022402;cell cycle process;6.64534273347126e-18!GO:0009057;macromolecule catabolic process;6.67378484864224e-18!GO:0042254;ribosome biogenesis and assembly;6.9239030950654e-18!GO:0005783;endoplasmic reticulum;7.86145284870949e-18!GO:0008135;translation factor activity, nucleic acid binding;1.18959393417453e-17!GO:0016887;ATPase activity;1.61952260036276e-17!GO:0005635;nuclear envelope;7.78809124720773e-17!GO:0005746;mitochondrial respiratory chain;8.97784342882437e-17!GO:0000278;mitotic cell cycle;9.14268683869843e-17!GO:0048770;pigment granule;1.10459320693579e-16!GO:0042470;melanosome;1.10459320693579e-16!GO:0044432;endoplasmic reticulum part;1.57492482105581e-16!GO:0006260;DNA replication;1.76704322100585e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.76704322100585e-16!GO:0042623;ATPase activity, coupled;2.37691595893885e-16!GO:0005761;mitochondrial ribosome;2.47421417011326e-16!GO:0000313;organellar ribosome;2.47421417011326e-16!GO:0006605;protein targeting;2.87415448588154e-16!GO:0009719;response to endogenous stimulus;2.98530457663354e-16!GO:0031965;nuclear membrane;4.07750637299124e-16!GO:0030163;protein catabolic process;8.48852201979021e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.48219781193474e-15!GO:0006399;tRNA metabolic process;4.44626109738142e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.3893671083823e-15!GO:0003954;NADH dehydrogenase activity;5.3893671083823e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.3893671083823e-15!GO:0044453;nuclear membrane part;6.06084797127776e-15!GO:0044427;chromosomal part;6.41981174492208e-15!GO:0051082;unfolded protein binding;8.20825878544599e-15!GO:0051276;chromosome organization and biogenesis;1.40213926019977e-14!GO:0048193;Golgi vesicle transport;1.58426085036187e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.81511886723352e-14!GO:0000375;RNA splicing, via transesterification reactions;1.81511886723352e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.81511886723352e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.04382650133326e-14!GO:0006732;coenzyme metabolic process;4.24048427970759e-14!GO:0004386;helicase activity;5.47168110148314e-14!GO:0008134;transcription factor binding;5.63680588168041e-14!GO:0016192;vesicle-mediated transport;7.69608092724689e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.62261657710737e-13!GO:0042773;ATP synthesis coupled electron transport;1.62261657710737e-13!GO:0005794;Golgi apparatus;2.21260711540036e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.28753550069733e-13!GO:0043412;biopolymer modification;3.74943222573168e-13!GO:0016604;nuclear body;5.32151609174186e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.68447993978709e-13!GO:0045271;respiratory chain complex I;5.68447993978709e-13!GO:0005747;mitochondrial respiratory chain complex I;5.68447993978709e-13!GO:0000087;M phase of mitotic cell cycle;7.03544757372769e-13!GO:0003743;translation initiation factor activity;7.58697511433402e-13!GO:0005643;nuclear pore;9.13033107530775e-13!GO:0007067;mitosis;1.49874588023635e-12!GO:0022403;cell cycle phase;1.50135967696504e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.5312202346252e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.91289713325032e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.46565907084308e-12!GO:0006413;translational initiation;3.50232333198076e-12!GO:0006403;RNA localization;3.51536816425236e-12!GO:0008026;ATP-dependent helicase activity;3.71096888860322e-12!GO:0006364;rRNA processing;4.03479505380663e-12!GO:0050657;nucleic acid transport;4.74859449421399e-12!GO:0051236;establishment of RNA localization;4.74859449421399e-12!GO:0050658;RNA transport;4.74859449421399e-12!GO:0009259;ribonucleotide metabolic process;5.01785808676796e-12!GO:0065002;intracellular protein transport across a membrane;6.12886518818437e-12!GO:0005789;endoplasmic reticulum membrane;8.10038629152473e-12!GO:0016072;rRNA metabolic process;8.334620267844e-12!GO:0006163;purine nucleotide metabolic process;1.18720052190245e-11!GO:0006913;nucleocytoplasmic transport;1.22770295156053e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.25363923773958e-11!GO:0006461;protein complex assembly;1.27115582055835e-11!GO:0009056;catabolic process;1.46577450716537e-11!GO:0008565;protein transporter activity;1.59384328768121e-11!GO:0006446;regulation of translational initiation;1.64875377618218e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.6206221685834e-11!GO:0051169;nuclear transport;2.6598427994433e-11!GO:0006323;DNA packaging;3.9208205962123e-11!GO:0006464;protein modification process;7.09631889461568e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.78231661651268e-11!GO:0051301;cell division;8.80328382192294e-11!GO:0009055;electron carrier activity;9.74561289138515e-11!GO:0009150;purine ribonucleotide metabolic process;1.13761804306669e-10!GO:0006164;purine nucleotide biosynthetic process;1.17346676473627e-10!GO:0046930;pore complex;1.34560235856652e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.42565651667576e-10!GO:0004812;aminoacyl-tRNA ligase activity;1.42565651667576e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.42565651667576e-10!GO:0000279;M phase;1.5024016149867e-10!GO:0009260;ribonucleotide biosynthetic process;1.68346407509053e-10!GO:0016607;nuclear speck;1.69421000281717e-10!GO:0008639;small protein conjugating enzyme activity;2.19468987068048e-10!GO:0043038;amino acid activation;2.27880848306666e-10!GO:0006418;tRNA aminoacylation for protein translation;2.27880848306666e-10!GO:0043039;tRNA aminoacylation;2.27880848306666e-10!GO:0012501;programmed cell death;2.72902896684146e-10!GO:0043687;post-translational protein modification;3.56976174295731e-10!GO:0051028;mRNA transport;3.5812606762871e-10!GO:0006915;apoptosis;3.88486675649846e-10!GO:0004842;ubiquitin-protein ligase activity;4.20511283186484e-10!GO:0005768;endosome;5.98885154529066e-10!