FF:10455-106G5: Difference between revisions

Latest revision as of 14:03, 3 June 2020

Name:	acute lymphoblastic leukemia (B-ALL) cell line:BALL-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11251
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	unknown
age	unknown
cell type	b cell
cell line	BALL-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004774

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11251		CAGE		DRX007797		DRR008669

Accession ID Hg19

Library id		BAM		CTSS
CNhs11251		DRZ000094		DRZ001479

Accession ID Hg38

Library id		BAM		CTSS
CNhs11251		DRZ011444		DRZ012829

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.242
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.709
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.074
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0532
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0208
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.074
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.388
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.241
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.156
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.159
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0321
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.822
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.143
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0424
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.00966
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.241
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.598
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	1.024
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.00801
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0359
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.241
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.308
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11251

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.547
MA0003.1	MA0003.1	0.448
MA0004.1	MA0004.1	0.0851
MA0006.1	MA0006.1	0.311
MA0007.1	MA0007.1	0.48
MA0009.1	MA0009.1	0.462
MA0014.1	MA0014.1	0.889
MA0017.1	MA0017.1	0.117
MA0018.2	MA0018.2	0.355
MA0019.1	MA0019.1	0.158
MA0024.1	MA0024.1	1.23037e-8
MA0025.1	MA0025.1	0.117
MA0027.1	MA0027.1	0.228
MA0028.1	MA0028.1	2.35556e-6
MA0029.1	MA0029.1	0.317
MA0030.1	MA0030.1	0.111
MA0031.1	MA0031.1	0.268
MA0035.2	MA0035.2	0.693
MA0038.1	MA0038.1	0.693
MA0039.2	MA0039.2	0.538
MA0040.1	MA0040.1	0.046
MA0041.1	MA0041.1	0.0586
MA0042.1	MA0042.1	0.177
MA0043.1	MA0043.1	0.618
MA0046.1	MA0046.1	0.0742
MA0047.2	MA0047.2	0.375
MA0048.1	MA0048.1	0.45
MA0050.1	MA0050.1	0.00794
MA0051.1	MA0051.1	0.0442
MA0052.1	MA0052.1	0.506
MA0055.1	MA0055.1	0.0565
MA0057.1	MA0057.1	0.836
MA0058.1	MA0058.1	0.0445
MA0059.1	MA0059.1	0.00126
MA0060.1	MA0060.1	0.00266
MA0061.1	MA0061.1	0.00337
MA0062.2	MA0062.2	2.1856e-9
MA0065.2	MA0065.2	0.0217
MA0066.1	MA0066.1	0.63
MA0067.1	MA0067.1	0.659
MA0068.1	MA0068.1	0.521
MA0069.1	MA0069.1	0.682
MA0070.1	MA0070.1	0.606
MA0071.1	MA0071.1	0.322
MA0072.1	MA0072.1	0.916
MA0073.1	MA0073.1	0.803
MA0074.1	MA0074.1	0.723
MA0076.1	MA0076.1	1.71369e-9
MA0077.1	MA0077.1	0.473
MA0078.1	MA0078.1	0.234
MA0079.2	MA0079.2	0.124
MA0080.2	MA0080.2	6.60993e-4
MA0081.1	MA0081.1	0.012
MA0083.1	MA0083.1	1.91265e-7
MA0084.1	MA0084.1	0.118
MA0087.1	MA0087.1	0.232
MA0088.1	MA0088.1	0.00835
MA0090.1	MA0090.1	1.47504e-5
MA0091.1	MA0091.1	0.677
MA0092.1	MA0092.1	0.854
MA0093.1	MA0093.1	0.076
MA0099.2	MA0099.2	7.11817e-12
MA0100.1	MA0100.1	0.00439
MA0101.1	MA0101.1	0.273
MA0102.2	MA0102.2	0.283
MA0103.1	MA0103.1	0.0118
MA0104.2	MA0104.2	1.79074e-4
MA0105.1	MA0105.1	7.84933e-6
MA0106.1	MA0106.1	0.566
MA0107.1	MA0107.1	0.284
MA0108.2	MA0108.2	1.11002e-9
MA0111.1	MA0111.1	0.167
MA0112.2	MA0112.2	0.408
MA0113.1	MA0113.1	0.486
MA0114.1	MA0114.1	0.0463
MA0115.1	MA0115.1	0.0498
MA0116.1	MA0116.1	7.73228e-6
MA0117.1	MA0117.1	0.922
MA0119.1	MA0119.1	0.698
MA0122.1	MA0122.1	0.854
MA0124.1	MA0124.1	0.782
MA0125.1	MA0125.1	0.606
MA0131.1	MA0131.1	0.202
MA0135.1	MA0135.1	0.022
MA0136.1	MA0136.1	5.84944e-6
MA0137.2	MA0137.2	0.00353
MA0138.2	MA0138.2	0.637
MA0139.1	MA0139.1	0.687
MA0140.1	MA0140.1	0.856
MA0141.1	MA0141.1	0.392
MA0142.1	MA0142.1	0.0794
MA0143.1	MA0143.1	0.657
MA0144.1	MA0144.1	0.00938
MA0145.1	MA0145.1	0.114
MA0146.1	MA0146.1	0.227
MA0147.1	MA0147.1	7.04303e-5
MA0148.1	MA0148.1	0.257
MA0149.1	MA0149.1	0.134
MA0150.1	MA0150.1	0.1
MA0152.1	MA0152.1	0.795
MA0153.1	MA0153.1	0.00158
MA0154.1	MA0154.1	0.0241
MA0155.1	MA0155.1	0.525
MA0156.1	MA0156.1	5.49827e-6
MA0157.1	MA0157.1	0.968
MA0159.1	MA0159.1	0.206
MA0160.1	MA0160.1	0.753
MA0162.1	MA0162.1	0.951
MA0163.1	MA0163.1	2.58504e-11
MA0164.1	MA0164.1	0.82
MA0258.1	MA0258.1	0.312
MA0259.1	MA0259.1	0.107

