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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005653
|accession_numbers=CAGE;DRX007994;DRR008866;DRZ000291;DRZ001676;DRZ011641;DRZ013026
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400,FF:0102267
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!2.80!623.28!MYF5;;chr1:40105299..40105326,-!p1@HEYL!2.28!191.07!HEYL;;chr15:57511609..57511651,+!p2@TCF12!2.14!226.71!TCF12;;chr12:66218255..66218304,+!p3@HMGA2!2.13!342.33!HMGA2;;chr12:69753448..69753577,+!p1@YEATS4!2.04!1998.67!YEATS4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.90!78.58!PEG3;;chr15:42749722..42749739,-!p2@ZFP106!1.89!134.39!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!1.87!105.53!HMGA2;;chr3:147127142..147127168,+!p1@ZIC1!1.87!73.37!ZIC1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.86!71.28!HOXC5;;chr8:72756637..72756664,-!p3@MSC!1.85!78.06!MSC;;chr8:72756667..72756736,-!p2@MSC!1.81!97.88!MSC;;chr12:66218183..66218209,+!p4@HMGA2!1.80!115.79!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.79!268.44!HMGA2;;chr3:147127177..147127194,+!p2@ZIC1!1.79!60.50!ZIC1;;chr11:63684602..63684664,-!p1@RCOR2!1.71!97.88!RCOR2;;chr2:145275947..145275981,-!p10@ZEB2!1.71!49.72!ZEB2;;chr11:17741111..17741124,+!p1@MYOD1!1.69!48.16!MYOD1;;chr8:80679993..80680011,-!p1@HEY1!1.66!63.28!HEY1;;chr7:150946015..150946070,-!p3@SMARCD3!1.63!88.15!SMARCD3;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.61!39.29!MEF2B;;chr13:72441074..72441172,-!p2@DACH1!1.59!37.73!DACH1;;chr13:72441315..72441454,-!p1@DACH1!1.57!71.46!DACH1;;chr16:1031762..1031781,+!p1@SOX8!1.57!36.34!SOX8;;chr11:125034640..125034655,+!p1@PKNOX2!1.56!35.47!PKNOX2;;chr10:131762504..131762555,-!p1@EBF3!1.55!34.42!EBF3;;chr14:61116183..61116208,-!p1@SIX1!1.54!124.13!SIX1;;chr1:3569072..3569093,+!p1@TP73!1.52!31.99!TP73;;chr11:125034605..125034636,+!p2@PKNOX2!1.50!30.95!PKNOX2;;chr17:59529743..59529798,+!p1@TBX4!1.50!30.77!TBX4;;chr1:170633348..170633399,+!p2@PRRX1!1.48!39.29!PRRX1;;chr17:46703687..46703740,-!p1@HOXB9!1.47!28.51!HOXB9;;chr8:106330656..106330684,+!p1@ZFPM2!1.42!64.50!ZFPM2;;chr1:23857325..23857416,-!p2@E2F2!1.42!29.73!E2F2;;chr12:66218152..66218174,+!p10@HMGA2!1.42!27.12!HMGA2;;chr2:145275982..145276003,-!p7@ZEB2!1.41!24.69!ZEB2;;chr19:22817119..22817145,+!p1@ZNF492!1.39!38.77!ZNF492;;chr2:145277882..145277967,-!p3@ZEB2!1.38!39.64!ZEB2;;chr7:27192185..27192209,-!p1@HOXA3!1.38!22.95!HOXA3;;chr7:14029283..14029311,-!p1@ETV1!1.37!115.44!ETV1;;chr3:169381420..169381535,-!p1@MECOM!1.36!25.56!MECOM;;chr17:46806419..46806438,-!p4@HOXB13!1.36!21.91!HOXB13;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.36!21.73!EN2;;chr7:27153454..27153469,-!p2@HOXA3!1.36!21.73!HOXA3;;chr19:50432453..50432468,+!p1@ATF5!1.35!1152.16!ATF5;;chr10:70320074..70320106,+!p1@TET1!1.35!42.07!TET1;;chr4:111558135..111558198,-!p2@PITX2!1.35!21.21!PITX2;;chr11:31832658..31832681,-!p1@PAX6!1.34!20.69!PAX6;;chr9:96717629..96717644,-!p1@BARX1!1.34!20.69!BARX1;;chr22:19748231..19748317,+!p1@TBX1!1.33!20.52!TBX1;;chr2:176969179..176969226,+!p2@HOXD11!1.33!20.34!HOXD11;;chr17:41622765..41622821,-!p2@ETV4!1.32!30.25!ETV4;;chr9:14314131..14314147,-!p2@NFIB!1.31!105.71!NFIB;;chr12:66218573..66218596,+!p7@HMGA2!1.31!28.69!HMGA2;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.65!