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.19244119297161e-10!GO:0019787;small conjugating protein ligase activity;6.55291913842135e-10!GO:0009199;ribonucleoside triphosphate metabolic process;7.45450486988455e-10!GO:0051188;cofactor biosynthetic process;8.81715000099291e-10!GO:0009152;purine ribonucleotide biosynthetic process;1.11169195491456e-09!GO:0009141;nucleoside triphosphate metabolic process;1.22684077730416e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.43825972635241e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.52318523040051e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.52318523040051e-09!GO:0065004;protein-DNA complex assembly;1.63562918896359e-09!GO:0051726;regulation of cell cycle;2.62786572102311e-09!GO:0008219;cell death;2.67827075818337e-09!GO:0016265;death;2.67827075818337e-09!GO:0009142;nucleoside triphosphate biosynthetic process;3.24438214838816e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.24438214838816e-09!GO:0015630;microtubule cytoskeleton;3.25621636441189e-09!GO:0016881;acid-amino acid ligase activity;3.58179687661059e-09!GO:0000074;regulation of progression through cell cycle;3.64978357424912e-09!GO:0015986;ATP synthesis coupled proton transport;4.06230550982027e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.06230550982027e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.45876550344147e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.77486460254634e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.77486460254634e-09!GO:0003712;transcription cofactor activity;7.22069063551762e-09!GO:0005793;ER-Golgi intermediate compartment;7.41995673791136e-09!GO:0006366;transcription from RNA polymerase II promoter;7.94778168817468e-09!GO:0015078;hydrogen ion transmembrane transporter activity;8.45545548972525e-09!GO:0017038;protein import;9.43678777688556e-09!GO:0006333;chromatin assembly or disassembly;9.71571244494666e-09!GO:0043566;structure-specific DNA binding;9.71571244494666e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.13823935897987e-08!GO:0009060;aerobic respiration;1.24427443145946e-08!GO:0046034;ATP metabolic process;1.38765835893522e-08!GO:0016779;nucleotidyltransferase activity;1.61281526689605e-08!GO:0019829;cation-transporting ATPase activity;1.67766559231018e-08!GO:0007005;mitochondrion organization and biogenesis;1.8733088518752e-08!GO:0016568;chromatin modification;2.25543539546804e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.749988401229e-08!GO:0016491;oxidoreductase activity;2.91700014891721e-08!GO:0006261;DNA-dependent DNA replication;3.26603932302318e-08!GO:0000785;chromatin;3.27370651638652e-08!GO:0016787;hydrolase activity;3.68535624550961e-08!GO:0006754;ATP biosynthetic process;5.1864096659463e-08!GO:0006753;nucleoside phosphate metabolic process;5.1864096659463e-08!GO:0045333;cellular respiration;6.79404489891733e-08!GO:0003697;single-stranded DNA binding;1.02489969674636e-07!GO:0009108;coenzyme biosynthetic process;1.41546190788856e-07!GO:0005667;transcription factor complex;1.75921109432075e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.79082608667911e-07!GO:0005773;vacuole;2.59512566039144e-07!GO:0016740;transferase activity;2.67900907392971e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.73787348677029e-07!GO:0043623;cellular protein complex assembly;2.78507882790934e-07!GO:0006752;group transfer coenzyme metabolic process;2.89715214516206e-07!GO:0000245;spliceosome assembly;2.91122601708919e-07!GO:0009117;nucleotide metabolic process;3.37190518415618e-07!GO:0006099;tricarboxylic acid cycle;3.99324652150906e-07!GO:0046356;acetyl-CoA catabolic process;3.99324652150906e-07!GO:0031988;membrane-bound vesicle;4.49826750383823e-07!GO:0006084;acetyl-CoA metabolic process;4.99089852909712e-07!GO:0016563;transcription activator activity;6.20545821760942e-07!GO:0051246;regulation of protein metabolic process;6.60995117534092e-07!GO:0032446;protein modification by small protein conjugation;6.77886067658542e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.91071408762652e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.41317834147608e-07!GO:0016567;protein ubiquitination;9.05828148228612e-07!GO:0030120;vesicle coat;1.01517622603684e-06!GO:0030662;coated vesicle membrane;1.01517622603684e-06!GO:0003924;GTPase activity;1.03264768957194e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.11935936108021e-06!GO:0051187;cofactor catabolic process;1.13009837923928e-06!GO:0048475;coated membrane;1.15485124453118e-06!GO:0030117;membrane coat;1.15485124453118e-06!GO:0045259;proton-transporting ATP synthase complex;1.15694598867745e-06!GO:0005788;endoplasmic reticulum lumen;1.1766218464137e-06!GO:0005525;GTP binding;1.18814017039895e-06!GO:0005813;centrosome;1.28268874469089e-06!GO:0042981;regulation of apoptosis;1.46854070685538e-06!GO:0008654;phospholipid biosynthetic process;1.55572437937336e-06!GO:0009109;coenzyme catabolic process;1.76817973061864e-06!GO:0044440;endosomal part;1.8463034388473e-06!GO:0010008;endosome membrane;1.8463034388473e-06!GO:0005815;microtubule organizing center;2.11391976436879e-06!GO:0043067;regulation of programmed cell death;2.12386874778059e-06!GO:0050794;regulation of cellular process;2.24055005978279e-06!GO:0000323;lytic vacuole;2.42185007365637e-06!GO:0005764;lysosome;2.42185007365637e-06!GO:0031982;vesicle;2.72456816490722e-06!GO:0008033;tRNA processing;2.83884523868868e-06!GO:0016853;isomerase activity;2.99594903032311e-06!GO:0005770;late endosome;3.32755951213122e-06!GO:0051170;nuclear import;3.60904207862439e-06!GO:0003724;RNA helicase activity;4.79974111675739e-06!GO:0051427;hormone receptor binding;4.80113995903704e-06!GO:0031410;cytoplasmic vesicle;4.85436393439923e-06!GO:0000151;ubiquitin ligase complex;5.89112114273928e-06!GO:0006091;generation of precursor metabolites and energy;6.03212863465406e-06!GO:0048523;negative regulation of cellular process;6.47043431988142e-06!GO:0003899;DNA-directed RNA polymerase activity;6.82091459239072e-06!GO:0044431;Golgi apparatus part;7.46015457494723e-06!GO:0031497;chromatin assembly;8.33280990750982e-06!GO:0006334;nucleosome assembly;8.6844513461057e-06!GO:0006606;protein import into nucleus;9.8871425316114e-06!GO:0043069;negative regulation of programmed cell death;1.02035641810749e-05!GO:0035257;nuclear hormone receptor binding;1.04600313737845e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.05426862940457e-05!GO:0043066;negative regulation of apoptosis;1.29157899694649e-05!GO:0000775;chromosome, pericentric region;1.43880271122118e-05!GO:0005798;Golgi-associated vesicle;1.51766940644853e-05!GO:0050662;coenzyme binding;1.56445115723061e-05!GO:0005762;mitochondrial large ribosomal subunit;1.64149857427319e-05!GO:0000315;organellar large ribosomal subunit;1.64149857427319e-05!GO:0016363;nuclear matrix;1.70718571692945e-05!GO:0006613;cotranslational protein targeting to membrane;1.76439722888591e-05!GO:0003713;transcription coactivator activity;1.82976136820105e-05!GO:0032561;guanyl ribonucleotide binding;1.85163574442516e-05!GO:0019001;guanyl nucleotide binding;1.85163574442516e-05!GO:0005819;spindle;2.0666814538203e-05!GO:0005657;replication fork;2.06873454787419e-05!GO:0044452;nucleolar