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11251

Novel motif	Logo	P-value
1	1	0.024
10	10	0.0186
100	100	0.0787
101	101	0.403
102	102	0.992
103	103	0.672
104	104	0.987
105	105	0.614
106	106	0.706
107	107	0.415
108	108	0.762
109	109	0.139
11	11	0.0746
110	110	0.162
111	111	0.0402
112	112	0.465
113	113	0.813
114	114	0.967
115	115	0.609
116	116	0.394
117	117	0.0044
118	118	0.333
119	119	0.255
12	12	0.527
120	120	0.084
121	121	0.574
122	122	0.892
123	123	0.00124
124	124	0.0683
125	125	0.0401
126	126	0.418
127	127	0.864
128	128	0.113
129	129	0.4
13	13	0.0389
130	130	0.762
131	131	0.242
132	132	0.887
133	133	0.601
134	134	0.464
135	135	0.283
136	136	0.206
137	137	0.155
138	138	0.731
139	139	0.486
14	14	0.824
140	140	0.684
141	141	0.00765
142	142	0.353
143	143	0.943
144	144	0.722
145	145	0.289
146	146	0.53
147	147	0.084
148	148	0.32
149	149	0.785
15	15	0.181
150	150	0.782
151	151	0.584
152	152	0.0467
153	153	0.917
154	154	0.616
155	155	0.00937
156	156	0.813
157	157	0.507
158	158	0.879
159	159	0.386
16	16	0.875
160	160	0.354
161	161	0.239
162	162	0.663
163	163	0.385
164	164	0.131
165	165	0.428
166	166	0.313
167	167	0.111
168	168	0.409
169	169	0.955
17	17	0.975
18	18	0.57
19	19	0.7
2	2	0.15
20	20	0.308
21	21	0.199
22	22	0.742
23	23	0.15
24	24	0.514
25	25	0.148
26	26	0.0526
27	27	0.956
28	28	0.447
29	29	0.0205
3	3	0.128
30	30	0.0511
31	31	0.845
32	32	0.305
33	33	0.587
34	34	0.7
35	35	0.222
36	36	0.0349
37	37	0.29
38	38	0.785
39	39	0.244
4	4	0.435
40	40	0.151
41	41	0.831
42	42	0.136
43	43	0.465
44	44	0.0161
45	45	0.303
46	46	0.231
47	47	0.0447
48	48	0.0898
49	49	0.16
5	5	0.823
50	50	0.977
51	51	0.806
52	52	0.088
53	53	0.715
54	54	0.83
55	55	0.346
56	56	0.723
57	57	0.0489
58	58	0.169
59	59	0.828
6	6	0.626
60	60	0.655
61	61	0.0718
62	62	0.162
63	63	0.785
64	64	0.317
65	65	0.718
66	66	0.16
67	67	0.397
68	68	0.375
69	69	0.954
7	7	0.204
70	70	0.924
71	71	0.0296
72	72	0.497
73	73	0.869
74	74	0.543
75	75	0.00244
76	76	0.118
77	77	0.533
78	78	0.201
79	79	0.483
8	8	0.239
80	80	0.559
81	81	0.123
82	82	0.918
83	83	0.882
84	84	0.558
85	85	0.213
86	86	0.389
87	87	0.26
88	88	0.768
89	89	0.62
9	9	0.489
90	90	0.0152
91	91	0.68
92	92	0.507
93	93	0.853
94	94	0.39
95	95	0.168
96	96	0.903
97	97	0.203
98	98	0.607
99	99	0.409