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.31!19.47!HOXA9;;chr1:119530493..119530572,-!p1@TBX15!1.31!19.30!TBX15;;chr4:111544219..111544240,-!p1@PITX2!1.31!19.30!PITX2;;chr12:66218378..66218401,+!p6@HMGA2!1.30!29.38!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.30!24.17!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!1.30!18.78!TCF12;;chr7:149470641..149470694,-!p1@ZNF467!1.28!81.02!ZNF467;;chr5:134369905..134369972,-!p1@PITX1!1.27!26.60!PITX1;;chr3:147111231..147111281,+!p3@ZIC1!1.27!17.73!ZIC1;;chr7:138666053..138666146,-!p1@KIAA1549!1.26!70.41!KIAA1549;;chr2:176969228..176969260,+!p1@HOXD11!1.26!17.21!HOXD11;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.69!HIF3A;;chr17:70117153..70117174,+!p1@SOX9!1.24!165.69!SOX9;;chr8:80680024..80680046,-!p2@HEY1!1.24!18.60!HEY1;;chr12:81101404..81101421,+!p1@MYF6!1.24!16.52!MYF6;;chr17:46682321..46682362,-!p1@HOXB6!1.23!15.82!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!1.22!15.65!HMGA2;;chr4:174451370..174451387,-!p1@HAND2!1.22!15.65!HAND2;;chr1:203055129..203055147,-!p1@MYOG!1.22!15.47!MYOG;;chr1:41827095..41827155,+!p1@FOXO6!1.20!20.34!FOXO6;;chr7:42276787..42276815,-!p1@GLI3!1.19!38.25!GLI3;;chr11:17741084..17741094,+!p3@MYOD1!1.19!14.60!MYOD1;;chr12:54379029..54379057,+!p2@HOXC10!1.19!14.60!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.43!HOXC5;;chr2:45168997..45169020,+!p4@SIX3!1.19!14.43!SIX3;;chr7:27196267..27196311,-!p1@HOXA7!1.16!13.39!HOXA7;;chr2:25475120..25475176,-!p2@DNMT3A!1.13!16.86!DNMT3A;;chr11:125034586..125034604,+!p3@PKNOX2!1.13!12.52!PKNOX2;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.52!HOXA11;;chr6:50786591..50786614,+!p1@TFAP2B!1.13!12.34!TFAP2B;;chr7:150945663..150945692,-!p5@SMARCD3!1.13!12.34!SMARCD3;;chr17:46622205..46622218,-!p3@HOXB2!1.12!14.26!HOXB2;;chr17:53342311..53342400,+!p1@HLF!1.12!13.91!HLF;;chr2:45169143..45169167,+!p5@SIX3!1.12!12.17!SIX3;;chr12:66218003..66218018,+!p9@HMGA2!1.11!14.60!HMGA2;;chr13:79177674..79177701,-!p1@POU4F1!1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|expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!2.80!623.28!MYF5;;chr1:40105299..40105326,-!p1@HEYL!2.28!191.07!HEYL;;chr15:57511609..57511651,+!p2@TCF12!2.14!226.71!TCF12;;chr12:66218255..66218304,+!p3@HMGA2!2.13!342.33!HMGA2;;chr12:69753448..69753577,+!p1@YEATS4!2.04!1998.67!YEATS4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.90!78.58!PEG3;;chr15:42749722..42749739,-!p2@ZFP106!1.89!134.39!ZFP106;;chr12:66218212..66218244,+!p5@HMGA2!1.87!105.53!HMGA2;;chr3:147127142..147127168,+!p1@ZIC1!1.87!73.37!ZIC1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.86!71.28!HOXC5;;chr8:72756637..72756664,-!p3@MSC!1.85!78.06!MSC;;chr8:72756667..72756736,-!p2@MSC!1.81!97.88!MSC;;chr12:66218183..66218209,+!p4@HMGA2!1.80!115.79!