part;2.69878474020191e-05!GO:0006916;anti-apoptosis;3.59650418296968e-05!GO:0003690;double-stranded DNA binding;3.64613563765304e-05!GO:0000314;organellar small ribosomal subunit;3.95874980733409e-05!GO:0005763;mitochondrial small ribosomal subunit;3.95874980733409e-05!GO:0048519;negative regulation of biological process;3.96343626743984e-05!GO:0019899;enzyme binding;3.98478925897845e-05!GO:0048037;cofactor binding;4.06688322522605e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.20038548413882e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.57402315358535e-05!GO:0015399;primary active transmembrane transporter activity;4.57402315358535e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.87012923070013e-05!GO:0004298;threonine endopeptidase activity;4.95251600010405e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.08910514800584e-05!GO:0045454;cell redox homeostasis;5.56915162214058e-05!GO:0008094;DNA-dependent ATPase activity;5.97833198683537e-05!GO:0051168;nuclear export;6.52511968603029e-05!GO:0051329;interphase of mitotic cell cycle;6.5283950987515e-05!GO:0006414;translational elongation;6.53267323019182e-05!GO:0006626;protein targeting to mitochondrion;6.58807424686382e-05!GO:0006612;protein targeting to membrane;7.05796709173339e-05!GO:0016859;cis-trans isomerase activity;7.50761232911166e-05!GO:0046483;heterocycle metabolic process;8.32416119047951e-05!GO:0000059;protein import into nucleus, docking;8.63379942417811e-05!GO:0006352;transcription initiation;8.71993586563611e-05!GO:0043021;ribonucleoprotein binding;9.37924189589937e-05!GO:0016741;transferase activity, transferring one-carbon groups;0.000104064947444739!GO:0006302;double-strand break repair;0.000113283103691015!GO:0003729;mRNA binding;0.0001193113564593!GO:0045786;negative regulation of progression through cell cycle;0.000134504260546275!GO:0008168;methyltransferase activity;0.000139149491366175!GO:0005048;signal sequence binding;0.000139149491366175!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000147996314175452!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000150500922884439!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000152721225276645!GO:0006310;DNA recombination;0.000175710036537175!GO:0051052;regulation of DNA metabolic process;0.000178087225122584!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000182176762190083!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000187423237981959!GO:0006793;phosphorus metabolic process;0.000190486871303262!GO:0006796;phosphate metabolic process;0.000190486871303262!GO:0048471;perinuclear region of cytoplasm;0.000190610593409825!GO:0000049;tRNA binding;0.000192005695273345!GO:0031968;organelle outer membrane;0.000204949749870445!GO:0008186;RNA-dependent ATPase activity;0.000209377757133407!GO:0051325;interphase;0.000211154967574189!GO:0019752;carboxylic acid metabolic process;0.000215301691603702!GO:0006082;organic acid metabolic process;0.000218477898909375!GO:0007051;spindle organization and biogenesis;0.000235043199043314!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000247259182546776!GO:0000075;cell cycle checkpoint;0.000274176854068734!GO:0019222;regulation of metabolic process;0.000274954985724126!GO:0033116;ER-Golgi intermediate compartment membrane;0.000330987042432434!GO:0019867;outer membrane;0.000338504538018158!GO:0003682;chromatin binding;0.000339497804081259!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000345115188583312!GO:0000139;Golgi membrane;0.000354312025631663!GO:0016564;transcription repressor activity;0.000360200979755197!GO:0031072;heat shock protein binding;0.000370326655327557!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0003759811155822!GO:0003678;DNA helicase activity;0.000376425907876839!GO:0009165;nucleotide biosynthetic process;0.000398135004244937!GO:0005769;early endosome;0.000398502120643675!GO:0050789;regulation of biological process;0.000398502120643675!GO:0046474;glycerophospholipid biosynthetic process;0.000401973817644664!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000409679336012229!GO:0009112;nucleobase metabolic process;0.000417673747077579!GO:0016251;general RNA polymerase II transcription factor activity;0.000421866597165333!GO:0016310;phosphorylation;0.000434830934169408!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000439754402056478!GO:0046489;phosphoinositide biosynthetic process;0.000479207878015109!GO:0006402;mRNA catabolic process;0.000495264146094482!GO:0006520;amino acid metabolic process;0.000496270226949818!GO:0006839;mitochondrial transport;0.00051326552869528!GO:0065009;regulation of a molecular function;0.000520495120312687!GO:0000096;sulfur amino acid metabolic process;0.000525399680949453!GO:0005885;Arp2/3 protein complex;0.000549144380435758!GO:0043681;protein import into mitochondrion;0.000556873114718028!GO:0004004;ATP-dependent RNA helicase activity;0.000588756734371984!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000601725606960535!GO:0005874;microtubule;0.000621334985107438!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000625961707534427!GO:0031252;leading edge;0.000628530856299317!GO:0032508;DNA duplex unwinding;0.000653104107698279!GO:0032392;DNA geometric change;0.000653104107698279!GO:0006383;transcription from RNA polymerase III promoter;0.000678931485769958!GO:0051789;response to protein stimulus;0.000698813134517779!GO:0006986;response to unfolded protein;0.000698813134517779!GO:0007006;mitochondrial membrane organization and biogenesis;0.000699935071435006!GO:0051920;peroxiredoxin activity;0.00072768483186066!GO:0043492;ATPase activity, coupled to movement of substances;0.000754717523993622!GO:0015992;proton transport;0.000772417281393556!GO:0005741;mitochondrial outer membrane;0.000822195892977726!GO:0006818;hydrogen transport;0.000843321735407497!GO:0009116;nucleoside metabolic process;0.000930521670730669!GO:0003684;damaged DNA binding;0.00101882434255462!GO:0006695;cholesterol biosynthetic process;0.00102009565199148!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00102485480314486!GO:0016126;sterol biosynthetic process;0.00115684949051558!GO:0003746;translation elongation factor activity;0.00117092963042987!GO:0006891;intra-Golgi vesicle-mediated transport;0.00117505007008361!GO:0006401;RNA catabolic process;0.00118050221807099!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00121451370751742!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00121451370751742!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00121451370751742!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00124545968999534!