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11251

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:12603 acute leukemia
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102144 acute lymphoblastic leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
12603 (acute leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102144 (acute lymphoblastic leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100741 (lymphocytic leukemia cell line sample)
0100773 (lymphoblastoid cell line sample)
0100739 (lymphoblastic leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004774
+|accession_numbers=CAGE;DRX007797;DRR008669;DRZ000094;DRZ001479;DRZ011444;DRZ012829
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:50922187..50922204,+!p1@SPIB!2.77!588.25!SPIB;;chr6:391743..391759,+!p1@IRF4!2.31!200.85!IRF4;;chr2:68592406..68592424,+!p1@PLEK!2.15!140.65!PLEK;;chr11:111249993..111250006,-!p1@POU2AF1!2.02!104.79!POU2AF1;;chr2:231090471..231090504,+!p2@SP140!1.83!66.33!SP140;;chr2:231090433..231090469,+!p1@SP140!1.80!62.06!SP140;;chr16:85932760..85932775,+!p1@IRF8!1.77!57.41!IRF8;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.75!55.00!MEF2B;;chr17:38020392..38020477,-!p1@IKZF3!1.73!52.95!IKZF3;;chr2:185463247..185463263,+!p1@ZNF804A!1.70!85.47!ZNF804A;;chr11:47400078..47400106,-!p1@SPI1!1.70!49.05!SPI1;;chr3:189349162..189349207,+!p2@TP63!1.65!43.29!TP63;;chr7:115799942..115799955,-!p5@TFEC!1.58!36.60!TFEC;;chr19:36391434..36391450,-!p1@NFKBID!1.57!69.12!NFKBID;;chr7:50343634..50343717,+!p2@IKZF1!1.55!34.19!IKZF1;;chr2:100759010..100759035,-!p1@AFF3!1.51!31.21!AFF3;;chr18:52989031..52989079,-!p2@TCF4!1.49!68.93!TCF4;;chr15:57511609..57511651,+!p2@TCF12!1.43!42.92!TCF12;;chr2:100759037..100759058,-!p2@AFF3!1.42!25.46!AFF3;;chr14:75988771..75988826,+!p1@BATF!1.40!31.77!BATF;;chr7:50348268..50348366,+!p4@IKZF1!1.40!24.15!IKZF1;;chr1:167298300..167298319,+!p2@POU2F1!1.40!23.97!POU2F1;;chr2:68592394..68592405,+!p2@PLEK!1.37!22.30!PLEK;;chr20:42295745..42295765,+!p1@MYBL2!1.36!346.34!MYBL2;;chr7:64126535..64126559,+!p2@ZNF107!1.34!44.22!ZNF107;;chr3:101546827..101546847,+!p2@NFKBIZ!1.32!27.68!NFKBIZ;;chr5:134369905..134369972,-!p1@PITX1!1.28!27.31!PITX1;;chr7:50344251..50344288,+!p3@IKZF1!1.28!18.21!IKZF1;;chr19:42636586..42636607,-!p1@POU2F2!1.25!45.52!POU2F2;;chr2:60778035..60778060,-!p4@BCL11A!1.25!20.25!BCL11A;;chrX:131623026..131623039,-!p5@MBNL3!1.22!15.61!MBNL3;;chr2:60780607..60780624,-!p2@BCL11A!1.21!45.89!BCL11A;;chr1:23857698..23857733,-!p1@E2F2!1.21!28.06!E2F2;;chr19:50432453..50432468,+!p1@ATF5!1.20!822.74!ATF5;;chr2:60780753..60780800,-!p1@BCL11A!1.19!71.16!BCL11A;;chr20:42295713..42295738,+!p2@MYBL2!1.17!80.08!MYBL2;;chr17:41623692..41623715,-!p1@ETV4!1.15!56.30!ETV4;;chr6:135502408..135502459,+!p2@MYB!1.14!15.05!MYB;;chr13:41593425..41593480,