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.79!268.44!HMGA2;;chr3:147127177..147127194,+!p2@ZIC1!1.79!60.50!ZIC1;;chr11:63684602..63684664,-!p1@RCOR2!1.71!97.88!RCOR2;;chr2:145275947..145275981,-!p10@ZEB2!1.71!49.72!ZEB2;;chr11:17741111..17741124,+!p1@MYOD1!1.69!48.16!MYOD1;;chr8:80679993..80680011,-!p1@HEY1!1.66!63.28!HEY1;;chr7:150946015..150946070,-!p3@SMARCD3!1.63!88.15!SMARCD3;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.61!39.29!MEF2B;;chr13:72441074..72441172,-!p2@DACH1!1.59!37.73!DACH1;;chr13:72441315..72441454,-!p1@DACH1!1.57!71.46!DACH1;;chr16:1031762..1031781,+!p1@SOX8!1.57!36.34!SOX8;;chr11:125034640..125034655,+!p1@PKNOX2!1.56!35.47!PKNOX2;;chr10:131762504..131762555,-!p1@EBF3!1.55!34.42!EBF3;;chr14:61116183..61116208,-!p1@SIX1!1.54!124.13!SIX1;;chr1:3569072..3569093,+!p1@TP73!1.52!31.99!TP73;;chr11:125034605..125034636,+!p2@PKNOX2!1.50!30.95!PKNOX2;;chr17:59529743..59529798,+!p1@TBX4!1.50!30.77!TBX4;;chr1:170633348..170633399,+!p2@PRRX1!1.48!39.29!PRRX1;;chr17:46703687..46703740,-!p1@HOXB9!1.47!28.51!HOXB9;;chr8:106330656..106330684,+!p1@ZFPM2!1.42!64.50!ZFPM2;;chr1:23857325..23857416,-!p2@E2F2!1.42!29.73!E2F2;;chr12:66218152..66218174,+!p10@HMGA2!1.42!27.12!HMGA2;;chr2:145275982..145276003,-!p7@ZEB2!1.41!24.69!ZEB2;;chr19:22817119..22817145,+!p1@ZNF492!1.39!38.77!ZNF492;;chr2:145277882..145277967,-!p3@ZEB2!1.38!39.64!ZEB2;;chr7:27192185..27192209,-!p1@HOXA3!1.38!22.95!HOXA3;;chr7:14029283..14029311,-!p1@ETV1!1.37!115.44!ETV1;;chr3:169381420..169381535,-!p1@MECOM!1.36!25.56!MECOM;;chr17:46806419..46806438,-!p4@HOXB13!1.36!21.91!HOXB13;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.36!21.73!EN2;;chr7:27153454..27153469,-!p2@HOXA3!1.36!21.73!HOXA3;;chr19:50432453..50432468,+!p1@ATF5!1.35!1152.16!ATF5;;chr10:70320074..70320106,+!p1@TET1!1.35!42.07!TET1;;chr4:111558135..111558198,-!p2@PITX2!1.35!21.21!PITX2;;chr11:31832658..31832681,-!p1@PAX6!1.34!20.69!PAX6;;chr9:96717629..96717644,-!p1@BARX1!1.34!20.69!BARX1;;chr22:19748231..19748317,+!p1@TBX1!1.33!20.52!TBX1;;chr2:176969179..176969226,+!p2@HOXD11!1.33!20.34!HOXD11;;chr17:41622765..41622821,-!p2@ETV4!1.32!30.25!ETV4;;chr9:14314131..14314147,-!p2@NFIB!1.31!105.71!NFIB;;chr12:66218573..66218596,+!p7@HMGA2!1.31!28.69!HMGA2;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.65!MEOX2;;chr7:27205136..27205164,-!p1@HOXA9!1.31!19.47!HOXA9;;chr1:119530493..119530572,-!p1@TBX15!1.31!19.30!TBX15;;chr4:111544219..111544240,-!p1@PITX2!1.31!19.30!PITX2;;chr12:66218378..66218401,+!p6@HMGA2!1.30!29.38!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.30!24.17!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!1.30!18.78!TCF12;;chr7:149470641..149470694,-!p1@ZNF467!1.28!81.02!ZNF467;;chr5:134369905..134369972,-!p1@PITX1!1.27!26.60!PITX1;;chr3:147111231..147111281,+!p3@ZIC1!1.27!17.73!ZIC1;;chr7:138666053..138666146,-!p1@KIAA1549!1.26!70.41!KIAA1549;;chr2:176969228..176969260,+!p1@HOXD11!1.26!17.21!HOXD11;;chr19:46800289..46800327,+!p2@HIF3A!1.25!16.69!HIF3A;;chr17:70117153..70117174,+!p1@SOX9!1.24!165.69!SOX9;;chr8:80680024..80680046,-!p2@HEY1!1.24!18.60!HEY1;;chr12:81101404..81101421,+!p1@MYF6!1.24!16.52!MYF6;;chr17:46682321..46682362,-!p1@HOXB6!1.23!15.82!