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00129589581758552!GO:0051087;chaperone binding;0.00141636514669929!GO:0000786;nucleosome;0.00145110101369422!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00146231775458647!GO:0031324;negative regulation of cellular metabolic process;0.00146231775458647!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00147444120115326!GO:0046467;membrane lipid biosynthetic process;0.00147444120115326!GO:0051540;metal cluster binding;0.00179860669246397!GO:0051536;iron-sulfur cluster binding;0.00179860669246397!GO:0009892;negative regulation of metabolic process;0.00180244184339138!GO:0005774;vacuolar membrane;0.0019040645348213!GO:0042802;identical protein binding;0.00196143372124054!GO:0044262;cellular carbohydrate metabolic process;0.00196307748637704!GO:0032200;telomere organization and biogenesis;0.00199377856495438!GO:0000723;telomere maintenance;0.00199377856495438!GO:0030880;RNA polymerase complex;0.00201562340241334!GO:0030133;transport vesicle;0.00215546263542953!GO:0051539;4 iron, 4 sulfur cluster binding;0.00215984276007217!GO:0000776;kinetochore;0.00221739553743007!GO:0006650;glycerophospholipid metabolic process;0.00222969883077114!GO:0016044;membrane organization and biogenesis;0.00228014185218154!GO:0006497;protein amino acid lipidation;0.00234966159124712!GO:0006268;DNA unwinding during replication;0.00239199134521247!GO:0022890;inorganic cation transmembrane transporter activity;0.00244772670196753!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00246967154614303!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00246967154614303!GO:0031970;organelle envelope lumen;0.0024959847723736!GO:0008652;amino acid biosynthetic process;0.0024959847723736!GO:0003714;transcription corepressor activity;0.00253040487608059!GO:0043284;biopolymer biosynthetic process;0.00253401346156384!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00255809621314105!GO:0006275;regulation of DNA replication;0.00261577051362662!GO:0006405;RNA export from nucleus;0.00269121333074549!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00269586465775767!GO:0015631;tubulin binding;0.00269873969787384!GO:0003711;transcription elongation regulator activity;0.0027052557322627!GO:0019843;rRNA binding;0.00287064721723333!GO:0005758;mitochondrial intermembrane space;0.00289739387220913!GO:0006289;nucleotide-excision repair;0.00290756342195097!GO:0045045;secretory pathway;0.00292953669372786!GO:0048500;signal recognition particle;0.00302564153636479!GO:0008139;nuclear localization sequence binding;0.00305406026879941!GO:0006505;GPI anchor metabolic process;0.00305652781221347!GO:0045941;positive regulation of transcription;0.00315776160078448!GO:0004518;nuclease activity;0.00334408929692365!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00345292211067228!GO:0051252;regulation of RNA metabolic process;0.00351098939643134!GO:0030663;COPI coated vesicle membrane;0.00351098939643134!GO:0030126;COPI vesicle coat;0.00351098939643134!GO:0051287;NAD binding;0.00358132471638398!GO:0031902;late endosome membrane;0.00358341011350985!GO:0030867;rough endoplasmic reticulum membrane;0.00379456345823102!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00379456345823102!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00379456345823102!GO:0015002;heme-copper terminal oxidase activity;0.00379456345823102!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00379456345823102!GO:0004129;cytochrome-c oxidase activity;0.00379456345823102!GO:0005905;coated pit;0.00385664317454907!GO:0009451;RNA modification;0.00393302944657499!GO:0009081;branched chain family amino acid metabolic process;0.00401190281106386!GO:0006740;NADPH regeneration;0.00403117685717257!GO:0006098;pentose-phosphate shunt;0.00403117685717257!GO:0008312;7S RNA binding;0.00408851500028018!GO:0007034;vacuolar transport;0.00408851500028018!GO:0007088;regulation of mitosis;0.00419214690967597!GO:0006506;GPI anchor biosynthetic process;0.00419214690967597!GO:0030137;COPI-coated vesicle;0.00419214690967597!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00419417923560292!GO:0000428;DNA-directed RNA polymerase complex;0.00419417923560292!GO:0008632;apoptotic program;0.00420847096861672!GO:0006144;purine base metabolic process;0.00426471177101168!GO:0044437;vacuolar part;0.0044583933500753!GO:0007040;lysosome organization and biogenesis;0.00465294045929753!GO:0007017;microtubule-based process;0.00475928112100115!GO:0035258;steroid hormone receptor binding;0.00482428166616121!GO:0007093;mitotic cell cycle checkpoint;0.00492302074462138!GO:0006611;protein export from nucleus;0.0050821011986127!GO:0005684;U2-dependent spliceosome;0.00523494506171403!GO:0006778;porphyrin metabolic process;0.00531120817186463!GO:0033013;tetrapyrrole metabolic process;0.00531120817186463!GO:0004527;exonuclease activity;0.00535424425430756!GO:0005637;nuclear inner membrane;0.00535424425430756!GO:0005669;transcription factor TFIID complex;0.00545852490565163!GO:0008234;cysteine-type peptidase activity;0.00551872672479765!GO:0030384;phosphoinositide metabolic process;0.00553587937607929!GO:0045893;positive regulation of transcription, DNA-dependent;0.00560285145675064!GO:0008022;protein C-terminus binding;0.00590472975542959!GO:0016197;endosome transport;0.00605552803034068!GO:0032259;methylation;0.00606224016694197!GO:0030132;clathrin coat of coated pit;0.00618633726502245!GO:0030118;clathrin coat;0.00618653587837927!GO:0007052;mitotic spindle organization and biogenesis;0.00626986322945416!GO:0005765;lysosomal membrane;0.00629494507939879!GO:0006284;base-excision repair;0.00637321988066637!GO:0016272;prefoldin complex;0.00649869548752055!GO:0000781;chromosome, telomeric region;0.0065972810966356!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00672541246838688!GO:0045047;protein targeting to ER;0.00672541246838688!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0068964756297249!GO:0046983;protein dimerization activity;0.00706529852113466!GO:0008180;signalosome;0.00712665535048186!GO:0006007;glucose catabolic process;0.0071937842545497!GO:0042158;lipoprotein biosynthetic process;0.0072163004651974!