-!p1@ELF1!1.13!80.08!ELF1;;chr20:50159198..50159299,-!p1@NFATC2!1.11!17.47!NFATC2;;chr7:50344289..50344323,+!p1@IKZF1!1.11!11.89!IKZF1;;chr2:60781201..60781258,-!p3@BCL11A!1.10!11.71!BCL11A;;chrY:21906594..21906622,-!p1@KDM5D!1.10!11.52!KDM5D;;chr6:135502501..135502546,+!p1@MYB!1.09!13.56!MYB;;chr2:214016254..214016282,-!p7@IKZF2!1.09!11.33!IKZF2;;chr2:231090344..231090361,-!p3@SP110!1.09!11.33!SP110;;chr15:57511589..57511608,+!p4@TCF12!1.08!11.15!TCF12;;chr18:53089538..53089578,-!p14@TCF4!1.08!11.15!TCF4;;chr1:158975744..158975769,+!p10@IFI16!1.08!11.15!IFI16;;chr2:214013461..214013517,-!p6@IKZF2!1.08!10.96!IKZF2;;chr9:37034469..37034474,-!p1@PAX5!1.08!10.96!PAX5;;chr7:64126503..64126528,+!p1@ZNF107!1.07!76.55!ZNF107;;chr6:34204973..34204990,+!p4@HMGA1!1.06!141.77!HMGA1;;chr7:115799916..115799932,-!p6@TFEC!1.06!10.59!TFEC;;chr19:45579725..45579743,-!p1@ZNF296!1.04!45.15!ZNF296;;chr5:124084493..124084524,-!p2@ZNF608!1.04!22.48!ZNF608;;chr17:42295777..42295816,-!p7@UBTF!1.04!12.08!UBTF;;chr19:36204309..36204335,+!p1@ZBTB32!1.04!10.03!ZBTB32;;chr9:37034186..37034216,-!p2@PAX5!1.04!10.03!PAX5;;chr17:38020557..38020572,-!p4@IKZF3!1.04!9.85!IKZF3;;chr18:52989001..52989030,-!p10@TCF4!1.03!10.78!TCF4;;chr18:53089521..53089533,-!p22@TCF4!1.03!9.66!TCF4;;chr18:53255415..53255491,-!p1@TCF4!1.02!80.82!TCF4;;chr12:54447599..54447630,+!p3@HOXC4!1.02!11.71!HOXC4;;chr1:158979686..158979745,+!p1@IFI16!1.01!309.73!IFI16;;chr5:88178983..88179012,-!p1@MEF2C!1.01!72.65!MEF2C;;chr18:53089453..53089482,-!p11@TCF4!1.01!9.29!TCF4;;chr17:37934204..37934241,-!p3@IKZF3!1.00!8.92!IKZF3;;chr8:86099884..86099918,+!p4@E2F5!1.00!8.92!E2F5;;chr7:64838786..64838809,+!p2@ZNF92!0.98!49.42!ZNF92;;chr18:53257027..53257052,-!p3@TCF4!0.98!35.30!TCF4;;chr2:100758991..100759009,-!p3@AFF3!0.98!8.55!AFF3;;chr19:1652555..1652568,-!p2@TCF3!0.97!34.93!TCF3;;chr11:19262461..19262476,-!p5@E2F8!0.97!8.36!E2F8;;chr19:42627037..42627084,-!p3@POU2F2!0.97!8.36!POU2F2;;chr9:117150254..117150271,-!p1@AKNA!0.96!23.04!AKNA;;chr4:109089901..109089930,-!p3@LEF1!0.96!8.18!LEF1;;chr21:36421535..36421610,-!p2@RUNX1!0.95!29.17!RUNX1;;chr14:75988831..75988847,+!p2@BATF!0.95!7.99!BATF;;chr7:28610099..28610113,+!p5@CREB5!0.95!7.99!CREB5;;chr9:37034258..37034270,-!p3@PAX5!0.95!7.99!PAX5;;chr1:226595726..226595737,-!p2@PARP1!0.94!19.14!PARP1;;chr5:158526917..158526932,-!p1@EBF1!0.92!18.77!EBF1;;chr13:41593493..41593506,-!p8@ELF1!0.92!7.25!ELF1;;chr3:71179699..71179744,-!p2@FOXP1!0.91!56.30!FOXP1;;chr12:26277956..26277980,-!p1@BHLHE41!0.91!26.57!BHLHE41;;chr4:4291837..4291859,-!p2@LYAR!0.91!24.15!LYAR;;chr7:128577972..128578047,+!p1@IRF5!0.91!11.52!IRF5;;chr18:53257068..53257086,-!p12@TCF4!0.91!9.85!TCF4;;chr2:239148671..239148686,-!p1@HES6!0.89!26.01!HES6;;chr10:135122868..135122893,+!p3@ZNF511!0.89!6.69!ZNF511;;chr1:25256756..25256774