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!1.22!15.65!HMGA2;;chr4:174451370..174451387,-!p1@HAND2!1.22!15.65!HAND2;;chr1:203055129..203055147,-!p1@MYOG!1.22!15.47!MYOG;;chr1:41827095..41827155,+!p1@FOXO6!1.20!20.34!FOXO6;;chr7:42276787..42276815,-!p1@GLI3!1.19!38.25!GLI3;;chr11:17741084..17741094,+!p3@MYOD1!1.19!14.60!MYOD1;;chr12:54379029..54379057,+!p2@HOXC10!1.19!14.60!HOXC10;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.19!14.43!HOXC5;;chr2:45168997..45169020,+!p4@SIX3!1.19!14.43!SIX3;;chr7:27196267..27196311,-!p1@HOXA7!1.16!13.39!HOXA7;;chr2:25475120..25475176,-!p2@DNMT3A!1.13!16.86!DNMT3A;;chr11:125034586..125034604,+!p3@PKNOX2!1.13!12.52!PKNOX2;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.52!HOXA11;;chr6:50786591..50786614,+!p1@TFAP2B!1.13!12.34!TFAP2B;;chr7:150945663..150945692,-!p5@SMARCD3!1.13!12.34!SMARCD3;;chr17:46622205..46622218,-!p3@HOXB2!1.12!14.26!HOXB2;;chr17:53342311..53342400,+!p1@HLF!1.12!13.91!HLF;;chr2:45169143..45169167,+!p5@SIX3!1.12!12.17!SIX3;;chr12:66218003..66218018,+!p9@HMGA2!1.11!14.60!HMGA2;;chr13:79177674..79177701,-!p1@POU4F1!1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Line 35: Line 40:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/rhabdomyosarcoma%2520cell%2520line%253aRMS-YM.CNhs11269.10477-106I9.hg38.nobarcode.ctss.bed.gz
|id=FF:10477-106I9
|id=FF:10477-106I9
|is_a=EFO:0002091;;FF:0000210;;FF:0102267
|is_a=EFO:0002091;;FF:0000210;;FF:0102267
|is_obsolete=
|is_obsolete=
|library_id=CNhs11269
|library_id_phase_based=2:CNhs11269
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10477
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10477
|name=rhabdomyosarcoma cell line:RMS-YM
|name=rhabdomyosarcoma cell line:RMS-YM
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 59:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11269,LSID758,release008,COMPLETED
|profile_hcage=CNhs11269,LSID758,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 58: Line 77:
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|sample_cell_line=RMS-YM
Line 79: Line 99:
|top_motifs=SOX5:2.05097737452;E2F1..5:1.98226739798;POU2F1..3:1.93140335193;PITX1..3:1.91693690451;POU1F1:1.91491934959;ADNP_IRX_SIX_ZHX:1.8884588937;PATZ1:1.83803401409;NKX2-1,4:1.81193835295;PAX4:1.80199409813;NR6A1:1.70992312667;TFDP1:1.64524115238;GFI1:1.61212493544;MZF1:1.58319446248;CDC5L:1.54110208362;RORA:1.51150652771;CDX1,2,4:1.42605686536;RBPJ:1.41295074195;RXR{A,B,G}:1.38914901583;PBX1:1.32164423469;SOX17:1.29817503936;EN1,2:1.28818650457;RREB1:1.28231136039;FOXP1:1.27400626386;MYBL2:1.27381243136;HMGA1,2:1.2570777978;TOPORS:1.24571870939;PAX1,9:1.20826522097;POU6F1:1.20683043305;NFY{A,B,C}:1.1933821383;AIRE:1.19081353337;DBP:1.18531683682;IKZF2:1.17686159518;MYB:1.13256889581;NANOG:1.08619166482;ZNF143:1.0325796583;PAX8:1.02498271241;BPTF:1.02236974532;T:0.974693240395;BREu{core}:0.973038925362;NKX6-1,2:0.938963619011;LEF1_TCF7_TCF7L1,2:0.918841674613;ZNF384:0.907833237414;FOX{I1,J2}:0.904655450573;CUX2:0.883349182753;ZNF238:0.87755429008;PDX1:0.847808438188;CRX:0.834565551351;MEF2{A,B,C,D}:0.833864964108;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.808337535646;MED-1{core}:0.785026661506;EVI1:0.77910224165;TGIF1:0.7787422326;PAX3,7:0.769105197349;AHR_ARNT_ARNT2:0.759418526478;NRF1:0.752695420712;MAZ:0.737240128622;PRRX1,2:0.734929997528;FOXA2:0.725726282678;HOXA9_MEIS1:0.717908314027;ELK1,4_GABP{A,B1}:0.671777859757;FOXQ1:0.661372223265