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0072163004651974!GO:0043022;ribosome binding;0.00730677648944894!GO:0031625;ubiquitin protein ligase binding;0.0073769444879191!GO:0030521;androgen receptor signaling pathway;0.0073769444879191!GO:0006672;ceramide metabolic process;0.00738076859250469!GO:0031124;mRNA 3'-end processing;0.00738076859250469!GO:0000097;sulfur amino acid biosynthetic process;0.00738076859250469!GO:0006519;amino acid and derivative metabolic process;0.00752439450773594!GO:0016407;acetyltransferase activity;0.00757776748445365!GO:0007021;tubulin folding;0.00760832772056955!GO:0043414;biopolymer methylation;0.00768707967947089!GO:0046112;nucleobase biosynthetic process;0.00797360664687044!GO:0000922;spindle pole;0.00799676150006384!GO:0006220;pyrimidine nucleotide metabolic process;0.00806923586638078!GO:0007264;small GTPase mediated signal transduction;0.00818662906512337!GO:0046966;thyroid hormone receptor binding;0.00819532115865677!GO:0030658;transport vesicle membrane;0.00819532115865677!GO:0006338;chromatin remodeling;0.00851748430698393!GO:0008017;microtubule binding;0.00861136148390788!GO:0046519;sphingoid metabolic process;0.00873243976374782!GO:0008637;apoptotic mitochondrial changes;0.00889714398879441!GO:0000792;heterochromatin;0.00908975740766489!GO:0000339;RNA cap binding;0.00913111356612541!GO:0007033;vacuole organization and biogenesis;0.00916097155492731!GO:0006509;membrane protein ectodomain proteolysis;0.00916097155492731!GO:0033619;membrane protein proteolysis;0.00916097155492731!GO:0007010;cytoskeleton organization and biogenesis;0.00938610575266504!GO:0005832;chaperonin-containing T-complex;0.00957196338712519!GO:0003756;protein disulfide isomerase activity;0.00962252020014386!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00962252020014386!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00963689061948531!GO:0007004;telomere maintenance via telomerase;0.00974242804768916!GO:0043488;regulation of mRNA stability;0.00981911576348619!GO:0043487;regulation of RNA stability;0.00981911576348619!GO:0006730;one-carbon compound metabolic process;0.0101898575393896!GO:0008610;lipid biosynthetic process;0.0102241761922142!GO:0043624;cellular protein complex disassembly;0.0103036162955748!GO:0006779;porphyrin biosynthetic process;0.0103036162955748!GO:0033014;tetrapyrrole biosynthetic process;0.0103036162955748!GO:0006376;mRNA splice site selection;0.0103036162955748!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0103036162955748!GO:0006400;tRNA modification;0.0103859481696396!GO:0048487;beta-tubulin binding;0.0105093747215242!GO:0012506;vesicle membrane;0.010538196018721!GO:0005876;spindle microtubule;0.0106737375475693!GO:0006807;nitrogen compound metabolic process;0.0107143376935364!GO:0030176;integral to endoplasmic reticulum membrane;0.0109013868545294!GO:0016584;nucleosome positioning;0.0110167977942312!GO:0016481;negative regulation of transcription;0.0110174487090123!GO:0006595;polyamine metabolic process;0.0118148621882099!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0118562660889733!GO:0006892;post-Golgi vesicle-mediated transport;0.0119003970530229!GO:0008408;3'-5' exonuclease activity;0.012114591744095!GO:0008415;acyltransferase activity;0.0122408871427841!GO:0031529;ruffle organization and biogenesis;0.01240085427925!GO:0006378;mRNA polyadenylation;0.0126356208884083!GO:0050790;regulation of catalytic activity;0.0126586072409442!GO:0000228;nuclear chromosome;0.0129268977801432!GO:0046128;purine ribonucleoside metabolic process;0.0129861267337356!GO:0042278;purine nucleoside metabolic process;0.0129861267337356!GO:0044433;cytoplasmic vesicle part;0.0129910109006874!GO:0035267;NuA4 histone acetyltransferase complex;0.0132983721651713!GO:0042168;heme metabolic process;0.0133027319605176!GO:0043189;H4/H2A histone acetyltransferase complex;0.013305667194463!GO:0030125;clathrin vesicle coat;0.0134621659419635!GO:0030665;clathrin coated vesicle membrane;0.0134621659419635!GO:0005777;peroxisome;0.0134687094153928!GO:0042579;microbody;0.0134687094153928!GO:0030660;Golgi-associated vesicle membrane;0.0136532451486145!GO:0009083;branched chain family amino acid catabolic process;0.0139788999568104!GO:0031323;regulation of cellular metabolic process;0.0142383596687371!GO:0030659;cytoplasmic vesicle membrane;0.0148612065336218!GO:0030119;AP-type membrane coat adaptor complex;0.0149927980682935!GO:0000209;protein polyubiquitination;0.0153774617394155!GO:0019783;small conjugating protein-specific protease activity;0.0153921015751094!GO:0007059;chromosome segregation;0.0154624712771776!GO:0030569;chymotrypsin inhibitor activity;0.0155659647120748!GO:0009308;amine metabolic process;0.0156088241576417!GO:0009303;rRNA transcription;0.0156088241576417!GO:0051098;regulation of binding;0.0156805933529615!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0161601919031522!GO:0017166;vinculin binding;0.0161764833502788!GO:0003702;RNA polymerase II transcription factor activity;0.0162444714412736!GO:0051128;regulation of cellular component organization and biogenesis;0.0164396100162296!GO:0009066;aspartate family amino acid metabolic process;0.0164826019325314!GO:0008097;5S rRNA binding;0.0165370333511116!GO:0048522;positive regulation of cellular process;0.016968873868081!GO:0006367;transcription initiation from RNA polymerase II promoter;0.017022375748099!GO:0030027;lamellipodium;0.0171344208314823!GO:0032984;macromolecular complex disassembly;0.0171605079355704!GO:0006360;transcription from RNA polymerase I promoter;0.0172486335990683!GO:0030134;ER to Golgi transport vesicle;0.0174638074829157!GO:0016790;thiolester hydrolase activity;0.0178600131878691!GO:0006739;NADP metabolic process;0.0180496318515155!GO:0048468;cell development;0.0180789978101927!GO:0042393;histone binding;0.0181985209918145!GO:0006350;transcription;0.018429723409557!GO:0004843;ubiquitin-specific protease activity;0.0184415545933051!GO:0000123;histone acetyltransferase complex;0.0185757372021865!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0191681456013974!GO:0008320;protein transmembrane transporter activity;0.0193056526480092!GO:0008250;oligosaccharyl transferase complex;0.0193161234661454!GO:0004674;protein serine/threonine kinase activity;0.0194870452210142!GO:0007050;cell cycle arrest;0.0195143346464531!GO:0043596;nuclear replication fork;0.0195863331910218!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0197995290996629!GO:0016408;C-acyltransferase activity;0.0202732310775816!GO:0016746;transferase activity, transferring acyl groups;0.020294408126432!GO:0043407;negative regulation of MAP kinase activity;0.0203834008480418!GO:0009070;serine family amino acid biosynthetic process;0.0204777311005585!GO:0042770;DNA damage response, signal transduction;0.02051031147493!GO:0008361;regulation of cell size;0.0207255415778619!GO:0000178;exosome (RNase complex);0.0209922448227435!GO:0007041;lysosomal transport;0.0209922448227435!