,-!p1@RUNX3!0.88!12.82!RUNX3;;chr18:52989565..52989623,-!p9@TCF4!0.88!8.55!TCF4;;chr7:148581327..148581347,-!p2@EZH2!0.87!23.23!EZH2;;chr2:214015111..214015179,-!p1@IKZF2!0.87!11.89!IKZF2;;chr18:53257001..53257015,-!p5@TCF4!0.87!11.33!TCF4;;chr1:226595648..226595659,-!p3@PARP1!0.86!10.78!PARP1;;chr18:52989081..52989117,-!p7@TCF4!0.86!9.85!TCF4;;chr18:53089493..53089517,-!p15@TCF4!0.86!6.32!TCF4;;chr5:134369879..134369898,-!p2@PITX1!0.86!6.32!PITX1;;chr6:41673552..41673571,-!p10@TFEB!0.86!6.32!TFEB;;chr7:44143925..44143970,+!p1@AEBP1!0.85!145.11!AEBP1;;chr1:151319654..151319698,-!p2@RFX5!0.85!13.75!RFX5;;chr17:42295682..42295731,-!p17@UBTF!0.85!6.13!UBTF;;chr11:19262421..19262455,-!p3@E2F8!0.85!6.13!E2F8;;chr12:54447637..54447659,+!p4@HOXC4!0.85!6.13!HOXC4;;chr6:44233252..44233296,-!p1@NFKBIE!0.84!62.80!NFKBIE;;chr5:138609782..138609826,+!p5@MATR3!0.84!41.25!MATR3;;chr18:47814010..47814021,-!p3@CXXC1!0.84!10.22!CXXC1;;chr6:144385698..144385742,-!p2@PLAGL1!0.84!7.25!PLAGL1;;chr3:32023232..32023273,+!p1@ZNF860!0.83!8.36!ZNF860;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.57!SOX11;;chr2:60778062..60778075,-!p6@BCL11A!0.82!5.57!BCL11A;;chr8:86089498..86089519,+!p6@E2F5!0.81!5.39!E2F5;;chr1:167298425..167298440,+!p8@POU2F1!0.81!5.39!POU2F1;;chr17:41277372..41277418,-!p1@BRCA1!0.80!20.62!BRCA1;;chr19:13213704..13213726,-!p3@LYL1!0.80!7.25!LYL1;;chr19:19779619..19779670,+!p1@ZNF101!0.79!15.42!ZNF101;;chr18:53254566..53254567,-!p8@TCF4!0.78!8.55!TCF4;;chr4:109089095..109089144,-!p6@LEF1!0.78!5.02!LEF1;;chr1:158979680..158979683,+!p9@IFI16!0.77!6.87!IFI16;;chr8:86089627..86089653,+!p3@E2F5!0.77!5.57!E2F5;;chr19:42636625..42636632,-!p2@POU2F2!0.77!4.83!POU2F2;;chr17:38020516..38020544,-!p5@IKZF3!0.77!4.83!IKZF3;;chr19:13213954..13214021,-!p4@LYL1!0.77!4.83!LYL1;;chr7:64363638..64363667,+!p1@ZNF273!0.76!26.38!ZNF273;;chr11:19263160..19263176,-!p1@E2F8!0.76!5.76!E2F8;;chr17:41623667..41623682,-!p8@ETV4!0.76!5.20!ETV4;;chr14:55493763..55493824,-!p1@WDHD1!0.75!38.28!WDHD1;;chr7:148581360..148581425,-!p1@EZH2!0.75!25.27!EZH2;;chr6:91006518..91006570,-!p1@BACH2!0.75!11.33!BACH2;;chr6:41700616..41700664,-!p8@TFEB!0.75!4.65!TFEB;;chr18:53255349..53255358,-!p29@TCF4!0.75!4.65!TCF4;;chr2:60780730..60780742,-!p5@BCL11A!0.75!4.65!BCL11A;;chr3:141747459..141747475,-!p1@TFDP2!0.74!41.25!TFDP2;;chr17:41623009..41623053,-!p4@ETV4!0.74!7.62!ETV4;;chr5:158526756..158526797,-!p3@EBF1!0.74!4.46!EBF1;;chr4:4291861..4291913,-!p1@LYAR!0.73!113.15!LYAR;;chr7:77428066..77428132,+!p2@PHTF2!0.73!31.59!PHTF2;;chr17:42295897..42295953,-!p10@UBTF!0.73!6.13!UBTF;;chr1:226595741..226595818,-!p1@PARP1!0.72!245.82!PARP1;;chr18:51750839..51750885,-!p2@MBD2!0.72!47.57!MBD2;;chr18:47808120..47808171,-!p2@MBD1!0.72!11.71!MBD1;;chrX:131624056..131624069,-!p2@MBNL3!0.72!5.95!MBNL3;;chr19:45971246..45971265,