;STAT1,3:0.646856750653;PRDM1:0.640186577479;TEF:0.636983577009;YY1:0.605297858406;FOXL1:0.596947290996;NKX2-3_NKX2-5:0.591013806161;GTF2I:0.578548737232;HOX{A5,B5}:0.550531990196;GATA4:0.543021343728;TFAP4:0.542382120396;TEAD1:0.539291033946;EGR1..3:0.53588028052;ZBTB16:0.522189572867;IKZF1:0.478669138547;POU5F1:0.466728434581;POU3F1..4:0.462453858355;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.452284043966;FOXD3:0.442885315963;DMAP1_NCOR{1,2}_SMARC:0.437432679253;KLF4:0.415128819832;NFIL3:0.412508120826;ZIC1..3:0.366556126047;TLX1..3_NFIC{dimer}:0.365638293026;HAND1,2:0.351424960539;GFI1B:0.346734800892;OCT4_SOX2{dimer}:0.327890077684;NKX2-2,8:0.271123707101;NFIX:0.257539669936;GCM1,2:0.244940838927;HOX{A6,A7,B6,B7}:0.243760779963;TBP:0.238374644309;LHX3,4:0.232642351405;SOX{8,9,10}:0.221411649684;NHLH1,2:0.20890506137;STAT5{A,B}:0.189086076435;VSX1,2:0.162698030924;NR5A1,2:0.157664203439;HOX{A4,D4}:0.155314755597;ZNF148:0.137240018148;TAL1_TCF{3,4,12}:0.0940128620439;ATF4:0.0866189339175;SOX2:0.0801062655785;MYFfamily:0.0720061603605;FOXP3:0.059045551198;AR:0.047282781327;NKX3-2:0.0200511214394;GTF2A1,2:0.017936543554;GLI1..3:0.0107940514051;ZFP161:0.00591422068711;ONECUT1,2:-0.00646026868903;RFX1:-0.0172605039437;HIC1:-0.0400664591745;LMO2:-0.0412958391316;PAX6:-0.0513461892214;ESRRA:-0.0556047553543;SPZ1:-0.0626083898646;NR3C1:-0.0697116951089;GZF1:-0.0748417114633;bHLH_family:-0.0930447678275;TFAP2B:-0.101488774224;HNF4A_NR2F1,2:-0.129812283422;RFX2..5_RFXANK_RFXAP:-0.148251114013;GATA6:-0.162053090724;MYOD1:-0.169422849202;XCPE1{core}:-0.1759571939;HNF1A:-0.18337326776;NKX3-1:-0.212731085519;FOXM1:-0.221182910057;TP53:-0.240230978166;FOXN1:-0.252439229115;UFEwm:-0.25640018414;MTE{core}:-0.259003335933;CEBPA,B_DDIT3:-0.265310471207;TFAP2{A,C}:-0.325229396056;REST:-0.403844533701;ATF2:-0.430326821111;HSF1,2:-0.434796975549;RUNX1..3:-0.438117881871;JUN:-0.453048240585;ELF1,2,4:-0.45930268481;HLF:-0.461402998564;NANOG{mouse}:-0.466240863093;SNAI1..3:-0.470829555644;NFKB1_REL_RELA:-0.477315152968;NFE2:-0.48306848935;HES1:-0.4914862931;TLX2:-0.492093584296;SP1:-0.501280889127;ALX1:-0.501695036523;FOSL2:-0.521881249408;SPI1:-0.534066383635;IRF1,2:-0.550297226815;ATF6:-0.556918433632;SREBF1,2:-0.56375455522;ATF5_CREB3:-0.571985395555;PAX2:-0.572893496266;NFATC1..3:-0.576473129441;FOXO1,3,4:-0.582261241884;IRF7:-0.586818838478;HBP1_HMGB_SSRP1_UBTF:-0.594215253894;FOS_FOS{B,L1}_JUN{B,D}:-0.607188359925;SPIB:-0.629140829667;PAX5:-0.635515014143;NFE2L2:-0.681495783316;TBX4,5:-0.683212902125;SMAD1..7,9:-0.684375222135;BACH2:-0.691137410353;ZBTB6:-0.71998478729;ZEB1:-0.726297201178;FOX{D1,D2}:-0.760006209281;XBP1:-0.764440983962;MTF1:-0.774983251456;EBF1:-0.784238279002;STAT2,4,6:-0.785493086869;CREB1:-0.827633950937;ALX4:-0.844167318774;ETS1,2:-0.847790241218;FOX{F1,F2,J1}:-0.84980988192;ARID5B:-0.858491752825;SRF:-0.898300177686;NR1H4:-0.961320560377;ZNF423:-1.07149551404;EP300:-1.20441089674;PPARG:-1.21258022522;HMX1:-1.30844588295;TFCP2:-1.37917042374;MAFB:-1.56736791931;NFE2L1:-1.73658981201;HIF1A:-1.76388171627;RXRA_VDR{dimer}:-1.84355048326;ESR1:-1.86686912521