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0212851703193617!GO:0000726;non-recombinational repair;0.0214324731309705!GO:0022884;macromolecule transmembrane transporter activity;0.0215359884949312!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0215359884949312!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0219305712433425!GO:0006278;RNA-dependent DNA replication;0.0220101813836103!GO:0030508;thiol-disulfide exchange intermediate activity;0.0223832130801358!GO:0004532;exoribonuclease activity;0.0226159334006688!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0226159334006688!GO:0030131;clathrin adaptor complex;0.0230861688454924!GO:0031123;RNA 3'-end processing;0.0237452089188018!GO:0003725;double-stranded RNA binding;0.0238295983906665!GO:0009067;aspartate family amino acid biosynthetic process;0.0239333310494544!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0240257249769388!GO:0004576;oligosaccharyl transferase activity;0.0240982985009802!GO:0000082;G1/S transition of mitotic cell cycle;0.0242789536610144!GO:0006643;membrane lipid metabolic process;0.0244989396707538!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0250634768261365!GO:0006118;electron transport;0.0252527166458075!GO:0043241;protein complex disassembly;0.025378241924477!GO:0009119;ribonucleoside metabolic process;0.0255481548923751!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0256358874149435!GO:0006783;heme biosynthetic process;0.0257452815117182!GO:0006458;'de novo' protein folding;0.0265312159251105!GO:0051084;'de novo' posttranslational protein folding;0.0265312159251105!GO:0030496;midbody;0.0267391457180745!GO:0006897;endocytosis;0.0268566489718711!GO:0010324;membrane invagination;0.0268566489718711!GO:0004300;enoyl-CoA hydratase activity;0.0271442957632326!GO:0009124;nucleoside monophosphate biosynthetic process;0.0275718744404799!GO:0009123;nucleoside monophosphate metabolic process;0.0275718744404799!GO:0005791;rough endoplasmic reticulum;0.0276892449146977!GO:0008538;proteasome activator activity;0.028371719506827!GO:0051101;regulation of DNA binding;0.028513099232466!GO:0004221;ubiquitin thiolesterase activity;0.0286175066834018!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0287832287534258!GO:0032940;secretion by cell;0.0304601331321243!GO:0008276;protein methyltransferase activity;0.0307424492883648!GO:0040029;regulation of gene expression, epigenetic;0.0310885163274121!GO:0033673;negative regulation of kinase activity;0.0319453418576353!GO:0006469;negative regulation of protein kinase activity;0.0319453418576353!GO:0065007;biological regulation;0.0321654625906878!GO:0051348;negative regulation of transferase activity;0.032685260213541!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0339653644052374!GO:0010257;NADH dehydrogenase complex assembly;0.0339653644052374!GO:0033108;mitochondrial respiratory chain complex assembly;0.0339653644052374!GO:0046365;monosaccharide catabolic process;0.0346402595717213!GO:0005784;translocon complex;0.0357468086047719!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0360370312296525!GO:0050681;androgen receptor binding;0.0360623446783835!GO:0018196;peptidyl-asparagine modification;0.0362532765528136!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0362532765528136!GO:0022406;membrane docking;0.0377736487578843!GO:0048278;vesicle docking;0.0377736487578843!GO:0022411;cellular component disassembly;0.0377950534212621!GO:0006564;L-serine biosynthetic process;0.0377950534212621!GO:0051053;negative regulation of DNA metabolic process;0.0380837025427497!GO:0046164;alcohol catabolic process;0.038129722472!GO:0030518;steroid hormone receptor signaling pathway;0.0381543697964437!GO:0006950;response to stress;0.0383510703901244!GO:0030127;COPII vesicle coat;0.0391171162228524!GO:0012507;ER to Golgi transport vesicle membrane;0.0391171162228524!GO:0005732;small nucleolar ribonucleoprotein complex;0.0393228177464698!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0394352220617981!GO:0046982;protein heterodimerization activity;0.0394509299373565!GO:0004003;ATP-dependent DNA helicase activity;0.0395893139443861!GO:0000725;recombinational repair;0.0410164485802429!GO:0000724;double-strand break repair via homologous recombination;0.0410164485802429!GO:0030433;ER-associated protein catabolic process;0.0410218105292822!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0410218105292822!GO:0005869;dynactin complex;0.0418302306469701!GO:0004563;beta-N-acetylhexosaminidase activity;0.0421441312377553!GO:0017134;fibroblast growth factor binding;0.0428239082621697!GO:0031461;cullin-RING ubiquitin ligase complex;0.0428826053974797!GO:0000152;nuclear ubiquitin ligase complex;0.0428891643489284!GO:0009161;ribonucleoside monophosphate metabolic process;0.043189063846926!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.043189063846926!GO:0042982;amyloid precursor protein metabolic process;0.043189063846926!GO:0000287;magnesium ion binding;0.0439898131965862!GO:0016860;intramolecular oxidoreductase activity;0.0439898131965862!GO:0031570;DNA integrity checkpoint;0.0440334958849686!GO:0016049;cell growth;0.0441410131836997!GO:0006417;regulation of translation;0.044454695984257!GO:0005663;DNA replication factor C complex;0.0449871322262222!GO:0006635;fatty acid beta-oxidation;0.0450118637686529!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0456138408558644!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0456138408558644!GO:0006563;L-serine metabolic process;0.0456565034831573!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0458952089444169!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0459220739981699!GO:0031371;ubiquitin conjugating enzyme complex;0.0460436270084694!GO:0004680;casein kinase activity;0.0461871559929938!GO:0006644;phospholipid metabolic process;0.0465408828010498!GO:0019377;glycolipid catabolic process;0.0465955768540989!GO:0000118;histone deacetylase complex;0.0466357007361833!GO:0051881;regulation of mitochondrial membrane potential;0.0466609897262733!GO:0006749;glutathione metabolic process;0.0472269688418416!GO:0042026;protein refolding;0.0476150959734449!GO:0044450;microtubule organizing center part;0.0478903006438978!GO:0001726;ruffle;0.048558058364199!GO:0006914;autophagy;0.0491850810934178 | |||
|sample_id=10488 | |sample_id=10488 | ||
|sample_note= | |sample_note= | ||
Line 76: | Line 102: | ||
|sample_tissue=pancreas | |sample_tissue=pancreas | ||