+!p1@FOSB!0.71!87.70!FOSB;;chr20:32274179..32274213,-!p1@E2F1!0.71!30.84!E2F1;;chr5:88179017..88179046,-!p2@MEF2C!0.71!18.58!MEF2C;;chr3:71007344..71007348,-!p6@FOXP1!0.71!18.39!FOXP1;;chr6:34204921..34204939,+!p3@HMGA1!0.70!136.75!HMGA1;;chr2:61108695..61108753,+!p1@REL!0.70!31.03!REL;;chr8:145669791..145669834,-!p1@TONSL!0.70!12.82!TONSL;;chr19:49864746..49864780,-!p2@TEAD2!0.70!5.76!TEAD2;;chr1:151032860..151032918,+!p1@MLLT11!0.69!52.77!MLLT11;;chr7:28610060..28610073,+!p9@CREB5!0.69!3.90!CREB5;;chr7:97840743..97840786,+!p1@BHLHA15!0.69!3.90!BHLHA15;;chr17:38020481..38020506,-!p7@IKZF3!0.69!3.90!IKZF3;;chr18:52894476..52894484,-!p41@TCF4!0.69!3.90!TCF4;;chrY:2803415..2803468,+!p1@ZFY!0.69!3.90!ZFY;;chr4:109088940..109089037,-!p4@LEF1!0.69!3.90!LEF1;;chr1:249132410..249132456,+!p1@ZNF672!0.68!32.70!ZNF672;;chr8:123793988..123794016,+!p1@ZHX2!0.68!7.25!ZHX2;;chr7:64023410..64023428,-!p2@ZNF680!0.68!6.32!ZNF680;;chr19:23433144..23433204,-!p1@ZNF724P!0.67!18.77!ZNF724P;;chr17:38020607..38020621,-!p9@IKZF3!0.67!3.72!IKZF3;;chr8:86089531..86089544,+!p7@E2F5!0.67!3.72!E2F5;;chr1:158978768..158978800,+!p8@IFI16!0.67!3.72!IFI16;;chr3:114173720..114173794,-!p6@ZBTB20!0.67!3.72!ZBTB20;;chr10:135122906..135122921,+!p4@ZNF511!0.67!3.72!ZNF511;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.66!18.39!TAL1;;chr7:64254834..64254854,+!p2@ZNF138!0.66!7.06!ZNF138;;chr12:50479101..50479108,+!p3@SMARCD1!0.66!6.13!SMARCD1;;chr11:6947720..6947812,+!p1@ZNF215!0.66!4.83!ZNF215;;chr6:126070769..126070801,+!p1@HEY2!0.66!4.27!HEY2;;chr12:11905383..11905407,+!p11@ETV6!0.66!3.53!ETV6;;chr17:41623716..41623727,-!p12@ETV4!0.66!3.53!ETV4;;chr2:214014959..214015006,-!p4@IKZF2!0.66!3.53!IKZF2;;chr2:214015379..214015410,-!p9@IKZF2!0.66!3.53!IKZF2;;chr1:214161272..214161322,+!p1@PROX1!0.65!5.20!PROX1;;chr3:71355163..71355209,-!p5@FOXP1!0.65!5.02!FOXP1;;chr5:124082580..124082603,-!p4@ZNF608!0.65!4.09!ZNF608;;chr18:51750948..51751059,-!p1@MBD2!0.64!126.90!MBD2;;chr3:48282587..48282603,+!p1@ZNF589!0.64!17.47!ZNF589;;chr8:86089417..86089440,+!p2@E2F5!0.64!7.43!E2F5;;chr18:53255839..53255854,-!p13@TCF4!0.64!4.09!TCF4;;chr12:26278008..26278024,-!p4@BHLHE41!0.64!4.09!BHLHE41;;chr3:71631151..71631194,-!p15@FOXP1!0.64!3.90!FOXP1;;chr2:214015343..214015366,-!p3@IKZF2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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528B-ALL%2529%2520cell%2520line%253aBALL-1.CNhs11251.10455-106G5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528B-ALL%2529%2520cell%2520line%253aBALL-1.CNhs11251.10455-106G5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528B-ALL%2529%2520cell%2520line%253aBALL-1.CNhs11251.10455-106G5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528B-ALL%2529%2520cell%2520line%253aBALL-1.CNhs11251.10455-106G5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520lymphoblastic%2520leukemia%2520%2528B-ALL%2529%2520cell%2520line%253aBALL-1.CNhs11251.10455-106G5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10455-106G5
