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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004765
|DRA_sample_Accession=CAGE@SAMD00004765
|accession_numbers=CAGE;DRX007791;DRR008663;DRZ000088;DRZ001473
|accession_numbers=CAGE;DRX007791;DRR008663;DRZ000088;DRZ001473;DRZ011438;DRZ012823
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000255
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Hodgkin%2527s%2520lymphoma%2520cell%2520line%253aHD-Mar2.CNhs11715.10435-106E3.hg38.nobarcode.ctss.bed.gz
|id=FF:10435-106E3
|id=FF:10435-106E3
|is_a=EFO:0002091;;FF:0000210;;FF:0104973
|is_a=EFO:0002091;;FF:0000210;;FF:0104973
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|library_id=CNhs11715
|library_id=CNhs11715
|library_id_phase_based=2:CNhs11715
|library_id_phase_based=2:CNhs11715
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10435
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10435
|name=Hodgkin's lymphoma cell line:HD-Mar2
|name=Hodgkin's lymphoma cell line:HD-Mar2
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs11715,LSID819,release009,COMPLETED"
|profile_hcage=CNhs11715,LSID819,release009,COMPLETED
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=",,,"
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
|top_motifs=RBPJ:2.8502295077;E2F1..5:2.71232046641;MYB:2.64596343923;NFY{A,B,C}:2.55580174231;ELK1,4_GABP{A,B1}:2.31944333379;ZNF143:2.06402128007;PAX3,7:2.03665921432;RORA:2.00777251077;PBX1:1.99349361357;IKZF2:1.85102047623;YY1:1.75190337181;NKX6-1,2:1.63871233048;ELF1,2,4:1.60701580199;NRF1:1.59023001924;AIRE:1.58029745273;SOX{8,9,10}:1.56118896384;BREu{core}:1.5375637362;FOXP1:1.41657806333;PITX1..3:1.39368210208;RUNX1..3:1.36277946515;DMAP1_NCOR{1,2}_SMARC:1.26625245067;T:1.23037916249;POU2F1..3:1.19861711173;CDX1,2,4:1.16202633426;GFI1:1.09057414148;HOXA9_MEIS1:1.03578068317;TFDP1:1.02053836908;ZBTB16:0.953301181621;FOXD3:0.93510878339;PAX8:0.924780728114;POU3F1..4:0.908252846826;NR5A1,2:0.880762308116;TOPORS:0.872835794222;CREB1:0.850954325872;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.840730962969;ATF5_CREB3:0.786725073697;POU6F1:0.775200038678;HES1:0.742480451165;PAX6:0.713330296632;BPTF:0.700758711988;GATA6:0.661141420492;LMO2:0.649224622163;EN1,2:0.6457169787;SPZ1:0.619808456565;FOXA2:0.614338293138;TLX2:0.609518565047;NKX2-2,8:0.601274600913;NKX2-1,4:0.555906058684;STAT1,3:0.535440794679;ZNF384:0.518538708471;FOX{F1,F2,J1}:0.501073766349;NANOG:0.487191948263;SPI1:0.478838310063;VSX1,2:0.471096998453;CUX2:0.443783821837;SPIB:0.44198459486;ARID5B:0.431679750884;TGIF1:0.406323019122;ETS1,2:0.