|top_motifs=HOX{A6,A7,B6,B7}:1.95190508295;ELK1,4_GABP{A,B1}:1.43745812398;NRF1:1.43042669984;bHLH_family:1.33002134819;PITX1..3:1.21246977674;PPARG:1.11175751849;FOXD3:1.10164209458;PBX1:0.988853923558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.905734967422;YY1:0.880255494594;ZNF143:0.778000029843;ONECUT1,2:0.728395637961;NKX6-1,2:0.721555067605;SREBF1,2:0.713519947055;FOXQ1:0.652507201094;FOXP1:0.640628212929;TEF:0.60437322177;LHX3,4:0.603547746772;STAT5{A,B}:0.539210236446;RORA:0.499462181835;MYB:0.488793251069;CRX:0.47212911601;NKX2-1,4:0.457700081194;RFX1:0.456334078834;E2F1..5:0.439614829376;ZBTB16:0.420733060306;AIRE:0.413416246442;RFX2..5_RFXANK_RFXAP:0.383590738242;EN1,2:0.372741901738;FOXA2:0.371995849603;TOPORS:0.34308099473;TFDP1:0.310256167829;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.296279485556;CEBPA,B_DDIT3:0.284561227782;HOX{A4,D4}:0.268363255287;HOX{A5,B5}:0.266848022714;CDX1,2,4:0.257069112683;RXR{A,B,G}:0.243747811355;CREB1:0.216511164224;POU1F1:0.215697056521;PAX8:0.206548341016;PAX5:0.20422031138;PRRX1,2:0.196318571926;REST:0.189995760127;ATF5_CREB3:0.164156070186;PAX1,9:0.162866237016;DMAP1_NCOR{1,2}_SMARC:0.154776284353;ZBTB6:0.126249233703;LEF1_TCF7_TCF7L1,2:0.115730730754;BPTF:0.113727371019;ELF1,2,4:0.0977711959673;OCT4_SOX2{dimer}:0.0908572882433;NANOG:0.0874576699582;PDX1:0.0770210758844;RBPJ:0.0752712642143;NKX2-3_NKX2-5:0.0738954331139;NR3C1:0.072914188769;GFI1:0.0703917086256;GATA4:0.0694086526247;ATF4:0.0611522382018;HNF4A_NR2F1,2:0.055288639731;FOXN1:0.0481342304081;SNAI1..3:0.0475720919016;ARID5B:0.0450828294579;NFE2L1:0.0405708947188;EGR1..3:0.0396570477925;LMO2:0.0198883397353;RXRA_VDR{dimer}:0.015156641112;NR6A1:-0.0175407983295;UFEwm:-0.0192128162991;PAX4:-0.0201156409444;FOX{I1,J2}:-0.0210819482061;MTF1:-0.0262992360147;TP53:-0.0381812829799;ZNF384:-0.0420734141973;CDC5L:-0.0443758417946;NKX3-2:-0.0458914593157;ALX4:-0.0569181066917;HIF1A:-0.073039268279;FOS_FOS{B,L1}_JUN{B,D}:-0.0752420164684;ZIC1..3:-0.0835152755993;NFE2:-0.0883040148602;TEAD1:-0.0986147455309;EVI1:-0.0993101750106;NFY{A,B,C}:-0.107534630872;BACH2:-0.110176201911;SRF:-0.145351668722;FOXO1,3,4:-0.152872004738;SP1:-0.15370527716;FOXM1:-0.156052274037;FOX{D1,D2}:-0.160998640529;IKZF2:-0.162908895909;GLI1..3:-0.169575302371;GTF2A1,2:-0.175083808981;HLF:-0.183592885718;ALX1:-0.183608130057;HSF1,2:-0.196125634033;RREB1:-0.19723007641;ADNP_IRX_SIX_ZHX:-0.197700946792;HES1:-0.200078695987;HOXA9_MEIS1:-0.208097596641;SOX{8,9,10}:-0.210344613627;POU2F1..3:-0.218655308722;ESRRA:-0.220465974501;PAX2:-0.226714025074;XCPE1{core}:-0.228844855459;MED-1{core}:-0.231260626191;KLF4:-0.235362905212;FOSL2:-0.239995209663;AHR_ARNT_ARNT2:-0.247517540055;NR5A1,2:-0.252740621095;NFIL3:-0.288916366172;HNF1A:-0.301595533014;ZFP161:-0.302924775322;ZEB1:-0.30402223873;TFCP2:-0.312181028578;NHLH1,2:-0.327267774097;MYOD1:-0.339616550642;NFKB1_REL_RELA:-0.346652429819;GATA6:-0.364943256839;FOXL1:-0.366067162061;MEF2{A,B,C,D}:-0.389379684777;ZNF148:-0.398149380225;SOX17:-0.400025047347;JUN:-0.409242614607;STAT1,3:-0.426999243493;MYBL2:-0.430162016314;SPIB:-0.439143524421;DBP:-0.444989438183;BREu{core}:-0.453244304481;NKX2-2,8:-0.462466543706;STAT2,4,6:-0.46253237816;CUX2:-0.481405018108;FOXP3:-0.491839647417;SPI1:-0.505386849186;PAX3,7:-0.513926086134;MAFB:-0.522085361877;RUNX1..3:-0.522768418116;IRF1,2:-0.52785726653;SOX5:-0.534201916919;NFATC1..3:-0.535906640757;HIC1:-0.537142805971;NFE2L2:-0.560518282404;POU5F1:-0.5648185033;HBP1_HMGB_SSRP1_UBTF:-0.57228598043;NR1H4:-0.575276371989;NKX3-1:-0.585776981288;TFAP2B:-0.591606693235;VSX1,2:-0.592742315459;ESR1:-0.598436156957;GTF2I:-0.605795003527;IRF7:-0.609913021594;PRDM1:-0.613510440418;EBF1:-0.614827362667;POU6F1:-0.635197040351;T:-0.656014676658;NANOG{mouse}:-0.660927810196;SOX2:-0.6741383661;HMGA1,2:-0.685999096234;GZF1:-0.686015736194;GFI1B:-0.691369175407;HAND1,2:-0.712768919647;AR:-0.720809101372;ETS1,2:-0.730591322906;PAX6:-0.737769276748;FOX{F1,F2,J1}:-0.739385528775;TFAP2{A,C}:-0.776583815252;PATZ1:-0.794987599567;IKZF1:-0.801330877386;TAL1_TCF{3,4,12}:-0.830768486456;TLX1..3_NFIC{dimer}:-0.848639077556;XBP1:-0.854056022103;POU3F1..4:-0.862261223993;MAZ:-0.876658550666;ZNF423:-0.87941809687;EP300:-0.921264718206;MYFfamily:-0.933585347607;MZF1:-0.94924204687;ATF2:-0.982712829714;NFIX:-1.00000149187;MTE{core}:-1.00406899633;ATF6:-1.0338715383;TGIF1:-1.05762484408;GCM1,2:-1.11835964182;TBP:-1.19308652112;TLX2:-1.25465614514;TBX4,5:-1.34536184529;TFAP4:-1.50414622116;SMAD1..7,9:-1.63733549201;HMX1:-1.69999670986;SPZ1:-1.97576457056;ZNF238:-2.45630865447 | |top_motifs=HOX{A6,A7,B6,B7}:1.95190508295;ELK1,4_GABP{A,B1}:1.43745812398;NRF1:1.43042669984;bHLH_family:1.33002134819;PITX1..3:1.21246977674;PPARG:1.11175751849;FOXD3:1.10164209458;PBX1:0.988853923558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.905734967422;YY1:0.880255494594;ZNF143:0.778000029843;ONECUT1,2:0.728395637961;NKX6-1,2:0.721555067605;SREBF1,2:0.713519947055;FOXQ1:0.652507201094;FOXP1:0.640628212929;TEF:0.60437322177;LHX3,4:0.603547746772;STAT5{A,B}:0.539210236446;RORA:0.499462181835;MYB:0.488793251069;CRX:0.47212911601;NKX2-1,4:0.457700081194;RFX1:0.456334078834;E2F1..5:0.439614829376;ZBTB16:0.420733060306;AIRE:0.413416246442;RFX2..5_RFXANK_RFXAP:0.383590738242;EN1,2:0.372741901738;FOXA2:0.371995849603;TOPORS:0.34308099473;TFDP1:0.310256167829;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.296279485556;CEBPA,B_DDIT3:0.284561227782;HOX{A4,D4}:0.268363255287;HOX{A5,B5}:0.266848022714;CDX1,2,4:0.257069112683;RXR{A,B,G}:0.243747811355;CREB1:0.216511164224;POU1F1:0.215697056521;PAX8:0.206548341016;PAX5:0.20422031138;PRRX1,2:0.196318571926;REST:0.189995760127;ATF5_CREB3:0.164156070186;PAX1,9:0.162866237016;DMAP1_NCOR{1,2}_SMARC:0.154776284353;ZBTB6:0.126249233703;LEF1_TCF7_TCF7L1,2:0.115730730754;BPTF:0.113727371019;ELF1,2,4:0.0977711959673;OCT4_SOX2{dimer}:0.0908572882433;NANOG:0.0874576699582;PDX1:0.0770210758844;RBPJ:0.0752712642143;NKX2-3_NKX2-5:0.0738954331139;NR3C1:0.072914188769;GFI1:0.0703917086256;GATA4:0.0694086526247;ATF4:0.0611522382018;HNF4A_NR2F1,2:0.055288639731;FOXN1:0.0481342304081;SNAI1..3:0.0475720919016;ARID5B:0.0450828294579;NFE2L1:0.0405708947188;EGR1..3:0.0396570477925;LMO2:0.0198883397353;RXRA_VDR{dimer}:0.015156641112;NR6A1:-0.0175407983295;UFEwm:-0.0192128162991;PAX4:-0.0201156409444;FOX{I1,J2}:-0.0210819482061;MTF1:-0.0262992360147;TP53:-0.0381812829799;ZNF384:-0.0420734141973;CDC5L:-0.0443758417946;NKX3-2:-0.0458914593157;ALX4:-0.0569181066917;HIF1A:-0.073039268279;FOS_FOS{B,L1}_JUN{B,D}:-0.0752420164684;ZIC1..3:-0.0835152755993;NFE2:-0.0883040148602;TEAD1:-0.0986147455309;EVI1:-0.0993101750106;NFY{A,B,C}:-0.107534630872;BACH2:-0.110176201911;SRF:-0.145351668722