|top_motifs=SOX5:2.05097737452;E2F1..5:1.98226739798;POU2F1..3:1.93140335193;PITX1..3:1.91693690451;POU1F1:1.91491934959;ADNP_IRX_SIX_ZHX:1.8884588937;PATZ1:1.83803401409;NKX2-1,4:1.81193835295;PAX4:1.80199409813;NR6A1:1.70992312667;TFDP1:1.64524115238;GFI1:1.61212493544;MZF1:1.58319446248;CDC5L:1.54110208362;RORA:1.51150652771;CDX1,2,4:1.42605686536;RBPJ:1.41295074195;RXR{A,B,G}:1.38914901583;PBX1:1.32164423469;SOX17:1.29817503936;EN1,2:1.28818650457;RREB1:1.28231136039;FOXP1:1.27400626386;MYBL2:1.27381243136;HMGA1,2:1.2570777978;TOPORS:1.24571870939;PAX1,9:1.20826522097;POU6F1:1.20683043305;NFY{A,B,C}:1.1933821383;AIRE:1.19081353337;DBP:1.18531683682;IKZF2:1.17686159518;MYB:1.13256889581;NANOG:1.08619166482;ZNF143:1.0325796583;PAX8:1.02498271241;BPTF:1.02236974532;T:0.974693240395;BREu{core}:0.973038925362;NKX6-1,2:0.938963619011;LEF1_TCF7_TCF7L1,2:0.918841674613;ZNF384:0.907833237414;FOX{I1,J2}:0.904655450573;CUX2:0.883349182753;ZNF238:0.87755429008;PDX1:0.847808438188;CRX:0.834565551351;MEF2{A,B,C,D}:0.833864964108;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.808337535646;MED-1{core}:0.785026661506;EVI1:0.77910224165;TGIF1:0.7787422326;PAX3,7:0.769105197349;AHR_ARNT_ARNT2:0.759418526478;NRF1:0.752695420712;MAZ:0.737240128622;PRRX1,2:0.734929997528;FOXA2:0.725726282678;HOXA9_MEIS1:0.717908314027;ELK1,4_GABP{A,B1}:0.671777859757;FOXQ1:0.661372223265;STAT1,3:0.646856750653;PRDM1:0.640186577479;TEF:0.636983577009;YY1:0.605297858406;FOXL1:0.596947290996;NKX2-3_NKX2-5:0.591013806161;GTF2I:0.578548737232;HOX{A5,B5}:0.550531990196;GATA4:0.543021343728;TFAP4:0.542382120396;TEAD1:0.539291033946;EGR1..3:0.53588028052;ZBTB16:0.522189572867;IKZF1:0.478669138547;POU5F1:0.466728434581;POU3F1..4:0.462453858355;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.452284043966;FOXD3:0.442885315963;DMAP1_NCOR{1,2}_SMARC:0.437432679253;KLF4:0.415128819832;NFIL3:0.412508120826;ZIC1..3:0.366556126047;TLX1..3_NFIC{dimer}:0.365638293026;HAND1,2:0.351424960539;GFI1B:0.346734800892;OCT4_SOX2{dimer}:0.327890077684;NKX2-2,8:0.271123707101;NFIX:0.257539669936;GCM1,2:0.244940838927;HOX{A6,A7,B6,B7}:0.243760779963;TBP:0.238374644309;LHX3,4:0.232642351405;SOX{8,9,10}:0.221411649684;NHLH1,2:0.20890506137;STAT5{A,B}:0.189086076435;VSX1,2:0.162698030924;NR5A1,2:0.157664203439;HOX{A4,D4}:0.155314755597;ZNF148:0.137240018148;TAL1_TCF{3,4,12}:0.0940128620439;ATF4:0.0866189339175;SOX2:0.0801062655785;MYFfamily:0.0720061603605;FOXP3:0.059045551198;AR:0.047282781327;NKX3-2:0.0200511214394;GTF2A1,2:0.017936543554;GLI1..3:0.0107940514051;ZFP161:0.00591422068711;ONECUT1,2:-0.00646026868903;RFX1:-0.0172605039437;HIC1:-0.0400664591745;LMO2:-0.0412958391316;PAX6:-0.0513461892214;ESRRA:-0.0556047553543;SPZ1:-0.0626083898646;NR3C1:-0.0697116951089;GZF1:-0.0748417114633;bHLH_family:-0.0930447678275;TFAP2B:-0.101488774224;HNF4A_NR2F1,2:-0.129812283422;RFX2..5_RFXANK_RFXAP:-0.148251114013;GATA6:-0.162053090724;MYOD1:-0.169422849202;XCPE1{core}:-0.1759571939;HNF1A:-0.18337326776;NKX3-1:-0.212731085519;FOXM1:-0.221182910057;TP53:-0.240230978166;FOXN1:-0.252439229115;UFEwm:-0.25640018414;MTE{core}:-0.259003335933;CEBPA,B_DDIT3:-0.265310471207;TFAP2{A,C}:-0.325229396056;REST:-0.403844533701;ATF2:-0.430326821111;HSF1,2:-0.434796975549;RUNX1..3:-0.438117881871;JUN:-0.453048240585;ELF1,2,4:-0.45930268481;HLF:-0.461402998564;NANOG{mouse}:-0.466240863093;SNAI1..3:-0.470829555644;NFKB1_REL_RELA:-0.477315152968;NFE2:-0.48306848935;HES1:-0.4914862931;TLX2:-0.492093584296;SP1:-0.501280889127;ALX1:-0.501695036523;FOSL2:-0.521881249408;SPI1:-0.534066383635;IRF1,2:-0.550297226815;ATF6:-0.556918433632;SREBF1,2:-0.56375455522;ATF5_CREB3:-0.571985395555;PAX2:-0.572893496266;NFATC1..3:-0.576473129441;FOXO1,3,4:-0.582261241884;IRF7:-0.586818838478;HBP1_HMGB_SSRP1_UBTF:-0.594215253894;FOS_FOS{B,L1}_JUN{B,D}:-0.607188359925;SPIB:-0.629140829667;PAX5:-0.635515014143;NFE2L2:-0.681495783316;TBX4,5:-0.683212902125;SMAD1..7,9:-0.684375222135;BACH2:-0.691137410353;ZBTB6:-0.71998478729;ZEB1:-0.726297201178;FOX{D1,D2}:-0.760006209281;XBP1:-0.764440983962;MTF1:-0.774983251456;EBF1:-0.784238279002;STAT2,4,6:-0.785493086869;CREB1:-0.827633950937;ALX4:-0.844167318774;ETS1,2:-0.847790241218;FOX{F1,F2,J1}:-0.84980988192;ARID5B:-0.858491752825;SRF:-0.898300177686;NR1H4:-0.961320560377;ZNF423:-1.07149551404;EP300:-1.20441089674;PPARG:-1.21258022522;HMX1:-1.30844588295;TFCP2:-1.37917042374;MAFB:-1.56736791931;NFE2L1:-1.73658981201;HIF1A:-1.76388171627;RXRA_VDR{dimer}:-1.84355048326;ESR1:-1.86686912521
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10477-106I9;search_select_hide=table117:FF:10477-106I9
}}
}}

Latest revision as of 14:26, 3 June 2020

Name:rhabdomyosarcoma cell line:RMS-YM
Species:Human (Homo sapiens)
Library ID:CNhs11269
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stageNA
sexmale
age2
cell typeskeletal muscle cell
cell lineRMS-YM
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005653
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11269 CAGE DRX007994 DRR008866
Accession ID Hg19

Library idBAMCTSS
CNhs11269 DRZ000291 DRZ001676
Accession ID Hg38

Library idBAMCTSS
CNhs11269 DRZ011641 DRZ013026
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0629
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.688
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0.99
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.971
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0952
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.146
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00155
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.125
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.774
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0996
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0281
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.64
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0696
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.229
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.229
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.0996
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0696
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11269

Jaspar motifP-value
MA0002.27.98936e-4
MA0003.10.119
MA0004.10.363
MA0006.10.18
MA0007.10.263
MA0009.10.313
MA0014.10.266
MA0017.10.00402
MA0018.20.776
MA0019.10.252
MA0024.11.50709e-8
MA0025.10.649
MA0027.10.271
MA0028.10.107
MA0029.10.628