385424192534;HOX{A6,A7,B6,B7}:0.381321935622;ALX1:0.375458282952;LEF1_TCF7_TCF7L1,2:0.336407519385;FOX{I1,J2}:0.326076007889;CRX:0.258621904743;ATF4:0.23442452449;SOX2:0.228377576504;FOXO1,3,4:0.179591588966;HOX{A4,D4}:0.149349840047;EVI1:0.129076202409;SNAI1..3:0.127518314442;FOXN1:0.0854763608885;SOX17:0.0663298289384;NANOG{mouse}:0.00426581581702;PAX4:-0.0149979466514;TEF:-0.0365804229197;POU1F1:-0.0410254419185;HBP1_HMGB_SSRP1_UBTF:-0.0485866971804;AR:-0.0493736817005;HAND1,2:-0.0636119504506;PAX2:-0.0636784327236;FOXP3:-0.0774580196419;bHLH_family:-0.0985909749363;PDX1:-0.0997742305186;ZEB1:-0.114307291233;RFX2..5_RFXANK_RFXAP:-0.127509554155;RFX1:-0.141424550822;IRF1,2:-0.167878751993;FOXM1:-0.169135184478;AHR_ARNT_ARNT2:-0.171357870581;FOXQ1:-0.179832882188;OCT4_SOX2{dimer}:-0.182209234927;HNF1A:-0.184208610099;NFE2L1:-0.197233467866;NFKB1_REL_RELA:-0.211964390707;PRRX1,2:-0.219223944928;MYOD1:-0.226151359738;LHX3,4:-0.243813184806;ONECUT1,2:-0.25418502432;MYBL2:-0.271789378504;HOX{A5,B5}:-0.276623481914;NKX3-1:-0.283861922887;STAT5{A,B}:-0.301033341527;HNF4A_NR2F1,2:-0.305008540471;SOX5:-0.313243551266;DBP:-0.377409694816;UFEwm:-0.409588659574;ZFP161:-0.421858417453;NFIL3:-0.495405065505;FOX{D1,D2}:-0.495512631827;ADNP_IRX_SIX_ZHX:-0.501425371471;PAX1,9:-0.511142304042;MYFfamily:-0.523068076141;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.531884368867;NR6A1:-0.539020087781;MEF2{A,B,C,D}:-0.546426273635;SREBF1,2:-0.550550901398;RXR{A,B,G}:-0.576129092459;EP300:-0.606661861526;HMGA1,2:-0.638388753381;MED-1{core}:-0.646255553091;NKX2-3_NKX2-5:-0.660705327659;GATA4:-0.661943487969;SMAD1..7,9:-0.670722684684;NFE2:-0.693036389901;POU5F1:-0.719164267061;IRF7:-0.722590081269;FOSL2:-0.732863379921;ESRRA:-0.734552655233;HLF:-0.744115453719;EGR1..3:-0.788093117908;REST:-0.794102375121;NR1H4:-0.79495706195;NR3C1:-0.802459376582;NFIX:-0.846684233331;HSF1,2:-0.860935588826;KLF4:-0.864479979384;ZIC1..3:-0.871448817212;MZF1:-0.873344802345;FOS_FOS{B,L1}_JUN{B,D}:-0.876491604219;JUN:-0.879618519313;ATF6:-0.887372617057;BACH2:-0.924330051572;CEBPA,B_DDIT3:-0.935890489876;PAX5:-0.938085142882;TAL1_TCF{3,4,12}:-0.93868801851;ZNF238:-0.949344854555;SRF:-0.951733500152;GZF1:-0.972176948473;ZNF148:-0.976997101206;ZNF423:-0.977194367573;GTF2A1,2:-0.98317730598;CDC5L:-1.01864391125;ESR1:-1.02341866409;NKX3-2:-1.04238429261;IKZF1:-1.05263516397;TFAP4:-1.05482209765;GCM1,2:-1.07259504298;RXRA_VDR{dimer}:-1.10993309761;NHLH1,2:-1.11080299096;TBP:-1.11360269372;NFATC1..3:-1.12869599354;FOXL1:-1.19458835092;ATF2:-1.20445173452;MTE{core}:-1.22880943443;RREB1:-1.25222780379;GTF2I:-1.26305419332;PPARG:-1.27029437549;ZBTB6:-1.272548142;ALX4:-1.29193360661;XBP1:-1.2963847739;TEAD1:-1.30593477435;STAT2,4,6:-1.35423038421;HIC1:-1.36842067775;HIF1A:-1.39062917823;TP53:-1.41763635239;PATZ1:-1.42065618006;GFI1B:-1.43954596434;HMX1:-1.4424231242;EBF1:-1.45909584047;MAZ:-1.53683546051;NFE2L2:-1.59501470745;XCPE1{core}:-1.6881050482;PRDM1:-1.7290627492;MTF1:-1.81494597966;MAFB:-1.83379301672;TFAP2B:-1.8518417577;TLX1..3_NFIC{dimer}:-1.92564422515;SP1:-2.16722162555;GLI1..3:-2.2580396237;TBX4,5:-2.6523108349;TFAP2{A,C}:-2.67877605442;TFCP2:-2.80608577912
|top_motifs=RBPJ:2.8502295077;E2F1..5:2.71232046641;MYB:2.64596343923;NFY{A,B,C}:2.55580174231;ELK1,4_GABP{A,B1}:2.31944333379;ZNF143:2.06402128007;PAX3,7:2.03665921432;RORA:2.00777251077;PBX1:1.99349361357;IKZF2:1.85102047623;YY1:1.75190337181;NKX6-1,2:1.63871233048;ELF1,2,4:1.60701580199;NRF1:1.59023001924;AIRE:1.58029745273;SOX{8,9,10}:1.56118896384;BREu{core}:1.5375637362;FOXP1:1.41657806333;PITX1..3:1.39368210208;RUNX1..3:1.36277946515;DMAP1_NCOR{1,2}_SMARC:1.26625245067;T:1.23037916249;POU2F1..3:1.19861711173;CDX1,2,4:1.16202633426;GFI1:1.09057414148;HOXA9_MEIS1:1.03578068317;TFDP1:1.02053836908;ZBTB16:0.953301181621;FOXD3:0.93510878339;PAX8:0.924780728114;POU3F1..4:0.908252846826;NR5A1,2:0.880762308116;TOPORS:0.872835794222;CREB1:0.850954325872;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.840730962969;ATF5_CREB3:0.786725073697;POU6F1:0.775200038678;HES1:0.742480451165;PAX6:0.713330296632;BPTF:0.700758711988;GATA6:0.661141420492;LMO2:0.649224622163;EN1,2:0.6457169787;SPZ1:0.619808456565;FOXA2:0.614338293138;TLX2:0.609518565047;NKX2-2,8:0.601274600913;NKX2-1,4:0.555906058684;STAT1,3:0.535440794679;ZNF384:0.518538708471;FOX{F1,F2,J1}:0.501073766349;NANOG:0.487191948263;SPI1:0.478838310063;VSX1,2:0.471096998453;CUX2:0.443783821837;SPIB:0.44198459486;ARID5B:0.431679750884;TGIF1:0.406323019122;ETS1,2:0.385424192534;HOX{A6,A7,B6,B7}:0.381321935622;ALX1:0.375458282952;LEF1_TCF7_TCF7L1,2:0.336407519385;FOX{I1,J2}:0.326076007889;CRX:0.258621904743;ATF4:0.23442452449;SOX2:0.228377576504;FOXO1,3,4:0.179591588966;HOX{A4,D4}:0.149349840047;EVI1:0.129076202409;SNAI1..3:0.127518314442;FOXN1:0.0854763608885;SOX17:0.0663298289384;NANOG{mouse}:0.00426581581702;PAX4:-0.0149979466514;TEF:-0.0365804229197;POU1F1:-0.0410254419185;HBP1_HMGB_SSRP1_UBTF:-0.0485866971804;AR:-0.0493736817005;HAND1,2:-0.0636119504506;PAX2:-0.0636784327236;FOXP3:-0.0774580196419;bHLH_family:-0.0985909749363;PDX1:-0.0997742305186;ZEB1:-0.114307291233;RFX2..5_RFXANK_RFXAP:-0.127509554155;RFX1:-0.141424550822;IRF1,2:-0.167878751