;FOXO1,3,4:-0.152872004738;SP1:-0.15370527716;FOXM1:-0.156052274037;FOX{D1,D2}:-0.160998640529;IKZF2:-0.162908895909;GLI1..3:-0.169575302371;GTF2A1,2:-0.175083808981;HLF:-0.183592885718;ALX1:-0.183608130057;HSF1,2:-0.196125634033;RREB1:-0.19723007641;ADNP_IRX_SIX_ZHX:-0.197700946792;HES1:-0.200078695987;HOXA9_MEIS1:-0.208097596641;SOX{8,9,10}:-0.210344613627;POU2F1..3:-0.218655308722;ESRRA:-0.220465974501;PAX2:-0.226714025074;XCPE1{core}:-0.228844855459;MED-1{core}:-0.231260626191;KLF4:-0.235362905212;FOSL2:-0.239995209663;AHR_ARNT_ARNT2:-0.247517540055;NR5A1,2:-0.252740621095;NFIL3:-0.288916366172;HNF1A:-0.301595533014;ZFP161:-0.302924775322;ZEB1:-0.30402223873;TFCP2:-0.312181028578;NHLH1,2:-0.327267774097;MYOD1:-0.339616550642;NFKB1_REL_RELA:-0.346652429819;GATA6:-0.364943256839;FOXL1:-0.366067162061;MEF2{A,B,C,D}:-0.389379684777;ZNF148:-0.398149380225;SOX17:-0.400025047347;JUN:-0.409242614607;STAT1,3:-0.426999243493;MYBL2:-0.430162016314;SPIB:-0.439143524421;DBP:-0.444989438183;BREu{core}:-0.453244304481;NKX2-2,8:-0.462466543706;STAT2,4,6:-0.46253237816;CUX2:-0.481405018108;FOXP3:-0.491839647417;SPI1:-0.505386849186;PAX3,7:-0.513926086134;MAFB:-0.522085361877;RUNX1..3:-0.522768418116;IRF1,2:-0.52785726653;SOX5:-0.534201916919;NFATC1..3:-0.535906640757;HIC1:-0.537142805971;NFE2L2:-0.560518282404;POU5F1:-0.5648185033;HBP1_HMGB_SSRP1_UBTF:-0.57228598043;NR1H4:-0.575276371989;NKX3-1:-0.585776981288;TFAP2B:-0.591606693235;VSX1,2:-0.592742315459;ESR1:-0.598436156957;GTF2I:-0.605795003527;IRF7:-0.609913021594;PRDM1:-0.613510440418;EBF1:-0.614827362667;POU6F1:-0.635197040351;T:-0.656014676658;NANOG{mouse}:-0.660927810196;SOX2:-0.6741383661;HMGA1,2:-0.685999096234;GZF1:-0.686015736194;GFI1B:-0.691369175407;HAND1,2:-0.712768919647;AR:-0.720809101372;ETS1,2:-0.730591322906;PAX6:-0.737769276748;FOX{F1,F2,J1}:-0.739385528775;TFAP2{A,C}:-0.776583815252;PATZ1:-0.794987599567;IKZF1:-0.801330877386;TAL1_TCF{3,4,12}:-0.830768486456;TLX1..3_NFIC{dimer}:-0.848639077556;XBP1:-0.854056022103;POU3F1..4:-0.862261223993;MAZ:-0.876658550666;ZNF423:-0.87941809687;EP300:-0.921264718206;MYFfamily:-0.933585347607;MZF1:-0.94924204687;ATF2:-0.982712829714;NFIX:-1.00000149187;MTE{core}:-1.00406899633;ATF6:-1.0338715383;TGIF1:-1.05762484408;GCM1,2:-1.11835964182;TBP:-1.19308652112;TLX2:-1.25465614514;TBX4,5:-1.34536184529;TFAP4:-1.50414622116;SMAD1..7,9:-1.63733549201;HMX1:-1.69999670986;SPZ1:-1.97576457056;ZNF238:-2.45630865447 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10488-107B2;search_select_hide=table117:FF:10488-107B2 | |||
}} | }} |
Latest revision as of 14:26, 3 June 2020
Name: | ductal cell carcinoma cell line:MIA Paca2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11259 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11259
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11259
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.426 |
10 | 10 | 0.244 |
100 | 100 | 0.031 |
101 | 101 | 0.638 |
102 | 102 | 0.652 |
103 | 103 | 0.304 |
104 | 104 | 0.539 |
105 | 105 | 0.631 |
106 | 106 | 1.34347e-4 |
107 | 107 | 0.00902 |
108 | 108 | 0.873 |
109 | 109 | 0.167 |
11 | 11 | 0.792 |
110 | 110 | 0.673 |
111 | 111 | 0.707 |
112 | 112 | 0.675 |
113 | 113 | 0.0265 |
114 | 114 | 0.752 |
115 | 115 | 0.726 |
116 | 116 | 0.946 |
117 | 117 | 0.0774 |
118 | 118 | 0.183 |
119 | 119 | 0.145 |
12 | 12 | 0.233 |
120 | 120 | 0.381 |
121 | 121 | 0.737 |
122 | 122 | 0.879 |
123 | 123 | 0.245 |
124 | 124 | 0.0962 |
125 | 125 | 0.899 |
126 | 126 | 0.905 |
127 | 127 | 0.565 |
128 | 128 | 7.94282e-4 |
129 | 129 | 0.484 |
13 | 13 | 0.00242 |
130 | 130 | 0.341 |
131 | 131 | 0.558 |
132 | 132 | 0.631 |
133 | 133 | 0.359 |
134 | 134 | 0.463 |
135 | 135 | 5.48211e-4 |
136 | 136 | 0.219 |
137 | 137 | 0.382 |
138 | 138 | 0.805 |
139 | 139 | 0.7 |
14 | 14 | 0.841 |
140 | 140 | 0.13 |
141 | 141 | 0.435 |
142 | 142 | 0.499 |
143 | 143 | 0.0319 |
144 | 144 | 0.771 |
145 | 145 | 0.236 |
146 | 146 | 0.0902 |
147 | 147 | 0.761 |
148 | 148 | 0.513 |
149 | 149 | 0.168 |
15 | 15 | 0.942 |
150 | 150 | 0.321 |
151 | 151 | 0.553 |
152 | 152 | 0.701 |
153 | 153 | 0.947 |
154 | 154 | 0.933 |
155 | 155 | 0.964 |
156 | 156 | 0.308 |
157 | 157 | 0.678 |
158 | 158 | 0.694 |
159 | 159 | 0.472 |
16 | 16 | 0.908 |
160 | 160 | 0.134 |
161 | 161 | 0.804 |
162 | 162 | 0.635 |
163 | 163 | 0.977 |
164 | 164 | 0.0718 |
165 | 165 | 0.977 |
166 | 166 | 0.327 |
167 | 167 | 0.0992 |
168 | 168 | 0.227 |
169 | 169 | 0.268 |
17 | 17 | 0.43 |
18 | 18 | 0.684 |
19 | 19 | 0.228 |
2 | 2 | 0.0449 |
20 | 20 | 0.0179 |
21 | 21 | 0.104 |
22 | 22 | 0.518 |
23 | 23 | 0.0156 |
24 | 24 | 0.711 |
25 | 25 | 0.738 |
26 | 26 | 0.882 |
27 | 27 | 0.099 |
28 | 28 | 0.395 |
29 | 29 | 0.198 |
3 | 3 | 0.679 |
30 | 30 | 0.225 |
31 | 31 | 0.298 |
32 | 32 | 0.0206 |
33 | 33 | 0.214 |
34 | 34 | 0.191 |
35 | 35 | 0.641 |
36 | 36 | 0.0922 |
37 | 37 | 0.503 |
38 | 38 | 0.873 |
39 | 39 | 0.752 |
4 | 4 | 0.197 |
40 | 40 | 0.397 |
41 | 41 | 0.0076 |
42 | 42 | 0.589 |
43 | 43 | 0.355 |
44 | 44 | 0.688 |
45 | 45 | 0.153 |
46 | 46 | 0.637 |
47 | 47 | 0.425 |
48 | 48 | 0.466 |
49 | 49 | 0.537 |
5 | 5 | 0.476 |
50 | 50 | 0.608 |
51 | 51 | 0.35 |
52 | 52 | 0.0239 |
53 | 53 | 0.618 |
54 | 54 | 0.353 |
55 | 55 | 0.712 |
56 | 56 | 0.826 |
57 | 57 | 0.494 |
58 | 58 | 0.39 |
59 | 59 | 0.114 |
6 | 6 | 0.805 |
60 | 60 | 0.089 |
61 | 61 | 0.425 |
62 | 62 | 0.32 |
63 | 63 | 0.866 |
64 | 64 | 0.778 |
65 | 65 | 0.124 |
66 | 66 | 0.179 |
67 | 67 | 0.634 |
68 | 68 | 0.0289 |
69 | 69 | 0.802 |
7 | 7 | 0.852 |
70 | 70 | 0.518 |
71 | 71 | 0.996 |
72 | 72 | 0.44 |
73 | 73 | 0.274 |
74 | 74 | 0.514 |
75 | 75 | 0.0294 |
76 | 76 | 0.0378 |
77 | 77 | 0.428 |
78 | 78 | 0.546 |
79 | 79 | 0.0647 |
8 | 8 | 0.515 |
80 | 80 | 0.046 |
81 | 81 | 0.342 |
82 | 82 | 0.62 |
83 | 83 | 0.332 |
84 | 84 | 0.813 |
85 | 85 | 0.152 |
86 | 86 | 0.956 |
87 | 87 | 0.0886 |
88 | 88 | 0.808 |
89 | 89 | 0.282 |
9 | 9 | 0.0412 |
90 | 90 | 0.841 |
91 | 91 | 0.0419 |
92 | 92 | 0.394 |
93 | 93 | 0.286 |
94 | 94 | 0.335 |
95 | 95 | 0.0805 |
96 | 96 | 0.64 |
97 | 97 | 0.859 |
98 | 98 | 0.488 |
99 | 99 | 0.597 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11259
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000083 epithelial cell of pancreas
DOID:3498 pancreatic ductal adenocarcinoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000083 (epithelial cell of pancreas)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
170 (endocrine gland cancer)
1793 (pancreatic cancer)
4074 (pancreas adenocarcinoma)
4905 (pancreatic carcinoma)
3498 (pancreatic ductal adenocarcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)