MA0030.10.0693
MA0031.10.421
MA0035.20.696
MA0038.12.46507e-5
MA0039.20.0186
MA0040.10.49
MA0041.10.179
MA0042.10.482
MA0043.10.996
MA0046.10.0882
MA0047.20.0639
MA0048.10.5
MA0050.15.32268e-4
MA0051.10.0398
MA0052.10.918
MA0055.10.846
MA0057.10.215
MA0058.10.481
MA0059.10.611
MA0060.12.80125e-13
MA0061.10.0113
MA0062.20.852
MA0065.20.0997
MA0066.10.0583
MA0067.10.15
MA0068.16.39223e-6
MA0069.10.808
MA0070.10.574
MA0071.10.562
MA0072.10.332
MA0073.10.552
MA0074.10.0945
MA0076.10.0621
MA0077.10.663
MA0078.10.989
MA0079.20.128
MA0080.22.70042e-12
MA0081.10.0585
MA0083.10.00222
MA0084.10.602
MA0087.10.937
MA0088.10.525
MA0090.10.399
MA0091.10.476
MA0092.10.154
MA0093.10.349
MA0099.24.12171e-15
MA0100.10.11
MA0101.10.119
MA0102.24.55939e-4
MA0103.10.0274
MA0104.20.0833
MA0105.10.0873
MA0106.10.274
MA0107.10.0249
MA0108.20.101
MA0111.10.826
MA0112.27.59939e-4
MA0113.10.245
MA0114.10.116
MA0115.10.365
MA0116.10.0435
MA0117.10.349
MA0119.10.801
MA0122.10.4
MA0124.10.433
MA0125.10.19
MA0131.10.197
MA0135.10.259
MA0136.13.48335e-9
MA0137.20.161
MA0138.20.126
MA0139.10.189
MA0140.10.861
MA0141.10.12
MA0142.10.945
MA0143.10.963
MA0144.10.0113
MA0145.10.103
MA0146.10.262
MA0147.10.099
MA0148.10.0813
MA0149.10.0973
MA0150.14.53606e-5
MA0152.10.336
MA0153.10.158
MA0154.10.0145
MA0155.10.444
MA0156.17.43962e-5
MA0157.10.984
MA0159.10.0425
MA0160.10.0474
MA0162.10.242
MA0163.10.262
MA0164.10.792
MA0258.10.0179
MA0259.10.145



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11269

Novel motifP-value
10.369
100.44
1000.753
1010.969
1020.82
1030.0726
1040.844
1050.935
1060.00439
1070.692
1080.829
1090.0181
110.0628
1100.934
1110.557
1123.74919e-4
1130.00322
1140.0131
1150.276
1160.781
1170.829
1180.253
1190.219
120.297
1200.864
1210.569
1220.171
1230.611
1240.534
1250.317
1260.203
1270.32
1280.139
1290.845
130.776
1300.0248
1310.959
1320.945
1330.611
1340.562
1350.142
1360.262
1370.0571
1380.589
1390.0578
140.163
1400.408
1410.746
1420.233
1430.0456
1440.666
1450.923
1460.707
1470.437
1480.115
1490.0579
150.204
1500.513
1510.528
1520.00863
1530.98
1540.663
1550.806
1560.533
1570.492
1580.852
1590.233
160.105
1600.75
1610.825
1620.571
1630.564
1640.164
1650.323
1660.889
1670.475
1680.632
1690.052
170.503
180.623
190.363
20.186
200.981
210.909
220.167
230.0131
240.512
250.579
260.473
270.0377
280.949
290.455
30.418
300.364
310.55
320.0198
330.705
340.604
350.697
360.542
370.0745
380.275
390.726
40.381
400.14
410.337
420.984
430.249
440.0611
450.291
460.103
470.335
480.34
490.81
50.202
500.887
510.948
520.148
530.622
540.98
550.299
560.97
570.623
580.345
590.0199
60.555
600.0375
611
620.278
630.337
640.247
650.0424
660.0109
670.589
680.702
690.251
70.919
700.0304
710.148
720.038
730.00721
740.0994
750.477
760.998
770.0487
780.393
790.593
80.355
800.191
810.38
820.00253
830.357
840.491
850.00309
860.274
870.0149
880.595
890.0443
90.186
900.406
910.189
920.153
930.577
940.518
950.0218
960.203
970.917
980.303
990.779



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11269


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0102267 (rhabdomyosarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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