993;FOXM1:-0.169135184478;AHR_ARNT_ARNT2:-0.171357870581;FOXQ1:-0.179832882188;OCT4_SOX2{dimer}:-0.182209234927;HNF1A:-0.184208610099;NFE2L1:-0.197233467866;NFKB1_REL_RELA:-0.211964390707;PRRX1,2:-0.219223944928;MYOD1:-0.226151359738;LHX3,4:-0.243813184806;ONECUT1,2:-0.25418502432;MYBL2:-0.271789378504;HOX{A5,B5}:-0.276623481914;NKX3-1:-0.283861922887;STAT5{A,B}:-0.301033341527;HNF4A_NR2F1,2:-0.305008540471;SOX5:-0.313243551266;DBP:-0.377409694816;UFEwm:-0.409588659574;ZFP161:-0.421858417453;NFIL3:-0.495405065505;FOX{D1,D2}:-0.495512631827;ADNP_IRX_SIX_ZHX:-0.501425371471;PAX1,9:-0.511142304042;MYFfamily:-0.523068076141;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.531884368867;NR6A1:-0.539020087781;MEF2{A,B,C,D}:-0.546426273635;SREBF1,2:-0.550550901398;RXR{A,B,G}:-0.576129092459;EP300:-0.606661861526;HMGA1,2:-0.638388753381;MED-1{core}:-0.646255553091;NKX2-3_NKX2-5:-0.660705327659;GATA4:-0.661943487969;SMAD1..7,9:-0.670722684684;NFE2:-0.693036389901;POU5F1:-0.719164267061;IRF7:-0.722590081269;FOSL2:-0.732863379921;ESRRA:-0.734552655233;HLF:-0.744115453719;EGR1..3:-0.788093117908;REST:-0.794102375121;NR1H4:-0.79495706195;NR3C1:-0.802459376582;NFIX:-0.846684233331;HSF1,2:-0.860935588826;KLF4:-0.864479979384;ZIC1..3:-0.871448817212;MZF1:-0.873344802345;FOS_FOS{B,L1}_JUN{B,D}:-0.876491604219;JUN:-0.879618519313;ATF6:-0.887372617057;BACH2:-0.924330051572;CEBPA,B_DDIT3:-0.935890489876;PAX5:-0.938085142882;TAL1_TCF{3,4,12}:-0.93868801851;ZNF238:-0.949344854555;SRF:-0.951733500152;GZF1:-0.972176948473;ZNF148:-0.976997101206;ZNF423:-0.977194367573;GTF2A1,2:-0.98317730598;CDC5L:-1.01864391125;ESR1:-1.02341866409;NKX3-2:-1.04238429261;IKZF1:-1.05263516397;TFAP4:-1.05482209765;GCM1,2:-1.07259504298;RXRA_VDR{dimer}:-1.10993309761;NHLH1,2:-1.11080299096;TBP:-1.11360269372;NFATC1..3:-1.12869599354;FOXL1:-1.19458835092;ATF2:-1.20445173452;MTE{core}:-1.22880943443;RREB1:-1.25222780379;GTF2I:-1.26305419332;PPARG:-1.27029437549;ZBTB6:-1.272548142;ALX4:-1.29193360661;XBP1:-1.2963847739;TEAD1:-1.30593477435;STAT2,4,6:-1.35423038421;HIC1:-1.36842067775;HIF1A:-1.39062917823;TP53:-1.41763635239;PATZ1:-1.42065618006;GFI1B:-1.43954596434;HMX1:-1.4424231242;EBF1:-1.45909584047;MAZ:-1.53683546051;NFE2L2:-1.59501470745;XCPE1{core}:-1.6881050482;PRDM1:-1.7290627492;MTF1:-1.81494597966;MAFB:-1.83379301672;TFAP2B:-1.8518417577;TLX1..3_NFIC{dimer}:-1.92564422515;SP1:-2.16722162555;GLI1..3:-2.2580396237;TBX4,5:-2.6523108349;TFAP2{A,C}:-2.67877605442;TFCP2:-2.80608577912
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10435-106E3;search_select_hide=table117:FF:10435-106E3
}}
}}