 |is_a=DOID:12603;;EFO:0002091;;FF:0000210;;FF:0102144
 |is_obsolete=
+|library_id=CNhs11251
+|library_id_phase_based=2:CNhs11251
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10455
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10455
 |name=acute lymphoblastic leukemia (B-ALL) cell line:BALL-1
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11251,LSID757,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 63: / Line 78: @@
 |rna_weight_ug=48.1707
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB0256
 |sample_cell_line=BALL-1
@@ Line 84: / Line 100: @@
 |top_motifs=NKX6-1,2:3.15182087592;POU5F1:2.52148876397;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.46552203012;E2F1..5:1.97039044357;MYB:1.90112612097;CDX1,2,4:1.86373495389;VSX1,2:1.831468064;ZBTB16:1.7398790161;FOXP3:1.72759504922;FOXA2:1.68144687546;ELK1,4_GABP{A,B1}:1.63805615515;IKZF2:1.5945115516;PITX1..3:1.48303866012;RXRA_VDR{dimer}:1.46226368228;DMAP1_NCOR{1,2}_SMARC:1.45106749205;HOXA9_MEIS1:1.29959428669;ELF1,2,4:1.28469265857;PAX4:1.25644419918;AIRE:1.2202990802;POU2F1..3:1.12978685693;ZNF143:1.07596560169;BREu{core}:1.04906430407;NFY{A,B,C}:1.04493245492;FOXP1:1.03649866695;OCT4_SOX2{dimer}:1.0354105558;NRF1:1.03289753944;YY1:0.935696041203;PBX1:0.92186355629;CDC5L:0.91282303385;PAX3,7:0.893823976951;NKX2-2,8:0.884762547217;TEF:0.864327358476;EVI1:0.856470653907;GFI1:0.800445852097;HOX{A4,D4}:0.769970156627;PDX1:0.718118149607;HAND1,2:0.69444009715;PAX8:0.694408411057;SPI1:0.669488854245;T:0.667219211278;HES1:0.651094885015;ARID5B:0.641401518667;RORA:0.639925224356;FOXQ1:0.632488202393;RUNX1..3:0.628913702232;BPTF:0.628117563351;IRF1,2:0.579856194746;CUX2:0.568963039955;NFKB1_REL_RELA:0.512284379281;NKX3-1:0.502803079997;SPIB:0.495849072475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.493025713451;HBP1_HMGB_SSRP1_UBTF:0.483366019002;RBPJ:0.466015955252;SOX{8,9,10}:0.463910568961;ALX1:0.44621530602;MYOD1:0.435912258813;ZNF384:0.386211121708;TOPORS:0.381091137973;POU1F1:0.331082702299;ZEB1:0.313186738967;HSF1,2:0.305702886936;SNAI1..3:0.304178332038;RFX2..5_RFXANK_RFXAP:0.302325164491;ONECUT1,2:0.291647628454;GATA6:0.288008645766;NR5A1,2:0.284866968951;FOXO1,3,4:0.252310198118;LHX3,4:0.202194833537;bHLH_family:0.191721948222;STAT5{A,B}:0.185232823375;TLX2:0.180634836563;NFIL3:0.176325524219;ATF5_CREB3:0.141189363751;ETS1,2:0.127907782019;NKX3-2:0.121851957491;GATA4:0.0898444128612;PAX6:0.0839545538414;HNF4A_NR2F1,2:0.036966272029;SPZ1:0.0144794614144;IRF7:0.0134569810329;PRRX1,2:-0.0040053727582;POU6F1:-0.0303302314707;PPARG:-0.0414605946588;NKX2-3_NKX2-5:-0.0596017490418;MEF2{A,B,C,D}:-0.0705252200845;FOXD3:-0.0739401380587;NANOG{mouse}:-0.0834774707053;AR:-0.0860599678713;NKX2-1,4:-0.086176307118;HOX{A5,B5}:-0.091185871337;UFEwm:-0.105327689316;FOX{I1,J2}:-0.10723800947;FOXN1:-0.115262822801;HOX{A6,A7,B6,B7}:-0.124119187954;CRX:-0.14034573046;KLF4:-0.152147454195;SOX17:-0.157225661363;FOXL1:-0.157734961633;FOXM1:-0.165718992958;TFDP1:-0.169626578568;DBP:-0.172810326621;ADNP_IRX_SIX_ZHX:-0.192110453654;POU3F1..4:-0.207971365726;ESRRA:-0.245005349031;ATF4:-0.247489643348;HMGA1,2:-0.261003267972;ESR1:-0.275104554562;NR6A1:-0.275156126593;MYBL2:-0.319757735679;FOX{F1,F2,J1}:-0.330953485558;HNF1A:-0.339947577962;CREB1:-0.342142129997;RFX1:-0.349777665644;TGIF1:-0.362507311617;RREB1:-0.366845010674;LMO2:-0.399686243688;ALX4:-0.420931690509;AHR_ARNT_ARNT2:-0.433925910993;PRDM1:-0.434632184278;SOX5:-0.446260606203;GCM1,2:-0.448159567353;CEBPA,B_DDIT3:-0.462716159673;PAX2:-0.493100018156;NANOG:-0.496810399386;NR1H4:-0.504226666734;LEF1_TCF7_TCF7L1,2:-0.522546516683;SOX2:-0.544330641182;NHLH1,2:-0.570258690719;ZFP161:-0.572472105271;FOSL2:-0.606575013577;REST:-0.625640671905;EN1,2:-0.64846900146;SREBF1,2:-0.683536719594;NFE2:-0.724954085731;TAL1_TCF{3,4,12}:-0.751662073265;FOS_FOS{B,L1}_JUN{B,D}:-0.764350790555;EBF1:-0.793820092722;ATF2:-0.825401232129;ZNF423:-0.835678705692;BACH2:-0.836677096602;RXR{A,B,G}:-0.851864912337;HLF:-0.852156890877;ZNF148:-0.869917061761;SMAD1..7,9:-0.916664879364;TP53:-0.933933459452;MYFfamily:-0.954897700734;GFI1B:-0.991529675133;PAX1,9:-0.994599161807;ZIC1..3:-1.00984571706;JUN:-1.02107868028;NFATC1..3:-1.0286802135;MZF1:-1.04464626933;HIF1A:-1.04580156099;PATZ1:-1.06475747403;NFE2L2:-1.07480763202;IKZF1:-1.0755316501;GTF2A1,2:-1.08564110064;MAFB:-1.12898822211;MTF1:-1.1523240088;GZF1:-1.17014650625;HMX1:-1.25786962108;MAZ:-1.27579651087;NR3C1:-1.29509390249;TBP:-1.31555340358;MTE{core}:-1.32666952568;EGR1..3:-1.33150214025;FOX{D1,D2}:-1.33154767487;STAT2,4,6:-1.34724519902;STAT1,3:-1.34927256649;XBP1:-1.39264519851;HIC1:-1.40621269136;ZNF238:-1.41041013198;MED-1{core}:-1.41239986774;TLX1..3_NFIC{dimer}:-1.4428598334;NFIX:-1.47218693803;ZBTB6:-1.47810127098;TFAP2{A,C}:-1.47825564351;TEAD1:-1.49576831467;SRF:-1.51211927214;GTF2I:-1.51470634031;SP1:-1.51562016808;TBX4,5:-1.52052964993;XCPE1{core}:-1.53559048492;NFE2L1:-1.54866166249;EP300:-1.55863172568;TFAP2B:-1.64877293088;GLI1..3:-1.66445821699;ATF6:-1.71863547958;TFAP4:-1.87698508083;TFCP2:-1.92811583407;PAX5:-2.05208816939
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10455-106G5;search_select_hide=table117:FF:10455-106G5
 }}

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FF:10455-106G5: Difference between revisions

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Latest revision as of 14:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0