Latest revision as of 14:01, 3 June 2020

Name:Hodgkin's lymphoma cell line:HD-Mar2
Species:Human (Homo sapiens)
Library ID:CNhs11715
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexunknown
ageNA
cell typelymphocyte
cell lineHD-Mar2
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004765
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11715 CAGE DRX007791 DRR008663
Accession ID Hg19

Library idBAMCTSS
CNhs11715 DRZ000088 DRZ001473
Accession ID Hg38

Library idBAMCTSS
CNhs11715 DRZ011438 DRZ012823
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0581
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.795
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
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C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11715

Jaspar motifP-value
MA0002.20.0626
MA0003.10.502
MA0004.10.474
MA0006.10.164
MA0007.10.635
MA0009.10.847
MA0014.10.612
MA0017.10.592
MA0018.20.147
MA0019.10.235
MA0024.12.94306e-11
MA0025.10.488
MA0027.10.775
MA0028.18.5861e-8
MA0029.11
MA0030.10.22
MA0031.10.831
MA0035.20.109
MA0038.10.129
MA0039.20.236
MA0040.10.261
MA0041.10.318
MA0042.10.501
MA0043.10.94
MA0046.10.147
MA0047.20.761
MA0048.10.308
MA0050.10.269
MA0051.10.173
MA0052.10.0655
MA0055.10.169
MA0057.10.542
MA0058.10.324
MA0059.10.115
MA0060.11.49736e-16
MA0061.10.521
MA0062.22.58469e-14
MA0065.20.8
MA0066.10.805
MA0067.10.834
MA0068.10.447
MA0069.10.628
MA0070.10.228
MA0071.10.43
MA0072.10.134
MA0073.10.944
MA0074.10.562
MA0076.13.32962e-13
MA0077.10.897
MA0078.10.465
MA0079.20.19
MA0080.20.0561
MA0081.10.102
MA0083.10.00251
MA0084.10.304
MA0087.10.348
MA0088.16.01992e-4
MA0090.14.49821e-4
MA0091.10.526
MA0092.10.531
MA0093.10.432
MA0099.21.02234e-15
MA0100.10.00251
MA0101.10.209
MA0102.20.00232
MA0103.10.42
MA0104.20.00567
MA0105.10.306
MA0106.10.658
MA0107.10.0423
MA0108.28.62064e-7
MA0111.10.0988
MA0112.20.326
MA0113.10.246
MA0114.10.866
MA0115.10.213
MA0116.10.0602
MA0117.10.707
MA0119.10.741
MA0122.10.972
MA0124.10.815
MA0125.10.975
MA0131.10.0146
MA0135.10.0523
MA0136.13.79632e-7
MA0137.20.293
MA0138.20.475
MA0139.10.51
MA0140.10.135
MA0141.10.743
MA0142.10.656
MA0143.10.0512
MA0144.10.0213
MA0145.10.0345
MA0146.10.69
MA0147.10.00321
MA0148.10.405
MA0149.10.132
MA0150.10.00553
MA0152.10.13
MA0153.10.0926
MA0154.10.988
MA0155.10.465
MA0156.13.87494e-10
MA0157.10.779
MA0159.10.92
MA0160.10.607
MA0162.10.485
MA0163.10.00198
MA0164.10.607
MA0258.10.916
MA0259.10.0244



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11715

Novel motifP-value
10.214
100.0442
1000.289
1010.337
1020.526
1030.626
1040.673
1050.667
1060.0711
1070.029
1080.22
1090.545
110.431
1100.839
1110.33
1120.372
1130.54
1140.465
1150.881
1160.688
1170.0578
1180.91
1190.352
120.542
1200.841
1210.811
1220.848
1230.00206
1240.0558
1250.255
1260.855
1270.492
1280.037
1290.775
130.246
1300.159
1310.887
1320.51
1330.589
1340.369
1350.42
1360.587
1370.632
1380.854
1390.686
140.894
1400.719
1410.61
1420.863
1430.135
1440.907
1450.766
1460.628
1470.147
1480.827
1490.0579
150.516
1500.993
1510.399
1520.00738
1530.841
1541
1550.152
1560.695
1570.173
1580.821
1590.123
160.359
1600.848
1610.32
1620.644
1630.315
1640.682
1650.899
1660.439
1670.0508
1680.0922
1690.0949
170.243
180.44
190.0831
20.187
200.476
210.256
220.219
230.00843
240.954
250.205
260.242
270.894
280.558
290.0772
30.608
300.0825
310.378
320.0396
330.977
340.188
350.0942
360.0829
370.864
380.99
390.0723
40.122
400.895
410.555
420.193
430.741
440.547
450.173
460.442
470.071
480.509
490.468
50.837
500.502
510.599
520.0199
530.65
540.345
550.269
560.79
570.58
580.627
590.23
60.485
600.16
610.27
620.742
630.987
640.636
650.471
660.0218
670.619
680.209
690.747
70.35
700.655
710.173
720.826
730.057
740.32
750.135
760.634
770.0359
780.538
790.0324
80.854
800.515
810.704
820.711
830.77
840.711
850.026
860.621
870.397
880.786
890.0422
90.434
900.395
910.551
920.19
930.881
940.287
950.512
960.377
970.219
980.986
990.167



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11715


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0104973 (Hodgkin lymphoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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